Query 025391
Match_columns 253
No_of_seqs 225 out of 2331
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 3.6E-31 7.8E-36 214.2 16.3 177 20-200 1-204 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 9.2E-28 2E-32 192.3 18.1 154 20-188 1-154 (196)
3 TIGR00991 3a0901s02IAP34 GTP-b 99.9 2E-22 4.3E-27 168.5 17.5 159 13-176 32-191 (313)
4 TIGR00993 3a0901s04IAP86 chlor 99.9 3.3E-21 7.1E-26 173.2 17.3 162 18-183 117-286 (763)
5 cd01853 Toc34_like Toc34-like 99.8 1.6E-19 3.5E-24 148.9 16.7 136 15-153 27-165 (249)
6 COG1159 Era GTPase [General fu 99.8 1.6E-18 3.5E-23 142.3 14.7 123 20-152 7-129 (298)
7 COG1160 Predicted GTPases [Gen 99.8 1.5E-17 3.3E-22 143.8 15.7 155 20-184 4-158 (444)
8 PF01926 MMR_HSR1: 50S ribosom 99.8 4.5E-17 9.7E-22 119.3 14.1 116 21-146 1-116 (116)
9 TIGR00436 era GTP-binding prot 99.7 1.7E-16 3.7E-21 133.1 15.8 120 21-151 2-121 (270)
10 PRK00089 era GTPase Era; Revie 99.7 3.2E-16 6.9E-21 133.0 16.4 123 19-151 5-127 (292)
11 PF02421 FeoB_N: Ferrous iron 99.7 8.1E-17 1.8E-21 122.9 10.7 119 20-151 1-119 (156)
12 cd04163 Era Era subfamily. Er 99.7 4.9E-16 1.1E-20 119.9 15.1 123 19-151 3-125 (168)
13 cd01897 NOG NOG1 is a nucleola 99.7 4.3E-16 9.3E-21 121.2 14.8 124 20-151 1-127 (168)
14 PRK15494 era GTPase Era; Provi 99.7 5.3E-16 1.1E-20 134.0 16.1 134 19-162 52-185 (339)
15 cd04119 RJL RJL (RabJ-Like) su 99.7 3.7E-16 7.9E-21 121.2 13.8 119 20-150 1-123 (168)
16 TIGR03598 GTPase_YsxC ribosome 99.7 1.7E-15 3.7E-20 119.4 17.2 125 17-151 16-143 (179)
17 KOG0084 GTPase Rab1/YPT1, smal 99.7 4.6E-16 1E-20 119.9 12.8 151 18-182 8-163 (205)
18 cd01878 HflX HflX subfamily. 99.7 1E-15 2.2E-20 123.2 15.4 128 17-151 39-167 (204)
19 cd04124 RabL2 RabL2 subfamily. 99.7 4.9E-16 1.1E-20 120.4 12.8 115 20-150 1-117 (161)
20 cd01866 Rab2 Rab2 subfamily. 99.7 1.2E-15 2.5E-20 119.1 14.4 119 19-151 4-123 (168)
21 cd01894 EngA1 EngA1 subfamily. 99.7 8.4E-16 1.8E-20 117.8 13.3 119 23-151 1-119 (157)
22 COG1084 Predicted GTPase [Gene 99.7 1.2E-15 2.6E-20 126.7 14.6 130 12-151 161-294 (346)
23 cd01898 Obg Obg subfamily. Th 99.7 1.5E-15 3.3E-20 118.2 13.9 124 21-151 2-128 (170)
24 cd04164 trmE TrmE (MnmE, ThdF, 99.7 2.3E-15 5E-20 115.3 14.6 120 20-151 2-121 (157)
25 cd01850 CDC_Septin CDC/Septin. 99.7 6.1E-15 1.3E-19 123.8 18.3 126 19-151 4-157 (276)
26 PRK00093 GTP-binding protein D 99.7 2.1E-15 4.5E-20 134.9 16.5 132 20-162 2-133 (435)
27 COG0218 Predicted GTPase [Gene 99.7 4.7E-15 1E-19 115.8 15.9 125 17-151 22-149 (200)
28 cd01867 Rab8_Rab10_Rab13_like 99.7 2.3E-15 4.9E-20 117.2 14.3 118 19-151 3-122 (167)
29 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.7E-15 3.7E-20 121.7 13.9 150 20-184 1-161 (201)
30 PF00735 Septin: Septin; Inte 99.7 2.3E-15 4.9E-20 126.4 14.7 135 19-163 4-166 (281)
31 PRK03003 GTP-binding protein D 99.7 3.8E-15 8.3E-20 134.2 17.1 125 17-151 36-160 (472)
32 cd04122 Rab14 Rab14 subfamily. 99.7 2.7E-15 5.9E-20 116.6 14.1 116 20-151 3-121 (166)
33 cd04171 SelB SelB subfamily. 99.7 5E-15 1.1E-19 114.4 15.2 116 21-151 2-118 (164)
34 cd01895 EngA2 EngA2 subfamily. 99.7 5.5E-15 1.2E-19 114.9 15.6 125 19-151 2-127 (174)
35 TIGR03594 GTPase_EngA ribosome 99.7 3.5E-15 7.7E-20 133.2 16.3 121 21-151 1-121 (429)
36 cd04113 Rab4 Rab4 subfamily. 99.7 2.6E-15 5.5E-20 116.0 13.3 118 20-151 1-119 (161)
37 cd01865 Rab3 Rab3 subfamily. 99.7 3.3E-15 7.1E-20 116.1 13.9 117 20-151 2-120 (165)
38 TIGR03156 GTP_HflX GTP-binding 99.7 4.9E-15 1.1E-19 128.2 16.3 126 19-151 189-315 (351)
39 cd04109 Rab28 Rab28 subfamily. 99.7 2.9E-15 6.4E-20 121.6 14.0 119 20-151 1-123 (215)
40 cd01861 Rab6 Rab6 subfamily. 99.7 3.5E-15 7.5E-20 115.2 13.7 116 20-151 1-119 (161)
41 cd01864 Rab19 Rab19 subfamily. 99.7 4.3E-15 9.4E-20 115.3 14.3 117 19-151 3-122 (165)
42 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 4.3E-15 9.3E-20 115.4 13.7 117 20-151 3-121 (166)
43 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 6.9E-15 1.5E-19 114.2 14.8 114 20-151 1-116 (168)
44 cd01860 Rab5_related Rab5-rela 99.6 5.3E-15 1.1E-19 114.4 13.9 118 20-151 2-120 (163)
45 cd01868 Rab11_like Rab11-like. 99.6 5.4E-15 1.2E-19 114.7 14.0 117 19-151 3-122 (165)
46 cd04140 ARHI_like ARHI subfami 99.6 4.3E-15 9.2E-20 115.5 13.4 119 20-151 2-122 (165)
47 cd01863 Rab18 Rab18 subfamily. 99.6 6.2E-15 1.3E-19 113.8 14.2 118 20-150 1-119 (161)
48 cd04127 Rab27A Rab27a subfamil 99.6 6.4E-15 1.4E-19 116.0 14.4 121 19-151 4-134 (180)
49 PRK12299 obgE GTPase CgtA; Rev 99.6 7.7E-15 1.7E-19 126.1 16.1 126 20-151 159-285 (335)
50 cd04110 Rab35 Rab35 subfamily. 99.6 5.2E-15 1.1E-19 118.7 14.0 118 18-151 5-124 (199)
51 cd04145 M_R_Ras_like M-Ras/R-R 99.6 5.8E-15 1.3E-19 114.2 13.8 117 19-151 2-121 (164)
52 cd04121 Rab40 Rab40 subfamily. 99.6 7E-15 1.5E-19 116.9 14.4 150 18-184 5-160 (189)
53 cd04120 Rab12 Rab12 subfamily. 99.6 5.7E-15 1.2E-19 118.5 13.9 149 20-184 1-156 (202)
54 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 1.8E-14 4E-19 114.0 16.6 120 19-151 3-123 (183)
55 cd00154 Rab Rab family. Rab G 99.6 6.1E-15 1.3E-19 112.8 13.2 117 20-150 1-118 (159)
56 smart00175 RAB Rab subfamily o 99.6 7.1E-15 1.5E-19 113.6 13.6 116 20-151 1-119 (164)
57 cd04112 Rab26 Rab26 subfamily. 99.6 9.2E-15 2E-19 116.5 14.4 118 20-151 1-120 (191)
58 cd04142 RRP22 RRP22 subfamily. 99.6 1E-14 2.2E-19 116.8 14.7 126 20-151 1-130 (198)
59 cd04101 RabL4 RabL4 (Rab-like4 99.6 8.1E-15 1.8E-19 113.5 13.7 118 20-151 1-121 (164)
60 PRK00454 engB GTP-binding prot 99.6 3.9E-14 8.4E-19 113.0 17.6 125 17-151 22-149 (196)
61 cd04154 Arl2 Arl2 subfamily. 99.6 1.5E-14 3.3E-19 113.3 14.7 126 17-161 12-140 (173)
62 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1.4E-14 3E-19 114.5 14.5 116 17-150 3-122 (182)
63 cd04144 Ras2 Ras2 subfamily. 99.6 6E-15 1.3E-19 117.4 12.5 116 21-151 1-120 (190)
64 PRK12298 obgE GTPase CgtA; Rev 99.6 1.3E-14 2.9E-19 127.0 15.7 125 21-151 161-289 (390)
65 cd04106 Rab23_lke Rab23-like s 99.6 9.3E-15 2E-19 112.9 13.2 116 20-151 1-120 (162)
66 cd04125 RabA_like RabA-like su 99.6 1.3E-14 2.7E-19 115.3 14.0 117 20-151 1-119 (188)
67 cd00877 Ran Ran (Ras-related n 99.6 6.9E-15 1.5E-19 114.6 12.0 147 20-184 1-152 (166)
68 PLN03071 GTP-binding nuclear p 99.6 9.8E-15 2.1E-19 118.8 13.1 151 17-184 11-165 (219)
69 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 2.4E-14 5.2E-19 112.2 14.8 117 19-151 2-121 (172)
70 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.6E-14 3.6E-19 112.8 13.8 119 19-151 2-123 (170)
71 cd04160 Arfrp1 Arfrp1 subfamil 99.6 1.6E-14 3.4E-19 112.2 13.6 117 21-151 1-121 (167)
72 cd04123 Rab21 Rab21 subfamily. 99.6 1.8E-14 3.9E-19 111.0 13.8 117 20-151 1-119 (162)
73 cd04131 Rnd Rnd subfamily. Th 99.6 1.9E-14 4.2E-19 113.4 14.1 114 20-151 2-119 (178)
74 PRK00093 GTP-binding protein D 99.6 3.4E-14 7.3E-19 127.1 17.4 127 18-151 172-298 (435)
75 cd04104 p47_IIGP_like p47 (47- 99.6 1.1E-14 2.4E-19 116.6 12.9 117 20-151 2-121 (197)
76 PLN03118 Rab family protein; P 99.6 2E-14 4.3E-19 116.3 14.4 123 14-151 9-134 (211)
77 COG5019 CDC3 Septin family pro 99.6 3.3E-14 7.1E-19 119.9 16.0 136 17-161 21-184 (373)
78 PLN03110 Rab GTPase; Provision 99.6 2.3E-14 5E-19 116.4 14.8 119 18-151 11-131 (216)
79 cd00881 GTP_translation_factor 99.6 2.2E-14 4.9E-19 113.3 14.3 114 21-151 1-128 (189)
80 cd04132 Rho4_like Rho4-like su 99.6 2E-14 4.4E-19 113.9 13.9 114 20-151 1-119 (187)
81 cd04138 H_N_K_Ras_like H-Ras/N 99.6 2.1E-14 4.6E-19 110.6 13.6 116 20-151 2-120 (162)
82 smart00173 RAS Ras subfamily o 99.6 1.4E-14 3.1E-19 112.2 12.6 116 20-151 1-119 (164)
83 cd04117 Rab15 Rab15 subfamily. 99.6 2.6E-14 5.6E-19 110.7 14.0 116 20-151 1-119 (161)
84 cd01884 EF_Tu EF-Tu subfamily. 99.6 1.7E-14 3.7E-19 115.1 13.2 117 19-151 2-132 (195)
85 COG3596 Predicted GTPase [Gene 99.6 8.9E-15 1.9E-19 118.9 11.4 126 17-151 37-162 (296)
86 cd04111 Rab39 Rab39 subfamily. 99.6 2.6E-14 5.6E-19 115.7 14.2 119 19-151 2-123 (211)
87 cd01881 Obg_like The Obg-like 99.6 1.5E-14 3.2E-19 113.1 12.4 121 24-151 1-134 (176)
88 TIGR03594 GTPase_EngA ribosome 99.6 4.8E-14 1E-18 125.9 17.3 126 18-150 171-296 (429)
89 cd01862 Rab7 Rab7 subfamily. 99.6 2.4E-14 5.2E-19 111.6 13.5 119 20-151 1-123 (172)
90 KOG0098 GTPase Rab2, small G p 99.6 6.5E-14 1.4E-18 107.1 15.2 154 18-185 5-162 (216)
91 PRK12297 obgE GTPase CgtA; Rev 99.6 3.4E-14 7.4E-19 125.2 15.7 124 21-150 160-287 (424)
92 PTZ00369 Ras-like protein; Pro 99.6 4.2E-14 9E-19 112.5 14.8 120 18-151 4-124 (189)
93 cd04149 Arf6 Arf6 subfamily. 99.6 3.9E-14 8.4E-19 110.6 14.3 126 18-162 8-136 (168)
94 COG1160 Predicted GTPases [Gen 99.6 8.9E-15 1.9E-19 126.7 11.5 137 18-162 177-314 (444)
95 cd04157 Arl6 Arl6 subfamily. 99.6 3.9E-14 8.5E-19 109.3 13.9 116 21-151 1-118 (162)
96 cd04166 CysN_ATPS CysN_ATPS su 99.6 3E-14 6.5E-19 115.1 13.5 115 21-151 1-144 (208)
97 KOG2655 Septin family protein 99.6 3.1E-14 6.8E-19 120.9 14.1 136 18-162 20-181 (366)
98 PLN03108 Rab family protein; P 99.6 4.3E-14 9.3E-19 114.3 14.4 119 19-151 6-125 (210)
99 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 5.6E-14 1.2E-18 114.9 15.0 114 19-150 13-130 (232)
100 cd04175 Rap1 Rap1 subgroup. T 99.6 2.6E-14 5.7E-19 110.8 12.5 115 20-151 2-120 (164)
101 TIGR02729 Obg_CgtA Obg family 99.6 6.2E-14 1.3E-18 120.4 15.9 126 20-151 158-287 (329)
102 cd04118 Rab24 Rab24 subfamily. 99.6 2.9E-14 6.3E-19 113.6 12.9 114 20-151 1-119 (193)
103 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 3.4E-14 7.3E-19 111.1 13.0 115 21-151 2-120 (170)
104 cd01891 TypA_BipA TypA (tyrosi 99.6 6.2E-14 1.3E-18 112.0 14.8 115 20-151 3-131 (194)
105 cd04114 Rab30 Rab30 subfamily. 99.6 5.1E-14 1.1E-18 109.6 14.0 117 19-151 7-126 (169)
106 cd04161 Arl2l1_Arl13_like Arl2 99.6 6.4E-14 1.4E-18 109.2 14.5 113 21-151 1-114 (167)
107 cd04136 Rap_like Rap-like subf 99.6 2.9E-14 6.3E-19 110.2 12.3 116 20-151 2-120 (163)
108 KOG0080 GTPase Rab18, small G 99.6 1.6E-14 3.4E-19 107.7 10.0 121 17-150 9-130 (209)
109 PF00009 GTP_EFTU: Elongation 99.6 1.6E-14 3.4E-19 114.8 10.8 116 19-150 3-135 (188)
110 KOG1547 Septin CDC10 and relat 99.6 5E-14 1.1E-18 112.0 13.4 127 18-151 45-198 (336)
111 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 4.3E-14 9.4E-19 109.8 13.0 112 22-151 2-113 (164)
112 PRK11058 GTPase HflX; Provisio 99.6 5.8E-14 1.2E-18 124.4 15.3 125 20-151 198-323 (426)
113 KOG0095 GTPase Rab30, small G 99.6 7.4E-14 1.6E-18 102.9 13.1 151 20-184 8-162 (213)
114 PRK04213 GTP-binding protein; 99.6 1.2E-13 2.7E-18 110.7 15.7 123 17-151 7-144 (201)
115 cd04128 Spg1 Spg1p. Spg1p (se 99.6 5.1E-14 1.1E-18 111.4 13.2 115 20-151 1-118 (182)
116 TIGR00450 mnmE_trmE_thdF tRNA 99.6 6.3E-14 1.4E-18 124.8 15.2 123 18-151 202-324 (442)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.6 5.3E-14 1.1E-18 108.5 13.0 113 21-151 1-115 (160)
118 cd00879 Sar1 Sar1 subfamily. 99.6 9.2E-14 2E-18 110.4 14.7 127 17-162 17-146 (190)
119 cd04116 Rab9 Rab9 subfamily. 99.6 6E-14 1.3E-18 109.4 13.4 154 18-184 4-164 (170)
120 PRK03003 GTP-binding protein D 99.6 3.2E-13 7E-18 121.8 19.7 126 18-151 210-336 (472)
121 cd04102 RabL3 RabL3 (Rab-like3 99.6 7.8E-14 1.7E-18 111.8 14.0 121 20-151 1-143 (202)
122 KOG0092 GTPase Rab5/YPT51 and 99.6 2E-14 4.3E-19 110.6 9.8 153 18-184 4-160 (200)
123 cd04155 Arl3 Arl3 subfamily. 99.6 1.5E-13 3.2E-18 107.4 15.0 117 17-151 12-129 (173)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.6 9.1E-14 2E-18 107.0 13.6 113 21-151 1-114 (158)
125 PRK09518 bifunctional cytidyla 99.6 1.1E-13 2.5E-18 130.3 16.7 124 18-151 274-397 (712)
126 cd00157 Rho Rho (Ras homology) 99.6 6.4E-14 1.4E-18 109.1 12.5 116 20-151 1-118 (171)
127 smart00174 RHO Rho (Ras homolo 99.6 5.6E-14 1.2E-18 109.9 12.2 112 22-151 1-116 (174)
128 cd04158 ARD1 ARD1 subfamily. 99.6 1.1E-13 2.3E-18 108.1 13.7 112 21-151 1-114 (169)
129 cd04159 Arl10_like Arl10-like 99.6 1.2E-13 2.5E-18 105.8 13.7 112 22-151 2-115 (159)
130 cd01876 YihA_EngB The YihA (En 99.6 2.6E-13 5.5E-18 104.9 15.7 120 22-151 2-124 (170)
131 cd01890 LepA LepA subfamily. 99.6 6.1E-14 1.3E-18 110.2 12.4 116 20-151 1-133 (179)
132 smart00177 ARF ARF-like small 99.6 1.8E-13 3.8E-18 107.6 14.9 114 19-151 13-128 (175)
133 PF08477 Miro: Miro-like prote 99.6 8.5E-15 1.8E-19 107.5 6.9 116 21-148 1-119 (119)
134 COG0486 ThdF Predicted GTPase 99.6 5.2E-14 1.1E-18 122.3 12.8 124 17-151 215-338 (454)
135 cd04146 RERG_RasL11_like RERG/ 99.6 3.2E-14 6.9E-19 110.5 10.5 117 21-151 1-120 (165)
136 smart00178 SAR Sar1p-like memb 99.6 1.8E-13 4E-18 108.3 15.0 127 17-162 15-144 (184)
137 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 2.2E-13 4.7E-18 106.9 15.2 114 19-151 15-130 (174)
138 cd01875 RhoG RhoG subfamily. 99.6 1.3E-13 2.7E-18 109.9 14.0 114 20-151 4-121 (191)
139 PRK05291 trmE tRNA modificatio 99.6 6.1E-14 1.3E-18 125.4 13.6 122 18-151 214-335 (449)
140 cd01893 Miro1 Miro1 subfamily. 99.6 8.6E-14 1.9E-18 108.2 12.7 114 21-151 2-117 (166)
141 cd04133 Rop_like Rop subfamily 99.6 7.3E-14 1.6E-18 109.8 12.3 115 20-151 2-119 (176)
142 cd04150 Arf1_5_like Arf1-Arf5- 99.6 1.8E-13 3.8E-18 105.8 14.1 112 21-151 2-115 (159)
143 cd04139 RalA_RalB RalA/RalB su 99.5 1.4E-13 3E-18 106.3 13.5 116 20-151 1-119 (164)
144 cd01888 eIF2_gamma eIF2-gamma 99.5 1.2E-13 2.6E-18 111.1 13.6 117 20-151 1-151 (203)
145 PLN00223 ADP-ribosylation fact 99.5 2.9E-13 6.2E-18 107.0 15.4 116 17-151 15-132 (181)
