Query 025390
Match_columns 253
No_of_seqs 198 out of 839
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:20:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 4.8E-42 1.6E-46 285.1 7.7 108 65-174 2-111 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 1.3E-40 4.5E-45 266.2 8.0 107 65-174 1-107 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 6.2E-39 2.1E-43 259.2 8.2 106 67-174 2-108 (116)
4 2cbp_A Cucumber basic protein; 100.0 5E-38 1.7E-42 245.9 7.0 96 67-170 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 5E-34 1.7E-38 221.4 8.1 91 67-170 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.3 8.6E-12 2.9E-16 100.5 7.2 96 64-170 14-139 (140)
7 1bxv_A Plastocyanin; copper pr 99.1 6.5E-11 2.2E-15 87.5 6.7 85 68-170 4-91 (91)
8 2cal_A Rusticyanin; iron respi 99.0 1.9E-10 6.6E-15 95.5 6.2 76 94-170 62-154 (154)
9 1iuz_A Plastocyanin; electron 98.9 2.5E-09 8.4E-14 81.1 6.1 91 67-170 2-98 (98)
10 2aan_A Auracyanin A; cupredoxi 98.8 2.6E-08 9.1E-13 80.0 11.4 94 65-170 17-139 (139)
11 1plc_A Plastocyanin; electron 98.8 6.5E-09 2.2E-13 78.4 6.7 90 68-170 2-99 (99)
12 2gim_A Plastocyanin; beta shee 98.8 5E-09 1.7E-13 79.7 6.0 90 68-170 5-105 (106)
13 1pmy_A Pseudoazurin; electron 98.8 9.2E-09 3.1E-13 82.7 7.8 83 72-172 11-95 (123)
14 1paz_A Pseudoazurin precursor; 98.8 1.5E-08 5.1E-13 81.5 7.5 82 72-171 11-94 (123)
15 2plt_A Plastocyanin; electron 98.8 7.2E-09 2.5E-13 77.8 5.3 91 67-170 2-98 (98)
16 1kdj_A Plastocyanin; electron 98.7 2.2E-08 7.4E-13 75.8 7.4 90 68-170 2-102 (102)
17 1byp_A Protein (plastocyanin); 98.7 2E-08 6.9E-13 75.6 6.5 90 68-170 2-99 (99)
18 1b3i_A PETE protein, protein ( 98.7 4.2E-08 1.4E-12 73.5 7.5 88 68-170 4-97 (97)
19 3tu6_A Pseudoazurin (blue copp 98.7 2E-08 6.8E-13 81.5 5.7 85 71-173 11-98 (127)
20 3erx_A Pseudoazurin; copper pr 98.7 3E-08 1E-12 79.9 6.3 70 94-171 22-94 (123)
21 1pcs_A Plastocyanin; electron 98.6 5.4E-08 1.9E-12 73.0 5.0 90 68-170 4-98 (98)
22 3ef4_A Pseudoazurin, blue copp 98.6 1.2E-07 4E-12 76.9 7.2 83 71-171 10-95 (124)
23 3c75_A Amicyanin; copper prote 98.1 6.7E-06 2.3E-10 66.2 6.9 66 94-170 61-132 (132)
24 3cvb_A Plastocyanin; cupredoxi 98.1 1E-05 3.5E-10 60.8 7.5 88 68-170 4-104 (105)
25 3ay2_A Lipid modified azurin p 98.0 2.1E-05 7.1E-10 66.7 8.7 92 67-170 43-166 (167)
26 4hci_A Cupredoxin 1; structura 98.0 5.6E-06 1.9E-10 62.8 4.5 66 94-170 29-100 (100)
27 1cuo_A Protein (azurin ISO-2); 97.9 7.8E-05 2.7E-09 60.3 10.9 91 68-170 4-128 (129)
28 2ux6_A Pseudoazurin; type-1 co 97.9 1.5E-05 5.1E-10 63.7 6.5 69 94-171 22-92 (122)
29 2ov0_A Amicyanin; beta-sandwic 97.9 2.5E-05 8.7E-10 59.8 6.5 82 66-170 18-105 (105)
30 1id2_A Amicyanin; beta barrel, 97.8 4.3E-05 1.5E-09 58.8 7.1 66 94-170 35-106 (106)
31 2iaa_C Azurin; quinoprotein, t 97.7 0.00027 9.4E-09 57.1 9.7 91 68-170 3-127 (128)
32 1nwp_A Azurin; electron transp 97.6 0.00023 7.9E-09 57.5 8.8 91 68-170 4-128 (128)
33 1iko_P Ephrin-B2; greek KEY, g 97.6 2.6E-05 9E-10 67.1 2.6 78 96-173 25-142 (178)
34 2ccw_A Azurin II, AZN-2; elect 97.6 0.00037 1.3E-08 56.3 9.2 91 68-170 4-128 (129)
35 2x11_B Ephrin-A5; receptor-sig 97.5 0.00022 7.4E-09 61.4 7.4 77 95-174 52-165 (177)
36 3czu_B Ephrin-A1; ATP-binding, 97.1 0.0013 4.3E-08 56.9 7.6 76 95-173 50-162 (182)
37 1shx_A Ephrin-A5; ephrin signa 97.0 0.0015 5E-08 54.1 7.0 76 95-173 23-135 (138)
38 3d12_B Ephrin-B3; beta propell 97.0 0.00089 3E-08 55.6 5.4 76 95-170 22-140 (141)
39 1iby_A Nitrosocyanin; RED copp 96.6 0.0041 1.4E-07 47.5 6.3 66 94-170 39-111 (112)
40 2vsm_B Ephrin-B2; developmenta 96.6 0.0016 5.4E-08 54.0 4.0 75 96-170 24-138 (140)
41 2cua_A Protein (CUA); CUA cent 96.3 0.0098 3.4E-07 48.2 7.3 66 94-170 61-134 (135)
42 2wo3_B Ephrin-A2; transferase- 96.2 0.012 4.2E-07 49.6 7.1 76 95-173 32-145 (157)
43 3hei_B Ephrin-A1; EPH receptor 95.0 0.044 1.5E-06 45.0 6.1 76 95-170 22-131 (132)
44 3fsa_A Azurin; copper, cupredo 94.9 0.29 9.8E-06 39.6 10.7 87 69-170 5-125 (125)
45 2dv6_A Nitrite reductase; elec 93.3 0.1 3.5E-06 48.5 5.7 73 94-173 56-134 (447)
46 3s8f_B Cytochrome C oxidase su 92.0 0.48 1.7E-05 39.9 7.6 65 94-170 94-167 (168)
47 1fwx_A Nitrous oxide reductase 91.8 0.31 1.1E-05 48.5 7.2 68 94-172 514-593 (595)
48 3sbq_A Nitrous-oxide reductase 90.3 0.51 1.7E-05 47.4 7.0 67 94-171 559-637 (638)
49 1mzy_A Copper-containing nitri 77.5 2.6 9E-05 37.6 5.0 74 95-171 66-152 (333)
50 1oe1_A Dissimilatory copper-co 75.5 3.2 0.00011 37.0 5.0 75 95-172 67-153 (336)
51 1kbv_A ANIA, major outer membr 71.5 3.5 0.00012 36.9 4.2 76 94-172 71-157 (327)
52 2zoo_A Probable nitrite reduct 67.9 3 0.0001 38.6 3.0 75 94-172 61-147 (442)
53 3l6w_A Hemocyanin 1; cupredoxi 67.0 5.3 0.00018 39.0 4.6 73 94-169 412-490 (491)
54 2bw4_A Copper-containing nitri 62.0 8.9 0.0003 34.1 4.9 75 95-172 73-159 (340)
55 3iuw_A Activating signal coint 57.4 7.1 0.00024 29.5 2.8 16 95-110 36-52 (83)
56 3gdc_A Multicopper oxidase; be 49.8 21 0.00072 31.2 5.1 79 94-173 67-156 (288)
57 1mzy_A Copper-containing nitri 49.4 8.3 0.00028 34.3 2.5 33 140-172 286-319 (333)
58 1yel_A AT1G16640; CESG, protei 49.3 8.2 0.00028 29.0 2.1 27 89-117 70-96 (104)
59 4i1k_A B3 domain-containing tr 49.2 9.7 0.00033 30.8 2.6 29 89-117 109-137 (146)
60 1cyx_A CYOA; electron transpor 48.4 14 0.00046 32.1 3.5 29 140-170 84-115 (205)
61 1oe1_A Dissimilatory copper-co 46.8 17 0.00059 32.2 4.1 34 140-173 286-320 (336)
62 3hb3_B Cytochrome C oxidase su 45.8 14 0.00049 33.6 3.4 31 140-172 232-265 (298)
63 3gdc_A Multicopper oxidase; be 45.3 7.2 0.00025 34.2 1.4 32 140-171 257-288 (288)
64 2gsm_B Cytochrome C oxidase su 43.6 17 0.00057 32.3 3.5 31 140-172 214-247 (262)
65 3cg8_A Laccase; oxidoreductase 43.3 41 0.0014 30.3 6.1 30 144-173 279-308 (343)
66 2l8d_A Lamin-B receptor; DNA b 42.5 29 0.00098 25.2 3.9 46 94-144 7-54 (66)
67 1sdd_A Coagulation factor V; c 41.1 3.5 0.00012 36.6 -1.3 33 140-172 269-301 (306)
68 1v54_B Cytochrome C oxidase po 40.5 16 0.00056 31.7 2.9 30 140-171 183-215 (227)
69 2dig_A Lamin-B receptor; tudor 35.8 41 0.0014 24.5 3.9 46 94-144 10-57 (68)
70 2zwn_A Two-domain type laccase 34.5 40 0.0014 30.1 4.5 79 96-174 38-129 (339)
71 2z0t_A Putative uncharacterize 33.7 17 0.00059 28.4 1.7 11 95-105 32-42 (109)
72 2q9o_A Laccase-1; multicopper 33.1 45 0.0015 32.1 4.9 71 95-172 69-158 (559)
73 1kbv_A ANIA, major outer membr 31.9 29 0.00098 30.9 3.1 33 140-172 275-308 (327)
74 2k1p_A Zinc finger RAN-binding 30.9 15 0.0005 22.8 0.7 15 7-21 18-32 (33)
75 1fft_B Ubiquinol oxidase; elec 30.6 20 0.00068 32.8 1.9 65 94-170 152-225 (315)
76 4he6_A Peptidase family U32; u 30.2 34 0.0012 24.8 2.8 18 93-110 26-43 (89)
77 3g5w_A Multicopper oxidase typ 28.6 46 0.0016 29.6 3.9 79 96-174 37-128 (318)
78 2bw4_A Copper-containing nitri 28.0 52 0.0018 29.1 4.1 34 140-173 292-326 (340)
79 1n0z_A ZNF265; zinc finger, RN 27.9 18 0.00063 23.9 0.8 16 7-22 28-43 (45)
80 1aoz_A Ascorbate oxidase; oxid 27.8 74 0.0025 30.4 5.4 77 94-173 35-125 (552)
81 1zpu_A Iron transport multicop 27.7 75 0.0026 30.4 5.4 72 94-172 35-125 (534)
82 2lk0_A RNA-binding protein 5; 26.9 17 0.00057 22.3 0.4 15 7-21 17-31 (32)
83 3t6v_A Laccase; beta barrel, o 26.8 76 0.0026 30.1 5.3 75 95-172 37-130 (495)
84 2zoo_A Probable nitrite reduct 26.4 42 0.0014 30.8 3.3 35 140-174 265-300 (442)
85 3pxl_A Laccase; 4-copper prote 26.0 83 0.0028 30.0 5.4 71 95-172 36-129 (499)
86 1xne_A Hypothetical protein PF 26.0 19 0.00063 28.4 0.7 12 95-106 33-44 (113)
87 3sqr_A Laccase; multicopper ox 25.8 95 0.0032 30.4 5.8 33 140-172 156-188 (580)
88 2qcp_X Cation efflux system pr 25.6 32 0.0011 25.1 1.8 17 94-110 51-67 (80)
89 2vb2_X Copper protein, cation 25.4 32 0.0011 25.6 1.8 21 90-110 55-75 (88)
90 1w0n_A Endo-1,4-beta-xylanase 22.9 1.7E+02 0.0057 23.7 5.7 64 98-174 41-118 (131)
91 2l55_A SILB,silver efflux prot 22.4 39 0.0013 24.8 1.8 21 91-111 42-62 (82)
92 1sdd_B Coagulation factor V; c 21.9 40 0.0014 32.8 2.3 32 140-171 296-327 (647)
93 1wid_A DNA-binding protein RAV 20.2 53 0.0018 25.7 2.3 20 90-109 85-104 (130)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=4.8e-42 Score=285.14 Aligned_cols=108 Identities=23% Similarity=0.523 Sum_probs=101.3
Q ss_pred ceeEEEecCCCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCCCceEEEE-CcccCCCCCCCCCcccccCCceEEEE
Q 025390 65 EAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQV-NKDAYTNCSTEYPVARYTDGHTVFTF 143 (253)
Q Consensus 65 ~A~~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V-~k~~YdsC~~s~pi~~~s~G~t~v~L 143 (253)
+|++|+|||+.||+++++ ..+|++||++++|+|||+|+|+|++++|+|+|| +|++|+.|+..+++..+++|+++|+|
T Consensus 2 ~a~~~~VGg~~GW~~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L 79 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSS--PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIER 79 (138)
T ss_dssp CCCEEETTGGGCSSCCSS--TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEE
T ss_pred CceEEEECCcCcCcCCCC--ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEe
Confidence 578999999999999853 258999999999999999999999999999999 99999999999999999999999999
Q ss_pred -eccccEEEEeCCCCCCCCCCeEEEEEecCCC
Q 025390 144 -KQSGPYYFISGNKDNCVNNEKLAVIVLADRS 174 (253)
Q Consensus 144 -~~~G~~YFICgv~gHC~~GmKlaI~V~a~~s 174 (253)
+++|++||||++++||++||||+|+|.+.++
T Consensus 80 ~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~ 111 (138)
T 1jer_A 80 LDELGMHYFVCTVGTHCSNGQKLSINVVAANA 111 (138)
T ss_dssp CCSSEEEEEECCSTTTGGGTCEEEEEEECCC-
T ss_pred ccCCcCEEEEcCCCCccccCCEEEEEEcCCCC
Confidence 9999999999999999999999999987654
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=1.3e-40 Score=266.24 Aligned_cols=107 Identities=31% Similarity=0.680 Sum_probs=99.0
Q ss_pred ceeEEEecCCCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCcccccCCceEEEEe
Q 025390 65 EAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFK 144 (253)
Q Consensus 65 ~A~~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi~~~s~G~t~v~L~ 144 (253)
+|++|+|||+.||+++++ .+|++||++++|+|||+|+|+|.+++|+|+||++++|+.|+.++++..+++|+++|+|+
T Consensus 1 ~a~~~~VG~~~GW~~~~~---~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~ 77 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLVP---YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLK 77 (109)
T ss_dssp CCCEEETTGGGCSCSSSC---CCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECC
T ss_pred CCcEEEeCCCCCccCCCC---cChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEEC
Confidence 367899999999999852 47999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEEEEeCCCCCCCCCCeEEEEEecCCC
Q 025390 145 QSGPYYFISGNKDNCVNNEKLAVIVLADRS 174 (253)
Q Consensus 145 ~~G~~YFICgv~gHC~~GmKlaI~V~a~~s 174 (253)
++|++||||++++||++||||+|+|.+..+
T Consensus 78 ~~G~~yFic~~~gHC~~GmKl~I~V~~~~s 107 (109)
T 1ws8_A 78 RPGTFYFLCGIPGHCQLGQKVEIKVDPGSS 107 (109)
T ss_dssp SSEEEEEECCSTTTTTTTCEEEEEECC---
T ss_pred CCcCEEEECCCCCcccCCCEEEEEEcCCCC
Confidence 999999999999999999999999987554
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=6.2e-39 Score=259.17 Aligned_cols=106 Identities=32% Similarity=0.682 Sum_probs=96.9
Q ss_pred eEEEecCCCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCcccccCCceEEEEecc
Q 025390 67 REFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQS 146 (253)
Q Consensus 67 ~~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi~~~s~G~t~v~L~~~ 146 (253)
++|+|||+.||+++.+ ..+|++||++++|+|||+|+|+|.+++|+|+||++++|++|+..+++..+++|+++|+|+++
T Consensus 2 ~~~~VG~~~GW~~~~~--~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~ 79 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPSD--PKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTT 79 (116)
T ss_dssp CEEETTGGGCSSCCSS--TTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSC
T ss_pred eEEEECCcCcCcCCCC--CcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCC
Confidence 4799999999998732 25899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCCCCCCeEEE-EEecCCC
Q 025390 147 GPYYFISGNKDNCVNNEKLAV-IVLADRS 174 (253)
Q Consensus 147 G~~YFICgv~gHC~~GmKlaI-~V~a~~s 174 (253)
|++||||++++||++||||+| +|.+.++
T Consensus 80 G~~yFic~~~~HC~~Gmkl~In~V~~~~~ 108 (116)
T 1x9u_A 80 GPQYYICTVGDHCRVGQKLSINVVGAGGA 108 (116)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEECC---
T ss_pred CCEEEECCCCCccccCCEEEEEEECCCCC
Confidence 999999999999999999999 8866543
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=5e-38 Score=245.91 Aligned_cols=96 Identities=30% Similarity=0.666 Sum_probs=92.0
Q ss_pred eEEEecCCCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCcccccCCceEEEEecc
Q 025390 67 REFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQS 146 (253)
Q Consensus 67 ~~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi~~~s~G~t~v~L~~~ 146 (253)
++|+|||+.||++ +|++||++++|+|||+|+|+|.+++|+|+||++++|+.|+.++++..+++|+++|+| ++
T Consensus 1 ~~~~VG~~~GW~~-------~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~ 72 (96)
T 2cbp_A 1 AVYVVGGSGGWTF-------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PK 72 (96)
T ss_dssp CEEETTGGGCSCS-------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CS
T ss_pred CEEEECCcCCCcc-------ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cC
Confidence 3699999999996 399999999999999999999999999999999999999999999999999999999 89
Q ss_pred ccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 147 GPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 147 G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
|++||||++++||++||||+|+|+
T Consensus 73 g~~yFic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 73 GQSYFICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EEEEEECCSTTTGGGTCEEEEEEC
T ss_pred CCEEEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999999995
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=5e-34 Score=221.43 Aligned_cols=91 Identities=30% Similarity=0.546 Sum_probs=85.9
Q ss_pred eEEEecCCCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCcccccCCceEEEEecc
Q 025390 67 REFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQS 146 (253)
Q Consensus 67 ~~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi~~~s~G~t~v~L~~~ 146 (253)
++|+| ||+++ ++||++++|+|||+|+|+|.+++|+|+||++++|+.|+..+++..+++|+++|+|+ +
T Consensus 1 ~~y~V----gW~~~--------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~ 67 (91)
T 1f56_A 1 AVYNI----GWSFN--------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-R 67 (91)
T ss_dssp CEEEE----ECSSS--------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-S
T ss_pred CEEEE----eCCCC--------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-C
Confidence 36889 79874 68999999999999999999999999999999999999999999999999999996 8
Q ss_pred ccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 147 GPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 147 G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
|++||||++++||++||||+|+|.