146 cd04151 Arl1 Arl1 subfamily. 99.5 1.7E-13 3.6E-18 105.7 13.7 112 21-151 1-114 (158)
147 cd01871 Rac1_like Rac1-like su 99.5 2E-13 4.3E-18 107.2 14.2 115 20-151 2-119 (174)
148 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 1.2E-13 2.7E-18 106.4 12.5 121 18-151 21-142 (221)
149 TIGR02528 EutP ethanolamine ut 99.5 3.2E-14 6.9E-19 107.7 9.0 101 21-151 2-102 (142)
150 cd04176 Rap2 Rap2 subgroup. T 99.5 8.8E-14 1.9E-18 107.6 11.6 116 20-151 2-120 (163)
151 cd04148 RGK RGK subfamily. Th 99.5 1.3E-13 2.7E-18 112.4 13.0 117 20-151 1-120 (221)
152 cd01874 Cdc42 Cdc42 subfamily. 99.5 1.6E-13 3.5E-18 107.8 13.1 113 20-151 2-119 (175)
153 PTZ00133 ADP-ribosylation fact 99.5 3.3E-13 7.1E-18 106.7 14.9 115 18-151 16-132 (182)
154 PRK12296 obgE GTPase CgtA; Rev 99.5 2.4E-13 5.3E-18 121.4 15.7 125 20-151 160-298 (500)
155 cd00876 Ras Ras family. The R 99.5 1.8E-13 4E-18 105.1 13.1 115 21-151 1-118 (160)
156 cd01886 EF-G Elongation factor 99.5 2.3E-13 4.9E-18 113.9 14.6 114 21-151 1-130 (270)
157 KOG0078 GTP-binding protein SE 99.5 1.4E-13 3E-18 107.7 12.2 123 15-151 8-131 (207)
158 cd01879 FeoB Ferrous iron tran 99.5 1.5E-13 3.3E-18 105.5 12.5 115 24-151 1-115 (158)
159 KOG0087 GTPase Rab11/YPT3, sma 99.5 4.8E-14 1E-18 110.0 9.2 121 17-151 12-133 (222)
160 cd04126 Rab20 Rab20 subfamily. 99.5 2.1E-13 4.5E-18 110.8 13.0 113 20-151 1-114 (220)
161 cd01889 SelB_euk SelB subfamil 99.5 2.7E-13 5.8E-18 108.1 13.4 116 20-151 1-134 (192)
162 PRK15467 ethanolamine utilizat 99.5 7.4E-14 1.6E-18 107.9 9.8 114 20-161 2-115 (158)
163 TIGR00487 IF-2 translation ini 99.5 3.4E-13 7.3E-18 123.7 15.6 117 17-151 85-201 (587)
164 cd04134 Rho3 Rho3 subfamily. 99.5 1.5E-13 3.2E-18 109.4 11.7 114 20-151 1-118 (189)
165 cd00880 Era_like Era (E. coli 99.5 6.4E-13 1.4E-17 101.3 14.9 118 24-151 1-118 (163)
166 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 3.3E-13 7.1E-18 109.7 13.8 115 20-151 2-119 (222)
167 KOG0079 GTP-binding protein H- 99.5 1.5E-13 3.2E-18 101.2 10.4 150 20-184 9-162 (198)
168 cd04137 RheB Rheb (Ras Homolog 99.5 2.8E-13 6E-18 106.6 12.8 116 20-151 2-120 (180)
169 PRK09518 bifunctional cytidyla 99.5 6E-13 1.3E-17 125.5 16.9 124 19-151 450-575 (712)
170 PLN00023 GTP-binding protein; 99.5 3.9E-13 8.4E-18 113.6 14.0 124 17-151 19-165 (334)
171 cd01896 DRG The developmentall 99.5 7.6E-13 1.6E-17 108.6 15.5 88 21-115 2-89 (233)
172 cd01892 Miro2 Miro2 subfamily. 99.5 4.2E-13 9E-18 104.8 13.2 117 18-151 3-122 (169)
173 cd04169 RF3 RF3 subfamily. Pe 99.5 5E-13 1.1E-17 111.7 14.3 115 20-151 3-137 (267)
174 cd04168 TetM_like Tet(M)-like 99.5 4E-13 8.7E-18 110.4 13.5 114 21-151 1-130 (237)
175 CHL00071 tufA elongation facto 99.5 3.5E-13 7.5E-18 119.4 14.1 119 17-151 10-142 (409)
176 cd04130 Wrch_1 Wrch-1 subfamil 99.5 3E-13 6.4E-18 105.9 11.8 114 20-151 1-118 (173)
177 cd04105 SR_beta Signal recogni 99.5 5E-13 1.1E-17 107.5 13.4 115 20-151 1-123 (203)
178 cd04143 Rhes_like Rhes_like su 99.5 4.8E-13 1E-17 110.7 13.6 150 20-184 1-164 (247)
179 CHL00189 infB translation init 99.5 5.3E-13 1.2E-17 124.4 15.3 117 17-151 242-361 (742)
180 PRK05306 infB translation init 99.5 5.8E-13 1.2E-17 125.1 15.6 117 16-151 287-403 (787)
181 smart00053 DYNc Dynamin, GTPas 99.5 1.7E-12 3.7E-17 106.2 16.3 138 19-162 26-216 (240)
182 PF00350 Dynamin_N: Dynamin fa 99.5 1.2E-13 2.6E-18 107.6 9.1 115 22-147 1-168 (168)
183 cd04147 Ras_dva Ras-dva subfam 99.5 4.6E-13 1E-17 107.2 12.8 115 21-151 1-118 (198)
184 PF00071 Ras: Ras family; Int 99.5 1.9E-13 4.2E-18 105.5 10.1 150 21-184 1-154 (162)
185 cd04177 RSR1 RSR1 subgroup. R 99.5 5E-13 1.1E-17 104.1 11.9 117 20-151 2-120 (168)
186 KOG1423 Ras-like GTPase ERA [C 99.5 5.6E-13 1.2E-17 109.7 11.5 129 17-151 70-199 (379)
187 cd04135 Tc10 TC10 subfamily. 99.5 8.4E-13 1.8E-17 103.2 12.2 113 20-151 1-118 (174)
188 cd01870 RhoA_like RhoA-like su 99.5 6.8E-13 1.5E-17 103.8 11.5 115 20-151 2-119 (175)
189 PRK12735 elongation factor Tu; 99.5 1E-12 2.2E-17 116.0 13.8 119 17-151 10-142 (396)
190 cd04170 EF-G_bact Elongation f 99.5 1.6E-12 3.4E-17 109.1 14.2 114 21-151 1-130 (268)
191 COG2262 HflX GTPases [General 99.5 1.7E-12 3.8E-17 111.1 14.3 129 17-151 190-318 (411)
192 cd01885 EF2 EF2 (for archaea a 99.5 1E-12 2.2E-17 106.8 12.4 115 20-150 1-138 (222)
193 TIGR00231 small_GTP small GTP- 99.5 2E-12 4.3E-17 98.4 13.4 116 20-151 2-122 (161)
194 TIGR00491 aIF-2 translation in 99.5 1.1E-12 2.4E-17 120.1 13.8 116 18-151 3-135 (590)
195 PTZ00132 GTP-binding nuclear p 99.5 1.6E-12 3.5E-17 105.4 13.4 119 17-151 7-127 (215)
196 PRK12317 elongation factor 1-a 99.5 9.2E-13 2E-17 117.5 12.9 118 18-151 5-153 (425)
197 smart00176 RAN Ran (Ras-relate 99.5 9E-13 2E-17 105.6 11.4 108 25-150 1-112 (200)
198 COG0488 Uup ATPase components 99.4 6.8E-13 1.5E-17 119.9 11.7 76 100-198 168-244 (530)
199 PRK10512 selenocysteinyl-tRNA- 99.4 3E-12 6.4E-17 118.3 16.1 116 21-151 2-118 (614)
200 KOG0073 GTP-binding ADP-ribosy 99.4 2E-12 4.4E-17 96.9 11.7 115 18-151 15-131 (185)
201 TIGR00475 selB selenocysteine- 99.4 3.8E-12 8.2E-17 117.2 16.1 115 21-151 2-117 (581)
202 cd00882 Ras_like_GTPase Ras-li 99.4 1.9E-12 4.2E-17 97.4 11.9 116 24-151 1-116 (157)
203 cd01873 RhoBTB RhoBTB subfamil 99.4 2.2E-12 4.8E-17 103.1 12.7 116 20-151 3-134 (195)
204 PRK12736 elongation factor Tu; 99.4 2.4E-12 5.2E-17 113.5 14.1 118 18-151 11-142 (394)
205 cd04167 Snu114p Snu114p subfam 99.4 1.4E-12 2.9E-17 105.8 11.1 115 20-150 1-136 (213)
206 PRK00049 elongation factor Tu; 99.4 4.2E-12 9.2E-17 112.0 15.1 117 18-151 11-142 (396)
207 PF00025 Arf: ADP-ribosylation 99.4 1.8E-12 3.8E-17 101.9 11.2 127 17-162 12-141 (175)
208 TIGR00485 EF-Tu translation el 99.4 2.9E-12 6.4E-17 113.1 13.6 119 17-151 10-142 (394)
209 PRK05124 cysN sulfate adenylyl 99.4 2.6E-12 5.7E-17 115.6 13.3 126 10-151 18-174 (474)
210 KOG1490 GTP-binding protein CR 99.4 3.7E-13 7.9E-18 117.1 7.1 134 11-152 160-296 (620)
211 PRK09866 hypothetical protein; 99.4 5.6E-12 1.2E-16 114.0 14.6 74 69-151 230-303 (741)
212 PLN03127 Elongation factor Tu; 99.4 4.7E-12 1E-16 113.0 14.0 120 16-151 58-191 (447)
213 PRK09554 feoB ferrous iron tra 99.4 4.3E-12 9.3E-17 119.7 14.5 121 20-151 4-126 (772)
214 PRK04004 translation initiatio 99.4 5E-12 1.1E-16 116.2 14.4 116 17-150 4-136 (586)
215 COG1100 GTPase SAR1 and relate 99.4 9.3E-12 2E-16 101.0 14.5 118 20-151 6-125 (219)
216 PLN03126 Elongation factor Tu; 99.4 3.8E-12 8.3E-17 114.2 13.3 119 17-151 79-211 (478)
217 TIGR01394 TypA_BipA GTP-bindin 99.4 7.9E-12 1.7E-16 115.0 15.5 115 20-151 2-130 (594)
218 TIGR00484 EF-G translation elo 99.4 6.1E-12 1.3E-16 118.4 15.0 119 16-151 7-141 (689)
219 cd04129 Rho2 Rho2 subfamily. 99.4 3.1E-12 6.8E-17 101.5 11.2 113 20-150 2-118 (187)
220 cd04165 GTPBP1_like GTPBP1-lik 99.4 1.1E-11 2.4E-16 101.0 14.5 113 21-151 1-152 (224)
221 cd01883 EF1_alpha Eukaryotic e 99.4 3.5E-12 7.6E-17 103.8 11.2 115 21-151 1-151 (219)
222 KOG1489 Predicted GTP-binding 99.4 5.3E-12 1.1E-16 104.5 11.6 126 20-151 197-326 (366)
223 PRK12739 elongation factor G; 99.4 1E-11 2.3E-16 116.8 15.1 118 17-151 6-139 (691)
224 cd04103 Centaurin_gamma Centau 99.4 8.7E-12 1.9E-16 96.3 11.7 109 20-150 1-112 (158)
225 TIGR01393 lepA GTP-binding pro 99.4 1.3E-11 2.9E-16 113.7 14.9 117 19-151 3-136 (595)
226 PRK00007 elongation factor G; 99.4 1.5E-11 3.3E-16 115.7 15.5 119 16-151 7-141 (693)
227 PRK10218 GTP-binding protein; 99.4 1.8E-11 3.9E-16 112.6 15.5 116 19-151 5-134 (607)
228 TIGR02034 CysN sulfate adenyly 99.4 8.5E-12 1.8E-16 110.5 12.9 116 20-151 1-147 (406)
229 PRK05506 bifunctional sulfate 99.4 7.4E-12 1.6E-16 116.8 13.1 121 15-151 20-171 (632)
230 PF10662 PduV-EutP: Ethanolami 99.4 3.4E-12 7.5E-17 95.5 8.7 101 20-150 2-102 (143)
231 TIGR00503 prfC peptide chain r 99.4 1.9E-11 4.1E-16 111.1 15.3 118 17-151 9-146 (527)
232 COG2229 Predicted GTPase [Gene 99.4 3.6E-11 7.7E-16 92.3 14.0 130 19-163 10-148 (187)
233 TIGR00483 EF-1_alpha translati 99.4 1.3E-11 2.8E-16 110.1 13.6 118 18-151 6-155 (426)
234 KOG0093 GTPase Rab3, small G p 99.4 3.1E-11 6.6E-16 89.0 13.0 119 19-151 21-140 (193)
235 PF05049 IIGP: Interferon-indu 99.3 2.5E-12 5.5E-17 110.7 8.2 117 18-149 34-153 (376)
236 COG0536 Obg Predicted GTPase [ 99.3 2.6E-11 5.7E-16 101.5 12.7 124 21-151 161-289 (369)
237 PRK00741 prfC peptide chain re 99.3 3.9E-11 8.6E-16 109.0 14.8 118 17-151 8-145 (526)
238 TIGR03680 eif2g_arch translati 99.3 2.3E-11 4.9E-16 107.8 12.8 119 18-151 3-148 (406)
239 KOG1191 Mitochondrial GTPase [ 99.3 2.2E-11 4.7E-16 106.2 11.9 128 18-151 267-403 (531)
240 KOG0394 Ras-related GTPase [Ge 99.3 8E-12 1.7E-16 95.5 8.0 154 19-184 9-171 (210)
241 PTZ00141 elongation factor 1- 99.3 3.8E-11 8.2E-16 107.3 13.6 117 18-150 6-158 (446)
242 KOG0086 GTPase Rab4, small G p 99.3 3.1E-11 6.8E-16 89.5 10.7 118 20-151 10-128 (214)
243 KOG0091 GTPase Rab39, small G 99.3 4.3E-11 9.4E-16 89.8 11.5 122 19-151 8-130 (213)
244 PRK13351 elongation factor G; 99.3 3E-11 6.4E-16 113.9 13.4 117 18-151 7-139 (687)
245 PF09439 SRPRB: Signal recogni 99.3 6.9E-12 1.5E-16 97.9 7.5 119 19-151 3-126 (181)
246 COG0370 FeoB Fe2+ transport sy 99.3 3.8E-11 8.3E-16 108.9 13.0 119 20-151 4-122 (653)
247 PRK05433 GTP-binding protein L 99.3 4.8E-11 1E-15 110.2 14.0 118 18-151 6-140 (600)
248 cd01882 BMS1 Bms1. Bms1 is an 99.3 9.5E-11 2.1E-15 95.7 13.4 112 16-151 36-147 (225)
249 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 3.6E-11 7.8E-16 97.9 10.8 124 21-151 1-125 (232)
250 KOG1145 Mitochondrial translat 99.3 1.7E-10 3.7E-15 101.8 15.1 121 17-155 151-271 (683)
251 PRK04000 translation initiatio 99.3 8.3E-11 1.8E-15 104.2 13.5 120 17-151 7-153 (411)
252 PTZ00416 elongation factor 2; 99.2 9E-11 2E-15 112.3 12.8 119 16-150 16-157 (836)
253 TIGR00437 feoB ferrous iron tr 99.2 1.1E-10 2.3E-15 107.7 12.8 113 26-151 1-113 (591)
254 PLN00116 translation elongatio 99.2 1.3E-10 2.9E-15 111.3 13.7 119 16-150 16-163 (843)
255 COG1163 DRG Predicted GTPase [ 99.2 5.5E-11 1.2E-15 98.9 9.5 89 19-114 63-151 (365)
256 KOG0088 GTPase Rab21, small G 99.2 3.4E-11 7.4E-16 89.8 7.4 152 19-184 13-168 (218)
257 COG0532 InfB Translation initi 99.2 2.9E-10 6.3E-15 100.5 14.0 120 18-155 4-125 (509)
258 TIGR00490 aEF-2 translation el 99.2 5.5E-11 1.2E-15 112.3 10.2 119 17-151 17-152 (720)
259 KOG3859 Septins (P-loop GTPase 99.2 8E-10 1.7E-14 90.1 14.0 128 17-151 40-190 (406)
260 KOG0074 GTP-binding ADP-ribosy 99.2 2E-10 4.4E-15 84.2 8.9 128 13-160 11-140 (185)
261 PTZ00258 GTP-binding protein; 99.2 3.5E-10 7.6E-15 98.6 11.6 92 17-114 19-126 (390)
262 KOG4252 GTP-binding protein [S 99.2 1E-10 2.3E-15 89.0 7.1 120 17-151 18-138 (246)
263 cd01900 YchF YchF subfamily. 99.2 2.5E-10 5.4E-15 95.3 10.2 87 22-114 1-103 (274)
264 PTZ00327 eukaryotic translatio 99.2 6.2E-10 1.3E-14 99.5 13.3 120 17-151 32-185 (460)
265 COG0480 FusA Translation elong 99.2 4.8E-10 1E-14 104.2 12.9 120 16-152 7-143 (697)
266 KOG0395 Ras-related GTPase [Ge 99.1 3.6E-10 7.9E-15 90.1 10.4 119 19-151 3-122 (196)
267 PRK09601 GTP-binding protein Y 99.1 4.4E-10 9.5E-15 96.9 11.2 89 20-114 3-107 (364)
268 cd01851 GBP Guanylate-binding 99.1 2.9E-09 6.4E-14 86.8 14.8 109 16-129 4-115 (224)
269 PLN00043 elongation factor 1-a 99.1 7.9E-10 1.7E-14 98.9 12.3 117 18-150 6-158 (447)
270 TIGR02836 spore_IV_A stage IV 99.1 1.1E-09 2.3E-14 94.8 12.1 128 16-151 14-194 (492)
271 KOG1532 GTPase XAB1, interacts 99.1 9.4E-10 2E-14 89.6 10.8 28 15-42 15-42 (366)
272 PRK07560 elongation factor EF- 99.1 1.7E-10 3.8E-15 109.2 7.7 119 16-150 17-152 (731)
273 KOG0071 GTP-binding ADP-ribosy 99.1 4.4E-09 9.5E-14 77.1 13.0 128 17-163 15-145 (180)
274 KOG0462 Elongation factor-type 99.1 1.5E-09 3.3E-14 95.9 11.2 126 17-158 58-198 (650)
275 KOG0097 GTPase Rab14, small G 99.1 2.3E-09 5E-14 78.6 10.3 120 19-152 11-131 (215)
276 KOG0393 Ras-related small GTPa 99.1 4.8E-10 1E-14 88.2 7.0 115 19-151 4-123 (198)
277 COG5256 TEF1 Translation elong 99.0 5.1E-09 1.1E-13 90.1 13.3 129 18-162 6-170 (428)
278 PRK12740 elongation factor G; 99.0 3.9E-09 8.5E-14 99.4 13.7 110 25-151 1-126 (668)
279 KOG0081 GTPase Rab27, small G 99.0 4.3E-10 9.3E-15 84.0 5.4 119 20-151 10-138 (219)
280 PRK09602 translation-associate 99.0 3.2E-09 6.9E-14 93.4 11.7 89 20-114 2-113 (396)
281 cd01858 NGP_1 NGP-1. Autoanti 99.0 7.9E-10 1.7E-14 85.2 6.9 57 18-79 101-157 (157)
282 COG0488 Uup ATPase components 99.0 4.9E-10 1.1E-14 101.5 6.4 135 17-162 346-508 (530)
283 COG1217 TypA Predicted membran 99.0 5E-09 1.1E-13 91.1 11.7 117 20-153 6-136 (603)
284 cd01899 Ygr210 Ygr210 subfamil 99.0 5.1E-09 1.1E-13 89.5 11.0 87 22-114 1-110 (318)
285 KOG1707 Predicted Ras related/ 99.0 7.1E-09 1.5E-13 92.3 11.5 123 18-155 8-133 (625)
286 KOG0070 GTP-binding ADP-ribosy 99.0 2.6E-09 5.6E-14 82.1 7.6 118 15-151 13-132 (181)
287 KOG3883 Ras family small GTPas 98.9 1.5E-08 3.2E-13 75.5 10.9 120 17-151 7-132 (198)
288 PF03193 DUF258: Protein of un 98.9 5.3E-10 1.1E-14 85.6 3.1 62 20-85 36-103 (161)
289 KOG0075 GTP-binding ADP-ribosy 98.9 3.6E-09 7.8E-14 78.2 7.1 113 19-151 20-136 (186)
290 cd04178 Nucleostemin_like Nucl 98.9 4E-09 8.7E-14 82.4 6.9 57 18-79 116-172 (172)
291 KOG0448 Mitofusin 1 GTPase, in 98.9 1.9E-08 4.1E-13 91.1 11.5 127 20-162 110-286 (749)
292 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 5E-09 1.1E-13 79.3 6.7 62 14-80 78-139 (141)
293 PRK13768 GTPase; Provisional 98.9 1.4E-08 3.1E-13 84.3 9.4 80 69-151 97-176 (253)
294 KOG0083 GTPase Rab26/Rab37, sm 98.9 9.1E-10 2E-14 80.0 1.9 114 23-151 1-117 (192)
295 KOG0090 Signal recognition par 98.8 2.9E-08 6.2E-13 78.1 10.0 115 20-152 39-160 (238)
296 PF00448 SRP54: SRP54-type pro 98.8 4.7E-09 1E-13 83.7 5.4 120 20-152 2-155 (196)
297 TIGR01425 SRP54_euk signal rec 98.8 7.5E-08 1.6E-12 85.0 13.4 122 18-151 99-253 (429)
298 TIGR03348 VI_IcmF type VI secr 98.8 2.8E-08 6.1E-13 98.5 11.9 131 20-162 112-264 (1169)
299 cd01849 YlqF_related_GTPase Yl 98.8 1.1E-08 2.3E-13 78.8 7.1 57 18-79 99-155 (155)
300 cd01855 YqeH YqeH. YqeH is an 98.8 6.4E-09 1.4E-13 82.7 6.0 57 19-79 127-190 (190)
301 PRK09563 rbgA GTPase YlqF; Rev 98.8 2.4E-08 5.1E-13 84.6 9.6 65 18-87 120-184 (287)
302 KOG1954 Endocytosis/signaling 98.8 4E-08 8.6E-13 83.3 10.5 127 18-151 57-225 (532)
303 PRK14845 translation initiatio 98.8 1.1E-07 2.4E-12 92.0 14.9 117 13-151 459-592 (1049)
304 cd03222 ABC_RNaseL_inhibitor T 98.8 1.2E-07 2.6E-12 74.4 12.3 109 17-149 23-133 (177)
305 COG4917 EutP Ethanolamine util 98.8 6.2E-09 1.3E-13 75.0 4.5 103 20-151 2-104 (148)
306 KOG0467 Translation elongation 98.8 1.9E-08 4E-13 92.0 8.5 121 13-150 3-137 (887)
307 cd03230 ABC_DR_subfamily_A Thi 98.8 8.2E-08 1.8E-12 75.2 11.2 120 18-148 25-155 (173)
308 cd01856 YlqF YlqF. Proteins o 98.8 1.9E-08 4.1E-13 78.7 7.4 59 17-80 113-171 (171)
309 KOG1673 Ras GTPases [General f 98.8 2.3E-08 5.1E-13 74.6 7.4 130 15-158 16-145 (205)
310 PRK12288 GTPase RsgA; Reviewed 98.8 2.5E-08 5.4E-13 86.3 8.7 60 21-84 207-272 (347)
311 KOG1144 Translation initiation 98.8 7E-08 1.5E-12 88.1 11.7 152 18-187 474-646 (1064)
312 TIGR03596 GTPase_YlqF ribosome 98.8 3.7E-08 8E-13 83.0 9.3 64 18-86 117-180 (276)
313 KOG0447 Dynamin-like GTP bindi 98.8 1.3E-07 2.8E-12 83.9 12.6 141 18-162 307-507 (980)
314 cd03229 ABC_Class3 This class 98.8 9.1E-08 2E-12 75.3 10.7 130 18-149 25-162 (178)
315 KOG0062 ATPase component of AB 98.8 3.3E-08 7.1E-13 87.1 8.5 60 100-167 213-272 (582)
316 COG5192 BMS1 GTP-binding prote 98.8 4.2E-08 9.2E-13 87.2 9.1 113 14-151 64-177 (1077)
317 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 1.7E-07 3.7E-12 71.2 11.3 102 18-148 25-127 (144)
318 COG0481 LepA Membrane GTPase L 98.7 5.7E-08 1.2E-12 84.8 9.6 151 18-184 8-179 (603)
319 COG3276 SelB Selenocysteine-sp 98.7 1.5E-07 3.2E-12 81.7 12.0 124 21-162 2-126 (447)
320 KOG0468 U5 snRNP-specific prot 98.7 9.5E-08 2.1E-12 86.4 11.0 121 14-150 123-262 (971)
321 cd03216 ABC_Carb_Monos_I This 98.7 1.1E-07 2.4E-12 73.8 10.0 115 18-149 25-143 (163)
322 PRK12289 GTPase RsgA; Reviewed 98.7 1.9E-08 4E-13 87.1 6.2 60 20-83 173-238 (352)
323 KOG2486 Predicted GTPase [Gene 98.7 6.7E-08 1.5E-12 79.1 8.9 125 17-151 134-262 (320)
324 PRK10416 signal recognition pa 98.7 3.8E-08 8.3E-13 84.2 7.9 125 17-151 112-273 (318)
325 PRK09435 membrane ATPase/prote 98.7 1E-06 2.3E-11 75.6 16.0 26 16-41 53-78 (332)
326 COG2895 CysN GTPases - Sulfate 98.7 2.8E-07 6E-12 77.9 12.1 129 18-162 5-164 (431)
327 cd03223 ABCD_peroxisomal_ALDP 98.7 1.5E-07 3.1E-12 73.3 9.8 120 18-149 26-149 (166)
328 TIGR00157 ribosome small subun 98.7 3E-08 6.5E-13 82.0 6.1 60 20-84 121-186 (245)
329 COG1419 FlhF Flagellar GTP-bin 98.7 5.2E-08 1.1E-12 84.3 7.6 122 18-151 202-352 (407)
330 PRK11147 ABC transporter ATPas 98.7 5.6E-08 1.2E-12 91.1 8.4 44 102-151 173-216 (635)
331 PRK11889 flhF flagellar biosyn 98.7 3.5E-08 7.5E-13 85.6 6.4 121 19-151 241-391 (436)
332 cd01854 YjeQ_engC YjeQ/EngC. 98.7 9.7E-08 2.1E-12 80.8 8.9 60 20-83 162-227 (287)
333 PRK00098 GTPase RsgA; Reviewed 98.7 1E-07 2.3E-12 81.1 9.0 60 19-82 164-229 (298)
334 COG1162 Predicted GTPases [Gen 98.7 4.6E-08 1E-12 81.7 6.5 61 19-83 164-230 (301)
335 KOG0458 Elongation factor 1 al 98.7 2.6E-07 5.7E-12 82.5 11.0 132 15-162 173-340 (603)
336 TIGR00064 ftsY signal recognit 98.6 2.9E-07 6.2E-12 77.2 10.8 126 17-152 70-232 (272)
337 PRK10636 putative ABC transpor 98.6 1.2E-07 2.5E-12 88.9 9.3 44 102-151 166-209 (638)
338 KOG0927 Predicted transporter 98.6 9.1E-08 2E-12 84.9 7.9 60 99-165 235-294 (614)
339 TIGR00092 GTP-binding protein 98.6 1.5E-07 3.3E-12 81.4 9.2 90 20-114 3-108 (368)
340 cd03246 ABCC_Protease_Secretio 98.6 2.1E-07 4.6E-12 72.8 9.3 123 18-148 27-156 (173)
341 COG4108 PrfC Peptide chain rel 98.6 3.6E-07 7.7E-12 79.2 11.1 121 17-154 10-150 (528)
342 COG1126 GlnQ ABC-type polar am 98.6 2E-07 4.3E-12 74.0 8.9 32 18-49 27-58 (240)
343 KOG0410 Predicted GTP binding 98.6 1.4E-07 3E-12 78.8 8.3 126 18-151 177-308 (410)
344 COG0050 TufB GTPases - transla 98.6 2.3E-07 5E-12 76.6 9.5 127 18-162 11-151 (394)
345 cd03213 ABCG_EPDR ABCG transpo 98.6 6.4E-07 1.4E-11 71.5 11.8 123 18-148 34-171 (194)
346 COG3840 ThiQ ABC-type thiamine 98.6 2.6E-07 5.5E-12 71.5 8.9 32 17-48 23-54 (231)
347 KOG0096 GTPase Ran/TC4/GSP1 (n 98.6 2.7E-07 5.8E-12 71.3 8.9 120 17-151 8-128 (216)
348 COG1161 Predicted GTPases [Gen 98.6 8.9E-08 1.9E-12 82.2 6.9 62 18-84 131-192 (322)
349 cd03228 ABCC_MRP_Like The MRP 98.6 2.4E-07 5.2E-12 72.4 8.7 123 18-149 27-156 (171)
350 COG1120 FepC ABC-type cobalami 98.6 5.5E-07 1.2E-11 74.2 11.0 30 19-48 28-57 (258)
351 cd03215 ABC_Carb_Monos_II This 98.6 3.8E-07 8.2E-12 72.0 9.7 31 18-48 25-55 (182)
352 PRK14723 flhF flagellar biosyn 98.6 1.7E-07 3.8E-12 87.7 8.9 123 19-151 185-337 (767)
353 PRK14722 flhF flagellar biosyn 98.6 2.1E-07 4.5E-12 80.9 8.9 134 18-157 136-301 (374)
354 PRK14721 flhF flagellar biosyn 98.6 1E-07 2.2E-12 84.1 7.0 123 18-152 190-341 (420)
355 KOG0077 Vesicle coat complex C 98.6 3.6E-07 7.7E-12 69.1 8.7 114 20-151 21-135 (193)
356 cd01859 MJ1464 MJ1464. This f 98.6 1.5E-07 3.2E-12 72.4 7.0 57 18-79 100-156 (156)
357 TIGR03597 GTPase_YqeH ribosome 98.6 1.4E-07 3E-12 82.4 7.3 120 20-151 155-280 (360)
358 KOG0461 Selenocysteine-specifi 98.6 4.9E-07 1.1E-11 76.2 10.0 117 19-151 7-136 (522)
359 PRK14974 cell division protein 98.6 2.7E-07 5.9E-12 79.3 8.8 72 68-151 222-293 (336)
360 cd03238 ABC_UvrA The excision 98.6 4E-07 8.6E-12 71.4 8.9 24 18-41 20-43 (176)
361 KOG3886 GTP-binding protein [S 98.6 1.4E-07 3E-12 75.3 6.2 123 19-151 4-130 (295)
362 cd03247 ABCC_cytochrome_bd The 98.6 4E-07 8.8E-12 71.6 8.8 121 18-149 27-158 (178)
363 COG1131 CcmA ABC-type multidru 98.6 7.2E-07 1.6E-11 75.7 10.9 30 19-48 31-60 (293)
364 COG1121 ZnuC ABC-type Mn/Zn tr 98.6 7.1E-07 1.5E-11 73.2 10.4 29 20-48 31-59 (254)
365 cd03217 ABC_FeS_Assembly ABC-t 98.6 6.4E-07 1.4E-11 71.8 9.8 25 18-42 25-49 (200)
366 COG0012 Predicted GTPase, prob 98.5 3.7E-07 8E-12 78.1 8.8 89 20-114 3-108 (372)
367 KOG0066 eIF2-interacting prote 98.5 1.1E-06 2.4E-11 76.6 11.5 90 106-217 432-524 (807)
368 cd00267 ABC_ATPase ABC (ATP-bi 98.5 8.3E-07 1.8E-11 68.3 9.9 112 19-148 25-140 (157)
369 KOG1486 GTP-binding protein DR 98.5 3.4E-07 7.3E-12 74.0 7.3 104 20-133 63-167 (364)
370 KOG0076 GTP-binding ADP-ribosy 98.5 2.4E-07 5.3E-12 70.6 6.0 119 19-151 17-140 (197)
371 cd03232 ABC_PDR_domain2 The pl 98.5 1.9E-06 4.2E-11 68.6 11.5 26 18-43 32-57 (192)
372 KOG0066 eIF2-interacting prote 98.5 1.3E-06 2.7E-11 76.2 10.9 116 19-151 613-764 (807)
373 PTZ00099 rab6; Provisional 98.5 1.7E-06 3.7E-11 67.9 10.2 71 68-151 28-99 (176)
374 PRK12724 flagellar biosynthesi 98.5 8.4E-07 1.8E-11 77.9 9.2 123 19-151 223-373 (432)
375 cd03214 ABC_Iron-Siderophores_ 98.5 2.3E-06 4.9E-11 67.4 10.9 30 18-47 24-53 (180)
376 COG4586 ABC-type uncharacteriz 98.5 3.8E-07 8.3E-12 74.7 6.5 33 17-49 48-80 (325)
377 COG1136 SalX ABC-type antimicr 98.5 1.7E-06 3.7E-11 69.9 10.1 44 105-150 161-205 (226)
378 COG4988 CydD ABC-type transpor 98.5 1.2E-06 2.5E-11 78.9 9.9 31 18-48 346-376 (559)
379 COG1122 CbiO ABC-type cobalt t 98.5 3.6E-06 7.7E-11 68.9 11.9 31 18-48 29-59 (235)
380 PRK11147 ABC transporter ATPas 98.4 6.7E-07 1.4E-11 83.9 8.4 41 105-150 459-499 (635)
381 COG1116 TauB ABC-type nitrate/ 98.4 1.9E-06 4E-11 70.1 9.8 29 20-48 30-58 (248)
382 cd03274 ABC_SMC4_euk Eukaryoti 98.4 7.3E-06 1.6E-10 66.3 13.3 41 106-149 151-191 (212)
383 PRK10636 putative ABC transpor 98.4 7.6E-07 1.6E-11 83.5 8.5 31 18-48 337-367 (638)
384 cd03231 ABC_CcmA_heme_exporter 98.4 3.6E-06 7.9E-11 67.5 11.3 31 18-48 25-55 (201)
385 PRK05703 flhF flagellar biosyn 98.4 5.7E-07 1.2E-11 80.0 7.2 122 19-151 221-371 (424)
386 COG1135 AbcC ABC-type metal io 98.4 1.6E-06 3.4E-11 72.4 9.3 31 18-48 31-61 (339)
387 COG1124 DppF ABC-type dipeptid 98.4 2.4E-06 5.2E-11 69.0 10.0 31 18-48 32-62 (252)
388 KOG1491 Predicted GTP-binding 98.4 1.1E-06 2.3E-11 74.1 8.3 90 18-113 19-124 (391)
389 PRK13543 cytochrome c biogenes 98.4 5.4E-06 1.2E-10 67.1 12.3 31 18-48 36-66 (214)
390 COG2884 FtsE Predicted ATPase 98.4 4E-06 8.7E-11 65.3 10.7 29 20-48 29-57 (223)
391 cd03237 ABC_RNaseL_inhibitor_d 98.4 1.3E-06 2.9E-11 72.3 8.7 31 18-48 24-54 (246)
392 PRK12726 flagellar biosynthesi 98.4 3.6E-07 7.8E-12 79.1 5.3 123 18-152 205-357 (407)
393 KOG1424 Predicted GTP-binding 98.4 4.6E-07 1E-11 79.9 5.9 61 19-84 314-374 (562)
394 PRK11819 putative ABC transpor 98.4 8.9E-07 1.9E-11 81.8 8.1 31 18-48 32-62 (556)
395 cd03243 ABC_MutS_homologs The 98.4 3.2E-06 7E-11 67.8 10.4 121 20-150 30-153 (202)
396 cd03218 ABC_YhbG The ABC trans 98.4 3E-06 6.5E-11 69.4 10.4 31 18-48 25-55 (232)
397 PF03029 ATP_bind_1: Conserved 98.4 5.2E-07 1.1E-11 74.2 5.7 76 70-151 92-170 (238)
398 cd03264 ABC_drug_resistance_li 98.4 2.7E-06 5.8E-11 68.7 9.8 28 21-48 27-54 (211)
399 cd03293 ABC_NrtD_SsuB_transpor 98.4 8E-06 1.7E-10 66.4 12.5 31 18-48 29-59 (220)
400 COG1134 TagH ABC-type polysacc 98.4 3.7E-06 8E-11 68.1 10.2 43 6-48 37-82 (249)
401 TIGR00750 lao LAO/AO transport 98.4 4.9E-06 1.1E-10 71.0 11.5 25 17-41 32-56 (300)
402 PRK13796 GTPase YqeH; Provisio 98.4 4.7E-07 1E-11 79.2 5.4 58 19-81 160-222 (365)
403 PLN03073 ABC transporter F fam 98.4 8.8E-07 1.9E-11 83.8 7.5 44 102-151 361-404 (718)
404 COG0552 FtsY Signal recognitio 98.4 1.8E-06 3.9E-11 72.9 8.5 127 17-150 137-297 (340)
405 COG4559 ABC-type hemin transpo 98.4 1.3E-06 2.9E-11 69.2 7.0 30 19-48 27-56 (259)
406 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 1.3E-06 2.8E-11 80.7 8.2 31 18-48 30-60 (552)
407 cd03280 ABC_MutS2 MutS2 homolo 98.4 1.4E-05 3E-10 64.0 13.1 112 20-148 29-151 (200)
408 KOG0927 Predicted transporter 98.4 9.3E-07 2E-11 78.6 6.7 35 16-50 413-447 (614)
409 TIGR02868 CydC thiol reductant 98.4 2.1E-06 4.7E-11 78.9 9.4 31 18-48 360-390 (529)
410 COG3839 MalK ABC-type sugar tr 98.4 2.6E-06 5.7E-11 72.9 9.2 30 20-49 30-59 (338)
411 PRK11248 tauB taurine transpor 98.4 1.5E-05 3.3E-10 66.3 13.6 31 18-48 26-56 (255)
412 PRK09544 znuC high-affinity zi 98.3 3E-06 6.5E-11 70.4 9.3 31 18-48 29-59 (251)
413 KOG0464 Elongation factor G [T 98.3 1.5E-07 3.2E-12 81.1 1.4 127 8-151 22-168 (753)
414 PRK06731 flhF flagellar biosyn 98.3 9.5E-07 2.1E-11 73.8 6.1 122 18-151 74-225 (270)
415 PRK12727 flagellar biosynthesi 98.3 7.8E-06 1.7E-10 73.8 12.2 128 18-158 349-505 (559)
416 cd03261 ABC_Org_Solvent_Resist 98.3 5.9E-06 1.3E-10 67.9 10.7 31 18-48 25-55 (235)
417 cd03224 ABC_TM1139_LivF_branch 98.3 4.5E-06 9.7E-11 67.9 9.8 31 18-48 25-55 (222)
418 PRK11247 ssuB aliphatic sulfon 98.3 1.2E-05 2.6E-10 67.1 12.5 31 18-48 37-67 (257)
419 cd03268 ABC_BcrA_bacitracin_re 98.3 5.8E-06 1.2E-10 66.6 10.3 31 18-48 25-55 (208)
420 PRK15064 ABC transporter ATP-b 98.3 2.7E-06 5.8E-11 78.3 9.4 31 18-48 26-56 (530)
421 PRK12723 flagellar biosynthesi 98.3 2E-06 4.4E-11 75.4 8.1 122 19-151 174-326 (388)
422 TIGR03411 urea_trans_UrtD urea 98.3 5.4E-06 1.2E-10 68.4 10.2 31 18-48 27-57 (242)
423 TIGR01188 drrA daunorubicin re 98.3 2.1E-06 4.7E-11 73.2 8.0 31 18-48 18-48 (302)
424 PRK13536 nodulation factor exp 98.3 2.8E-06 6E-11 73.6 8.8 31 18-48 66-96 (340)
425 cd03226 ABC_cobalt_CbiO_domain 98.3 5.8E-06 1.3E-10 66.5 10.1 31 18-48 25-55 (205)
426 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.3 1.2E-05 2.5E-10 65.3 12.0 31 18-48 29-59 (218)
427 cd03265 ABC_DrrA DrrA is the A 98.3 2.2E-06 4.8E-11 69.7 7.7 31 18-48 25-55 (220)
428 TIGR02673 FtsE cell division A 98.3 5.4E-06 1.2E-10 67.1 9.9 31 18-48 27-57 (214)
429 PRK13538 cytochrome c biogenes 98.3 8.3E-06 1.8E-10 65.5 10.9 31 18-48 26-56 (204)
430 cd03263 ABC_subfamily_A The AB 98.3 6.4E-06 1.4E-10 66.9 10.4 31 18-48 27-57 (220)
431 TIGR00960 3a0501s02 Type II (G 98.3 2.9E-06 6.2E-11 68.8 8.3 31 18-48 28-58 (216)
432 COG5257 GCD11 Translation init 98.3 3.4E-06 7.4E-11 70.6 8.7 120 17-151 8-154 (415)
433 cd03278 ABC_SMC_barmotin Barmo 98.3 6.8E-06 1.5E-10 65.7 10.3 43 103-149 134-177 (197)
434 TIGR01184 ntrCD nitrate transp 98.3 1.9E-05 4.1E-10 64.7 13.2 30 19-48 11-40 (230)
435 TIGR01288 nodI ATP-binding ABC 98.3 2.5E-06 5.4E-11 72.9 8.2 31 18-48 29-59 (303)
436 TIGR03608 L_ocin_972_ABC putat 98.3 3.1E-06 6.7E-11 68.0 8.3 31 18-48 23-53 (206)
437 PRK06995 flhF flagellar biosyn 98.3 1.7E-06 3.7E-11 77.6 7.4 25 19-43 256-280 (484)
438 cd03219 ABC_Mj1267_LivG_branch 98.3 4.8E-06 1.1E-10 68.4 9.6 31 18-48 25-55 (236)
439 TIGR03522 GldA_ABC_ATP gliding 98.3 6.6E-06 1.4E-10 70.2 10.7 31 18-48 27-57 (301)
440 cd03292 ABC_FtsE_transporter F 98.3 1.2E-05 2.5E-10 65.1 11.7 31 18-48 26-56 (214)
441 PRK10895 lipopolysaccharide AB 98.3 5.7E-06 1.2E-10 68.2 10.0 31 18-48 28-58 (241)
442 PRK11174 cysteine/glutathione 98.3 5E-06 1.1E-10 77.4 10.7 30 18-48 375-404 (588)