T Consensus 68 g~~yFic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 68 GQNYFICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEC
T ss_pred CCeEEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.26 E-value=8.6e-12 Score=100.46 Aligned_cols=96 Identities=14% Similarity=0.176 Sum_probs=65.9
Q ss_pred cceeEEEecCC-CCCCCCCCCCCcchhhhhccCceeeCCEEEEEecC-----CCceEEEECcc-cCCC------------
Q 025390 64 SEAREFLIGGK-GNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYAS-----GQDSVLQVNKD-AYTN------------ 124 (253)
Q Consensus 64 a~A~~~~VGg~-~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~-----g~hsVv~V~k~-~Yds------------ 124 (253)
+.+.++.|+-. .+|.+.++ ..+++.||++.|+|.+ ..|+++..+.. ++..
T Consensus 14 ~~~~~v~V~~~~~~~~F~P~-----------~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (140)
T 1qhq_A 14 TPAQTVEVRAAPDALAFAQT-----------SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADA 82 (140)
T ss_dssp CCSEEEEEEBCSSSSSBSCS-----------EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGG
T ss_pred CCCEEEEEEEeCCCceEeCC-----------eEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccc
Confidence 34556777754 45888762 5789999999999875 57999887432 2211
Q ss_pred --C---CCCCCc---ccccCCc---eEEEEeccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 125 --C---STEYPV---ARYTDGH---TVFTFKQSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 125 --C---~~s~pi---~~~s~G~---t~v~L~~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
. +..+.+ .....|. .+|+++++|.|||+|++++||+.|||..|+|.
T Consensus 83 ~~~~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 83 LFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp TTCCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred cccCccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 1 000100 1123343 46778899999999999999999999999996
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.15 E-value=6.5e-11 Score=87.55 Aligned_cols=85 Identities=14% Similarity=0.211 Sum_probs=61.9
Q ss_pred EEEecCC-CCCCCCCCCCCcchhhhhccCceeeCCEEEEEecC-CCceEEEECcccCCCCCCCCCcccccCC-ceEEEEe
Q 025390 68 EFLIGGK-GNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYAS-GQDSVLQVNKDAYTNCSTEYPVARYTDG-HTVFTFK 144 (253)
Q Consensus 68 ~~~VGg~-~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~-g~hsVv~V~k~~YdsC~~s~pi~~~s~G-~t~v~L~ 144 (253)
+..||++ .+|.+.++ ..++++||+|.|++.. ..|+|.......+. ........| ...++++
T Consensus 4 ~v~~~~~~~~~~f~P~-----------~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~~~~~~f~ 67 (91)
T 1bxv_A 4 AIKMGADNGMLAFEPS-----------TIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGETFEATFS 67 (91)
T ss_dssp EEEESCTTSCSSEESS-----------EEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTCEEEEECC
T ss_pred EEEEecCCCccEEeCC-----------EEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCCEEEEEeC
Confidence 4567764 46777663 5689999999999874 67999876533221 011123445 4578899
Q ss_pred ccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 145 QSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 145 ~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
++|.|+|+|. .||..||+..|.|.
T Consensus 68 ~~G~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 68 EPGTYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp SCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CCEEEEEEeC--CCccCCCEEEEEEC
Confidence 9999999998 79999999999983
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.05 E-value=1.9e-10 Score=95.54 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=59.3
Q ss_pred cCceeeCCEEEEEecCC----CceEEEEC-cccCCCCCCCCCccc-------ccCCc---e--EEEEeccccEEEEeCCC
Q 025390 94 KNRFQIGDSIVFKYASG----QDSVLQVN-KDAYTNCSTEYPVAR-------YTDGH---T--VFTFKQSGPYYFISGNK 156 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g----~hsVv~V~-k~~YdsC~~s~pi~~-------~s~G~---t--~v~L~~~G~~YFICgv~ 156 (253)
..++++||+|+|++.+. .|++..++ ...|+.|.....+.. ...|. . .|++ ++|.|||+|+++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 46889999999999653 59999985 457888876544321 23343 3 4577 999999999999
Q ss_pred CCCCCCCeEEEEEe
Q 025390 157 DNCVNNEKLAVIVL 170 (253)
Q Consensus 157 gHC~~GmKlaI~V~ 170 (253)
+||+.|||..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999983
No 9
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.88 E-value=2.5e-09 Score=81.13 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=62.4
Q ss_pred eEEEecC-CCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecC-CCceEEEECc---ccCCCCCCCCCcccccCCce-E
Q 025390 67 REFLIGG-KGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYAS-GQDSVLQVNK---DAYTNCSTEYPVARYTDGHT-V 140 (253)
Q Consensus 67 ~~~~VGg-~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~-g~hsVv~V~k---~~YdsC~~s~pi~~~s~G~t-~ 140 (253)
.+..+|+ +.++.+.++ ..++++||+|.|.+.. ..|+|...+. ++++.+...........|.+ .
T Consensus 2 ~~V~m~~~~~~~~F~P~-----------~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~ 70 (98)
T 1iuz_A 2 QIVKLGGDDGSLAFVPS-----------KISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVV 70 (98)
T ss_dssp EEEEESCTTSCCSEESS-----------EEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEE
T ss_pred EEEEEecCCCCcEEeCC-----------EEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEE
Confidence 3455665 346777663 5679999999999875 4899876542 12333221111112344554 7
Q ss_pred EEEeccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 141 FTFKQSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 141 v~L~~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
++++++|.|+|+|.. ||+.||+..|.|.
T Consensus 71 ~tf~~~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 71 RKLSTPGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp EECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred EEcCCCEEEEEEchh--hccCCCEEEEEEC
Confidence 889999999999986 9999999999983
No 10
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.85 E-value=2.6e-08 Score=79.98 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=65.3
Q ss_pred ceeEEEecC-CCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCC----CceEEEECcc------------------c
Q 025390 65 EAREFLIGG-KGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASG----QDSVLQVNKD------------------A 121 (253)
Q Consensus 65 ~A~~~~VGg-~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g----~hsVv~V~k~------------------~ 121 (253)
...++.||. ..++.+.++ ..++++||++.|++.+. .|++...... +
T Consensus 17 ~~~~V~v~~~~~~~~F~p~-----------~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~ 85 (139)
T 2aan_A 17 GPVTIEIGSKGEELAFDKT-----------ELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAAN 85 (139)
T ss_dssp CCEEEEEEBCTTSSSBSCS-----------EEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGT
T ss_pred cCEEEEEEecCCccEEcCC-----------eEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhccccccc
Confidence 344667752 246777652 56799999999888643 6999887532 5
Q ss_pred CCCCCCCCCc---ccccCCce-EEEE--eccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 122 YTNCSTEYPV---ARYTDGHT-VFTF--KQSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 122 YdsC~~s~pi---~~~s~G~t-~v~L--~~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
|..|...+.+ .....|.+ .|++ +++|.|+|+|.+.+||. ||+-.|.|.
T Consensus 86 ~~p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 86 YLPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp TCCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred ccCcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 6666533221 22344543 4555 48999999999999999 999999883
No 11
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.82 E-value=6.5e-09 Score=78.45 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=60.9
Q ss_pred EEEecCC-CCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCC-CceEEEECcc---cCCCCCCC--CCcccccCCc-e
Q 025390 68 EFLIGGK-GNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASG-QDSVLQVNKD---AYTNCSTE--YPVARYTDGH-T 139 (253)
Q Consensus 68 ~~~VGg~-~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g-~hsVv~V~k~---~YdsC~~s--~pi~~~s~G~-t 139 (253)
+..+|++ .++.+.++ ..++++||+|.|++..+ .|+|...+.. +.+.+... ........|. .
T Consensus 2 ~v~m~~~~~~~~F~P~-----------~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~ 70 (99)
T 1plc_A 2 DVLLGADDGSLAFVPS-----------EFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETF 70 (99)
T ss_dssp EEEESCTTCCSCEESS-----------EEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEE
T ss_pred EEEEecCCCcceEeCC-----------EEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEE
Confidence 3556654 45766652 56899999999988764 7999876431 12222110 0011233444 4
Q ss_pred EEEEeccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 140 VFTFKQSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
.++++++|.|+|+|. .||+.||+..|+|.
T Consensus 71 ~~tf~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 71 EVALSNKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp EEECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEEECCCceEEEEcC--CCcccCCEEEEEEC
Confidence 789999999999999 79999999999983
No 12
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.82 E-value=5e-09 Score=79.68 Aligned_cols=90 Identities=18% Similarity=0.116 Sum_probs=60.4
Q ss_pred EEEecCC-CCCCCCCCCCCcchhhhhccCceeeCCEEEEEecC-CCceEEEECcccCC-----CCCCCCCcccccCCc-e
Q 025390 68 EFLIGGK-GNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYAS-GQDSVLQVNKDAYT-----NCSTEYPVARYTDGH-T 139 (253)
Q Consensus 68 ~~~VGg~-~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~-g~hsVv~V~k~~Yd-----sC~~s~pi~~~s~G~-t 139 (253)
+..||.+ .+|.+.++ ..++++||+|.|.+.. ..|+|...+....+ .............|. .
T Consensus 5 ~V~~~~~~~~~~F~P~-----------~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~~~~~pG~~~ 73 (106)
T 2gim_A 5 TVKLGSDKGLLVFEPA-----------KLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQST 73 (106)
T ss_dssp EEEESCTTCCSSEESS-----------EEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTCEE
T ss_pred EEEEEecCCcceEcCC-----------EEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccceeeCCCCEE
Confidence 4567653 56877653 5689999999999765 47998865322110 000000011233344 4
Q ss_pred EEEE---eccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 140 VFTF---KQSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 140 ~v~L---~~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
.+++ +++|.|+|+|. .||+.||+..|+|.
T Consensus 74 ~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 74 STTFPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp EEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 7888 89999999999 79999999999995
No 13
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.82 E-value=9.2e-09 Score=82.67 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=58.9
Q ss_pred cCCCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCc-ccccCCc-eEEEEeccccE
Q 025390 72 GGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPV-ARYTDGH-TVFTFKQSGPY 149 (253)
Q Consensus 72 Gg~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi-~~~s~G~-t~v~L~~~G~~ 149 (253)
|++.++.+.++ ..++++||+|.|.+....|+|+... .|...... .....|. ..++++++|.|
T Consensus 11 g~~g~~~F~P~-----------~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y 74 (123)
T 1pmy_A 11 GPGGMMVFDPA-----------LVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVY 74 (123)
T ss_dssp ETTEEEEEESS-----------EEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEE
T ss_pred cCCCCceEeCC-----------EEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEE
Confidence 54445666652 5679999999999987789998752 22211111 1112343 47899999999
Q ss_pred EEEeCCCCCCCCCCeEEEEEecC
Q 025390 150 YFISGNKDNCVNNEKLAVIVLAD 172 (253)
Q Consensus 150 YFICgv~gHC~~GmKlaI~V~a~ 172 (253)
+|+|. .||..||+..|+|...
T Consensus 75 ~y~C~--~H~~~gM~G~I~V~~~ 95 (123)
T 1pmy_A 75 GFKCA--PHYMMGMVALVVVGDK 95 (123)
T ss_dssp EEECS--TTTTTTCEEEEEESSC
T ss_pred EEEeC--CccccCCEEEEEEcCC
Confidence 99998 4999999999999753
No 14
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.77 E-value=1.5e-08 Score=81.46 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=58.2
Q ss_pred cCCCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCcc-cccCCc-eEEEEeccccE
Q 025390 72 GGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVA-RYTDGH-TVFTFKQSGPY 149 (253)
Q Consensus 72 Gg~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi~-~~s~G~-t~v~L~~~G~~ 149 (253)
|++.++.+.++ ..++++||+|.|.+....|+|.... .|....... ....|. ..++++++|.|
T Consensus 11 g~~g~~~F~P~-----------~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y 74 (123)
T 1paz_A 11 GAEGAMVFEPA-----------YIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAY 74 (123)
T ss_dssp ETTEEEEEESS-----------EEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEE
T ss_pred cCCCCceEeCC-----------EEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEE
Confidence 55445666652 5689999999999987789997631 222111100 111233 47899999999
Q ss_pred EEEeCCCCCCCCCCeEEEEEec
Q 025390 150 YFISGNKDNCVNNEKLAVIVLA 171 (253)
Q Consensus 150 YFICgv~gHC~~GmKlaI~V~a 171 (253)
+|+|. .||..||+..|+|..
T Consensus 75 ~y~C~--~H~~~gM~G~I~V~~ 94 (123)
T 1paz_A 75 LVKCT--PHYAMGMIALIAVGD 94 (123)
T ss_dssp EEECT--TTGGGTCEEEEEESS
T ss_pred EEEeC--CcccCCCEEEEEEcC
Confidence 99998 499999999999975
No 15
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.77 E-value=7.2e-09 Score=77.75 Aligned_cols=91 Identities=11% Similarity=0.127 Sum_probs=61.3
Q ss_pred eEEEecCC-CCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCC-CceEEEECc---ccCCCCCCCCCcccccCCc-eE
Q 025390 67 REFLIGGK-GNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASG-QDSVLQVNK---DAYTNCSTEYPVARYTDGH-TV 140 (253)
Q Consensus 67 ~~~~VGg~-~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g-~hsVv~V~k---~~YdsC~~s~pi~~~s~G~-t~ 140 (253)
.+..+|++ .++.+.++ ..++++||+|.|++..+ .|+|..... ++++.+...........|. ..
T Consensus 2 ~~V~m~~~~~~~~F~P~-----------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~ 70 (98)
T 2plt_A 2 ATVKLGADSGALEFVPK-----------TLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYS 70 (98)
T ss_dssp EEEEESCTTCCSSEESS-----------EEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEE
T ss_pred EEEEEecCCCCceEeCC-----------EEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEE
Confidence 45667643 45777652 46799999999988754 799876532 1222221110011234454 47
Q ss_pred EEEeccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 141 FTFKQSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 141 v~L~~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
++++++|.|+|+|. .||+.||+..|.|.
T Consensus 71 ~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 71 VKLTAAGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp EECCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred EEeCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 88999999999999 69999999999983
No 16
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.74 E-value=2.2e-08 Score=75.78 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=61.0
Q ss_pred EEEecCC-CCCCCCCCCCCcchhhhhccCceeeCCEEEEEecC-CCceEEEECcccCC----CCCCCCC----cccccCC
Q 025390 68 EFLIGGK-GNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYAS-GQDSVLQVNKDAYT----NCSTEYP----VARYTDG 137 (253)
Q Consensus 68 ~~~VGg~-~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~-g~hsVv~V~k~~Yd----sC~~s~p----i~~~s~G 137 (253)
+..||++ .++.+.++ ..++++||++.|++.. ..|+|.....++++ .|..... ......|
T Consensus 2 ~V~~g~~~~~~~F~P~-----------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG 70 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYPD-----------SITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDE 70 (102)
T ss_dssp EEEESCTTCCCCEESS-----------EEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTB
T ss_pred EEEEecCCCccEEeCC-----------EEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCC
Confidence 3567763 45666552 5689999999999765 47999875433331 1111111 1123334
Q ss_pred c-eEEEEeccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 138 H-TVFTFKQSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 138 ~-t~v~L~~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
. ..++++++|.|+|+|. .||..||+..|.|.
T Consensus 71 ~~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 71 PSFKAKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp CEEEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred CEEEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 3 4788899999999999 89999999999983
No 17
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.72 E-value=2e-08 Score=75.58 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=60.7
Q ss_pred EEEecC-CCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCC-CceEEEECc---ccCCCCCCC--CCcccccCCc-e
Q 025390 68 EFLIGG-KGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASG-QDSVLQVNK---DAYTNCSTE--YPVARYTDGH-T 139 (253)
Q Consensus 68 ~~~VGg-~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g-~hsVv~V~k---~~YdsC~~s--~pi~~~s~G~-t 139 (253)
+..||+ +.++.+.++ ..++++||+|.|++... .|+|...+. ++++.+... ........|. .
T Consensus 2 ~V~~~~~~~~~~F~P~-----------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~ 70 (99)
T 1byp_A 2 EVLLGSSDGGLAFVPS-----------DLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEY 70 (99)
T ss_dssp EEEESCTTSCCSEESS-----------EEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEE
T ss_pred EEEEecCCCcceEeCC-----------EEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEE
Confidence 355664 345776652 46799999999988754 799876542 122322110 0001233454 4
Q ss_pred EEEEeccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 140 VFTFKQSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
.++++++|.|+|+|. .||+.||+..|+|.
T Consensus 71 ~~~f~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 71 SVTLTEKGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp EEEECSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEEeCCCcEEEEEcC--CccccCCEEEEEEC
Confidence 789999999999999 79999999999983
No 18
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.69 E-value=4.2e-08 Score=73.53 Aligned_cols=88 Identities=16% Similarity=0.116 Sum_probs=59.5
Q ss_pred EEEecCC-CCCCCCCCCCCcchhhhhccCceeeCCEEEEEecC-CCceEEEECccc---CCCCCCCCCcccccCC-ceEE
Q 025390 68 EFLIGGK-GNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYAS-GQDSVLQVNKDA---YTNCSTEYPVARYTDG-HTVF 141 (253)
Q Consensus 68 ~~~VGg~-~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~-g~hsVv~V~k~~---YdsC~~s~pi~~~s~G-~t~v 141 (253)
+..+|++ .++.+.++ ..++++||++.|.+.. ..|+|....... .+.+... . .....| ...+
T Consensus 4 ~V~~~~~~~~~~F~P~-----------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~-~-~~~~~g~~~~~ 70 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEPK-----------ALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNT-K-LAIAPGSFYSV 70 (97)
T ss_dssp EEEEEETTTEEEEESS-----------EEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBC-C-CCCSCSCCEEE
T ss_pred EEEEeccCCccEEeCC-----------EEEECCCCEEEEEECCCCCeEEEEeCCCCcccccccccc-c-eecCCCCEEEE
Confidence 4556653 45666552 5689999999999865 379987754221 1111111 1 112333 4578
Q ss_pred EEeccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 142 TFKQSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 142 ~L~~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
+++++|.|+|+|. .||+.||+..|.|.
T Consensus 71 tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 71 TLGTPGTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp ECCSCSEEEEECS--STTTTTCEEEEEEC
T ss_pred EeCCCeEEEEEcc--ChhhcCCEEEEEEC
Confidence 8999999999999 89999999999983
No 19
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.68 E-value=2e-08 Score=81.48 Aligned_cols=85 Identities=14% Similarity=0.093 Sum_probs=60.1
Q ss_pred ecCCC-CCCCCCCCCCcchhhhhccCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCcc-cccCCc-eEEEEeccc
Q 025390 71 IGGKG-NWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVA-RYTDGH-TVFTFKQSG 147 (253)
Q Consensus 71 VGg~~-GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi~-~~s~G~-t~v~L~~~G 147 (253)
+|.+. +..+.++ ..++++||+|.|.+....|+|...+. +....... ....|. ..++++++|
T Consensus 11 ~g~~g~~~~F~P~-----------~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG 74 (127)
T 3tu6_A 11 KAADGRVMAFEPA-----------VIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPG 74 (127)
T ss_dssp ECTTSCEEEEESS-----------EEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCE
T ss_pred cCCCCcccEEeCC-----------EEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCe
Confidence 46544 4666653 56899999999999877899976432 11111110 011233 489999999
Q ss_pred cEEEEeCCCCCCCCCCeEEEEEecCC
Q 025390 148 PYYFISGNKDNCVNNEKLAVIVLADR 173 (253)
Q Consensus 148 ~~YFICgv~gHC~~GmKlaI~V~a~~ 173 (253)
.|+|+|. .||..||+-.|+|....
T Consensus 75 ~y~y~C~--~H~~~GM~G~I~V~~~~ 98 (127)
T 3tu6_A 75 VYMYQCA--PHVGMGMIGAIVVGEPA 98 (127)
T ss_dssp EEEEECT--TTGGGTCEEEEEESSCT
T ss_pred EEEEEeC--CCCcCCcEEEEEECcCC
Confidence 9999999 59999999999997643
No 20
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.66 E-value=3e-08 Score=79.91 Aligned_cols=70 Identities=17% Similarity=0.045 Sum_probs=52.9
Q ss_pred cCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCcccc--cCC-ceEEEEeccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 94 KNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARY--TDG-HTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi~~~--s~G-~t~v~L~~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
..++++||++.|.+....|+|...+. |..... ..+ ..| ...++++++|.|+|+|. .||..||+-.|+|.
T Consensus 22 ~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~-~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~ 93 (123)
T 3erx_A 22 FVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGV-ESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVG 93 (123)
T ss_dssp EEEECTTEEEEEEESSTTCCCEECTT-----SSCTTC-CCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEES
T ss_pred EEEECCCCEEEEEECCCCceEEEcCC-----cCCCCc-cceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence 67899999999999877899976431 221111 111 123 35899999999999998 69999999999997
Q ss_pred c
Q 025390 171 A 171 (253)
Q Consensus 171 a 171 (253)
.
T Consensus 94 ~ 94 (123)
T 3erx_A 94 D 94 (123)
T ss_dssp S
T ss_pred C
Confidence 5
No 21
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.57 E-value=5.4e-08 Score=73.05 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=59.1
Q ss_pred EEEecCC-CCCCCCCCCCCcchhhhhccCceeeCCEEEEEecC-CCceEEEECccc--CCCCCCCCCcccccCCc-eEEE
Q 025390 68 EFLIGGK-GNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYAS-GQDSVLQVNKDA--YTNCSTEYPVARYTDGH-TVFT 142 (253)
Q Consensus 68 ~~~VGg~-~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~-g~hsVv~V~k~~--YdsC~~s~pi~~~s~G~-t~v~ 142 (253)
+..+|.+ .++.+.++ ..++++||++.|.+.. ..|+|...+... -+.............|. ..++
T Consensus 4 ~V~~~~~~~~~~F~P~-----------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~t 72 (98)
T 1pcs_A 4 TVKMGSDSGALVFEPS-----------TVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTST 72 (98)
T ss_dssp EEEESCTTSCSSEESS-----------EEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEE
T ss_pred EEEEecCCCccEEeCC-----------EEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEE
Confidence 4566653 56776652 4689999999999765 479987643210 00000000011223444 4788
Q ss_pred EeccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 143 FKQSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 143 L~~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
++++|.|+|+|. .||..||+..|.|.
T Consensus 73 f~~~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 73 FTEPGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp CCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred cCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 899999999998 79999999999983
No 22
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.57 E-value=1.2e-07 Score=76.86 Aligned_cols=83 Identities=14% Similarity=0.085 Sum_probs=60.2
Q ss_pred ecCCC-CCCCCCCCCCcchhhhhccCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCc-ccccCCc-eEEEEeccc
Q 025390 71 IGGKG-NWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPV-ARYTDGH-TVFTFKQSG 147 (253)
Q Consensus 71 VGg~~-GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi-~~~s~G~-t~v~L~~~G 147 (253)
+|++. ++.+.|+ ..++++||++.|.+....|+|...+. +...... .....|. ..++++++|
T Consensus 10 ~g~~G~~~~F~P~-----------~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G 73 (124)
T 3ef4_A 10 KDDAGNTMVFQPG-----------FVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEG 73 (124)
T ss_dssp ECTTSCEEEEESS-----------EEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSE
T ss_pred cCCCCceeEEeCC-----------EEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCe
Confidence 44433 3888763 67899999999999888999987432 2221111 1112333 489999999
Q ss_pred cEEEEeCCCCCCCCCCeEEEEEec
Q 025390 148 PYYFISGNKDNCVNNEKLAVIVLA 171 (253)
Q Consensus 148 ~~YFICgv~gHC~~GmKlaI~V~a 171 (253)
.|.|+|. .||..||+-.|+|..
T Consensus 74 ~y~Y~C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 74 LYVLKCA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp EEEEECT--TTGGGTCEEEEEESS
T ss_pred EEEEEcC--CCCcCCCEEEEEECC
Confidence 9999997 599999999999976
No 23
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.08 E-value=6.7e-06 Score=66.18 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=47.5
Q ss_pred cCceeeCCEEEEEecCC-CceEEEECccc----CCCCCCCCCcccccCCc-eEEEEeccccEEEEeCCCCCCCCCCeEEE
Q 025390 94 KNRFQIGDSIVFKYASG-QDSVLQVNKDA----YTNCSTEYPVARYTDGH-TVFTFKQSGPYYFISGNKDNCVNNEKLAV 167 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g-~hsVv~V~k~~----YdsC~~s~pi~~~s~G~-t~v~L~~~G~~YFICgv~gHC~~GmKlaI 167 (253)
..++++||+|.|..... .|+|...+..+ |++ .....|. ..++++++|.|+|+|.. |. ||+..|
T Consensus 61 ~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g~~~~~s-------~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I 129 (132)
T 3c75_A 61 EVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKV 129 (132)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEE
T ss_pred EEEECCCCEEEEEECCCCceEEEEeCCCCCcccccc-------cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEE
Confidence 56799999999987543 69987654221 110 1233444 47888999999999987 76 999999
Q ss_pred EEe
Q 025390 168 IVL 170 (253)
Q Consensus 168 ~V~ 170 (253)
.|.
T Consensus 130 ~V~ 132 (132)
T 3c75_A 130 IVE 132 (132)
T ss_dssp EEC
T ss_pred EEC
Confidence 983
No 24
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=98.07 E-value=1e-05 Score=60.76 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=57.7
Q ss_pred EEEecCC-CCCCCCCCCCCcchhhhhccCceeeCCEEEEEecC-CCceEEEECcccCCCCCC-------CCCcccccCCc
Q 025390 68 EFLIGGK-GNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYAS-GQDSVLQVNKDAYTNCST-------EYPVARYTDGH 138 (253)
Q Consensus 68 ~~~VGg~-~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~-g~hsVv~V~k~~YdsC~~-------s~pi~~~s~G~ 138 (253)
+..||++ .++.+.+. ..+++.||+|.|+... ..|+|..-... ..+.. .........|.
T Consensus 4 ~V~~~~~~~~~~f~p~-----------~i~v~~Gd~V~~~N~~~~~H~v~~~~~~--~~~~~g~~~~~~~~~~~~i~pG~ 70 (105)
T 3cvb_A 4 TVKMGADSGLFQFEPA-----------NVTVHPGDTVKWVNNKLPPHNILFDDKQ--VPGASKELADKLSHSQLMFSPGE 70 (105)
T ss_dssp EEEESCTTCCSCEESS-----------EEEECTTEEEEEEECSSCCEEEEECTTS--SGGGCHHHHHHHCEEEEECSTTC
T ss_pred EEEEeecCCccEEeCC-----------EEEEcCCCEEEEEECCCCCCeEEEeCCC--CCcccccccccccccccccCCCC
Confidence 4567653 56776652 4679999999998653 46888764211 11100 00001223344
Q ss_pred -eEEEE---eccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 139 -TVFTF---KQSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 139 -t~v~L---~~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
..+++ +++|+|+|.|. .|+..||+-.|.|.
T Consensus 71 ~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 71 SYEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EEEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred eEEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 36778 79999999999 69999999999985
No 25
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.99 E-value=2.1e-05 Score=66.73 Aligned_cols=92 Identities=10% Similarity=0.075 Sum_probs=60.2
Q ss_pred eEEEecCCCCCCCCCCCCCcchhhhhccCce-eeCCEEEEEecC--C------CceEEEECcccCC--------------
Q 025390 67 REFLIGGKGNWGTPTDNTTLNYNQWAEKNRF-QIGDSIVFKYAS--G------QDSVLQVNKDAYT-------------- 123 (253)
Q Consensus 67 ~~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF-~VGDsLvF~Y~~--g------~hsVv~V~k~~Yd-------------- 123 (253)
.++.|+..+++.+.++ ..++ +.||.+.|.+.+ + .|+++..+..+++
T Consensus 43 ~~V~I~~~d~m~F~P~-----------~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~ 111 (167)
T 3ay2_A 43 CAATVESNDNMQFNTK-----------DIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDY 111 (167)
T ss_dssp CEEEEEECTTSCBSCS-----------EEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTT
T ss_pred eEEEEEeCCCceEecc-----------eEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhcccccc
Confidence 4677776667887763 4567 779987666643 2 2998876544321
Q ss_pred -CCCCCCCc---ccccCCce-EEEEe----ccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 124 -NCSTEYPV---ARYTDGHT-VFTFK----QSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 124 -sC~~s~pi---~~~s~G~t-~v~L~----~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
.=+..+.+ .....|.+ .|+++ ++|.|+|+|.+++|=+ |||-.|+|.