443 PRK13546 teichoic acids export 98.3 3.7E-06 8.1E-11 70.3 9.0 31 18-48 49-79 (264)
444 cd03266 ABC_NatA_sodium_export 98.3 6.3E-06 1.4E-10 66.9 10.1 31 18-48 30-60 (218)
445 COG3523 IcmF Type VI protein s 98.3 2.2E-06 4.8E-11 83.6 8.5 130 22-163 128-278 (1188)
446 PRK00771 signal recognition pa 98.3 1.9E-06 4E-11 76.8 7.4 121 18-150 94-245 (437)
447 cd03262 ABC_HisP_GlnQ_permease 98.3 1.4E-05 3E-10 64.6 11.9 31 18-48 25-55 (213)
448 cd03269 ABC_putative_ATPase Th 98.3 2.3E-06 5E-11 69.0 7.4 31 18-48 25-55 (210)
449 TIGR01189 ccmA heme ABC export 98.3 1.1E-05 2.5E-10 64.4 11.3 31 18-48 25-55 (198)
450 cd03112 CobW_like The function 98.3 5.8E-06 1.3E-10 63.7 9.2 22 21-42 2-23 (158)
451 cd03259 ABC_Carb_Solutes_like 98.3 9.3E-06 2E-10 65.6 10.7 31 18-48 25-55 (213)
452 cd03240 ABC_Rad50 The catalyti 98.3 1.7E-05 3.8E-10 63.7 12.1 43 105-149 140-184 (204)
453 COG2274 SunT ABC-type bacterio 98.3 3.9E-06 8.6E-11 78.9 9.5 32 17-48 497-528 (709)
454 TIGR03410 urea_trans_UrtE urea 98.3 5.4E-06 1.2E-10 67.9 9.2 31 18-48 25-55 (230)
455 cd03301 ABC_MalK_N The N-termi 98.3 1.3E-05 2.8E-10 64.8 11.3 31 18-48 25-55 (213)
456 cd00066 G-alpha G protein alph 98.3 8.2E-06 1.8E-10 70.1 10.6 74 67-151 159-242 (317)
457 PRK13537 nodulation ABC transp 98.3 3.5E-06 7.6E-11 72.1 8.2 31 18-48 32-62 (306)
458 PRK10867 signal recognition pa 98.3 3.3E-06 7.2E-11 75.0 8.3 71 68-150 183-253 (433)
459 PRK11300 livG leucine/isoleuci 98.3 8.3E-06 1.8E-10 67.8 10.0 31 18-48 30-60 (255)
460 PRK10584 putative ABC transpor 98.3 2.9E-05 6.3E-10 63.4 13.1 31 18-48 35-65 (228)
461 PRK13540 cytochrome c biogenes 98.3 4.1E-06 8.9E-11 67.1 7.9 31 18-48 26-56 (200)
462 cd03294 ABC_Pro_Gly_Bertaine T 98.3 1.5E-05 3.2E-10 66.9 11.5 31 18-48 49-79 (269)
463 smart00275 G_alpha G protein a 98.3 1.2E-05 2.6E-10 69.7 11.2 74 67-151 182-265 (342)
464 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.3 1.7E-05 3.8E-10 64.7 11.6 30 18-47 47-76 (224)
465 TIGR01277 thiQ thiamine ABC tr 98.3 1.9E-05 4E-10 63.9 11.7 31 18-48 23-53 (213)
466 PRK13539 cytochrome c biogenes 98.2 2E-05 4.3E-10 63.5 11.6 31 18-48 27-57 (207)
467 cd03279 ABC_sbcCD SbcCD and ot 98.2 6.7E-05 1.5E-09 60.7 14.7 23 19-41 28-50 (213)
468 cd03254 ABCC_Glucan_exporter_l 98.2 8.6E-06 1.9E-10 66.6 9.6 31 18-48 28-58 (229)
469 cd03281 ABC_MSH5_euk MutS5 hom 98.2 1.5E-05 3.2E-10 64.6 10.7 21 20-40 30-50 (213)
470 COG3845 ABC-type uncharacteriz 98.2 6.5E-06 1.4E-10 72.7 9.1 29 20-48 31-59 (501)
471 PRK11176 lipid transporter ATP 98.2 9E-06 1.9E-10 75.6 10.6 31 18-48 368-398 (582)
472 TIGR03740 galliderm_ABC gallid 98.2 2.8E-05 6.2E-10 63.3 12.4 31 18-48 25-55 (223)
473 PRK11614 livF leucine/isoleuci 98.2 1.2E-05 2.5E-10 66.2 10.1 31 18-48 30-60 (237)
474 PRK13545 tagH teichoic acids e 98.2 4.5E-05 9.8E-10 69.1 14.5 31 18-48 49-79 (549)
475 COG4987 CydC ABC-type transpor 98.2 4.9E-06 1.1E-10 74.2 8.1 40 106-149 494-534 (573)
476 PLN03073 ABC transporter F fam 98.2 7.3E-06 1.6E-10 77.7 9.9 31 18-48 534-564 (718)
477 PRK10908 cell division protein 98.2 1.2E-05 2.5E-10 65.5 9.9 31 18-48 27-57 (222)
478 PRK13657 cyclic beta-1,2-gluca 98.2 9.1E-06 2E-10 75.7 10.4 31 18-48 360-390 (588)
479 PRK15439 autoinducer 2 ABC tra 98.2 8.4E-06 1.8E-10 74.6 9.9 31 18-48 36-66 (510)
480 cd03244 ABCC_MRP_domain2 Domai 98.2 1.2E-05 2.6E-10 65.4 9.5 30 19-48 30-59 (221)
481 COG1127 Ttg2A ABC-type transpo 98.2 5.8E-06 1.3E-10 66.7 7.4 30 19-48 34-63 (263)
482 KOG0465 Mitochondrial elongati 98.2 1.4E-06 3.1E-11 78.2 4.3 152 17-185 37-210 (721)
483 cd03236 ABC_RNaseL_inhibitor_d 98.2 1.3E-05 2.9E-10 66.7 9.8 32 17-48 24-55 (255)
484 PRK11819 putative ABC transpor 98.2 5.5E-06 1.2E-10 76.6 8.4 31 18-48 349-379 (556)
485 PRK15064 ABC transporter ATP-b 98.2 5.6E-06 1.2E-10 76.2 8.3 31 18-48 344-374 (530)
486 cd03233 ABC_PDR_domain1 The pl 98.2 3E-05 6.5E-10 62.2 11.6 27 18-44 32-58 (202)
487 cd03245 ABCC_bacteriocin_expor 98.2 1.8E-05 3.8E-10 64.3 10.3 31 18-48 29-59 (220)
488 cd03369 ABCC_NFT1 Domain 2 of 98.2 1.4E-05 3.1E-10 64.3 9.6 31 18-48 33-63 (207)
489 PRK09536 btuD corrinoid ABC tr 98.2 2.1E-05 4.4E-10 69.6 11.3 31 18-48 28-58 (402)
490 TIGR02857 CydD thiol reductant 98.2 9.8E-06 2.1E-10 74.5 9.7 31 18-48 347-377 (529)
491 COG4598 HisP ABC-type histidin 98.2 3.9E-05 8.5E-10 59.5 11.3 43 106-151 172-215 (256)
492 cd03267 ABC_NatA_like Similar 98.2 2.8E-05 6.1E-10 63.9 11.5 31 18-48 46-76 (236)
493 PRK10790 putative multidrug tr 98.2 8.8E-06 1.9E-10 75.9 9.5 31 18-48 366-396 (592)
494 COG1117 PstB ABC-type phosphat 98.2 1.6E-05 3.6E-10 63.1 9.4 50 95-147 158-207 (253)
495 PRK13409 putative ATPase RIL; 98.2 8.5E-06 1.8E-10 75.7 9.1 35 15-49 95-129 (590)
496 TIGR03771 anch_rpt_ABC anchore 98.2 5.9E-05 1.3E-09 61.5 13.1 31 18-48 5-35 (223)
497 PRK11153 metN DL-methionine tr 98.2 1.3E-05 2.7E-10 69.7 9.5 31 18-48 30-60 (343)
498 cd03283 ABC_MutS-like MutS-lik 98.2 1.8E-05 4E-10 63.3 9.7 122 20-150 26-150 (199)
499 TIGR02142 modC_ABC molybdenum 98.2 2.8E-05 6E-10 67.9 11.6 30 19-48 23-52 (354)
500 PRK13631 cbiO cobalt transport 98.2 2.6E-05 5.5E-10 67.1 11.1 31 18-48 51-81 (320)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.97 E-value=3.6e-31 Score=214.23 Aligned_cols=177 Identities=42% Similarity=0.685 Sum_probs=135.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
++|+|+|++|+||||++|+|+|...+..+....+.|..+...... ..++.++||||||++++....+.+.+++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~-~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGE-VDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEE-ETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeee-ecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 589999999999999999999999988887777888888877664 6899999999999999888778888999999999
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHcccCCchhh---------
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK--------- 170 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~l~--------- 170 (253)
+.++||+||||++++ +++..+...++.+.+.||..+|++++||+|++|.+. +..+++|+....+..|+
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~--~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE--DDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT--TTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc--cccHHHHHhccCchhHhHHhhhcCCE
Confidence 999999999999999 999999999999999999999999999999999998 66677777732222222
Q ss_pred ----------------hhHHHhhhHHHHHHHcCC--CCHHHHHHHHHH
Q 025391 171 ----------------KGATKLRDQQFEVDSLKG--YSKREISELKEQ 200 (253)
Q Consensus 171 ----------------~~~~~~~~~~~~~~~~~g--y~~~~~~~~~~~ 200 (253)
+...+++.++.|+.+++| |+++.+++.+++
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~ 204 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEER 204 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHC
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 123455666666666666 666555544443
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.96 E-value=9.2e-28 Score=192.28 Aligned_cols=154 Identities=51% Similarity=0.809 Sum_probs=130.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
++|+|+|++|+|||||+|+|+|...+..+....+.|..+...... ..+..++||||||+.++....+....++.+++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV-WDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE-ECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 489999999999999999999998877766666788887776665 3788999999999998876666777888888888
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHcccCCchhhhhHHHhhhH
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ 179 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (253)
+.+++|++|+|++++ +++..+...++.+.+.||..++.++++|+||+|.+. +..+++|+.. .... +
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~--~~~~~~~~~~-~~~~----------l 145 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE--GGTLEDYLEN-SCEA----------L 145 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC--CCcHHHHHHh-ccHH----------H
Confidence 889999999999998 499999999999999999999999999999999998 6788999884 3222 5
Q ss_pred HHHHHHcCC
Q 025391 180 QFEVDSLKG 188 (253)
Q Consensus 180 ~~~~~~~~g 188 (253)
..+++.|++
T Consensus 146 ~~l~~~c~~ 154 (196)
T cd01852 146 KRLLEKCGG 154 (196)
T ss_pred HHHHHHhCC
Confidence 555666666
No 3
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.90 E-value=2e-22 Score=168.52 Aligned_cols=159 Identities=23% Similarity=0.290 Sum_probs=115.9
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 025391 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE 92 (253)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 92 (253)
+......++|+|+|.+|+|||||+|+|+|...+..+... +.+..+...... ..+..+.||||||+.+.....+.....
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~~~-~~G~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVSRT-RAGFTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEEE-ECCeEEEEEECCCCCchHHHHHHHHHH
Confidence 344556789999999999999999999999864433221 222222222233 478999999999998754322222222
Q ss_pred HHHHHHhhcCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHcccCCchhhh
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (253)
+ +++ ....++|++|||++++ .+++..+..+++.+...||..+|.+++||+||+|.+.+++.++++|+. .....++.
T Consensus 110 i-k~~-l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~-~~~~~lq~ 186 (313)
T TIGR00991 110 I-KRF-LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFS-KRSEALLR 186 (313)
T ss_pred H-HHH-hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHH-hcHHHHHH
Confidence 2 222 1224799999997764 378889999999999999999999999999999998766889999999 57777765
Q ss_pred hHHHh
Q 025391 172 GATKL 176 (253)
Q Consensus 172 ~~~~~ 176 (253)
.....
T Consensus 187 ~i~~~ 191 (313)
T TIGR00991 187 VIHSG 191 (313)
T ss_pred HHHHH
Confidence 55433
No 4
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.87 E-value=3.3e-21 Score=173.18 Aligned_cols=162 Identities=21% Similarity=0.279 Sum_probs=119.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
..++|+|+|++|+|||||+|+|+|...+.......++| .+...... ..+..+.||||||+.++.... .....+..++
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT-r~~ei~~~-idG~~L~VIDTPGL~dt~~dq-~~neeILk~I 193 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT-SVQEIEGL-VQGVKIRVIDTPGLKSSASDQ-SKNEKILSSV 193 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce-EEEEEEEE-ECCceEEEEECCCCCccccch-HHHHHHHHHH
Confidence 34799999999999999999999998776654333333 33222222 468899999999999875432 2344555555
Q ss_pred Hhh--cCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCh-----hhHHHHHcccCCchh
Q 025391 98 GMA--KDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-----ETLEDYLGRECPKPL 169 (253)
Q Consensus 98 ~~~--~~~~~~~l~v~d~~~-~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~-----~~~~~~~~~~~~~~l 169 (253)
..+ ..++|++|||++++. +.+.++...++.+.+.||..+|.++|||+||+|.+.+++ .++++|+. .+...+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~-~rs~~L 272 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVA-QRSHIV 272 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHh-hChHHH
Confidence 333 247899999998862 334467889999999999999999999999999997432 68999998 577777
Q ss_pred hhhHHHhhhHHHHH
Q 025391 170 KKGATKLRDQQFEV 183 (253)
Q Consensus 170 ~~~~~~~~~~~~~~ 183 (253)
++...++.....++
T Consensus 273 q~~Irq~~g~~~l~ 286 (763)
T TIGR00993 273 QQAIGQAVGDLRLM 286 (763)
T ss_pred HHHHHHhcCcceec
Confidence 76666555544433
No 5
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.84 E-value=1.6e-19 Score=148.87 Aligned_cols=136 Identities=29% Similarity=0.331 Sum_probs=100.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
.....++|+|+|++|+|||||+|+|+|...+..+.. .+.|..+...... .++..+.||||||+.++.... .....+.
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~-~~~T~~~~~~~~~-~~g~~i~vIDTPGl~~~~~~~-~~~~~~~ 103 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAF-QSETLRVREVSGT-VDGFKLNIIDTPGLLESVMDQ-RVNRKIL 103 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCceEEEEEEEEE-ECCeEEEEEECCCcCcchhhH-HHHHHHH
Confidence 345668999999999999999999999876544422 2345545444443 578899999999998764322 1223333
Q ss_pred HHHHhhc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 025391 95 KCIGMAK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (253)
Q Consensus 95 ~~~~~~~--~~~~~~l~v~d~~-~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~ 153 (253)
..+..+. .++|+++||..++ .+++..+..+++.+.+.||..+|.+++||+||+|...++
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 3333222 3679999998775 378888899999999999999999999999999998743
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=142.30 Aligned_cols=123 Identities=22% Similarity=0.309 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
..|+|||++++|||||+|.|+|.... -.++.+.|+......+...++..++++||||++.. .....+.+.+....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~Kis--IvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~~ 81 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKIS--IVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAARS 81 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceE--eecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHHH
Confidence 57999999999999999999999984 44555666666666666667889999999999875 34455777788888
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
++..+|+++||+|++..++..+...++.++.. ..|+++++||.|....