T Consensus 112 v~~~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 112 VKPDDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred ccccccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 10111111 12344544 67775 7899999999999988 999999985
No 26
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=97.98 E-value=5.6e-06 Score=62.79 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=45.1
Q ss_pred cCceeeCCEEEEEecCC---CceEEEECcccCCCCCCCCCcccccCCce---EEEEeccccEEEEeCCCCCCCCCCeEEE
Q 025390 94 KNRFQIGDSIVFKYASG---QDSVLQVNKDAYTNCSTEYPVARYTDGHT---VFTFKQSGPYYFISGNKDNCVNNEKLAV 167 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g---~hsVv~V~k~~YdsC~~s~pi~~~s~G~t---~v~L~~~G~~YFICgv~gHC~~GmKlaI 167 (253)
..++++||++.|.+.+. .|++..- .... ......|.+ .|+.+++|.|.|+|. .||..||+-.|
T Consensus 29 ~i~v~~G~tV~~~~~n~d~~~H~~~~~-~~~~--------~~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~i 97 (100)
T 4hci_A 29 VITIPINESTTLLLKNKGKSEHTFTIK-KLGI--------DVVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGKV 97 (100)
T ss_dssp EEEECTTSCEEEEEEECSSSCEEEEEG-GGTE--------EEEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEEE
T ss_pred EEEECCCCEEEEEEEcCCCceEEEEEe-cCCc--------ceeecCCcceeEEEecccCceEEEECc--cccCCCCEEEE
Confidence 57899999999987542 3665431 1111 011233432 456689999999996 59999999999
Q ss_pred EEe
Q 025390 168 IVL 170 (253)
Q Consensus 168 ~V~ 170 (253)
.|.
T Consensus 98 ~Ve 100 (100)
T 4hci_A 98 IVK 100 (100)
T ss_dssp EEC
T ss_pred EEC
Confidence 984
No 27
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.95 E-value=7.8e-05 Score=60.32 Aligned_cols=91 Identities=8% Similarity=0.112 Sum_probs=59.3
Q ss_pred EEEecCCCCCCCCCCCCCcchhhhhccCceeeC-CEEEEEecC-C-------CceEEEECccc----------------C
Q 025390 68 EFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIG-DSIVFKYAS-G-------QDSVLQVNKDA----------------Y 122 (253)
Q Consensus 68 ~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF~VG-DsLvF~Y~~-g-------~hsVv~V~k~~----------------Y 122 (253)
+..|+..+++.+.++ ..+++.| |.+.|.+.+ + .|+++..+..+ |
T Consensus 4 ~v~i~~~d~m~F~p~-----------~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~ 72 (129)
T 1cuo_A 4 ETTVTSGDTMTYSTR-----------SISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNF 72 (129)
T ss_dssp EEEEEECSSSCCSCS-----------EEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTT
T ss_pred EEEEEeCCCceEccC-----------eEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccc
Confidence 455665566777763 5678999 977777643 2 39988776442 2
Q ss_pred CCCCCCCCc---ccccCCce-EEEEe-----ccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 123 TNCSTEYPV---ARYTDGHT-VFTFK-----QSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 123 dsC~~s~pi---~~~s~G~t-~v~L~-----~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
..=+..+-+ .....|.+ .++++ ++|.|+|+|.+++|=+ |||-.|+|.
T Consensus 73 v~~~~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 73 VTPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp SCTTCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred cccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 110111111 12345543 56665 7899999999999988 899999985
No 28
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.94 E-value=1.5e-05 Score=63.65 Aligned_cols=69 Identities=16% Similarity=0.077 Sum_probs=49.5
Q ss_pred cCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCcc-cccCC-ceEEEEeccccEEEEeCCCCCCCCCCeEEEEEec
Q 025390 94 KNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVA-RYTDG-HTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVLA 171 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi~-~~s~G-~t~v~L~~~G~~YFICgv~gHC~~GmKlaI~V~a 171 (253)
..++++||+|.|......|+|..... +-...... ....| ...++++++|.|+|+|.. |+. |+-.|.|..
T Consensus 22 ~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~~ 92 (122)
T 2ux6_A 22 SLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVGD 92 (122)
T ss_dssp EEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEeC
Confidence 56799999999999777899976531 11111111 11123 347899999999999987 887 999999975
No 29
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.88 E-value=2.5e-05 Score=59.81 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=54.9
Q ss_pred eeEEEecCCCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCC-CceEEEECccc----CCCCCCCCCcccccCCc-e
Q 025390 66 AREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASG-QDSVLQVNKDA----YTNCSTEYPVARYTDGH-T 139 (253)
Q Consensus 66 A~~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g-~hsVv~V~k~~----YdsC~~s~pi~~~s~G~-t 139 (253)
+.++.|.- .+|.+.+. ..++++||+|.|+.... .|+|...+..+ |++. ....|. .
T Consensus 18 a~~~~V~~-~~~~F~P~-----------~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~ 78 (105)
T 2ov0_A 18 DGAIVVDI-AKMKYETP-----------ELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAY 78 (105)
T ss_dssp TTCEEEEE-ETTEESSS-----------EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEE
T ss_pred CcCEEEEE-eecEEcCC-----------EEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEE
Confidence 34454442 35776652 56799999999987644 69987643211 2221 123344 4
Q ss_pred EEEEeccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 140 VFTFKQSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
.++++++|.|+|.|.. |- ||+-.|.|.
T Consensus 79 ~~tf~~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 79 SLTFTEAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp EEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 7888999999999987 64 999999883
No 30
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.83 E-value=4.3e-05 Score=58.83 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=47.3
Q ss_pred cCceeeCCEEEEEecCC-CceEEEECccc----CCCCCCCCCcccccCCc-eEEEEeccccEEEEeCCCCCCCCCCeEEE
Q 025390 94 KNRFQIGDSIVFKYASG-QDSVLQVNKDA----YTNCSTEYPVARYTDGH-TVFTFKQSGPYYFISGNKDNCVNNEKLAV 167 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g-~hsVv~V~k~~----YdsC~~s~pi~~~s~G~-t~v~L~~~G~~YFICgv~gHC~~GmKlaI 167 (253)
..++++||+|.|..... .|+|...+... |++ .....|. ..++++++|.|.|+|.. |. ||+..|
T Consensus 35 ~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~s-------~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~I 103 (106)
T 1id2_A 35 EVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKV 103 (106)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEE
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeCCCCCcccccc-------cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEEE
Confidence 56799999999996543 69987643220 111 1233444 47889999999999987 87 999999
Q ss_pred EEe
Q 025390 168 IVL 170 (253)
Q Consensus 168 ~V~ 170 (253)
.|.
T Consensus 104 ~V~ 106 (106)
T 1id2_A 104 IVE 106 (106)
T ss_dssp EEC
T ss_pred EEC
Confidence 883
No 31
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.66 E-value=0.00027 Score=57.07 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=56.6
Q ss_pred EEEecCCCCCCCCCCCCCcchhhhhccCce-eeCCEEEEEecC-C-------CceEEEECcc----------------cC
Q 025390 68 EFLIGGKGNWGTPTDNTTLNYNQWAEKNRF-QIGDSIVFKYAS-G-------QDSVLQVNKD----------------AY 122 (253)
Q Consensus 68 ~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF-~VGDsLvF~Y~~-g-------~hsVv~V~k~----------------~Y 122 (253)
+..|+..+++.+.++ ..++ +.||++.|.+.+ + .|+++..+.+ +|
T Consensus 3 ~v~v~~~d~m~F~p~-----------~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~ 71 (128)
T 2iaa_C 3 DVSIEGNDSMQFNTK-----------SIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDY 71 (128)
T ss_dssp EEEEEECTTSCBSCS-----------EEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTT
T ss_pred EEEEEeCCCceEecC-----------EEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccc
Confidence 345565567777652 3345 559977777643 2 3998876543 22
Q ss_pred CCCCCCCCc---ccccCCce-EEEEe----ccc-cEEEEeCCCCCCCCCCeEEEEEe
Q 025390 123 TNCSTEYPV---ARYTDGHT-VFTFK----QSG-PYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 123 dsC~~s~pi---~~~s~G~t-~v~L~----~~G-~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
..=+-.+-+ .....|.+ .++++ ++| .|.|+|.+++|=+ |||-.|+|.
T Consensus 72 ~~~~~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 72 VKAGDERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred cccccchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 211111111 12345543 66665 678 5999999999988 999999985
No 32
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.63 E-value=0.00023 Score=57.52 Aligned_cols=91 Identities=10% Similarity=0.107 Sum_probs=57.7
Q ss_pred EEEecCCCCCCCCCCCCCcchhhhhccCce-eeCCEEEEEecC--C------CceEEEECcccCC---------------
Q 025390 68 EFLIGGKGNWGTPTDNTTLNYNQWAEKNRF-QIGDSIVFKYAS--G------QDSVLQVNKDAYT--------------- 123 (253)
Q Consensus 68 ~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF-~VGDsLvF~Y~~--g------~hsVv~V~k~~Yd--------------- 123 (253)
+..|+..+++.+.++ ..++ +.||++.|.+.+ . .|+++..+.++.+
T Consensus 4 ~v~v~~~d~m~F~p~-----------~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~ 72 (128)
T 1nwp_A 4 KVTVDSTDQMSFNTK-----------DIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQY 72 (128)
T ss_dssp EEEEEECTTSCBSCS-----------EEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTT
T ss_pred EEEEEeCCCccEecC-----------EEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccc
Confidence 456666567888763 4567 789987777743 2 2998876543221
Q ss_pred -CCCCCCCc---ccccCCc-eEEEEe----cccc-EEEEeCCCCCCCCCCeEEEEEe
Q 025390 124 -NCSTEYPV---ARYTDGH-TVFTFK----QSGP-YYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 124 -sC~~s~pi---~~~s~G~-t~v~L~----~~G~-~YFICgv~gHC~~GmKlaI~V~ 170 (253)
.=+..+-+ .....|. ..++++ ++|. |.|+|.+++|=+ |||-.|+|.
T Consensus 73 ~~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 73 LKDGDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred cccccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 10111111 1234555 367765 4676 999999999998 999999883
No 33
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.57 E-value=2.6e-05 Score=67.10 Aligned_cols=78 Identities=29% Similarity=0.366 Sum_probs=52.9
Q ss_pred ceeeCCEEEEE---ecC------CCceEEEECcccCCCCCCCC-Ccccc--c--CCceEEEEe-------------ccc-
Q 025390 96 RFQIGDSIVFK---YAS------GQDSVLQVNKDAYTNCSTEY-PVARY--T--DGHTVFTFK-------------QSG- 147 (253)
Q Consensus 96 tF~VGDsLvF~---Y~~------g~hsVv~V~k~~YdsC~~s~-pi~~~--s--~G~t~v~L~-------------~~G- 147 (253)
..++||.|-|- |+. ..+.|++|++++|++|+... +...+ + .+...|++. ++|
T Consensus 25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~ 104 (178)
T 1iko_P 25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK 104 (178)
T ss_dssp CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 34679999886 332 23678999999999999763 22112 2 233444442 367
Q ss_pred cEEEEeCCC-----------CCCCC-CCeEEEEEecCC
Q 025390 148 PYYFISGNK-----------DNCVN-NEKLAVIVLADR 173 (253)
Q Consensus 148 ~~YFICgv~-----------gHC~~-GmKlaI~V~a~~ 173 (253)
.|||||.-. |+|.. +|||.|.|....
T Consensus 105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~ 142 (178)
T 1iko_P 105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDA 142 (178)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC-
T ss_pred ceEEEecCCcccccccccCCCccccceeEEEEEeecCC
Confidence 899999754 68986 899999995543
No 34
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.56 E-value=0.00037 Score=56.28 Aligned_cols=91 Identities=9% Similarity=0.108 Sum_probs=55.9
Q ss_pred EEEecCCCCCCCCCCCCCcchhhhhccCce-eeCCEEEEEecC--C------CceEEEECcc----------------cC
Q 025390 68 EFLIGGKGNWGTPTDNTTLNYNQWAEKNRF-QIGDSIVFKYAS--G------QDSVLQVNKD----------------AY 122 (253)
Q Consensus 68 ~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF-~VGDsLvF~Y~~--g------~hsVv~V~k~----------------~Y 122 (253)
+..|+..+++.+.++ ..++ +.||.+.|.+.+ . .|+++..+.+ +|
T Consensus 4 ~v~v~~~d~m~F~p~-----------~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~ 72 (129)
T 2ccw_A 4 EATVESNDAMQYNVK-----------EIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDY 72 (129)
T ss_dssp EEEEEECTTSCBSCS-----------EEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTT
T ss_pred EEEEEeCCCccEecc-----------eEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccc
Confidence 455665566777652 3345 559976666643 2 3998877544 22
Q ss_pred CCCCCCCCc---ccccCCce-EEEEe----cccc-EEEEeCCCCCCCCCCeEEEEEe
Q 025390 123 TNCSTEYPV---ARYTDGHT-VFTFK----QSGP-YYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 123 dsC~~s~pi---~~~s~G~t-~v~L~----~~G~-~YFICgv~gHC~~GmKlaI~V~ 170 (253)
..=+-.+-+ .....|.+ .++++ ++|. |+|+|.+++|=+ |||-.|+|.
T Consensus 73 ~~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 73 VKAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred cccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 211111111 12345543 56665 4665 999999999988 999999985
No 35
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.51 E-value=0.00022 Score=61.40 Aligned_cols=77 Identities=29% Similarity=0.443 Sum_probs=50.9
Q ss_pred CceeeCCEEEEE---ecC-------CCceEEEECcccCCCCCCCCCcc-cc-------cCCceEEEEe------------
Q 025390 95 NRFQIGDSIVFK---YAS-------GQDSVLQVNKDAYTNCSTEYPVA-RY-------TDGHTVFTFK------------ 144 (253)
Q Consensus 95 ~tF~VGDsLvF~---Y~~-------g~hsVv~V~k~~YdsC~~s~pi~-~~-------s~G~t~v~L~------------ 144 (253)
..+++||.|-+- |+. ....++.|++++|++|+..+... .+ ..|..+|++.
T Consensus 52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E 131 (177)
T 2x11_B 52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 131 (177)
T ss_dssp EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence 458899999775 432 23457799999999999754321 12 1244455543
Q ss_pred -ccc-cEEEEeCCC-----CCCCCCCeEEEEEecCCC
Q 025390 145 -QSG-PYYFISGNK-----DNCVNNEKLAVIVLADRS 174 (253)
Q Consensus 145 -~~G-~~YFICgv~-----gHC~~GmKlaI~V~a~~s 174 (253)
++| .||||++-. +-| |||.|.|...+.
T Consensus 132 F~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~ 165 (177)
T 2x11_B 132 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS 165 (177)
T ss_dssp CCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred ccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence 567 688897532 345 999999976553
No 36
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=97.10 E-value=0.0013 Score=56.88 Aligned_cols=76 Identities=26% Similarity=0.480 Sum_probs=49.0
Q ss_pred CceeeCCEEEEE---ecC--------CCceEEEECcccCCCCCCCC-Ccccc------c-CCceEEEEe-----------
Q 025390 95 NRFQIGDSIVFK---YAS--------GQDSVLQVNKDAYTNCSTEY-PVARY------T-DGHTVFTFK----------- 144 (253)
Q Consensus 95 ~tF~VGDsLvF~---Y~~--------g~hsVv~V~k~~YdsC~~s~-pi~~~------s-~G~t~v~L~----------- 144 (253)
..+++||.|-+- |+. ....+++|++++|++|+... +...+ . .|..+|++.
T Consensus 50 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~Gl 129 (182)
T 3czu_B 50 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 129 (182)
T ss_dssp EEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCe
Confidence 467899999775 432 12457899999999999764 22222 1 233444433
Q ss_pred --ccc-cEEEEeC----CCCCCCCCCeEEEEEecCC
Q 025390 145 --QSG-PYYFISG----NKDNCVNNEKLAVIVLADR 173 (253)
Q Consensus 145 --~~G-~~YFICg----v~gHC~~GmKlaI~V~a~~ 173 (253)
++| .||||+. .+|.| |||.|.|....
T Consensus 130 EF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~ 162 (182)
T 3czu_B 130 EFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKI 162 (182)
T ss_dssp CCCTTCEEEEEEEESSSCCCSC---CEEEEEECC--
T ss_pred eEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCC
Confidence 567 6889985 34566 89999997543
No 37
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=97.02 E-value=0.0015 Score=54.13 Aligned_cols=76 Identities=28% Similarity=0.468 Sum_probs=50.0
Q ss_pred CceeeCCEEEEE---ecC-------CCceEEEECcccCCCCCCCCCc-cccc-------CCceEEEEe------------
Q 025390 95 NRFQIGDSIVFK---YAS-------GQDSVLQVNKDAYTNCSTEYPV-ARYT-------DGHTVFTFK------------ 144 (253)
Q Consensus 95 ~tF~VGDsLvF~---Y~~-------g~hsVv~V~k~~YdsC~~s~pi-~~~s-------~G~t~v~L~------------ 144 (253)
..+++||.|-+- |+. ....+..|++++|++|+..... ..+. .|..+|++.
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 457889999775 432 2345779999999999975432 1221 244455543
Q ss_pred -ccc-cEEEEeCC-----CCCCCCCCeEEEEEecCC
Q 025390 145 -QSG-PYYFISGN-----KDNCVNNEKLAVIVLADR 173 (253)
Q Consensus 145 -~~G-~~YFICgv-----~gHC~~GmKlaI~V~a~~ 173 (253)
++| .||||++- ++-| |||.|.|....
T Consensus 103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~ 135 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 135 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred ecCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence 477 68889753 2346 99999997643
No 38
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=96.98 E-value=0.00089 Score=55.62 Aligned_cols=76 Identities=25% Similarity=0.260 Sum_probs=50.9
Q ss_pred CceeeCCEEEEE---ecC---------CCceEEEECcccCCCCCCC-CCccccc----CCceEEEEe-------------
Q 025390 95 NRFQIGDSIVFK---YAS---------GQDSVLQVNKDAYTNCSTE-YPVARYT----DGHTVFTFK------------- 144 (253)
Q Consensus 95 ~tF~VGDsLvF~---Y~~---------g~hsVv~V~k~~YdsC~~s-~pi~~~s----~G~t~v~L~------------- 144 (253)
..+++||.|-+- |+. ....+..|++++|++|+.. ++-..+. .+..+|++.
T Consensus 22 i~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF 101 (141)
T 3d12_B 22 LYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF 101 (141)
T ss_dssp ECCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence 357889999876 332 2345788999999999986 2322221 233444433
Q ss_pred ccc-cEEEEeCC-----------CCCCCC-CCeEEEEEe
Q 025390 145 QSG-PYYFISGN-----------KDNCVN-NEKLAVIVL 170 (253)
Q Consensus 145 ~~G-~~YFICgv-----------~gHC~~-GmKlaI~V~ 170 (253)
++| .||||+.- +|-|.. +|||.|.|.
T Consensus 102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 467 68999863 356875 899999985
No 39
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=96.61 E-value=0.0041 Score=47.48 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=43.9
Q ss_pred cCceeeCCEEEEEecCC---CceEEEECcccCCCCCCCCCcccccCCce-EEEE--eccccEEEEeCCCCCCCC-CCeEE
Q 025390 94 KNRFQIGDSIVFKYASG---QDSVLQVNKDAYTNCSTEYPVARYTDGHT-VFTF--KQSGPYYFISGNKDNCVN-NEKLA 166 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g---~hsVv~V~k~~YdsC~~s~pi~~~s~G~t-~v~L--~~~G~~YFICgv~gHC~~-GmKla 166 (253)
..+++.||.+.|++.+. .|++..-+ .+. ......|.+ .+++ +++|.|+|.|.. ||.. +|+..
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~i~~-~~~--------~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~ 107 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFSIDA-FGV--------QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT 107 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEEEGG-GTE--------EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEEEcC-CCc--------eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEE
Confidence 46799999999987542 47764322 110 112334543 4555 899999999987 7753 39999
Q ss_pred EEEe
Q 025390 167 VIVL 170 (253)
Q Consensus 167 I~V~ 170 (253)
|.|.
T Consensus 108 i~V~ 111 (112)
T 1iby_A 108 LNVV 111 (112)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9885
No 40
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=96.59 E-value=0.0016 Score=53.96 Aligned_cols=75 Identities=29% Similarity=0.364 Sum_probs=49.4
Q ss_pred ceeeCCEEEEEec---CC------CceEEEECcccCCCCCCCC-Ccccc--c--CCceEEEEe-------------ccc-
Q 025390 96 RFQIGDSIVFKYA---SG------QDSVLQVNKDAYTNCSTEY-PVARY--T--DGHTVFTFK-------------QSG- 147 (253)
Q Consensus 96 tF~VGDsLvF~Y~---~g------~hsVv~V~k~~YdsC~~s~-pi~~~--s--~G~t~v~L~-------------~~G- 147 (253)
..++||.|-+-=. .+ ...+..|++++|++|+... +...+ + .+...|++. ++|
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 3467999988632 21 3567889999999999763 22222 1 344445443 567
Q ss_pred cEEEEeCCC-----------CCCCC-CCeEEEEEe
Q 025390 148 PYYFISGNK-----------DNCVN-NEKLAVIVL 170 (253)
Q Consensus 148 ~~YFICgv~-----------gHC~~-GmKlaI~V~ 170 (253)
.||||+.-. |-|.. +|||.|.|.
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~ 138 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG 138 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEET
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEec
Confidence 688888633 46875 899999985
No 41
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=96.35 E-value=0.0098 Score=48.16 Aligned_cols=66 Identities=24% Similarity=0.328 Sum_probs=44.5
Q ss_pred cCceeeCCEEEEEecCC--CceEEEECcccCCCCCCCCCcccccCCc---eEEEEeccccEEEEeCCCCCCC---CCCeE
Q 025390 94 KNRFQIGDSIVFKYASG--QDSVLQVNKDAYTNCSTEYPVARYTDGH---TVFTFKQSGPYYFISGNKDNCV---NNEKL 165 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g--~hsVv~V~k~~YdsC~~s~pi~~~s~G~---t~v~L~~~G~~YFICgv~gHC~---~GmKl 165 (253)
..++.+||.+.|...+. .|++.. ..-+.+ .....|. -.++++++|.|+|.|.. +|. .+|+.
T Consensus 61 ~l~Vp~G~~V~~~vts~DV~Hsf~i-p~~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M~g 129 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSPDVIHGFHV-EGTNIN--------VEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMFG 129 (135)
T ss_dssp SEEEETTSEEEEEEEBSSSCEEEEE-TTSSCE--------EEECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTCEE
T ss_pred EEEEcCCCEEEEEEEeCCccceEEe-cCCCce--------eEeCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCCEE
Confidence 56799999999998653 365543 211110 1122343 36888999999999976 343 78999
Q ss_pred EEEEe
Q 025390 166 AVIVL 170 (253)
Q Consensus 166 aI~V~ 170 (253)
.|.|.
T Consensus 130 ~v~V~ 134 (135)
T 2cua_A 130 TIVVK 134 (135)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 42
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=96.16 E-value=0.012 Score=49.57 Aligned_cols=76 Identities=25% Similarity=0.430 Sum_probs=48.2
Q ss_pred CceeeCCEEEEE---ecC--------CCceEEEECcccCCCCCCCCCcc-ccc-------CCceEEEEe-----------
Q 025390 95 NRFQIGDSIVFK---YAS--------GQDSVLQVNKDAYTNCSTEYPVA-RYT-------DGHTVFTFK----------- 144 (253)
Q Consensus 95 ~tF~VGDsLvF~---Y~~--------g~hsVv~V~k~~YdsC~~s~pi~-~~s-------~G~t~v~L~----------- 144 (253)
..+++||.|-+- |+. ....+.+|++++|++|+...... .+. .|..+|++.
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 458889999876 422 12347799999999999865321 221 133344432
Q ss_pred --ccc-cEEEEeCCC-----CCCCCCCeEEEEEecCC
Q 025390 145 --QSG-PYYFISGNK-----DNCVNNEKLAVIVLADR 173 (253)
Q Consensus 145 --~~G-~~YFICgv~-----gHC~~GmKlaI~V~a~~ 173 (253)
++| .||||+.-. +-| |||.|.|....
T Consensus 112 EF~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~ 145 (157)
T 2wo3_B 112 EFRPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ 145 (157)
T ss_dssp CCCTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred eeeCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence 467 699998643 346 58888876544
No 43
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=94.98 E-value=0.044 Score=44.98 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=46.3
Q ss_pred CceeeCCEEEEE---ecC--------CCceEEEECcccCCCCCCCC-Ccccc------c-CCceEEEEe-----------
Q 025390 95 NRFQIGDSIVFK---YAS--------GQDSVLQVNKDAYTNCSTEY-PVARY------T-DGHTVFTFK----------- 144 (253)
Q Consensus 95 ~tF~VGDsLvF~---Y~~--------g~hsVv~V~k~~YdsC~~s~-pi~~~------s-~G~t~v~L~----------- 144 (253)
..+++||.|-+- |+. ....+..|++++|++|+... +...+ . .|..+|++.
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~ 101 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 101 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence 457889999774 322 12456789999999999765 22222 1 344455443
Q ss_pred --ccc-cEEEEeCCCCCCC-CCCeEEEEEe
Q 025390 145 --QSG-PYYFISGNKDNCV-NNEKLAVIVL 170 (253)
Q Consensus 145 --~~G-~~YFICgv~gHC~-~GmKlaI~V~ 170 (253)
++| .||||+.-..|=. .=+||.|.|.
T Consensus 102 EF~pG~~YY~ISt~~~~~~~~cl~l~v~v~ 131 (132)
T 3hei_B 102 EFKEGHSYYYISKPIHQHEDRCLRLKVTVK 131 (132)
T ss_dssp CCCTTCEEEEEEEESSCCCCSCCEEEEEEC
T ss_pred eecCCCcEEEEEccCCCCCCcceEEEEEEE
Confidence 467 6888886322111 1168888773
No 44
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=94.90 E-value=0.29 Score=39.63 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=51.0
Q ss_pred EEecCCCCCCCCCCCCCcchhhhhccCceee-CCEEEEEecC-C-------CceEEEECcc----------------cCC
Q 025390 69 FLIGGKGNWGTPTDNTTLNYNQWAEKNRFQI-GDSIVFKYAS-G-------QDSVLQVNKD----------------AYT 123 (253)
Q Consensus 69 ~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF~V-GDsLvF~Y~~-g-------~hsVv~V~k~----------------~Yd 123 (253)
..|-..++..+.++ ..++.. |+++.|.+.+ | .|+++..+.+ +|-
T Consensus 5 v~i~~~d~M~F~p~-----------~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~ 73 (125)
T 3fsa_A 5 VDIQGNDQMQFNTN-----------AITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYL 73 (125)
T ss_dssp EEEEBCTTSCBSCS-----------EEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTS
T ss_pred EEEEccCCcEEecC-----------EEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccC
Confidence 34444456666542 334443 9999777753 3 3999887432 221
Q ss_pred CCCCCCCc---ccccCCc-eEEEEe-----ccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390 124 NCSTEYPV---ARYTDGH-TVFTFK-----QSGPYYFISGNKDNCVNNEKLAVIVL 170 (253)
Q Consensus 124 sC~~s~pi---~~~s~G~-t~v~L~-----~~G~~YFICgv~gHC~~GmKlaI~V~ 170 (253)
.=+..+-+ .....|. ..++++ ++|.|-|+|+ +|= |||-.|.|.
T Consensus 74 ~~~d~~via~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 74 KPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp CTTCTTCCEECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred CCCCccceeccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 11111111 1234565 367766 4599999999 786 999999883
No 45
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=93.32 E-value=0.1 Score=48.47 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=50.6
Q ss_pred cCceeeCCEEEEEecCC---CceEEEECcccCCCCCCCCCcccccCCce---EEEEeccccEEEEeCCCCCCCCCCeEEE
Q 025390 94 KNRFQIGDSIVFKYASG---QDSVLQVNKDAYTNCSTEYPVARYTDGHT---VFTFKQSGPYYFISGNKDNCVNNEKLAV 167 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g---~hsVv~V~k~~YdsC~~s~pi~~~s~G~t---~v~L~~~G~~YFICgv~gHC~~GmKlaI 167 (253)
..+++.||+|+|++.+. .|++..-.......|. ...|.+ .|+++++|+|||.|.+.+|=..||+..|
T Consensus 56 ~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~-------i~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~i 128 (447)
T 2dv6_A 56 TLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIV-------NGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNI 128 (447)
T ss_dssp CEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCB-------CSTTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEEE
T ss_pred eEEEcCCCEEEEEEEcCCCCceEEEEccCCccccee-------cCCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEEE
Confidence 56889999999988542 3766432222222333 223432 4666889999999999889888999999
Q ss_pred EEecCC
Q 025390 168 IVLADR 173 (253)
Q Consensus 168 ~V~a~~ 173 (253)
.|....
T Consensus 129 ~V~~~~ 134 (447)
T 2dv6_A 129 QVLPGN 134 (447)
T ss_dssp EEESSC
T ss_pred EEeCCc
Confidence 997654
No 46
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=92.03 E-value=0.48 Score=39.87 Aligned_cols=65 Identities=25% Similarity=0.335 Sum_probs=41.1
Q ss_pred cCceeeCCEEEEEecCC--CceEEEECcccCCCCCCCCCcc-cccCCc---eEEEEeccccEEEEeCCCCCCC---CCCe
Q 025390 94 KNRFQIGDSIVFKYASG--QDSVLQVNKDAYTNCSTEYPVA-RYTDGH---TVFTFKQSGPYYFISGNKDNCV---NNEK 164 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g--~hsVv~V~k~~YdsC~~s~pi~-~~s~G~---t~v~L~~~G~~YFICgv~gHC~---~GmK 164 (253)
...+.+|+.+.|...+. .|+... .. + .++ ....|. ..++.+++|.||+.|.. .|. .+|+
T Consensus 94 ~l~VP~G~~Vr~~vTS~DViHsf~I-P~--l-------gik~da~PG~~n~~~~~~~kpG~y~g~Cse--~CG~~Hs~M~ 161 (168)
T 3s8f_B 94 PIEVPQGAEIVFKITSPDVIHGFHV-EG--T-------NINVEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMF 161 (168)
T ss_dssp SEEEETTSEEEEEEECSSSCEEEEE-TT--S-------SCEEEECTTBCEEEEEECCSCEEEEEECCS--CCSTTGGGCE
T ss_pred EEEEeCCCeEEEEEecCCceEEEEE-CC--C-------CeEEEecCCceeEEEEEeCCCEEEEEECCc--CCCCCcCCCE
Confidence 45678888888887653 243332 11 1 111 112343 36778999999999986 454 4699
Q ss_pred EEEEEe
Q 025390 165 LAVIVL 170 (253)
Q Consensus 165 laI~V~ 170 (253)
..|.|.