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~ 129 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKP 129 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCc
Confidence 88999999999999988999999998888772 2489999999999873
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=143.78 Aligned_cols=155 Identities=24% Similarity=0.218 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
+.|+|||++++|||||+|+|+|....... +..|+|.+..+.... +.+..+.+|||+|+.+.. .+...+.++.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~-D~pGvTRDr~y~~~~-~~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVS-DTPGVTRDRIYGDAE-WLGREFILIDTGGLDDGD--EDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEee-cCCCCccCCccceeE-EcCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence 68999999999999999999999875443 456788888777766 578889999999998533 34455677777777
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHcccCCchhhhhHHHhhhH
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ 179 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (253)
+...+|++|||+|....+++.|..+.++++.. .+|+++|+||+|... .....-+|++.-.+..+--+..-...+
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~-~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLK-AEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCch-hhhhHHHHHhcCCCCceEeehhhccCH
Confidence 77888999999999989999999999998842 258999999999984 134556677755555544444444444
Q ss_pred HHHHH
Q 025391 180 QFEVD 184 (253)
Q Consensus 180 ~~~~~ 184 (253)
..+++
T Consensus 154 ~dLld 158 (444)
T COG1160 154 GDLLD 158 (444)
T ss_pred HHHHH
Confidence 44443
No 8
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.75 E-value=4.5e-17 Score=119.33 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=79.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
+|+|+|.+|+|||||+|+|++......+.. .+.|....+..+. ..+..+.++||||+.+........ ..+...+...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~~~~~~~-~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDPVYGQFE-YNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSEEEEEEE-ETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeeeeeeeee-eceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence 699999999999999999999754334333 3445545443333 478888999999998644322211 2333444555
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k 146 (253)
..+|++++|+++..+.+..+..+++++. ..+|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 7889999999987544445566666663 23589999997
No 9
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.73 E-value=1.7e-16 Score=133.13 Aligned_cols=120 Identities=20% Similarity=0.225 Sum_probs=81.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
+|+|+|++|||||||+|+|+|....... +.+.|+......+....+..+.+|||||+.+... ...+.+......+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs--~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~---~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITS--PKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH---SLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecC--CCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc---hHHHHHHHHHHHH
Confidence 7999999999999999999998753322 2222332233333334566799999999976421 2223444445556
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+..+|++++|+|++...+.. ..++..+.. . ..|+++|+||+|...
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~-~----~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQN-L----KRPVVLTRNKLDNKF 121 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHHHHHHHh-c----CCCEEEEEECeeCCC
Confidence 67889999999998655543 444454443 2 258999999999974
No 10
>PRK00089 era GTPase Era; Reviewed
Probab=99.72 E-value=3.2e-16 Score=133.05 Aligned_cols=123 Identities=21% Similarity=0.296 Sum_probs=86.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
...|+|+|++|||||||+|+|+|....... +...|+......+....+..++++||||+.+.. ......+.....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs--~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~ 79 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVS--PKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW 79 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecC--CCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence 368999999999999999999998763332 223333333333333345789999999997644 223344445555
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+...+|++++|+|++..++..+..+++.+... ..|+++|+||+|...
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~ 127 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVK 127 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCC
Confidence 566789999999999876777776666665531 258999999999984
No 11
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.71 E-value=8.1e-17 Score=122.87 Aligned_cols=119 Identities=24% Similarity=0.293 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+|+++|.+++|||||+|+|+|..... + ...+.|.......+.. .+..+.++|+||.++......+ +++......
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v-~-n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKV-G-NWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEE--ERVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEE-E-ESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHH--HHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcee-c-CCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcH--HHHHHHHHh
Confidence 379999999999999999999998532 2 2356677766665553 7799999999999876543321 222222221
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+|++++|+|++ ++. .+..++.++.+. | .|+++++|++|...
T Consensus 76 -~~~~D~ii~VvDa~-~l~-r~l~l~~ql~e~-g----~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 76 -SEKPDLIIVVVDAT-NLE-RNLYLTLQLLEL-G----IPVVVVLNKMDEAE 119 (156)
T ss_dssp -HTSSSEEEEEEEGG-GHH-HHHHHHHHHHHT-T----SSEEEEEETHHHHH
T ss_pred -hcCCCEEEEECCCC-CHH-HHHHHHHHHHHc-C----CCEEEEEeCHHHHH
Confidence 36899999999998 543 334455555553 4 48999999999985
No 12
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.71 E-value=4.9e-16 Score=119.89 Aligned_cols=123 Identities=22% Similarity=0.263 Sum_probs=83.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.++|+++|++|+|||||+|.|+|......... ..+............+..+.+|||||+.+...... ..+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~---~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPK--PQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG---ERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCC--CCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH---HHHHHHHH
Confidence 47999999999999999999999865333221 12222222222233467899999999976432211 22333444
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+.+|++++|++++...+.....+...+... ..|+++|+||+|...
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVK 125 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccc
Confidence 556788999999999866666666666665543 247999999999973
No 13
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.71 E-value=4.3e-16 Score=121.19 Aligned_cols=124 Identities=23% Similarity=0.203 Sum_probs=76.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
++|+++|.+|+|||||+|+|++...... .....|......... ..+..+.+|||||+.+.......... . ..+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~-~-~~~~~ 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFD-YKYLRWQVIDTPGLLDRPLEERNTIE-M-QAITA 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEc-cCceEEEEEECCCcCCccccCCchHH-H-HHHHH
Confidence 4899999999999999999999764211 112233334333333 35678999999998653221110000 0 11111
Q ss_pred hcCCccEEEEEEeCCCCCC---HHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFS---QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~---~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....+|++|+|+|++++.+ .....++..+...++ ..|+++|+||+|...
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~ 127 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLT 127 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCc
Confidence 1223589999999985433 222445566655432 358999999999975
No 14
>PRK15494 era GTPase Era; Provisional
Probab=99.70 E-value=5.3e-16 Score=133.96 Aligned_cols=134 Identities=21% Similarity=0.287 Sum_probs=88.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+++|.+|+|||||+|+|+|.......+ ..+.|.......+. .++..+.+|||||+.+.... ....+.+...
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~-k~~tTr~~~~~~~~-~~~~qi~~~DTpG~~~~~~~---l~~~~~r~~~ 126 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTP-KVQTTRSIITGIIT-LKDTQVILYDTPGIFEPKGS---LEKAMVRCAW 126 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccC-CCCCccCcEEEEEE-eCCeEEEEEECCCcCCCccc---HHHHHHHHHH
Confidence 3599999999999999999999987532221 22233333222233 46778999999999653321 2234444444
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHc
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~ 162 (253)
.++.++|++|+|+|....++..+..++..+... + .|.++|+||+|........+.+++.
T Consensus 127 ~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~~~~~~~~~l~ 185 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESKYLNDIKAFLT 185 (339)
T ss_pred HHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccccHHHHHHHHH
Confidence 456788999999998877887776666666542 2 3567899999986422233445554
No 15
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.70 E-value=3.7e-16 Score=121.20 Aligned_cols=119 Identities=19% Similarity=0.156 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+|+++|++|+|||||++++++...........+........... .....+.+|||||... +......
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~-----------~~~~~~~ 68 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR-NKEVRVNFFDLSGHPE-----------YLEVRNE 68 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CeEEEEEEEECCccHH-----------HHHHHHH
Confidence 489999999999999999999886533222111111111111111 1245788999999732 3344455
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc---cccCeEEEEEeCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK---KIFDYMIVVFTGGDEL 150 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~---~~~~~~ivv~~k~D~~ 150 (253)
++.++|++|+|+|++++-+... ..++..+.+..+. ....|+++|+||+|..
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 6688999999999985544332 3445555554332 1346899999999986
No 16
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.70 E-value=1.7e-15 Score=119.43 Aligned_cols=125 Identities=18% Similarity=0.281 Sum_probs=82.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...++|+|+|++|+|||||+|.|++...........+.|..+..+.. +..+.+|||||+........ ....+...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpG~~~~~~~~~-~~~~~~~~ 90 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV----NDGFRLVDLPGYGYAKVSKE-EKEKWQKL 90 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe----CCcEEEEeCCCCccccCChh-HHHHHHHH
Confidence 45589999999999999999999987521111122334444443322 24789999999865433221 11222222
Q ss_pred HHhh---cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMA---KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~---~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+..+ ....|++++|+|++.+++..+..+++.+... ..|+++|+||+|...
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 2222 2356899999999888988887777666542 257999999999975
No 17
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.6e-16 Score=119.94 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=103.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.-++|+|+|.+|+|||.|+.++.+.........+.++........+. .+...+.||||+|. ++++..+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~-gk~iKlQIWDTAGQ-----------ERFrtit 75 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD-GKTIKLQIWDTAGQ-----------ERFRTIT 75 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec-ceEEEEEeeecccc-----------HHHhhhh
Confidence 44899999999999999999999887655544455554444333332 23458999999998 6777888
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC---hhhHHHHHcccCCc-hhhhh
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPK-PLKKG 172 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~---~~~~~~~~~~~~~~-~l~~~ 172 (253)
..+++++|++|+|+|+|..-|... ..|+..+.+..+.. .|.++|.||+|+.+.. ......|.....-. +++++
T Consensus 76 ~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETS 153 (205)
T KOG0084|consen 76 SSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETS 153 (205)
T ss_pred HhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecc
Confidence 999999999999999997666655 55666666654443 5899999999997421 33444555533332 44444
Q ss_pred HHHhhhHHHH
Q 025391 173 ATKLRDQQFE 182 (253)
Q Consensus 173 ~~~~~~~~~~ 182 (253)
.+.-...+..
T Consensus 154 AK~~~NVe~~ 163 (205)
T KOG0084|consen 154 AKDSTNVEDA 163 (205)
T ss_pred cCCccCHHHH
Confidence 4433333333
No 18
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.69 E-value=1e-15 Score=123.22 Aligned_cols=128 Identities=25% Similarity=0.209 Sum_probs=80.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+.++|+|+|++|||||||+|.|++...+.... ...|.......+.......+.+|||||+.+... ......+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQ--LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCc--cceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence 345899999999999999999999976432221 222333333334332334899999999864322 1122223222
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~-~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+ ..+..+|++++|+|++++.+.... .+.+.+... +. ...|+++|+||+|...
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~-~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GA-EDIPMILVLNKIDLLD 167 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-Cc-CCCCEEEEEEccccCC
Confidence 2 234578999999999866555443 333444433 21 1258999999999976
No 19
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.69 E-value=4.9e-16 Score=120.37 Aligned_cols=115 Identities=19% Similarity=0.115 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
++|+++|.+|+|||||++++++...........+.+... ..... .....+.+|||||... +.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYK--HNAKFEGKTILVDFWDTAGQER-----------FQTMHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEE--EEEEECCEEEEEEEEeCCCchh-----------hhhhhH
Confidence 489999999999999999998765422221111111111 11111 1234688999999742 334555
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
.++.++|++|+|+|++++.+..+ ..++..+.+.. ...|+++|+||.|..
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLD 117 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCc
Confidence 66788899999999986655444 34555554432 235899999999974
No 20
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.68 E-value=1.2e-15 Score=119.06 Aligned_cols=119 Identities=16% Similarity=0.115 Sum_probs=76.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+++|.+|+|||||++.+++.........+.+.+......... .....+.+|||||. .++.....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~-----------~~~~~~~~ 71 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-GKQIKLQIWDTAGQ-----------ESFRSITR 71 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCc-----------HHHHHHHH
Confidence 4799999999999999999999876533332222222222222111 12347899999995 33444455
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++..+|++++|+|++++-+... ..++..+..... ...|++||.||.|...
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLES 123 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 66678899999999984433332 223333333221 2358999999999874
No 21
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.68 E-value=8.4e-16 Score=117.83 Aligned_cols=119 Identities=25% Similarity=0.283 Sum_probs=83.2
Q ss_pred EEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcC
Q 025391 23 VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD 102 (253)
Q Consensus 23 ~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (253)
+++|.+|+|||||+|.|++........ ..+.|......... ..+..+.+|||||+.+... .....+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~-~~~~t~~~~~~~~~-~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVED-TPGVTRDRIYGEAE-WGGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecC-CCCceeCceeEEEE-ECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 589999999999999999875422222 22344444444443 3678899999999976432 223344444445557
Q ss_pred CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 103 GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 103 ~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++|++++|+|+.++.+..+..+.+++... + .|+++|+||+|...
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~ 119 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIK 119 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCC
Confidence 78999999999877777776666666543 2 58999999999986
No 22
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=126.67 Aligned_cols=130 Identities=22% Similarity=0.247 Sum_probs=90.6
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccce-eeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHH
Q 025391 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG 90 (253)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 90 (253)
+|+.+...++|+++|.+++|||||++.|++..+ ...+.+.|+ ....+++. .++.++.+|||||+.|-.... .+
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp---EvA~YPFTTK~i~vGhfe-~~~~R~QvIDTPGlLDRPl~E--rN 234 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP---EVAPYPFTTKGIHVGHFE-RGYLRIQVIDTPGLLDRPLEE--RN 234 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC---ccCCCCccccceeEeeee-cCCceEEEecCCcccCCChHH--hc
Confidence 466666779999999999999999999999875 333444444 44445444 478899999999999854332 22
Q ss_pred HHHHHHHHhhcCCccEEEEEEeCCC--CCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 91 KEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~d~~~--~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.-=.+++.....-.+++||++|++. .++.+. ..+++.+...|. .|+++|+||.|...
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~ 294 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIAD 294 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccc
Confidence 2112222222223378999999864 455554 556677777775 47999999999986
No 23
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.67 E-value=1.5e-15 Score=118.23 Aligned_cols=124 Identities=20% Similarity=0.168 Sum_probs=74.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ-VVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
+|+++|.+|||||||+|+|.+.... .+. ..+.|.......... .+. .+.+|||||+.+...........+. .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~-~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~----~ 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IAD-YPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFL----R 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-ccC-CCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHH----H
Confidence 6899999999999999999986541 111 112233333333332 444 8999999998643222111112221 2
Q ss_pred hcCCccEEEEEEeCCCC-CCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSR-FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~-~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....+|++++|+|++++ -+... ..+.+.+..........|+++|+||+|...
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 22456899999999854 22222 344444544322112468999999999875
No 24
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.67 E-value=2.3e-15 Score=115.29 Aligned_cols=120 Identities=26% Similarity=0.249 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+|+++|++|+|||||+|+|++........ ..+.+......... ..+..+.+|||||+.+...... .........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEESID-IGGIPVRLIDTAGIRETEDEIE---KIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEEEE-eCCEEEEEEECCCcCCCcchHH---HHHHHHHHH
Confidence 689999999999999999999876422221 22333333333333 3577899999999976543211 111122234
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++..+|++++|+|++.+.+..+...+.. . ...|+++|+||+|...
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~----~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL---P----ADKPIIVVLNKSDLLP 121 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh---h----cCCCEEEEEEchhcCC
Confidence 4467899999999997777666554433 2 2358999999999986
No 25
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.67 E-value=6.1e-15 Score=123.78 Aligned_cols=126 Identities=23% Similarity=0.263 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCC------CCccceeeeeeeeE-eeCC--eEEEEEeCCCCCCCCCCcHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTV-LKDG--QVVNVIDTPGLFDFSAGSEFV 89 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~------~~~~t~~~~~~~~~-~~~~--~~~~liDtpG~~~~~~~~~~~ 89 (253)
.++|+++|++|+|||||+|+|++......... ....|......... ..++ ..+++|||||+.+... ....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-NSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-chhh
Confidence 47999999999999999999999876544321 11223222222111 1234 4799999999987643 3333
Q ss_pred HHHHHHHHHh----------------h--cCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 90 GKEIVKCIGM----------------A--KDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 90 ~~~~~~~~~~----------------~--~~~~~~~l~v~d~~~-~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
+..+...+.. . ...+|+++|+++++. .+.+.+...++.+.. ..|+++|+||+|.+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCcC
Confidence 3333322111 1 125799999998863 677788778877764 14799999999998
Q ss_pred C
Q 025391 151 E 151 (253)
Q Consensus 151 ~ 151 (253)
.
T Consensus 157 ~ 157 (276)
T cd01850 157 T 157 (276)
T ss_pred C
Confidence 6
No 26
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=2.1e-15 Score=134.91 Aligned_cols=132 Identities=22% Similarity=0.248 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
++|+|+|.+|+|||||+|.|+|........ ..+.|......... +.+..+.+|||||+.+.. ......+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~~~-~~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGEAE-WLGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEEEE-ECCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 589999999999999999999986532222 33455555544444 467899999999997622 1233445555556
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHc
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~ 162 (253)
++..+|++|+|+|++++++..+..+..++.+. + .|+++|+||+|... ......++..
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~----~piilv~NK~D~~~-~~~~~~~~~~ 133 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-N----KPVILVVNKVDGPD-EEADAYEFYS 133 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCcc-chhhHHHHHh
Confidence 66788999999999988898888888887764 3 48999999999653 1233444443
No 27
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=4.7e-15 Score=115.82 Aligned_cols=125 Identities=20% Similarity=0.265 Sum_probs=93.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...+-|+++|+++||||||||+|+|+....-...+.|.|...+++.+. ..+.++|.||++=...+. .....+...
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k-~~~e~w~~~ 96 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPK-EVKEKWKKL 96 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCH-HHHHHHHHH
Confidence 345789999999999999999999977422333456777777776543 237899999987555443 444455554
Q ss_pred HHhhcC---CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKD---GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~---~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+..++. ...++++++|+.+.+...|++.++++... + .|++||+||+|.+.
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-~----i~~~vv~tK~DKi~ 149 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-G----IPVIVVLTKADKLK 149 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCeEEEEEccccCC
Confidence 443332 35788999999989999999999999875 3 47999999999997
No 28
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.67 E-value=2.3e-15 Score=117.23 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=75.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
..+|+++|++|+|||||++++++.........+.+.. .....+... ....+.+|||||... +....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~--~~~~~~~~~~~~~~l~l~D~~g~~~-----------~~~~~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGID--FKIRTIELDGKKIKLQIWDTAGQER-----------FRTIT 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccce--EEEEEEEECCEEEEEEEEeCCchHH-----------HHHHH
Confidence 4799999999999999999999876422222222221 122222221 124788999999632 23344
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++++|+|++++.+... ..++..+..... ...|+++|.||.|...
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 455678899999999985544333 333343433322 2358999999999974
No 29
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=1.7e-15 Score=121.66 Aligned_cols=150 Identities=11% Similarity=0.045 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeee--eeeeEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
++|+++|.+|+|||||++.+++....... ..|.... ...+... ....+.+|||||... +..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~----~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHY----KATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGG 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhh
Confidence 48999999999999999999986542211 1222211 1222221 245788999999742 334
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc--ccccCeEEEEEeCCCCCCC---ChhhHHHHHcccC-Cch
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDELED---NDETLEDYLGREC-PKP 168 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g--~~~~~~~ivv~~k~D~~~~---~~~~~~~~~~~~~-~~~ 168 (253)
....++.++|++|+|+|++++.+... ..+...+..... .....|++||+||.|.... ....+.++..... ..+
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGW 145 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceE
Confidence 45566788999999999986554443 233334433221 1234589999999998621 1334455554322 234
Q ss_pred hhhhHHHhhhHHHHHH
Q 025391 169 LKKGATKLRDQQFEVD 184 (253)
Q Consensus 169 l~~~~~~~~~~~~~~~ 184 (253)
+..+......++++++
T Consensus 146 ~e~Sak~~~~v~e~f~ 161 (201)
T cd04107 146 FETSAKEGINIEEAMR 161 (201)
T ss_pred EEEeCCCCCCHHHHHH
Confidence 4444444444444444
No 30
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.66 E-value=2.3e-15 Score=126.35 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=84.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCC--------CCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCcHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--------SSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEF 88 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~--------~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~ 88 (253)
.++|+++|.+|+|||||+|+|++......... .............. .. ...++|+||||+.+.- ....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~-e~~~~l~LtiiDTpGfGd~i-~n~~ 81 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELE-ENGVKLNLTIIDTPGFGDNI-DNSD 81 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEE-ETCEEEEEEEEEEC-CSSSS-THCH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEec-cCCcceEEEEEeCCCccccc-cchh
Confidence 37999999999999999999999876554310 01111222222222 12 2478899999998753 3344
Q ss_pred HHHHHHHHHHhhc-----------------CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 89 VGKEIVKCIGMAK-----------------DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 89 ~~~~~~~~~~~~~-----------------~~~~~~l~v~d~~-~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
.+..+...+...+ +++|++||+++++ .++++.+...++.|.+. .++|+|++|+|.+
T Consensus 82 ~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~l 155 (281)
T PF00735_consen 82 CWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEeccccc
Confidence 4444444332211 4579999999986 46899998888777664 4899999999999
Q ss_pred CCChhhHHHHHcc
Q 025391 151 EDNDETLEDYLGR 163 (253)
Q Consensus 151 ~~~~~~~~~~~~~ 163 (253)
. ...+..+...