T Consensus 162 g~V~V~ 167 (168)
T 3s8f_B 162 GTIVVK 167 (168)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999985
No 47
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=91.78 E-value=0.31 Score=48.46 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=45.5
Q ss_pred cCceeeCCEEEEEecCC------CceEEEECcccCCCCCCCCCcccccCCce---EEEEeccccEEEEeCC---CCCCCC
Q 025390 94 KNRFQIGDSIVFKYASG------QDSVLQVNKDAYTNCSTEYPVARYTDGHT---VFTFKQSGPYYFISGN---KDNCVN 161 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g------~hsVv~V~k~~YdsC~~s~pi~~~s~G~t---~v~L~~~G~~YFICgv---~gHC~~ 161 (253)
..++++||.+.|...+. .|++..-+ .+.+ .....|.+ .|+++++|.|||.|.. ..| .
T Consensus 514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~gv~--------~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~ 582 (595)
T 1fwx_A 514 SFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YGVA--------MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--M 582 (595)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETT-TTEE--------EEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--T
T ss_pred EEEEECCCEEEEEEEeCCCCCCceeeEEecC-CCcc--------eeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--c
Confidence 45789999999998652 46664322 1110 11233443 6778999999999984 246 4
Q ss_pred CCeEEEEEecC
Q 025390 162 NEKLAVIVLAD 172 (253)
Q Consensus 162 GmKlaI~V~a~ 172 (253)
||+..|.|...
T Consensus 583 gM~G~IiV~p~ 593 (595)
T 1fwx_A 583 EMRGRMLVEPK 593 (595)
T ss_dssp TCEEEEEEECC
T ss_pred CCEEEEEEEcC
Confidence 99999999754
No 48
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.32 E-value=0.51 Score=47.40 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=45.0
Q ss_pred cCceeeCCEEEEEecCC------CceEEEECcccCCCCCCCCCcccccCCce---EEEEeccccEEEEeCCCCCCCCC--
Q 025390 94 KNRFQIGDSIVFKYASG------QDSVLQVNKDAYTNCSTEYPVARYTDGHT---VFTFKQSGPYYFISGNKDNCVNN-- 162 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g------~hsVv~V~k~~YdsC~~s~pi~~~s~G~t---~v~L~~~G~~YFICgv~gHC~~G-- 162 (253)
..++.+||.+.|...+. .|++..-+ +. .......|.+ .|+.+++|.|||+|.. +|-.+
T Consensus 559 eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---lG------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~Hs 627 (638)
T 3sbq_A 559 EFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---HG------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHALHM 627 (638)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETT---TT------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTTCT
T ss_pred EEEEecCceeEEEEecCCcCCCceeeeEecC---CC------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCcc
Confidence 56799999999987652 46654321 10 0011233543 5777999999999987 56654
Q ss_pred -CeEEEEEec
Q 025390 163 -EKLAVIVLA 171 (253)
Q Consensus 163 -mKlaI~V~a 171 (253)
|+..|.|..
T Consensus 628 ~M~G~ViVEP 637 (638)
T 3sbq_A 628 EMVGRMMVEP 637 (638)
T ss_dssp TCEEEEEEEC
T ss_pred cceEEEEEec
Confidence 999999864
No 49
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=77.48 E-value=2.6 Score=37.59 Aligned_cols=74 Identities=11% Similarity=0.125 Sum_probs=47.5
Q ss_pred CceeeCCEEEEEecCC-----CceEEEECcccCCCCCCCCCcccccCCce---EEEEeccccEEEEeCCCC-----CCCC
Q 025390 95 NRFQIGDSIVFKYASG-----QDSVLQVNKDAYTNCSTEYPVARYTDGHT---VFTFKQSGPYYFISGNKD-----NCVN 161 (253)
Q Consensus 95 ~tF~VGDsLvF~Y~~g-----~hsVv~V~k~~YdsC~~s~pi~~~s~G~t---~v~L~~~G~~YFICgv~g-----HC~~ 161 (253)
.+++.||+|++++.+. -|.+..-...+.+.- ........|.+ .|+++++|++||-|...+ |=..
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~~ 142 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVS 142 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHT
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhhC
Confidence 5789999999988654 355543221111110 01112344543 566789999999998864 6678
Q ss_pred CCeEEEEEec
Q 025390 162 NEKLAVIVLA 171 (253)
Q Consensus 162 GmKlaI~V~a 171 (253)
||.-.+.|..
T Consensus 143 Gl~G~~iV~~ 152 (333)
T 1mzy_A 143 GMAGCIMVLP 152 (333)
T ss_dssp TCEEEEEEEC
T ss_pred CCEEEEEEcc
Confidence 9999998864
No 50
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=75.51 E-value=3.2 Score=36.97 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=47.0
Q ss_pred CceeeCCEEEEEecCC-----CceEEEECcccCCCCCCCCCcccccCCce---EEEEeccccEEEEeCCCC----CCCCC
Q 025390 95 NRFQIGDSIVFKYASG-----QDSVLQVNKDAYTNCSTEYPVARYTDGHT---VFTFKQSGPYYFISGNKD----NCVNN 162 (253)
Q Consensus 95 ~tF~VGDsLvF~Y~~g-----~hsVv~V~k~~YdsC~~s~pi~~~s~G~t---~v~L~~~G~~YFICgv~g----HC~~G 162 (253)
.+++.||+|++++.+. .|++..-.....+. ..++.....|.+ .|+++++|++||-|...+ |=..|
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~~~---~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~G 143 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALG---GAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG 143 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGG---GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECCCCCCCC---CcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhCC
Confidence 4688999999888653 46654421110000 011112344543 566689999999998753 55689
Q ss_pred CeEEEEEecC
Q 025390 163 EKLAVIVLAD 172 (253)
Q Consensus 163 mKlaI~V~a~ 172 (253)
|.-.+.|...
T Consensus 144 l~G~liV~~~ 153 (336)
T 1oe1_A 144 MSGTLMVLPR 153 (336)
T ss_dssp CEEEEEEECT
T ss_pred CeEEEEEecC
Confidence 9999998753
No 51
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=71.53 E-value=3.5 Score=36.92 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=45.8
Q ss_pred cCceeeCCEEEEEecCC-----CceEEEECcccCCCCCCCCCcccccCCce---EEEEeccccEEEEeCCC---CCCCCC
Q 025390 94 KNRFQIGDSIVFKYASG-----QDSVLQVNKDAYTNCSTEYPVARYTDGHT---VFTFKQSGPYYFISGNK---DNCVNN 162 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g-----~hsVv~V~k~~YdsC~~s~pi~~~s~G~t---~v~L~~~G~~YFICgv~---gHC~~G 162 (253)
..+++.||++++++.+. .|++..=--...|. ... ......|.+ .|+.+++|++||-|... .|=..|
T Consensus 71 ~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG--~~~-~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~G 147 (327)
T 1kbv_A 71 MIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG--GAA-ATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANG 147 (327)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG--GTT-TTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred eEEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC--CCc-ceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcc
Confidence 35789999999988644 35553310000110 000 111334543 56668999999999763 355689
Q ss_pred CeEEEEEecC
Q 025390 163 EKLAVIVLAD 172 (253)
Q Consensus 163 mKlaI~V~a~ 172 (253)
|.-.|.|...
T Consensus 148 l~G~~iV~~~ 157 (327)
T 1kbv_A 148 MYGLILVEPK 157 (327)
T ss_dssp CEEEEEEECT
T ss_pred eEEEEEEecC
Confidence 9999998753
No 52
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=67.92 E-value=3 Score=38.57 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=45.4
Q ss_pred cCceeeCCEEEEEecCC-----CceEEEECcccCCCCCCCCC-cccccCCce---EEEEeccccEEEEeC---CCCCCCC
Q 025390 94 KNRFQIGDSIVFKYASG-----QDSVLQVNKDAYTNCSTEYP-VARYTDGHT---VFTFKQSGPYYFISG---NKDNCVN 161 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g-----~hsVv~V~k~~YdsC~~s~p-i~~~s~G~t---~v~L~~~G~~YFICg---v~gHC~~ 161 (253)
..+++.||+|++++.+. .|++..=--...|. .+ ......|.+ .|+.+++|++||-|- ...|=..
T Consensus 61 ~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~dG----~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~ 136 (442)
T 2zoo_A 61 FIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGG----GAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIAN 136 (442)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG----GGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred cEEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCCC----CCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhC
Confidence 35789999999988654 45554310000110 00 011233443 566678999999994 3456678
Q ss_pred CCeEEEEEecC
Q 025390 162 NEKLAVIVLAD 172 (253)
Q Consensus 162 GmKlaI~V~a~ 172 (253)
||.-.+.|...
T Consensus 137 Gl~G~~iv~~~ 147 (442)
T 2zoo_A 137 GMYGLILVEPK 147 (442)
T ss_dssp TCEEEEEEECT
T ss_pred ccEEEEEEeCC
Confidence 99999888743
No 53
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=67.00 E-value=5.3 Score=39.02 Aligned_cols=73 Identities=19% Similarity=0.390 Sum_probs=45.5
Q ss_pred cCceeeCCEEEEEecCC--CceEEEE-CcccCCCCCCCCCcccccC--CceEEEEeccccEEEEeCCCCCCCCCC-eEEE
Q 025390 94 KNRFQIGDSIVFKYASG--QDSVLQV-NKDAYTNCSTEYPVARYTD--GHTVFTFKQSGPYYFISGNKDNCVNNE-KLAV 167 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g--~hsVv~V-~k~~YdsC~~s~pi~~~s~--G~t~v~L~~~G~~YFICgv~gHC~~Gm-KlaI 167 (253)
+.-++-|-.|+|.=-.. ..-++.+ +-.....|...- ..|+. =+.+..|+ +|.|||..+..+-|++|- ++.|
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 488 (491)
T 3l6w_A 412 KVVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPP--FSFHAFELGKMYSVE-SGDYFMTASTTELCNDNNLRIHV 488 (491)
T ss_pred eeEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCC--CccCcccccceEecC-CCceEecCChHHHHhCCceeEEE
Confidence 44567788888743211 1112222 445566688642 11221 12355554 899999999999999998 9999
Q ss_pred EE
Q 025390 168 IV 169 (253)
Q Consensus 168 ~V 169 (253)
.|
T Consensus 489 ~~ 490 (491)
T 3l6w_A 489 HV 490 (491)
T ss_pred Ee
Confidence 87
No 54
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=62.04 E-value=8.9 Score=34.15 Aligned_cols=75 Identities=9% Similarity=0.125 Sum_probs=46.9
Q ss_pred CceeeCCEEEEEecCC-----CceEEEECcccCCCCCCCCCcccccCCce---EEEEeccccEEEEeCCCC----CCCCC
Q 025390 95 NRFQIGDSIVFKYASG-----QDSVLQVNKDAYTNCSTEYPVARYTDGHT---VFTFKQSGPYYFISGNKD----NCVNN 162 (253)
Q Consensus 95 ~tF~VGDsLvF~Y~~g-----~hsVv~V~k~~YdsC~~s~pi~~~s~G~t---~v~L~~~G~~YFICgv~g----HC~~G 162 (253)
.+++.||+|++++.+. .|.+..-.....+ + ..+......|.+ .|+++++|++||-|...+ |=..|
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~--~-~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~G 149 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGAL--G-GGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSG 149 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--G-GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCC--C-CccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhCc
Confidence 5789999999988754 3555431111000 0 011112344543 567779999999998764 56689
Q ss_pred CeEEEEEecC
Q 025390 163 EKLAVIVLAD 172 (253)
Q Consensus 163 mKlaI~V~a~ 172 (253)
|.-.+.|...
T Consensus 150 l~G~~iV~~~ 159 (340)
T 2bw4_A 150 MNGAIMVLPR 159 (340)
T ss_dssp CEEEEEEECT
T ss_pred CEEEEEEccC
Confidence 9998888653
No 55
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=57.40 E-value=7.1 Score=29.45 Aligned_cols=16 Identities=38% Similarity=0.970 Sum_probs=12.2
Q ss_pred CceeeCCEEEEE-ecCC
Q 025390 95 NRFQIGDSIVFK-YASG 110 (253)
Q Consensus 95 ~tF~VGDsLvF~-Y~~g 110 (253)
+.|++||.|+|+ |+.+
T Consensus 36 r~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 36 RNFQVGDILILEEYMNG 52 (83)
T ss_dssp SCCCTTCEEEEEEEETT
T ss_pred cCCCCCCEEEEEEccCC
Confidence 459999999995 6543
No 56
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=49.82 E-value=21 Score=31.19 Aligned_cols=79 Identities=10% Similarity=0.129 Sum_probs=46.0
Q ss_pred cCceeeCCEEEEEecCC---CceEEE--ECcccCCCCCCCCCcccccCCce---EEEEeccccEEEEeCCC---CCCCCC
Q 025390 94 KNRFQIGDSIVFKYASG---QDSVLQ--VNKDAYTNCSTEYPVARYTDGHT---VFTFKQSGPYYFISGNK---DNCVNN 162 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g---~hsVv~--V~k~~YdsC~~s~pi~~~s~G~t---~v~L~~~G~~YFICgv~---gHC~~G 162 (253)
..+++.||.|++++.+. .|++.. +.....|.=... .......|.+ .|+.+++|++||-|-.. .|=..|
T Consensus 67 ~i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~~~~DG~p~~-~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 145 (288)
T 3gdc_A 67 TLWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGTPGI-GAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKG 145 (288)
T ss_dssp EEEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCCTTS-TTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred cEEEeCCCEEEEEEEeCCCCcccEEeccccccccCCCCCc-cceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCc
Confidence 35789999999988643 234432 111111110000 0011223443 56778999999999875 356689
Q ss_pred CeEEEEEecCC
Q 025390 163 EKLAVIVLADR 173 (253)
Q Consensus 163 mKlaI~V~a~~ 173 (253)
|.-.|.|....
T Consensus 146 l~G~liV~~~~ 156 (288)
T 3gdc_A 146 LYGGFIVEPKE 156 (288)
T ss_dssp CEEEEEEECSS
T ss_pred CeEEEEEeCCc
Confidence 99999886543
No 57
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=49.40 E-value=8.3 Score=34.30 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=29.1
Q ss_pred EEEEeccccEEEEeCCCCCC-CCCCeEEEEEecC
Q 025390 140 VFTFKQSGPYYFISGNKDNC-VNNEKLAVIVLAD 172 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC-~~GmKlaI~V~a~ 172 (253)
.|+.+++|.++|.|-...|+ +.||.-.+.|...
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~ 319 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGE 319 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCC
Confidence 56778899999999999999 9999999999753
No 58
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=49.30 E-value=8.2 Score=29.00 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=19.5
Q ss_pred hhhhccCceeeCCEEEEEecCCCceEEEE
Q 025390 89 NQWAEKNRFQIGDSIVFKYASGQDSVLQV 117 (253)
Q Consensus 89 ~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V 117 (253)
.+-+..+..++||.|+|+|... +.+.|
T Consensus 70 ~~Fv~~~~L~~GD~lvF~~~~~--~~f~V 96 (104)
T 1yel_A 70 ENFVKDNNLEDGKYLQFIYDRD--RTFYV 96 (104)
T ss_dssp HHHHHHHTCCTTCEEEEEECSS--SEEEE
T ss_pred HHHHHHcCCCCCCEEEEEEcCC--CeEEE
Confidence 3345678899999999999753 34444
No 59
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=49.20 E-value=9.7 Score=30.85 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=21.4
Q ss_pred hhhhccCceeeCCEEEEEecCCCceEEEE
Q 025390 89 NQWAEKNRFQIGDSIVFKYASGQDSVLQV 117 (253)
Q Consensus 89 ~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V 117 (253)
..-+..+..++||.++|.+.....-+++|
T Consensus 109 ~~Fv~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 109 YEFTLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHHHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHHHHcCCCCCCEEEEEEecCCceEEEE
Confidence 34456789999999999998644335555
No 60
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=48.41 E-value=14 Score=32.15 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=23.9
Q ss_pred EEEEeccccEEEEeCCCCCCCC---CCeEEEEEe
Q 025390 140 VFTFKQSGPYYFISGNKDNCVN---NEKLAVIVL 170 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC~~---GmKlaI~V~ 170 (253)
.++.+++|.||..|.. .|.. .|++.|.|.