T Consensus 156 t--~~el~~~k~~ 166 (281)
T PF00735_consen 156 T--PEELQAFKQR 166 (281)
T ss_dssp ---HHHHHHHHHH
T ss_pred C--HHHHHHHHHH
Confidence 8 7777666553
No 31
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=3.8e-15 Score=134.22 Aligned_cols=125 Identities=25% Similarity=0.217 Sum_probs=91.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
+..++|+|||.+|||||||+|+|++....... ...++|......... +.+..+.+|||||+.... ......+...
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~-~~~~~~~l~DT~G~~~~~---~~~~~~~~~~ 110 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAE-WNGRRFTVVDTGGWEPDA---KGLQASVAEQ 110 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEE-ECCcEEEEEeCCCcCCcc---hhHHHHHHHH
Confidence 34579999999999999999999997643222 234555555544444 477889999999986321 1233445555
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++|+|+|++++.+..+..+..++... ..|+++|+||+|...
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~ 160 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDER 160 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCc
Confidence 55666788999999999988888777777777642 258999999999864
No 32
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.66 E-value=2.7e-15 Score=116.65 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=73.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|++|+|||||++++++.........+.+...... .+. .. ...+.+|||||.. ++....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~--~~~-~~~~~~~l~i~Dt~G~~-----------~~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTR--IIE-VNGQKIKLQIWDTAGQE-----------RFRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEE--EEE-ECCEEEEEEEEECCCcH-----------HHHHHH
Confidence 6899999999999999999997754222211111111111 112 12 3468899999963 333444
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++.++|++|+|+|++++-+... ..++..+..... ...|+++|.||+|...
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEA 121 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 556788999999999986544333 233333333222 2358999999999864
No 33
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.66 E-value=5e-15 Score=114.44 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcccc-CCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.|+++|++|+|||||+|+|+|....... ....+.|....+.......+..+.+|||||.. .+...+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~-----------~~~~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE-----------KFIKNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH-----------HHHHHHHh
Confidence 6899999999999999999985321111 11123344444433333226789999999973 22233334
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+.++|++++|+|+++.........+..+.. .+. +|+++|+||+|...
T Consensus 71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~~ 118 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGI---KRGLVVLTKADLVD 118 (164)
T ss_pred hhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCC---CcEEEEEECccccC
Confidence 5578899999999975444444444443332 232 37999999999875
No 34
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.66 E-value=5.5e-15 Score=114.94 Aligned_cols=125 Identities=19% Similarity=0.186 Sum_probs=80.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV-KCI 97 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~-~~~ 97 (253)
.++|+++|.+|+|||||+|+|++......... .+.+......... ..+..+.+|||||+.+........ ..+. ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~iiDtpG~~~~~~~~~~~-e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDI-AGTTRDSIDVPFE-YDGKKYTLIDTAGIRRKGKVEEGI-EKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCC-CCCccCceeeEEE-ECCeeEEEEECCCCccccchhccH-HHHHHHHH
Confidence 47999999999999999999998764332222 2222222222222 356789999999997653221111 1111 111
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++|++++|+|++.+.+.....++..+... ..|+++++||+|...
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEE-----GKALVIVVNKWDLVE 127 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence 2334678999999999877776665554444331 248999999999876
No 35
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.66 E-value=3.5e-15 Score=133.21 Aligned_cols=121 Identities=26% Similarity=0.297 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
+|+|||++|+|||||+|+|++....... ...+.|..+...... +.+..+.+|||||+... .......+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~~-~~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDAE-WGGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEEE-ECCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 5899999999999999999997642222 234556655555554 47889999999998642 223345555556666
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+|++++|+|+++.++..+..+.+++++. + .|+++|+||+|...
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-~----~piilVvNK~D~~~ 121 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-G----KPVILVANKIDGKK 121 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-C----CCEEEEEECccCCc
Confidence 6788999999999988999998888888763 3 47999999999875
No 36
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.66 E-value=2.6e-15 Score=116.05 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+|+++|++|+|||||++.|++...........+.........+. .....+.+|||||... +......
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~~~~~ 68 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVG-GKRVKLQIWDTAGQER-----------FRSVTRS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CEEEEEEEEECcchHH-----------HHHhHHH
Confidence 489999999999999999999876432222222211111111111 1235788999999732 2333445
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+..+|++++|+|++++.+... ..++..+..... ...|+++|+||.|...
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 119 (161)
T cd04113 69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLAD 119 (161)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcch
Confidence 5678899999999986555443 334444433322 2358999999999874
No 37
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.66 E-value=3.3e-15 Score=116.11 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.+|+++|++|+|||||++++++.........+.+.. .....+.. .....+.+|||||.. .+.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~g~~-----------~~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID--FKVKTVFRNDKRVKLQIWDTAGQE-----------RYRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeE--EEEEEEEECCEEEEEEEEECCChH-----------HHHHHHH
Confidence 689999999999999999999876422222221211 11111211 123578899999963 2334445
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++.++|++++|+|.+++-+... ..+++.+..... ...|+++|+||+|...
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~ 120 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMED 120 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCc
Confidence 66789999999999875433322 333444433221 2358999999999864
No 38
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.66 E-value=4.9e-15 Score=128.23 Aligned_cols=126 Identities=22% Similarity=0.170 Sum_probs=82.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.++|+|+|.+|||||||+|+|++...+.. ...+.|.......+...++..+.+|||||+.... + ......+...+.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~-~~lie~f~~tle 264 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-P-HELVAAFRATLE 264 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCcccccC-C-HHHHHHHHHHHH
Confidence 47999999999999999999999864222 2223344444444444457789999999984321 1 122233433333
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~-~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....+|++|+|+|++++.+..... +...+.. ++. ...|+++|+||+|...
T Consensus 265 -~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~-l~~-~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 265 -EVREADLLLHVVDASDPDREEQIEAVEKVLEE-LGA-EDIPQLLVYNKIDLLD 315 (351)
T ss_pred -HHHhCCEEEEEEECCCCchHHHHHHHHHHHHH-hcc-CCCCEEEEEEeecCCC
Confidence 346789999999998666554432 2333433 332 1358999999999975
No 39
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.65 E-value=2.9e-15 Score=121.56 Aligned_cols=119 Identities=19% Similarity=0.130 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
++|+++|.+|+|||||++.+++........ ...+.......+... ....+.+|||||.. .....+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~--~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~-----------~~~~l~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYK--QTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS-----------IGGKML 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEEeCCCCEEEEEEEECCCcH-----------HHHHHH
Confidence 489999999999999999999875422111 111112111222221 23578899999963 223445
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~-~~~~~~ivv~~k~D~~~ 151 (253)
..++.++|++|+|+|++++-+... ..++..+.+..+. ....|+++|.||.|...
T Consensus 68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 556788999999999986544443 3455555555432 12347899999999864
No 40
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.65 E-value=3.5e-15 Score=115.17 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=75.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|++|+|||||++++++....... ....+.......+.. .+ ..+.+|||||.. .....+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~-----------~~~~~~ 66 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMYL-EDKTVRLQLWDTAGQE-----------RFRSLI 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEEE-CCEEEEEEEEECCCcH-----------HHHHHH
Confidence 38999999999999999999988653322 122222222222222 23 468999999963 233445
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+..+|++++|+|++++-+... ..++..+....+. ..|+++|+||.|...
T Consensus 67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~ 119 (161)
T cd01861 67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSD 119 (161)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccc
Confidence 556678899999999985544433 3344444333332 358999999999953
No 41
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=4.3e-15 Score=115.34 Aligned_cols=117 Identities=12% Similarity=0.131 Sum_probs=76.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.++|+++|++|+|||||++++.+.........+ .........+. ..+ ..+.+|||||.. .+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t--~~~~~~~~~~~-~~~~~~~l~i~D~~G~~-----------~~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNT--IGVDFTMKTLE-IEGKRVKLQIWDTAGQE-----------RFRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCc--cceEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHH
Confidence 489999999999999999999876542222111 11122222222 233 478999999962 33444
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEE 122 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 5556678899999999986544433 345555544322 2358999999999875
No 42
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.65 E-value=4.3e-15 Score=115.42 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.+|+++|++|+|||||++.+++.........+ .+.......+... ....+.+|||||.. .+.....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~~~ 69 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYIST--IGVDFKIRTIELDGKTIKLQIWDTAGQE-----------RFRTITS 69 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--cceeEEEEEEEECCEEEEEEEEECCCcH-----------hHHHHHH
Confidence 79999999999999999999987543221111 1212221222211 13468899999963 2334445
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++..+|++|+|+|++++-+... ..++..+..... ...|+++|.||.|...
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTD 121 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhccc
Confidence 56678899999999985443333 233344433321 2358999999999764
No 43
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.65 E-value=6.9e-15 Score=114.25 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+.|+|+|.+|+|||||+|+|++...... ...+.|........... .+..+.+|||||... +....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHH
Confidence 3699999999999999999998754222 22234444433333321 367899999999742 22333
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+..+|++++|+|+++.........+..+.. ++ .|+++|+||+|...
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~~ 116 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-AN----VPFIVALNKIDKPN 116 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEEceeccc
Confidence 344567899999999986666555555555543 22 47999999999874
No 44
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.65 E-value=5.3e-15 Score=114.38 Aligned_cols=118 Identities=19% Similarity=0.125 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+|+++|++|+|||||+|++++.........+.+.+......... .....+.+|||||.. ++......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~-----------~~~~~~~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQE-----------RYRSLAPM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchH-----------HHHHHHHH
Confidence 689999999999999999999887543222222221211111111 123578899999963 23333445
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++.++|++++|+|+++.-+... ..++..+..... ...|++++.||.|...
T Consensus 70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 120 (163)
T cd01860 70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLES 120 (163)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 5678899999999984433322 444455554432 2358999999999873
No 45
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.64 E-value=5.4e-15 Score=114.69 Aligned_cols=117 Identities=19% Similarity=0.176 Sum_probs=74.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+|+++|++|+|||||++++++.......... .+.......+.. .+ ..+.+|||||.. .+...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~l~D~~g~~-----------~~~~~ 68 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKST--IGVEFATRSIQI-DGKTIKAQIWDTAGQE-----------RYRAI 68 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--cceEEEEEEEEE-CCEEEEEEEEeCCChH-----------HHHHH
Confidence 379999999999999999999987642222111 222222222222 23 468899999963 23344
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....+..++++|+|+|+++..+... ..++..+...... ..|+++|+||.|...
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 4555678899999999985444433 2333434333221 258999999999864
No 46
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.64 E-value=4.3e-15 Score=115.48 Aligned_cols=119 Identities=23% Similarity=0.192 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+|+++|.+|+|||||++++++........++.+.+. ....... .....+.+|||||...+. .....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~-----------~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCS-KNICTLQITDTTGSHQFP-----------AMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEEC-CEEEEEEEEECCCCCcch-----------HHHHH
Confidence 6899999999999999999998764322222222111 1111111 134578899999986432 22334
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~-~~~~~ivv~~k~D~~~ 151 (253)
++.++|++++|+|++++.+... ..++..+....+.. ...|+++|.||.|...
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 5567899999999986665544 44556666554322 3468999999999864
No 47
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.64 E-value=6.2e-15 Score=113.84 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+|+++|++|+|||||+++|++...........+.+......... .....+.+|||||... +......
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~-----------~~~~~~~ 68 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-GKKVKLAIWDTAGQER-----------FRTLTSS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEECCCchh-----------hhhhhHH
Confidence 489999999999999999999876432222222222221111111 1235789999999642 2233344
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
++..+|++++|+|++++.+... ..++..+.... .....|+++|+||.|..
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYS-TNNDIVKMLVGNKIDKE 119 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhC-CCCCCcEEEEEECCccc
Confidence 5578899999999985554443 33444444432 23346899999999997
No 48
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.64 E-value=6.4e-15 Score=115.98 Aligned_cols=121 Identities=12% Similarity=0.021 Sum_probs=75.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe---------eCCeEEEEEeCCCCCCCCCCcHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---------KDGQVVNVIDTPGLFDFSAGSEFV 89 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~---------~~~~~~~liDtpG~~~~~~~~~~~ 89 (253)
.++|+++|++|+|||||++.+++.........+.+............ .....+.+|||||.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------- 73 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ---------- 73 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh----------
Confidence 48999999999999999999988754222111111111111111100 12357889999995
Q ss_pred HHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++......++.++|++++|+|++++-+... ..++..+..... ....|+++|.||+|...
T Consensus 74 -~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 74 -ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLED 134 (180)
T ss_pred -HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchh
Confidence 3344555666788999999999985444333 333333433211 12358999999999864
No 49
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=7.7e-15 Score=126.08 Aligned_cols=126 Identities=19% Similarity=0.177 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
..|+|||.++||||||+|+|++...- . ......|.......+...++..++++||||+.+.......+...+.+.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~-v-a~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi-- 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPK-I-ADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI-- 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCc-c-CCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--
Confidence 36899999999999999999986532 1 1222345555555554435678999999999764433223333333333
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+++++|+|+|+++.-+..+ ..+...+......-..+|++||+||+|...
T Consensus 235 --e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 235 --ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred --hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 45689999999985444444 334444444311112468999999999875
No 50
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.64 E-value=5.2e-15 Score=118.67 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=74.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..++|+++|++|+|||||++.+++.........+.+. ......+... ....+.+|||||... +...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~ 71 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGV--DFKIRTVEINGERVKLQIWDTAGQER-----------FRTI 71 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccc--eeEEEEEEECCEEEEEEEEeCCCchh-----------HHHH
Confidence 3589999999999999999999987542211111111 1111222211 234688999999632 2234
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++.+++++++|+|++++-+... ..++..+.... ...|++||+||.|...
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~ 124 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 4556678899999999986544333 33344443332 2358999999999864
No 51
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.64 E-value=5.8e-15 Score=114.19 Aligned_cols=117 Identities=23% Similarity=0.193 Sum_probs=73.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+|+++|++|+|||||++++++...........+ ........ ..+ ..+.+|||||..+. ...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~---~~~~~~~~-~~~~~~~~~i~Dt~G~~~~-----------~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE---DSYTKQCE-IDGQWAILDILDTAGQEEF-----------SAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc---ceEEEEEE-ECCEEEEEEEEECCCCcch-----------hHH
Confidence 47999999999999999999998654221111111 11111111 233 46889999997543 233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++.++|++++|+|+++.-+... ..++..+..... ....|+++|+||+|...
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEH 121 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccc
Confidence 4455577899999999985444333 333333433321 12358999999999864
No 52
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.64 E-value=7e-15 Score=116.87 Aligned_cols=150 Identities=14% Similarity=0.073 Sum_probs=93.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
...+|+++|..|+|||||+.++.+.... ... ....+.......+. .++ ..+.+|||||.. .+..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~-~~~-~~t~~~~~~~~~i~-~~~~~~~l~iwDt~G~~-----------~~~~ 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE-SPY-GYNMGIDYKTTTIL-LDGRRVKLQLWDTSGQG-----------RFCT 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCC-CCcceeEEEEEEEE-ECCEEEEEEEEeCCCcH-----------HHHH
Confidence 3489999999999999999999875431 111 11112222222222 233 578899999984 3334
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC---ChhhHHHHHcccCCchhhh
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKK 171 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~---~~~~~~~~~~~~~~~~l~~ 171 (253)
....++.++|++|+|+|++++.+... ..++..+.... ...|++||.||.|+... .......+.......+++.
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~ 147 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEV 147 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEe
Confidence 55566789999999999997766655 44555554433 24689999999998531 1234445554333345555
Q ss_pred hHHHhhhHHHHHH
Q 025391 172 GATKLRDQQFEVD 184 (253)
Q Consensus 172 ~~~~~~~~~~~~~ 184 (253)
+......++..+.
T Consensus 148 SAk~g~~V~~~F~ 160 (189)
T cd04121 148 SPLCNFNITESFT 160 (189)
T ss_pred cCCCCCCHHHHHH
Confidence 5555555555554
No 53
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.64 E-value=5.7e-15 Score=118.53 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+.|+++|..|+|||||++.++..........+ .+.......+. .++ ..+.+|||+|.. ++....
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~T--i~~~~~~~~i~-~~~~~v~l~iwDtaGqe-----------~~~~l~ 66 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSG--VGVDFKIKTVE-LRGKKIRLQIWDTAGQE-----------RFNSIT 66 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCc--ceeEEEEEEEE-ECCEEEEEEEEeCCCch-----------hhHHHH
Confidence 36899999999999999999876542211111 11122122222 233 578899999974 344555
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC---hhhHHHHHccc-CCchhhhh
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRE-CPKPLKKG 172 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~---~~~~~~~~~~~-~~~~l~~~ 172 (253)
..++.++|++|+|+|++++-+... ..++..+....+. ..|+++|.||.|..... .....++.... ...+++.+
T Consensus 67 ~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~--~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etS 144 (202)
T cd04120 67 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEAS 144 (202)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEec
Confidence 677789999999999997666555 3444444443322 35899999999985311 12223333221 22345555
Q ss_pred HHHhhhHHHHHH
Q 025391 173 ATKLRDQQFEVD 184 (253)
Q Consensus 173 ~~~~~~~~~~~~ 184 (253)
+.....+.+++.
T Consensus 145 Aktg~gV~e~F~ 156 (202)
T cd04120 145 AKDNFNVDEIFL 156 (202)
T ss_pred CCCCCCHHHHHH
Confidence 555555555554
No 54
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.64 E-value=1.8e-14 Score=113.97 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=74.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+++|.+|+|||||++++++...... ..+.+.+............+..+.+|||||.. .+.....
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-----------~~~~~~~ 70 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE-----------KLRPLWK 70 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcH-----------hHHHHHH
Confidence 47999999999999999999987654221 11112222111111111245689999999973 2334455
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++.++|++++|+|+++.-+... ..++..+..... ....|++||+||+|...
T Consensus 71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccc
Confidence 56778899999999885422222 222232333211 12468999999999864
No 55
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.64 E-value=6.1e-15 Score=112.78 Aligned_cols=117 Identities=20% Similarity=0.156 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
+||+++|++|+|||||+|.|++...........+.+......... .....+.+||+||.. .+......
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~-----------~~~~~~~~ 68 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID-GKTVKLQIWDTAGQE-----------RFRSITPS 68 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC-CEEEEEEEEecCChH-----------HHHHHHHH
Confidence 489999999999999999999887644322222222211111111 124678899999973 33344555
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
++..+|++++|+|++++-+... ..++..+..... ...|+++++||.|..
T Consensus 69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 6678899999999975322222 333444444321 235899999999996
No 56
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.63 E-value=7.1e-15 Score=113.62 Aligned_cols=116 Identities=19% Similarity=0.207 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.||+++|++|+|||||++.+++......... ..+.......... .+ ..+.+|||||.. .+....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~-----------~~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKS--TIGVDFKTKTIEV-DGKRVKLQIWDTAGQE-----------RFRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEE-CCEEEEEEEEECCChH-----------HHHHHH
Confidence 4899999999999999999998765222211 2222222222222 33 478899999963 233444
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++++|+|+++..+... ..++..+....+ ...|+++|+||.|...
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~ 119 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhccc
Confidence 556678899999999985444433 223333333322 2369999999999764
No 57
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=9.2e-15 Score=116.46 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccC-CCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA-SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.+|+++|.+|+|||||++.+++........ .+.+.........+. .....+.||||||.. .+.....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~-----------~~~~~~~ 68 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVD-GVKVKLQIWDTAGQE-----------RFRSVTH 68 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEEC-CEEEEEEEEeCCCcH-----------HHHHhhH
Confidence 489999999999999999998875422111 111111111111111 123578899999962 3334445
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++.++|++|+|+|++++.+... ..++..+.+.... ..|+++|+||.|...
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~ 120 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSG 120 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchh
Confidence 56678899999999986544433 3445555554322 358999999999863
No 58
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.63 E-value=1e-14 Score=116.83 Aligned_cols=126 Identities=15% Similarity=0.119 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+|+|.+|+|||||++.+++........+. .+.......+. .++ ..+.+|||||...+..... .+.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt--~~~~~~~~~i~-~~~~~~~l~i~Dt~G~~~~~~~~~---~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPT--EHRRLYRPAVV-LSGRVYDLHILDVPNMQRYPGTAG---QEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCc--cccccceeEEE-ECCEEEEEEEEeCCCcccCCccch---hHHHHHH
Confidence 48999999999999999999987542221111 11111111222 244 4678999999865432211 2222223
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g-~~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++|+|+|++++.+... ..+.+.+..... .....|+++|.||+|...
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 334578899999999986544443 333444444321 122368999999999964
No 59
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.63 E-value=8.1e-15 Score=113.51 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=73.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC-CCccccC-CCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR-RAFKSRA-SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~-~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
++|+++|++|+|||||++++.+. ..+.... ...+.................+.+|||||. ..+....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------~~~~~~~ 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ-----------ELYSDMV 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH-----------HHHHHHH
Confidence 48999999999999999999854 2222221 111111111111121123468999999996 3333445
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+..+|++++|+|++++.+... ..++..+.... ...|+++|+||.|...
T Consensus 70 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 556678899999999985544332 23333333321 2368999999999864
No 60
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.63 E-value=3.9e-14 Score=113.01 Aligned_cols=125 Identities=18% Similarity=0.304 Sum_probs=79.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
+..++|+++|.+|+|||||+|+|++...........+.|....... .+..+.+|||||+........ ....+...
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~-~~~~~~~~ 96 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKE-EKEKWQKL 96 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCch-HHHHHHHH
Confidence 3458999999999999999999998652111122233443333222 246899999999865433221 12233333
Q ss_pred HHhhc---CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAK---DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~---~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+..++ ...+++++|+|.+.+.+..+..+.+++.. .+ .|+++++||+|.+.
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~----~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YG----IPVLIVLTKADKLK 149 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cC----CcEEEEEECcccCC
Confidence 32222 34578888888877777766666666543 22 47899999999986
No 61
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.63 E-value=1.5e-14 Score=113.28 Aligned_cols=126 Identities=15% Similarity=0.191 Sum_probs=79.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
....+|+++|++|+|||||+++|++...... ..|.......+. ..+..+.+|||||... +...
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~-----~~t~g~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~~ 74 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTI-----SPTLGFQIKTLE-YEGYKLNIWDVGGQKT-----------LRPY 74 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEE-ECCEEEEEEECCCCHH-----------HHHH
Confidence 4458999999999999999999998743211 112222222233 2567899999999742 3344
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCC-hhhHHHHH
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN-DETLEDYL 161 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~~~-~~~~~~~~ 161 (253)
...++.++|++++|+|++++-+... ...++...+.. ....|+++|+||+|..... ...+.+++
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 140 (173)
T cd04154 75 WRNYFESTDALIWVVDSSDRLRLDD--CKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREAL 140 (173)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHh
Confidence 4556788899999999985533322 12222222211 1246899999999986421 23444444
No 62
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.62 E-value=1.4e-14 Score=114.53 Aligned_cols=116 Identities=16% Similarity=0.079 Sum_probs=78.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeee-eeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
+...+|+++|.+|+|||||++.+++........ .|....+. .+.. .....+.+|||+|.. ++.
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~----pT~~~~~~~~~~~~~~~~~l~iwDtaG~e-----------~~~ 67 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV----PTVFENYTASFEIDTQRIELSLWDTSGSP-----------YYD 67 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccC----CceeeeeEEEEEECCEEEEEEEEECCCch-----------hhH
Confidence 345899999999999999999998765422211 12211111 1111 123478899999973 233
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
.....++.++|++|+|+|++++.+... ..++..+....+ ..|++||.||.|+.
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~ 122 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 122 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhh
Confidence 445567789999999999997766555 355566655432 35899999999974
No 63
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=6e-15 Score=117.42 Aligned_cols=116 Identities=19% Similarity=0.188 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
+|+++|.+|+|||||++.+++.........+.+.. . ..... ..+ ..+.+|||||... +.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~--~-~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS--Y-RKQVV-VDGQPCMLEVLDTAGQEE-----------YTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh--E-EEEEE-ECCEEEEEEEEECCCchh-----------hHHHHH
Confidence 58999999999999999998654322111111111 1 11111 233 3588999999743 233444
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~-~~~~~~ivv~~k~D~~~ 151 (253)
.++.++|++|+|+|+++..+... ..++..+...... ....|+++|+||+|...
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 56678899999999986554443 4445555544321 13468999999999863
No 64
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=1.3e-14 Score=127.02 Aligned_cols=125 Identities=19% Similarity=0.182 Sum_probs=79.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
-|+|||.++||||||+|+|++... .. ......|.......+...++..++++||||+....+....+...+.+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~v-s~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~---- 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KV-ADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH---- 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cc-cCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH----
Confidence 799999999999999999998764 11 222334555555544443356799999999986443322233333333
Q ss_pred cCCccEEEEEEeCCCC--CCH--HHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSR--FSQ--EEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~--~~~--~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+|++++|+|++.. .++ ....+++.+......-...|.++|+||+|...
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 3566899999998611 111 12444455544321112368999999999875
No 65
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.62 E-value=9.3e-15 Score=112.87 Aligned_cols=116 Identities=22% Similarity=0.145 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+|+++|.+|+|||||++.+++......... ..........+.. .....+.+|||||.. .+...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~ 67 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKK--TIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE-----------EFDAI 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--cEEEEEEEEEEEEcCCCCEEEEEEeeCCchH-----------HHHHh
Confidence 3799999999999999999998654221111 1111111111111 124578999999963 33344
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+++++|++++|++++++-+... ..++..+.... ...|+++|+||.|...
T Consensus 68 ~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 68 TKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLD 120 (162)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhccc
Confidence 4566788999999999985443332 22333333322 2358999999999875
No 66
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=1.3e-14 Score=115.28 Aligned_cols=117 Identities=20% Similarity=0.203 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.+|+++|.+|+|||||++.+++.........+.+.. .....+.. .....+.+|||||.. .+.....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~Dt~g~~-----------~~~~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVD--FKIKTVYIENKIIKLQIWDTNGQE-----------RFRSLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeE--EEEEEEEECCEEEEEEEEECCCcH-----------HHHhhHH
Confidence 489999999999999999999876532111121211 21122221 113467899999963 2333445
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+.++|++|+|+|++++.+... ..++..+....+. ..|+++|+||.|...
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVN 119 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCcc
Confidence 66788999999999985544333 3344444443322 258999999999874
No 67
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.62 E-value=6.9e-15 Score=114.57 Aligned_cols=147 Identities=18% Similarity=0.096 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+|+++|++|||||||+++++....... ...|.......... .....+.+|||||...+. ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~ 65 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG-----------GL 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc-----------cc
Confidence 4899999999999999999986543211 11222222222111 123578899999985432 12
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC-hhhHHHHHcccCCchhhhhHH
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGRECPKPLKKGAT 174 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~-~~~~~~~~~~~~~~~l~~~~~ 174 (253)
....+.++|++|+|+|++++.+... ..++..+.+..+ ..|+++|+||+|..... ......+.......+++.+..
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~ 142 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAK 142 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCC
Confidence 2334578899999999985544433 334455555433 46899999999986311 111222332223334444444
Q ss_pred HhhhHHHHHH
Q 025391 175 KLRDQQFEVD 184 (253)
Q Consensus 175 ~~~~~~~~~~ 184 (253)
....++.+++
T Consensus 143 ~~~~v~~~f~ 152 (166)
T cd00877 143 SNYNFEKPFL 152 (166)
T ss_pred CCCChHHHHH
Confidence 4445554444
No 68
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.62 E-value=9.8e-15 Score=118.81 Aligned_cols=151 Identities=13% Similarity=0.023 Sum_probs=89.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
.+..+|++||.+|+|||||++.++..........+.+.+... ..+.. .....+.+|||||...+ ..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 77 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKF-----------GG 77 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEE--EEEEECCeEEEEEEEECCCchhh-----------hh
Confidence 556899999999999999999987654322111122222211 11111 12458899999997542 23
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC--hhhHHHHHcccCCchhhhh
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKG 172 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~--~~~~~~~~~~~~~~~l~~~ 172 (253)
....++.++|++|+|+|++++.+... ..++..+.+.. ...|+++|+||+|..... ...+ .+.......+++.+
T Consensus 78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~S 153 (219)
T PLN03071 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEIS 153 (219)
T ss_pred hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcC
Confidence 34456788899999999986655544 34444454432 235899999999985311 1122 33322223344554
Q ss_pred HHHhhhHHHHHH
Q 025391 173 ATKLRDQQFEVD 184 (253)
Q Consensus 173 ~~~~~~~~~~~~ 184 (253)
......+.+++.
T Consensus 154 Ak~~~~i~~~f~ 165 (219)
T PLN03071 154 AKSNYNFEKPFL 165 (219)
T ss_pred CCCCCCHHHHHH
Confidence 444445554443
No 69
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.61 E-value=2.4e-14 Score=112.19 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=76.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+|+++|..|+|||||++.+.+........ .|....+......++ ..+.+|||||... +...
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~l 66 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHD----PTIEDAYKQQARIDNEPALLDILDTAGQAE-----------FTAM 66 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcC----CcccceEEEEEEECCEEEEEEEEeCCCchh-----------hHHH
Confidence 3699999999999999999998765432211 111111111111233 4688999999743 3344
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++.++|++++|+|++++.+... ..+...+.... .....|+++|.||+|...
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLES 121 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhhh
Confidence 5566678899999999987777665 33444454432 122468999999999753
No 70
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.61 E-value=1.6e-14 Score=112.75 Aligned_cols=119 Identities=15% Similarity=0.099 Sum_probs=74.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHH-HH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIV-KC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~-~~ 96 (253)
..+|+++|++|+|||||++++++.......... .........+.. .....+.+|||||... +. ..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~ 68 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEAT--IGVDFRERTVEIDGERIKVQLWDTAGQER-----------FRKSM 68 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccc--eeEEEEEEEEEECCeEEEEEEEeCCChHH-----------HHHhh
Confidence 479999999999999999999876542221111 111111112221 1235788999999642 22 23
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++++|+|++++-+... ..++..+.... .....|+++|.||.|...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS-LPNEVPRILVGNKCDLRE 123 (170)
T ss_pred HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc-CCCCCCEEEEEECccchh
Confidence 4556688899999999986555444 33333444332 122368999999999864
No 71
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.61 E-value=1.6e-14 Score=112.21 Aligned_cols=117 Identities=14% Similarity=0.068 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcccc--CCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
+|+++|++|+|||||++.|++......+ ......|.......+. ..+..+.+|||||... +.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIE-VGNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEE-ECCEEEEEEECCCChh-----------hHHHHH
Confidence 5899999999999999999875432111 1122234344444444 3578999999999843 334445
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
..+.++|++++|+|+++..+... ...++...+.. ....|+++++||+|...
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEE--SKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHH--HHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 56788899999999874332222 22333333221 12358999999999865
No 72
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.61 E-value=1.8e-14 Score=110.95 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.+|+++|++|+|||||+|++++......... ..+.......... .....+.+|||||... +.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHES--TTQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCC--ccceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhH
Confidence 4899999999999999999998765322111 1111111111211 1234688999999632 223334
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++..+|++++|+|+++.-+... ..++..+...... ..|+++|+||+|...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~ 119 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER 119 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 45578899999999875544333 3334444444332 358999999999874
No 73
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=1.9e-14 Score=113.37 Aligned_cols=114 Identities=15% Similarity=0.060 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeee-eeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|.+|+|||||++.+++........ .|....+. .+.. .....+.+|||||... +....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~----~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~-----------~~~~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYV----PTVFENYTASFEIDEQRIELSLWDTSGSPY-----------YDNVR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcC----CceEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhcc
Confidence 689999999999999999999875422211 12211111 1111 1235688999999743 22334
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+++++|++|+|+|++++-+... ..++..+.+..+ ..|+++|.||.|+..
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~ 119 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRT 119 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhc
Confidence 456789999999999987766655 345556655432 358999999999753
No 74
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.61 E-value=3.4e-14 Score=127.13 Aligned_cols=127 Identities=22% Similarity=0.224 Sum_probs=87.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
...+|+++|++|+|||||+|+|+|......+. ..+.|......... .++..+.+|||||+.....-.+..........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~-~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFE-RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEE-ECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 45899999999999999999999987543332 23444444333333 46788999999998654332221111111111
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+...+|++|+|+|++.+.+..+..++..+.+. + .|+++|+||+|...
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-G----RALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCCC
Confidence 2344677999999999988998888777666543 3 47999999999984
No 75
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.61 E-value=1.1e-14 Score=116.56 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCcc---ceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV---TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
++|+++|++|+|||||+|+|+|...+..+..+.+. +..... +.......+.+|||||+.+.....+ ++..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~----~~l~- 74 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPD----DYLE- 74 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHH----HHHH-
Confidence 68999999999999999999996544333222221 222111 1111245789999999976543322 2211
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+.+.|++|+|.+ .+++..+..+++.+... + .++++|+||+|...
T Consensus 75 -~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~ 121 (197)
T cd04104 75 -EMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDL 121 (197)
T ss_pred -HhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchh
Confidence 123467788888854 47898898888888775 4 37899999999975
No 76
>PLN03118 Rab family protein; Provisional
Probab=99.61 E-value=2e-14 Score=116.33 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=75.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee-CCeEEEEEeCCCCCCCCCCcHHHHHH
Q 025391 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKE 92 (253)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~ 92 (253)
+......+|+|+|++|+|||||+++|++...... ..+.+ .......+... ....+.+|||||...
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t~~--~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------- 74 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIG--VDFKIKQLTVGGKRLKLTIWDTAGQER----------- 74 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCCce--eEEEEEEEEECCEEEEEEEEECCCchh-----------
Confidence 3344558999999999999999999998754211 11111 11111222211 134788999999743
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHHHH--HHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA--ALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~--~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+......++..+|++|+|+|++++.+..... +...+.. +......|+++|+||.|...
T Consensus 75 ~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 75 FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccc
Confidence 2233445567889999999998554444321 2222322 22222347899999999864
No 77
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.61 E-value=3.3e-14 Score=119.94 Aligned_cols=136 Identities=25% Similarity=0.352 Sum_probs=92.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc----CCC--CccceeeeeeeeEee-CC--eEEEEEeCCCCCCCCCCcH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASS--SGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSE 87 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~----~~~--~~~t~~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~~~ 87 (253)
+-.++|++||++|.|||||+|+|++....... ..+ ...+........... ++ .+++|+||||++|+-.. .
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s 99 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-S 99 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-c
Confidence 45689999999999999999999998543221 111 112332333222221 22 37899999999986533 4
Q ss_pred HHHHHHHHHHHhhc------------------CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 88 FVGKEIVKCIGMAK------------------DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 88 ~~~~~~~~~~~~~~------------------~~~~~~l~v~d~~-~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
..+..+...+...+ .++|++||++.++ +.+++.+..+++.+.+. .++|+|+.|+|
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD 173 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKAD 173 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeeccc
Confidence 44544444432211 5679999999874 57999999998888775 37999999999
Q ss_pred CCCCChhhHHHHH
Q 025391 149 ELEDNDETLEDYL 161 (253)
Q Consensus 149 ~~~~~~~~~~~~~ 161 (253)
.+. ...+..|-
T Consensus 174 ~lT--~~El~~~K 184 (373)
T COG5019 174 TLT--DDELAEFK 184 (373)
T ss_pred cCC--HHHHHHHH
Confidence 998 55444443
No 78
>PLN03110 Rab GTPase; Provisional
Probab=99.61 E-value=2.3e-14 Score=116.38 Aligned_cols=119 Identities=17% Similarity=0.141 Sum_probs=77.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...+|+++|++|+|||||++.+++.........+.+..... ..+.. .....+.+|||||. .++...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~--~~v~~~~~~~~l~l~Dt~G~-----------~~~~~~ 77 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFAT--RTLQVEGKTVKAQIWDTAGQ-----------ERYRAI 77 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEE--EEEEECCEEEEEEEEECCCc-----------HHHHHH
Confidence 44899999999999999999999876432222222222111 22221 12347889999996 334455
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++.+++++|+|+|+++..+... ..++..+....+ ...|+++|+||+|...
T Consensus 78 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 78 TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNH 131 (216)
T ss_pred HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhccc
Confidence 5666788999999999985544433 334444444332 2358999999999753
No 79
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.61 E-value=2.2e-14 Score=113.34 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=79.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCC--------------CCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCc
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 86 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 86 (253)
+|+++|.+|+|||||+|+|++......... ..+.+......... ..+..+.+|||||..+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDtpG~~~----- 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE-WPDRRVNFIDTPGHED----- 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe-eCCEEEEEEeCCCcHH-----
Confidence 589999999999999999998865432211 11233333333333 2567899999999753
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+......++..+|++++|+|++...+......+..+.. ...|+++|+||+|...
T Consensus 75 ------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 75 ------FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVG 128 (189)
T ss_pred ------HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcc
Confidence 22333344457799999999987777766666655544 2358999999999985
No 80
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.61 E-value=2e-14 Score=113.91 Aligned_cols=114 Identities=13% Similarity=0.044 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeee-eeEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
++|+++|++|+|||||++++++....... ..|....+. .+... ....+.+|||||... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~----~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEY----VPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCC----CCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence 48999999999999999999987643221 112212111 12211 234688999999632 2334
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....+.++|++|+|+|.+++.+.... .++..+... . ...|+++|+||.|...
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~ 119 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-C--PGTPIMLVGLKTDLRK 119 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C--CCCCEEEEEeChhhhh
Confidence 44566889999999999865554442 233333332 2 2358999999999864
No 81
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.61 E-value=2.1e-14 Score=110.58 Aligned_cols=116 Identities=21% Similarity=0.188 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|++|+|||||+|++++.........+.+... ..... ..+ ..+.+|||||... +....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~---~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY---RKQVV-IDGETCLLDILDTAGQEE-----------YSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE---EEEEE-ECCEEEEEEEEECCCCcc-----------hHHHH
Confidence 6899999999999999999998754222111111111 11111 233 3577899999743 22344
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++.++|++++|++++++-+..+ ..++..+.+... ....|+++|+||.|...