T Consensus 84 ~~~~~~pG~y~g~CsE--~CG~~Hs~M~~~v~vv 115 (205)
T 1cyx_A 84 HLIANEPGTYDGICAE--ICGPGHSGMKFKAIAT 115 (205)
T ss_dssp EECCSSSEEEEEEECS--CCSTTSTTCCEEEEEE
T ss_pred EEEeCCCeEEEEEccc--ccccchhhceEEEEEE
Confidence 5667899999999976 5665 499999998
No 61
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=46.82 E-value=17 Score=32.20 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=29.3
Q ss_pred EEEEeccccEEEEeCCCCCC-CCCCeEEEEEecCC
Q 025390 140 VFTFKQSGPYYFISGNKDNC-VNNEKLAVIVLADR 173 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC-~~GmKlaI~V~a~~ 173 (253)
.|+.+++|.|+|.|....|+ ..||.-.+.|....
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~ 320 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKW 320 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCC
Confidence 57778899999999988898 89999999997543
No 62
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=45.81 E-value=14 Score=33.58 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=25.2
Q ss_pred EEEEeccccEEEEeCCCCCCCC---CCeEEEEEecC
Q 025390 140 VFTFKQSGPYYFISGNKDNCVN---NEKLAVIVLAD 172 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC~~---GmKlaI~V~a~ 172 (253)
.++.+++|.||..|.. .|.. .|++.|.|...
T Consensus 232 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs~ 265 (298)
T 3hb3_B 232 WFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVSQ 265 (298)
T ss_dssp EEECSSSEEEEECCCS--CCSTTTTSCCEEEEEECH
T ss_pred EEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEcH
Confidence 5778999999999976 5654 59999999765
No 63
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=45.26 E-value=7.2 Score=34.22 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=28.1
Q ss_pred EEEEeccccEEEEeCCCCCCCCCCeEEEEEec
Q 025390 140 VFTFKQSGPYYFISGNKDNCVNNEKLAVIVLA 171 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC~~GmKlaI~V~a 171 (253)
.++.+.+|.+.|.|-+..|=+.||.-.++|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 45567899999999999999999999999864
No 64
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=43.57 E-value=17 Score=32.30 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=25.2
Q ss_pred EEEEeccccEEEEeCCCCCCCCC---CeEEEEEecC
Q 025390 140 VFTFKQSGPYYFISGNKDNCVNN---EKLAVIVLAD 172 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC~~G---mKlaI~V~a~ 172 (253)
.++.+++|.||..|+. .|..| |++.|.|...
T Consensus 214 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~~ 247 (262)
T 2gsm_B 214 WFRAEREGIFFGQCSE--LCGISHAYMPITVKVVSE 247 (262)
T ss_dssp EEECCSCEEEEECCCS--CCSTTGGGCCEEEEEECH
T ss_pred EEecCCcEEEEEEChH--hcccCcccCeEEEEEEcH
Confidence 6778999999999976 67765 9998888653
No 65
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=43.29 E-value=41 Score=30.27 Aligned_cols=30 Identities=7% Similarity=0.010 Sum_probs=26.5
Q ss_pred eccccEEEEeCCCCCCCCCCeEEEEEecCC
Q 025390 144 KQSGPYYFISGNKDNCVNNEKLAVIVLADR 173 (253)
Q Consensus 144 ~~~G~~YFICgv~gHC~~GmKlaI~V~a~~ 173 (253)
+.+|.++|-|-+..|=..||...+.|....
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~ 308 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPD 308 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCC
Confidence 479999999999999999999999997643
No 66
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=42.55 E-value=29 Score=25.24 Aligned_cols=46 Identities=17% Similarity=0.398 Sum_probs=31.2
Q ss_pred cCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCc--ccccCCceEEEEe
Q 025390 94 KNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPV--ARYTDGHTVFTFK 144 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi--~~~s~G~t~v~L~ 144 (253)
..+|++||++.=+| +|.+..+++-=.+++ ..+++ ..|++ .+.-+|.
T Consensus 7 ~~~~~vgd~VmaRW-~Gd~~yYparI~Si~---s~~~~Y~V~fKd-gT~e~L~ 54 (66)
T 2l8d_A 7 NRKYADGEVVMGRW-PGSVLYYEVQVTSYD---DASHLYTVKYKD-GTELALK 54 (66)
T ss_dssp SSSSCSSCEEEEEC-TTSSCEEEEEEEEEE---TTTTEEEEEETT-SCEEEEE
T ss_pred ceEeecCCEEEEEc-CCCccceEEEEEEec---cCCceEEEEecC-CCEEeec
Confidence 45799999999999 787777776444444 34443 45777 4555554
No 67
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=41.15 E-value=3.5 Score=36.56 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=20.4
Q ss_pred EEEEeccccEEEEeCCCCCCCCCCeEEEEEecC
Q 025390 140 VFTFKQSGPYYFISGNKDNCVNNEKLAVIVLAD 172 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC~~GmKlaI~V~a~ 172 (253)
.|+.+++|.++|.|-+..|-..||...+.|...
T Consensus 269 ~~~~~~pG~~~~hch~~~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 269 NMTVSPEGRWTIASLIPRHFQAGMQAYIDIKNC 301 (306)
T ss_dssp -------CCCCCBCCSTTTGGGTCBCCC-----
T ss_pred EEEcCCCeEEEEEeCChHHHhcCCeEEEEEecC
Confidence 567788999999999999999999999988654
No 68
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=40.51 E-value=16 Score=31.70 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=24.5
Q ss_pred EEEEeccccEEEEeCCCCCCCCC---CeEEEEEec
Q 025390 140 VFTFKQSGPYYFISGNKDNCVNN---EKLAVIVLA 171 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC~~G---mKlaI~V~a 171 (253)
.++.+++|.||..|+. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEc
Confidence 5677899999999976 67765 898888865
No 69
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=35.75 E-value=41 Score=24.52 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=31.1
Q ss_pred cCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCc--ccccCCceEEEEe
Q 025390 94 KNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPV--ARYTDGHTVFTFK 144 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi--~~~s~G~t~v~L~ 144 (253)
..+|++||++.=+|. |.+..+++-=..++ ..+++ ..|++ .+.-+|.
T Consensus 10 ~~~f~vgd~VmaRW~-Gd~~yYparItSit---s~~~~Y~VkfKd-gT~e~L~ 57 (68)
T 2dig_A 10 SRKFADGEVVRGRWP-GSSLYYEVEILSHD---STSQLYTVKYKD-GTELELK 57 (68)
T ss_dssp CCSSCSSCEEEEECT-TTCCEEEEEEEEEE---TTTTEEEEECTT-SCEEEEE
T ss_pred ceEeecCCEEEEEcc-CCccceEEEEEEec---cCCceEEEEecC-CCEEEec
Confidence 457999999999998 77777766444444 34453 45777 4555554
No 70
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=34.49 E-value=40 Score=30.13 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred ceeeCCEEEEEecCCC--------ceEEEECc--ccCCCCCCCCCcccccCCceEEEEeccccEEEEeCCCC--CCC-CC
Q 025390 96 RFQIGDSIVFKYASGQ--------DSVLQVNK--DAYTNCSTEYPVARYTDGHTVFTFKQSGPYYFISGNKD--NCV-NN 162 (253)
Q Consensus 96 tF~VGDsLvF~Y~~g~--------hsVv~V~k--~~YdsC~~s~pi~~~s~G~t~v~L~~~G~~YFICgv~g--HC~-~G 162 (253)
+++.||++++++.+.- |.+.+... .|--.=....++..-.+=...|+++++|+|||-|.... |=. .|
T Consensus 38 ~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vtq~~I~PG~~~~y~f~~~~~Gt~wyH~H~~~~~q~~~~G 117 (339)
T 2zwn_A 38 HVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVTQQPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHVGVRG 117 (339)
T ss_dssp EEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHTTTSC
T ss_pred EEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCccccCccCCCCeEEEEEECCCCEEEEEEecCCchhhhhcCC
Q ss_pred CeEEEEEecCCC
Q 025390 163 EKLAVIVLADRS 174 (253)
Q Consensus 163 mKlaI~V~a~~s 174 (253)
|.-.+.|.....
T Consensus 118 l~G~liV~p~~~ 129 (339)
T 2zwn_A 118 MWGPLIVDPKQP 129 (339)
T ss_dssp CEEEEEEECSSC
T ss_pred ceEeEEecCCCc
No 71
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=33.73 E-value=17 Score=28.44 Aligned_cols=11 Identities=36% Similarity=0.767 Sum_probs=9.9
Q ss_pred CceeeCCEEEE
Q 025390 95 NRFQIGDSIVF 105 (253)
Q Consensus 95 ~tF~VGDsLvF 105 (253)
+.+++||.|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 46899999999
No 72
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=33.07 E-value=45 Score=32.12 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=47.2
Q ss_pred CceeeCCEEEEEecCCC----ceEEE----ECc-ccCC------CCCCCCCcccccC-Cce---EEEEeccccEEEEeCC
Q 025390 95 NRFQIGDSIVFKYASGQ----DSVLQ----VNK-DAYT------NCSTEYPVARYTD-GHT---VFTFKQSGPYYFISGN 155 (253)
Q Consensus 95 ~tF~VGDsLvF~Y~~g~----hsVv~----V~k-~~Yd------sC~~s~pi~~~s~-G~t---~v~L~~~G~~YFICgv 155 (253)
.+++.||+|+.++.+.- ++|.. +.. ...| .|-. .. |.+ .|+++++|+|||=|-.
T Consensus 69 i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~~tq~~I-------~P~G~~~~Y~f~~~q~GT~wYH~H~ 141 (559)
T 2q9o_A 69 IVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPI-------PPKGGQRTYRWRARQYGTSWYHSHF 141 (559)
T ss_dssp EEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSCCBTTTBCCB-------CTTTEEEEEEEECCSCEEEEEEECS
T ss_pred EEEeCCCEEEEEEEeCCCCCCceEEcCCCccCCCCCcCCCCccccCcc-------CCCCCeEEEEEECCCCEEEEEEEcc
Confidence 57889999999986432 34422 111 1111 1221 23 443 6778899999999999
Q ss_pred CCCCCCCCeEEEEEecC
Q 025390 156 KDNCVNNEKLAVIVLAD 172 (253)
Q Consensus 156 ~gHC~~GmKlaI~V~a~ 172 (253)
..|=..||--.+.|...
T Consensus 142 ~~q~~~Gl~G~liV~~~ 158 (559)
T 2q9o_A 142 SAQYGNGVVGTIQINGP 158 (559)
T ss_dssp TTGGGGTCEEEEEEECC
T ss_pred cchhcCCceEEEEecCC
Confidence 88888899988888754
No 73
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=31.91 E-value=29 Score=30.90 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=27.7
Q ss_pred EEEEeccccEEEEeCCCCCC-CCCCeEEEEEecC
Q 025390 140 VFTFKQSGPYYFISGNKDNC-VNNEKLAVIVLAD 172 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC-~~GmKlaI~V~a~ 172 (253)
.|+.+++|.++|.|-...|| ..||...+.|...
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~ 308 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGA 308 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCC
Confidence 56778899999999999998 7899888888643
No 74
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=30.90 E-value=15 Score=22.75 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=12.9
Q ss_pred ccccceeeccccCCC
Q 025390 7 PLRLQCFRFLTPLPS 21 (253)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (253)
.-|..||||-+|+|+
T Consensus 18 a~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 18 ARRSECNMCNTPKYA 32 (33)
T ss_dssp TTCSBCSSSCCBTTC
T ss_pred cccccccccCCcCCC
Confidence 458899999999985
No 75
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=30.64 E-value=20 Score=32.82 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=40.7
Q ss_pred cCceeeCCEEEEEecCC--CceEEEECcccCCCCCCCCCcccc-cCCc---eEEEEeccccEEEEeCCCCCCCC---CCe
Q 025390 94 KNRFQIGDSIVFKYASG--QDSVLQVNKDAYTNCSTEYPVARY-TDGH---TVFTFKQSGPYYFISGNKDNCVN---NEK 164 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g--~hsVv~V~k~~YdsC~~s~pi~~~-s~G~---t~v~L~~~G~~YFICgv~gHC~~---GmK 164 (253)
.-.+-+|..+.|+-.+. -|+-.. ..- .++.. -.|. ..++.+++|.||..|.. .|.. .|+
T Consensus 152 ~l~lP~g~~V~~~lTS~DViHsf~I-P~l---------g~k~DaiPGr~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~ 219 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSNSVMNSFFI-PRL---------GSQIYAMAGMQTRLHLIANEPGTYDGISAS--YSGPGFSGMK 219 (315)
T ss_dssp BCCCCSSSEEEEEECBSSSCEEEEE-GGG---------TEEEEECBTSCEEEEEECCSCBCCEEBCCS--CCSTTTTTCC
T ss_pred eEEEeCCCEEEEEEEeCCccceeee-ccc---------CcEEeecCCcceeeEEecCCCeEEEEeccc--cchhhHHhcc
Confidence 34678888888888753 133322 110 01110 1233 25778999999999976 6665 499
Q ss_pred EEEEEe
Q 025390 165 LAVIVL 170 (253)
Q Consensus 165 laI~V~ 170 (253)
+.|.|.
T Consensus 220 ~~v~vv 225 (315)
T 1fft_B 220 FKAIAT 225 (315)
T ss_dssp EECCBC
T ss_pred ceEEEe
Confidence 999888
No 76
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=30.24 E-value=34 Score=24.82 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.7
Q ss_pred ccCceeeCCEEEEEecCC
Q 025390 93 EKNRFQIGDSIVFKYASG 110 (253)
Q Consensus 93 s~~tF~VGDsLvF~Y~~g 110 (253)
.+++|.+||.|+|--..+
T Consensus 26 ~rN~f~~GD~iEi~~P~g 43 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEI 43 (89)
T ss_dssp ESSCBCTTCEEEEESTTS
T ss_pred EcCCcCCCCEEEEEcCCC
Confidence 378899999999886655
No 77
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=28.59 E-value=46 Score=29.57 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred ceeeCCEEEEEecCCC--------ceEEEEC--cccCCCCCCCCCcccccCCceEEEEeccccEEEEeCCCCCC---CCC
Q 025390 96 RFQIGDSIVFKYASGQ--------DSVLQVN--KDAYTNCSTEYPVARYTDGHTVFTFKQSGPYYFISGNKDNC---VNN 162 (253)
Q Consensus 96 tF~VGDsLvF~Y~~g~--------hsVv~V~--k~~YdsC~~s~pi~~~s~G~t~v~L~~~G~~YFICgv~gHC---~~G 162 (253)
+++.||+|++++.+.. |.+.+.. ..|--.=....++.--.+-.-.|+.+++|++||-|....+= ..|
T Consensus 37 ~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t~~~i~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~~~~G 116 (318)
T 3g5w_A 37 HVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMRG 116 (318)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHHHHSC
T ss_pred EEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccccccCCCCCEEEEEEEcCCCEEEEEEccCChhhhhccCC
Q ss_pred CeEEEEEecCCC
Q 025390 163 EKLAVIVLADRS 174 (253)
Q Consensus 163 mKlaI~V~a~~s 174 (253)
|.-.+.|.....
T Consensus 117 l~G~lIV~~~~~ 128 (318)
T 3g5w_A 117 MWGPLIVEPKNP 128 (318)
T ss_dssp CEEEEEEECSSC
T ss_pred CEEEEEEcCCCc
No 78
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=28.05 E-value=52 Score=29.07 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=27.4
Q ss_pred EEEEeccccEEEEeCCC-CCCCCCCeEEEEEecCC
Q 025390 140 VFTFKQSGPYYFISGNK-DNCVNNEKLAVIVLADR 173 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~-gHC~~GmKlaI~V~a~~ 173 (253)
.|+.+++|.++|.|... .|=..||.-.|.|....
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~ 326 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEW 326 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCCC
Confidence 46778899999999887 46588999889887543
No 79
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=27.86 E-value=18 Score=23.92 Aligned_cols=16 Identities=19% Similarity=0.056 Sum_probs=13.5
Q ss_pred ccccceeeccccCCCC
Q 025390 7 PLRLQCFRFLTPLPSL 22 (253)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (253)
.-|..||||-+|+|..
T Consensus 28 a~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 28 ARRTSCDRCGREKTTG 43 (45)
T ss_dssp SSCSBCSSSCCBCCCC
T ss_pred cccccccccCCcCCCC
Confidence 4589999999999863
No 80
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=27.80 E-value=74 Score=30.35 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=48.1
Q ss_pred cCceeeCCEEEEEecCCC----ceEEE----ECcc-cCCCCC-CC-CCcccccCCce---EEEEeccccEEEEeCCCCCC
Q 025390 94 KNRFQIGDSIVFKYASGQ----DSVLQ----VNKD-AYTNCS-TE-YPVARYTDGHT---VFTFKQSGPYYFISGNKDNC 159 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g~----hsVv~----V~k~-~YdsC~-~s-~pi~~~s~G~t---~v~L~~~G~~YFICgv~gHC 159 (253)
..+++.||+|+.++.+.- ++|.. +... ..|.=. .+ .+ ...|.+ .|+++++|+|||=|-...+=
T Consensus 35 ~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vtq~~---I~PG~s~tY~f~~~~~GT~wYHsH~~~q~ 111 (552)
T 1aoz_A 35 TIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCA---INPGETFFYNFTVDNPGTFFYHGHLGMQR 111 (552)
T ss_dssp CEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTBCC---BCTTCEEEEEEECCSCEEEEEEECSTTTG
T ss_pred cEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCcccccCC---cCCCCeEEEEEECCCCEEEEEEECchhHH
Confidence 357899999999986532 33322 1111 011100 00 01 123442 67778999999999988888
Q ss_pred CCCCeEEEEEecCC
Q 025390 160 VNNEKLAVIVLADR 173 (253)
Q Consensus 160 ~~GmKlaI~V~a~~ 173 (253)
..||--.+.|....
T Consensus 112 ~~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 112 SAGLYGSLIVDPPQ 125 (552)
T ss_dssp GGTCEEEEEEECCT
T ss_pred hccCeeeEEEeCCc
Confidence 88999999997653
No 81
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=27.68 E-value=75 Score=30.38 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=47.1
Q ss_pred cCceeeCCEEEEEecCCC----ceEEE----ECc-ccCC------CCCCCCCcccccCCce---EEEEe-ccccEEEEeC
Q 025390 94 KNRFQIGDSIVFKYASGQ----DSVLQ----VNK-DAYT------NCSTEYPVARYTDGHT---VFTFK-QSGPYYFISG 154 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g~----hsVv~----V~k-~~Yd------sC~~s~pi~~~s~G~t---~v~L~-~~G~~YFICg 154 (253)
..+++.||.|+.++.+.- ++|.. +.. ...| .|- + ..|.+ .|+++ +.|+|||=|-
T Consensus 35 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq~p----I---~PG~~~~Y~f~~~~~~GT~wYH~H 107 (534)
T 1zpu_A 35 DITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCP----I---APGSTMLYNFTVDYNVGTYWYHSH 107 (534)
T ss_dssp CEEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTBCC----B---CTTCEEEEEEECSSCCEEEEEECC
T ss_pred cEEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCccccCC----c---CCCCeEEEEEEeCccceeEEEEEc
Confidence 357899999999997543 22221 110 1111 122 1 23432 57777 8999999999
Q ss_pred CCCCCCCCCeEEEEEecC
Q 025390 155 NKDNCVNNEKLAVIVLAD 172 (253)
Q Consensus 155 v~gHC~~GmKlaI~V~a~ 172 (253)
...|=..|+.-.+.|...
T Consensus 108 ~~~q~~~Gl~G~liV~~~ 125 (534)
T 1zpu_A 108 TDGQYEDGMKGLFIIKDD 125 (534)
T ss_dssp SSSGGGGTCEEEEEEECT
T ss_pred CcccccCcceeeEEeCCC
Confidence 988888899999988764
No 82
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=26.95 E-value=17 Score=22.34 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=12.6
Q ss_pred ccccceeeccccCCC
Q 025390 7 PLRLQCFRFLTPLPS 21 (253)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (253)
.-|..||||=+|+|.
T Consensus 17 a~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 17 RKRLKCFRCGADKFD 31 (32)
T ss_dssp TTCCBCTTTCCBTTC
T ss_pred hhcceecCCCCcCCC
Confidence 458899999999974
No 83
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=26.83 E-value=76 Score=30.15 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=46.1
Q ss_pred CceeeCCEEEEEecCCC--------ceEEE--E--Cc-ccCCCCC-CC-CCcccccCCce---EEEE-eccccEEEEeCC
Q 025390 95 NRFQIGDSIVFKYASGQ--------DSVLQ--V--NK-DAYTNCS-TE-YPVARYTDGHT---VFTF-KQSGPYYFISGN 155 (253)
Q Consensus 95 ~tF~VGDsLvF~Y~~g~--------hsVv~--V--~k-~~YdsC~-~s-~pi~~~s~G~t---~v~L-~~~G~~YFICgv 155 (253)
.+++.||+|+.++.+.- .+|.. + .. ...|.=. .+ .+ ...|.+ .|++ +++|+|||=|-.
T Consensus 37 I~~~~GD~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vtq~p---I~PG~sftY~f~~~~~~GT~wYHsH~ 113 (495)
T 3t6v_A 37 IAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCP---IIVGNSFSYNFNVPGMAGTYWYHSHL 113 (495)
T ss_dssp EEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTTBCC---BCTTCEEEEEEECTTCCEEEEEEECS
T ss_pred EEEECCcEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccccCC---CCCCCeEEEEEEeCCCCceeeeeccc
Confidence 57899999999986532 23422 1 10 1111100 00 01 123432 5666 679999999998
Q ss_pred CCCCCCCCeEEEEEecC
Q 025390 156 KDNCVNNEKLAVIVLAD 172 (253)
Q Consensus 156 ~gHC~~GmKlaI~V~a~ 172 (253)
..|=..|+.-.+.|...
T Consensus 114 ~~q~~~GL~G~lIV~~~ 130 (495)
T 3t6v_A 114 TTQYCDGLRGPFVVYDP 130 (495)
T ss_dssp TTGGGGTCEEEEEEECT
T ss_pred hhHHhcCceEEEEEcCc
Confidence 88878899999999654
No 84
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=26.39 E-value=42 Score=30.80 Aligned_cols=35 Identities=9% Similarity=0.108 Sum_probs=28.9
Q ss_pred EEEEeccccEEEEeCCCCCC-CCCCeEEEEEecCCC
Q 025390 140 VFTFKQSGPYYFISGNKDNC-VNNEKLAVIVLADRS 174 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC-~~GmKlaI~V~a~~s 174 (253)
.|+.+++|.|+|.|....|+ ..||...+.|.....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCCC
Confidence 57778899999999998887 789988888876543
No 85
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=26.03 E-value=83 Score=29.98 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=46.0
Q ss_pred CceeeCCEEEEEecCCC--------ceEEE--E--Cc-ccCC------CCCCCCCcccccCCce---EEEE-eccccEEE
Q 025390 95 NRFQIGDSIVFKYASGQ--------DSVLQ--V--NK-DAYT------NCSTEYPVARYTDGHT---VFTF-KQSGPYYF 151 (253)
Q Consensus 95 ~tF~VGDsLvF~Y~~g~--------hsVv~--V--~k-~~Yd------sC~~s~pi~~~s~G~t---~v~L-~~~G~~YF 151 (253)
.+++.||+|+.++.+.- ++|.. + .. ...| .|- ...|.+ .|++ +++|+|||
T Consensus 36 I~~~~GD~v~V~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vtq~p-------I~PG~s~tY~f~~~~~~GT~wY 108 (499)
T 3pxl_A 36 VAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFINQCP-------ISPGHSFLYDFQVPDQAGTFWY 108 (499)
T ss_dssp EEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTTBCC-------BCTTCEEEEEEECSSCCEEEEE
T ss_pred EEEeCCCEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccccCC-------CCCCCeEEEEEEcCCCCceeee
Confidence 57899999999986532 34432 1 10 1111 121 123433 5666 67999999
Q ss_pred EeCCCCCCCCCCeEEEEEecC
Q 025390 152 ISGNKDNCVNNEKLAVIVLAD 172 (253)
Q Consensus 152 ICgv~gHC~~GmKlaI~V~a~ 172 (253)
=|-...|=..|+.-.+.|...
T Consensus 109 HsH~~~q~~~GL~G~lIV~~~ 129 (499)
T 3pxl_A 109 HSHLSTQYCDGLRGPFVVYDP 129 (499)
T ss_dssp EECSTTGGGGTCEEEEEEECT
T ss_pred eccchhHHhccceeEEEEcCC
Confidence 999887877899999999654
No 86
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=25.96 E-value=19 Score=28.39 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=10.2
Q ss_pred CceeeCCEEEEE
Q 025390 95 NRFQIGDSIVFK 106 (253)
Q Consensus 95 ~tF~VGDsLvF~ 106 (253)
+.+++||.|+|+
T Consensus 33 ~~i~vGD~I~f~ 44 (113)
T 1xne_A 33 KDIKRGDKIIFN 44 (113)
T ss_dssp TTCCTTCEEEET
T ss_pred hccCCCCEEEEc
Confidence 468999999994
No 87
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=25.83 E-value=95 Score=30.36 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=27.9
Q ss_pred EEEEeccccEEEEeCCCCCCCCCCeEEEEEecC
Q 025390 140 VFTFKQSGPYYFISGNKDNCVNNEKLAVIVLAD 172 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC~~GmKlaI~V~a~ 172 (253)
.|+++++|+|||=|-...|=..|+.-.|.|..+
T Consensus 156 ~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p 188 (580)
T 3sqr_A 156 KFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGP 188 (580)
T ss_dssp EEECCCCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred EEECCCCcceEEeecccccccCcCEEEEEeeCc
Confidence 677889999999999887877899888888654
No 88
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=25.62 E-value=32 Score=25.12 Aligned_cols=17 Identities=18% Similarity=0.561 Sum_probs=14.2
Q ss_pred cCceeeCCEEEEEecCC
Q 025390 94 KNRFQIGDSIVFKYASG 110 (253)
Q Consensus 94 ~~tF~VGDsLvF~Y~~g 110 (253)
-..+++||.+.|.|...
T Consensus 51 l~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp ECCCCTTCEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEe
Confidence 46799999999999753
No 89
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=25.42 E-value=32 Score=25.61 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=16.2
Q ss_pred hhhccCceeeCCEEEEEecCC
Q 025390 90 QWAEKNRFQIGDSIVFKYASG 110 (253)
Q Consensus 90 ~WAs~~tF~VGDsLvF~Y~~g 110 (253)
+.+.-..+++||.|.|.|...
T Consensus 55 ~~~~l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 55 PQTKMSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp TTCEECCCCTTCEEEEEEEEE
T ss_pred ChhhhhcCCCCCEEEEEEEEe
Confidence 344456799999999999753
No 90
>1w0n_A Endo-1,4-beta-xylanase D; hydrolase, carbohydrate-binding module, carbohydrate binding, CBM36; 0.8A {Paenibacillus polymyxa} SCOP: b.18.1.28 PDB: 1ux7_A
Probab=22.92 E-value=1.7e+02 Score=23.75 Aligned_cols=64 Identities=11% Similarity=0.305 Sum_probs=39.4
Q ss_pred eeCCEEEEE--ecCCCceEEEECcccCCCCCCCCCcccccCCceEEEEe----ccccEEEEeCCC--------CCCCCCC
Q 025390 98 QIGDSIVFK--YASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFK----QSGPYYFISGNK--------DNCVNNE 163 (253)
Q Consensus 98 ~VGDsLvF~--Y~~g~hsVv~V~k~~YdsC~~s~pi~~~s~G~t~v~L~----~~G~~YFICgv~--------gHC~~Gm 163 (253)
.-||.++|+ |.++.|++-. +.|.-.+ ...+|.|. +.|++||--..+ .|-..-|
T Consensus 41 an~D~~~~~~nFa~~~~sfsl------RgasnNs-------n~A~VdLrigg~~~GTfy~~gt~P~v~t~nnv~~~tg~q 107 (131)
T 1w0n_A 41 ANADYVSYSQYFANSTHNISV------RGASSNA-------GTAKVDLVIGGVTVGSFNFTGKTPTVQTLSNITHATGDQ 107 (131)
T ss_dssp STTCEEEEEEEESSSEEEEEE------EEEESSS-------SEEEEEEEETTEEEEEEEEESSSCEEEEEEEEECCCEEE
T ss_pred ecCCEEEEEEEeccccceEEE------EeccCCC-------CceEEEEEeCCeeeEEEEeccccceeeeeccccccCCce
Confidence 458999887 4466676632 1244322 22345543 468899877665 2444459
Q ss_pred eEEEEEecCCC
Q 025390 164 KLAVIVLADRS 174 (253)
Q Consensus 164 KlaI~V~a~~s 174 (253)
++.+.|.++..
T Consensus 108 ~vel~vT~dnG 118 (131)
T 1w0n_A 108 EIKLALTSDDG 118 (131)
T ss_dssp EEEEEESCSSS
T ss_pred EEEEEEECCCC
Confidence 99999987754
No 91
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=22.38 E-value=39 Score=24.84 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=16.1
Q ss_pred hhccCceeeCCEEEEEecCCC
Q 025390 91 WAEKNRFQIGDSIVFKYASGQ 111 (253)
Q Consensus 91 WAs~~tF~VGDsLvF~Y~~g~ 111 (253)
.+.-..+++||.|.|.+....
T Consensus 42 ~~~l~~lk~Gd~V~F~~~~~~ 62 (82)
T 2l55_A 42 AGLPQGLKAGDRVAFSFRLDP 62 (82)
T ss_dssp TCCCSSCSTTCEEEEEEEEET
T ss_pred hhHhhcCCCCCEEEEEEEECC
Confidence 344567999999999997543
No 92
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=21.87 E-value=40 Score=32.80 Aligned_cols=32 Identities=3% Similarity=0.027 Sum_probs=28.3
Q ss_pred EEEEeccccEEEEeCCCCCCCCCCeEEEEEec
Q 025390 140 VFTFKQSGPYYFISGNKDNCVNNEKLAVIVLA 171 (253)
Q Consensus 140 ~v~L~~~G~~YFICgv~gHC~~GmKlaI~V~a 171 (253)
.|+.+.+|.++|-|-+..|-..||...+.|..
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred EEEeccceEeecccCcccccccccccceeeec
Confidence 45667899999999999999999999999964
No 93
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=20.19 E-value=53 Score=25.68 Aligned_cols=20 Identities=15% Similarity=0.519 Sum_probs=16.1
Q ss_pred hhhccCceeeCCEEEEEecC
Q 025390 90 QWAEKNRFQIGDSIVFKYAS 109 (253)
Q Consensus 90 ~WAs~~tF~VGDsLvF~Y~~ 109 (253)
..+..+..++||.++|....
T Consensus 85 ~FV~~~~L~~GD~~~F~~~~ 104 (130)
T 1wid_A 85 RFVKEKNLRAGDVVSFSRSN 104 (130)
T ss_dssp HHHHHTTCCTTCEEEEEECC
T ss_pred HHHHHcCCCCCCEEEEEEec
Confidence 34566889999999999875
Done!