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 456677899999999985443333 223344444321 22458999999999864
No 82
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.61 E-value=1.4e-14 Score=112.16 Aligned_cols=116 Identities=19% Similarity=0.140 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|++|+|||||++++++........ +.... ....... .. ...+.+|||||..... ...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~-~t~~~--~~~~~~~-~~~~~~~l~i~Dt~g~~~~~-----------~~~ 65 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYD-PTIED--SYRKQIE-IDGEVCLLDILDTAGQEEFS-----------AMR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccC-Cchhh--hEEEEEE-ECCEEEEEEEEECCCcccch-----------HHH
Confidence 389999999999999999999875422211 11111 1111111 23 3467899999986432 233
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++...|++++|+|++++-+... ..+...+.+.... ...|+++|.||+|...
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLES 119 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 344567799999999985444333 2333444443221 2358999999999864
No 83
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.61 E-value=2.6e-14 Score=110.71 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|++|+|||||++.+++.........+.+. ......+.. .+ ..+.+|||||... +....
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~~ 66 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGV--DFKMKTIEV-DGIKVRIQIWDTAGQER-----------YQTIT 66 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceee--EEEEEEEEE-CCEEEEEEEEeCCCcHh-----------HHhhH
Confidence 37999999999999999999877543221111111 111112221 23 4678999999643 23444
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++++|+|++++-+... ..++..+..... ...|+++|.||.|...
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 67 KQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQ 119 (161)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 556678899999999986544433 233333333321 2358999999999864
No 84
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.60 E-value=1.7e-14 Score=115.09 Aligned_cols=117 Identities=17% Similarity=0.238 Sum_probs=82.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccc--------------cCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (253)
..+|+++|+.++|||||+++|++...... .....+.|......... .++..++++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~---- 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHA---- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHH----
Confidence 37899999999999999999986411000 01134555555544444 367789999999984
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+..........+|++++|+|+.......+...+..+... |. +++++++||+|...
T Consensus 77 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~~ 132 (195)
T cd01884 77 -------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GV---PYIVVFLNKADMVD 132 (195)
T ss_pred -------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCCC
Confidence 2333334445678999999999877888888888776653 42 24789999999974
No 85
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=8.9e-15 Score=118.88 Aligned_cols=126 Identities=24% Similarity=0.216 Sum_probs=86.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+.+|.|+|.+|+|||||+|+|++....... ..+.+.....+.....++..+++|||||+.+....+ +++++.
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~--~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D----~~~r~~ 110 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVS--KVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD----AEHRQL 110 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceee--ecccCCCchhhHHhhccccceEEecCCCcccchhhh----HHHHHH
Confidence 34578889999999999999999965432222 122222222222333467889999999998744322 456677
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+....+..|.+|+++++.++.=.-+..+++.+.-... ..++++++|.+|...
T Consensus 111 ~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~---~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGL---DKRVLFVVTQADRAE 162 (296)
T ss_pred HHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhcc---CceeEEEEehhhhhc
Confidence 7777788899999999987755555556655544322 258999999999987
No 86
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=2.6e-14 Score=115.67 Aligned_cols=119 Identities=17% Similarity=0.087 Sum_probs=74.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+|+++|++|+|||||++.+++......... ..........+.... ...+.+|||||.. .+...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~--ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~-----------~~~~~ 68 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDP--TVGVDFFSRLIEIEPGVRIKLQLWDTAGQE-----------RFRSI 68 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCc--eeceEEEEEEEEECCCCEEEEEEEeCCcch-----------hHHHH
Confidence 37999999999999999999998764322211 111111111122112 3478899999963 23334
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++++|+|++++-+... ..++..+..... ....+++||.||.|...
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLES 123 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEcccccc
Confidence 4556678899999999986544333 333444433322 12346889999999864
No 87
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.60 E-value=1.5e-14 Score=113.15 Aligned_cols=121 Identities=19% Similarity=0.110 Sum_probs=72.8
Q ss_pred EEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcC
Q 025391 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD 102 (253)
Q Consensus 24 lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (253)
|+|++|||||||+|+|++.... .. ...+.|..+...... .. +..+.+|||||+.+.....+.....+ ...+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-~~-~~~~~t~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~----~~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-VA-NYPFTTLEPNLGVVE-VPDGARIQVADIPGLIEGASEGRGLGNQF----LAHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-cc-CCCceeecCcceEEE-cCCCCeEEEEeccccchhhhcCCCccHHH----HHHHh
Confidence 5899999999999999998641 11 122334444444333 35 78899999999864322222111222 22335
Q ss_pred CccEEEEEEeCCCCC-----CHH-H-HHHHHHHHHHhcc-----cccCeEEEEEeCCCCCC
Q 025391 103 GIHAVLVVFSVRSRF-----SQE-E-EAALHSLQTLFGK-----KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 103 ~~~~~l~v~d~~~~~-----~~~-~-~~~l~~l~~~~g~-----~~~~~~ivv~~k~D~~~ 151 (253)
++|++++|+|+++.. +.. + ..+...+...... ....|+++|+||+|...
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 679999999998553 222 2 2233333322110 12368999999999986
No 88
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.60 E-value=4.8e-14 Score=125.92 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=86.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
...+|+++|.+|+|||||+|+|+|........ ..+.|.......+. ..+..+.+|||||+.....-.+..........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~-~~gtt~~~~~~~~~-~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSD-IAGTTRDSIDIPFE-RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCC-CCCceECcEeEEEE-ECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 34799999999999999999999986432222 23344443333333 36778999999998764432221111111111
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
..++..+|++|+|+|++++.+..+..++..+.+. + .|+++|+||+|..
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA-G----KALVIVVNKWDLV 296 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-C----CcEEEEEECcccC
Confidence 2345678999999999988998887777665542 2 4799999999998
No 89
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.60 E-value=2.4e-14 Score=111.58 Aligned_cols=119 Identities=15% Similarity=0.102 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
++|+++|++|+|||||+|++++...........+... ........ ....+.+|||||... +.....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF--LTKEVTVDDKLVTLQIWDTAGQER-----------FQSLGV 67 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEE--EEEEEEECCEEEEEEEEeCCChHH-----------HHhHHH
Confidence 4899999999999999999998764222211111111 11112211 124577999999743 223344
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
.++.++|++|+|+|++++.+... ..+...+...... ....|+++|+||.|...
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 55678899999999985544332 1222222222221 12468999999999983
No 90
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=6.5e-14 Score=107.05 Aligned_cols=154 Identities=15% Similarity=0.104 Sum_probs=107.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+.++++++|.+|+|||+|+...+.....+....+.++..-.....+. .+..++.+|||.|+ +.++...
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id-~k~IKlqiwDtaGq-----------e~frsv~ 72 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID-GKQIKLQIWDTAGQ-----------ESFRSVT 72 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-CceEEEEEEecCCc-----------HHHHHHH
Confidence 45899999999999999999999877644444444443333333333 24568999999998 5566777
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC---ChhhHHHHHcccCCchhhhhH
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKKGA 173 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~---~~~~~~~~~~~~~~~~l~~~~ 173 (253)
..++.++.++|+|.|++.+-+... ..+|.-++.....+ ..++++.||+|+-.. ..+.-+.|-+...--+.+++.
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSa 150 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSA 150 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhh
Confidence 888899999999999996655544 44555555543233 468899999998732 245666777755555566777
Q ss_pred HHhhhHHHHHHH
Q 025391 174 TKLRDQQFEVDS 185 (253)
Q Consensus 174 ~~~~~~~~~~~~ 185 (253)
+..+.+++++.+
T Consensus 151 kt~~~VEEaF~n 162 (216)
T KOG0098|consen 151 KTAENVEEAFIN 162 (216)
T ss_pred hhhhhHHHHHHH
Confidence 777777777653
No 91
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=3.4e-14 Score=125.19 Aligned_cols=124 Identities=20% Similarity=0.175 Sum_probs=80.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
.|+|||.++||||||+|+|++...- . ......|.......+....+..++++||||+....+....+...+.+.+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k-I-a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--- 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK-I-ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--- 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc-c-ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence 8999999999999999999987632 1 1223445555555555433778999999999753332222333333333
Q ss_pred cCCccEEEEEEeCCCC--CCH-HH-HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 101 KDGIHAVLVVFSVRSR--FSQ-EE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~--~~~-~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
.+++++|+|+|+++. .++ .+ ..+.+.+..+......+|.+||+||+|..
T Consensus 235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 455899999999732 122 22 34445555432222347899999999964
No 92
>PTZ00369 Ras-like protein; Provisional
Probab=99.60 E-value=4.2e-14 Score=112.49 Aligned_cols=120 Identities=22% Similarity=0.153 Sum_probs=74.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+..+|+++|.+|+|||||++++++.........+.+.+. .....+. .....+.+|||||..++. ...
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~-----------~l~ 70 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVID-EETCLLDILDTAGQEEYS-----------AMR 70 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEEC-CEEEEEEEEeCCCCccch-----------hhH
Confidence 348999999999999999999997654222111111111 1111111 123467889999986532 334
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++.+.|++++|+|++++-+... ..+...+.+... ....|+++|.||.|...
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDS 124 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 455678899999999986554333 334444444322 12358999999999753
No 93
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.60 E-value=3.9e-14 Score=110.58 Aligned_cols=126 Identities=16% Similarity=0.178 Sum_probs=80.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+..+|+++|.+|+|||||++.|....... .. .|......... .....+.+|||||.. .+....
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~----~t~g~~~~~~~-~~~~~~~l~Dt~G~~-----------~~~~~~ 70 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TI----PTVGFNVETVT-YKNVKFNVWDVGGQD-----------KIRPLW 70 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-cc----CCcccceEEEE-ECCEEEEEEECCCCH-----------HHHHHH
Confidence 34799999999999999999998654321 11 12222222233 356789999999973 233445
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCC-ChhhHHHHHc
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED-NDETLEDYLG 162 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~~-~~~~~~~~~~ 162 (253)
..++.++|++|+|+|++++.+... ..+++.+.+... ...|++||+||+|.... ....+.+++.
T Consensus 71 ~~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~ 136 (168)
T cd04149 71 RHYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLG 136 (168)
T ss_pred HHHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcC
Confidence 566788999999999986544332 233343333221 23589999999998631 1344555543
No 94
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.60 E-value=8.9e-15 Score=126.73 Aligned_cols=137 Identities=22% Similarity=0.306 Sum_probs=96.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHH-HHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG-KEIVKC 96 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~-~~~~~~ 96 (253)
...+|+|||.+++|||||+|+|+|+.....+. ..|.|...-..... ++++.+.++||+|+-....-.+.+. ....+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e-~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFE-RDGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEE-ECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 45899999999999999999999998755443 33455555444444 5899999999999964332212110 011111
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHc
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~ 162 (253)
+ .+...++++++|+|++.+++..+...+..+.+. | ++++||+||||.+..+....+++..
T Consensus 255 ~-~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g----~~~vIvvNKWDl~~~~~~~~~~~k~ 314 (444)
T COG1160 255 L-KAIERADVVLLVIDATEGISEQDLRIAGLIEEA-G----RGIVIVVNKWDLVEEDEATMEEFKK 314 (444)
T ss_pred H-hHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-C----CCeEEEEEccccCCchhhHHHHHHH
Confidence 1 222456899999999999999999998888775 4 3699999999999743345555543
No 95
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.59 E-value=3.9e-14 Score=109.29 Aligned_cols=116 Identities=15% Similarity=0.079 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
+|+++|.+|+|||||++.|++...+..... .|......... ..+..+.+|||||... +......+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~-~~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFE-KGNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEE-ECCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 589999999999999999998643222111 11111112222 3577899999999743 33444556
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g-~~~~~~~ivv~~k~D~~~ 151 (253)
+.++|++|+|+|++++.+... ...+..+..... .....|+++|+||.|...
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 688999999999985544322 223333322111 012468999999999875
No 96
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.59 E-value=3e-14 Score=115.06 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcccc-----------------------------CCCCccceeeeeeeeEeeCCeEE
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLKDGQVV 71 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (253)
||+|+|++|+|||||++.|++....... ....+.|.......+. +++..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS-TPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe-cCCceE
Confidence 6899999999999999999875432210 0013455555555444 478899
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+|||||+.+ +...+..+...+|++|+|+|++.............+.. ++. +++++|+||+|...
T Consensus 80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGI---RHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCC---CcEEEEEEchhccc
Confidence 9999999732 22223334567899999999987766665554444433 332 35788999999874
No 97
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.1e-14 Score=120.88 Aligned_cols=136 Identities=24% Similarity=0.285 Sum_probs=89.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc-----CCCCccceeeeeeeeEe-eCC--eEEEEEeCCCCCCCCCCcHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-----ASSSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSEFV 89 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-----~~~~~~t~~~~~~~~~~-~~~--~~~~liDtpG~~~~~~~~~~~ 89 (253)
-.++++++|++|.|||||+|+|++....... ......|.......... .+| .+++|+||||++|.-.. ...
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn-s~~ 98 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN-SNC 98 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc-ccc
Confidence 3489999999999999999999988543221 11111122222222221 123 37899999999976533 333
Q ss_pred HHHHHHHHH----hhc-------------CCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 90 GKEIVKCIG----MAK-------------DGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 90 ~~~~~~~~~----~~~-------------~~~~~~l~v~d~~~~-~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++.+...+. .++ .++|++||+++++.+ +++.|..+++.+...+ ++|.|+.|+|.+.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v------NiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV------NLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc------cccceeeccccCC
Confidence 333333322 111 367999999998655 9999999988887653 7999999999998
Q ss_pred CChhhHHHHHc
Q 025391 152 DNDETLEDYLG 162 (253)
Q Consensus 152 ~~~~~~~~~~~ 162 (253)
...+..+..
T Consensus 173 --~~El~~~K~ 181 (366)
T KOG2655|consen 173 --KDELNQFKK 181 (366)
T ss_pred --HHHHHHHHH
Confidence 655544443
No 98
>PLN03108 Rab family protein; Provisional
Probab=99.59 E-value=4.3e-14 Score=114.31 Aligned_cols=119 Identities=16% Similarity=0.114 Sum_probs=74.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+|+|++|+|||||++.|++.........+.+.+.......+. .....+.+|||||.. .+.....
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~-~~~i~l~l~Dt~G~~-----------~~~~~~~ 73 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQE-----------SFRSITR 73 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEEC-CEEEEEEEEeCCCcH-----------HHHHHHH
Confidence 4899999999999999999999875432222222222212111111 112467899999963 2223344
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+.++|++++|+|++++-+... ..++..+..... ...|+++|+||+|...
T Consensus 74 ~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence 55577899999999985444333 233443433322 2358999999999864
No 99
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=5.6e-14 Score=114.90 Aligned_cols=114 Identities=14% Similarity=0.050 Sum_probs=76.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeee-eeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+|++||..|+|||||++.+++........ .|....+. .+.. .....+.+|||||.. .+...
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~----pTi~~~~~~~i~~~~~~v~l~iwDTaG~e-----------~~~~~ 77 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYV----PTVFENYTAGLETEEQRVELSLWDTSGSP-----------YYDNV 77 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcC----CceeeeeEEEEEECCEEEEEEEEeCCCch-----------hhHHH
Confidence 4799999999999999999998765422211 12111111 1111 123578899999973 33344
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
...++.++|++|+|+|++++-+... ..|+..+....+ ..|+++|.||.|+.
T Consensus 78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~ 130 (232)
T cd04174 78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLR 130 (232)
T ss_pred HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence 5567789999999999997666553 345555655432 35899999999974
No 100
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.59 E-value=2.6e-14 Score=110.75 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeee-eeeeEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+|+++|.+|+|||||+++++..... .... .|.... ..... .. ...+.+|||||...+ ...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~-~~~~---~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYD---PTIEDSYRKQVE-VDGQQCMLEILDTAGTEQF-----------TAM 65 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC-cccC---CcchheEEEEEE-ECCEEEEEEEEECCCcccc-----------hhH
Confidence 68999999999999999999855331 1111 111111 11122 23 346679999998532 234
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++.+.|++++|+|.++.-+... ..++..+..... ....|+++|+||+|...
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 120 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence 4456678899999999875544433 334444443321 23468999999999864
No 101
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.59 E-value=6.2e-14 Score=120.39 Aligned_cols=126 Identities=21% Similarity=0.219 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
..|+|||.++||||||+|+|++.... . ......|.......+...++..+.++||||+.+.......+...+.+.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~-v-a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi-- 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK-I-ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI-- 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc-c-cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--
Confidence 46899999999999999999987531 1 1112334445555454433488999999999754433222333333333
Q ss_pred hcCCccEEEEEEeCCCCC--CH-HH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRF--SQ-EE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~--~~-~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+++++|+|+|+++.- ++ .+ ..+.+.+..+...-..+|++||+||+|...
T Consensus 234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 4558999999987431 22 22 333344443311113468999999999975
No 102
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.59 E-value=2.9e-14 Score=113.60 Aligned_cols=114 Identities=20% Similarity=0.212 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeee--eeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
+||+++|.+|+|||||++++++....... ...|....+ ..+. ..+ ..+.+|||||...+ ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~~~~-----------~~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGP---YQNTIGAAFVAKRMV-VGERVVTLGIWDTAGSERY-----------EA 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcC---cccceeeEEEEEEEE-ECCEEEEEEEEECCCchhh-----------hh
Confidence 48999999999999999999986542211 111221111 1122 233 35679999997432 23
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++.++|++++|+|+++.-+... ..++..+... ....|+++|+||+|...
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccc
Confidence 33455678899999999985543332 3344444432 12358999999999764
No 103
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.59 E-value=3.4e-14 Score=111.12 Aligned_cols=115 Identities=19% Similarity=0.107 Sum_probs=72.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeee--eeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+|++||.+|+|||||++++++....... ..|....+ ..+.. .....+.+|||||... +....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNY----KATIGVDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhH
Confidence 7999999999999999999987542221 12222221 11211 1235789999999742 33444
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++.++|++++|+|++++-+... ..++..+.+... +-..|+++|.||.|...
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSS 120 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCc
Confidence 566788999999999975433332 334444333211 11247899999999754
No 104
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.58 E-value=6.2e-14 Score=111.97 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC-CccccC-------------CCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRR-AFKSRA-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~-~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (253)
++|+++|.+|+|||||++.|++.. .+.... ...+.+.......+. .++..+.+|||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT-YKDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE-ECCEEEEEEECCCcHH----
Confidence 689999999999999999998631 111110 112334433333343 3678899999999853
Q ss_pred cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+......++.++|++++|+|+++........++..+.. ...|+++|+||+|...
T Consensus 78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE-----LGLKPIVVINKIDRPD 131 (194)
T ss_pred -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 33444556678899999999986554444444443332 1247999999999864
No 105
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=5.1e-14 Score=109.56 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=73.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+|+++|++|+|||||++.+++......... ..+.......+. ..+ ..+.+|||||... +...
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~-----------~~~~ 72 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGA--TIGVDFMIKTVE-IKGEKIKLQIWDTAGQER-----------FRSI 72 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeEEEEEEEE-ECCEEEEEEEEECCCcHH-----------HHHH
Confidence 38999999999999999999986543222111 111112122222 233 4578899999632 3344
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++++|+|+++..+... ..++..+...... ..|+++|+||.|...
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~~i~v~NK~D~~~ 126 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANN--KVITILVGNKIDLAE 126 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 4556778899999999875433322 2344444443322 257899999999864
No 106
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.58 E-value=6.4e-14 Score=109.18 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
+|+++|.+|||||||++.+.+.. ..... .|.......+. ..+..+.+|||||.. .+......+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~~---~t~g~~~~~~~-~~~~~~~i~D~~G~~-----------~~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKVA---PTVGFTPTKLR-LDKYEVCIFDLGGGA-----------NFRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--Ccccc---CcccceEEEEE-ECCEEEEEEECCCcH-----------HHHHHHHHH
Confidence 48999999999999999999872 22211 12112222333 367889999999963 333445566
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+.++|++++|+|++++.+... ..++..+.... .....|++||+||.|...
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKN 114 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcC
Confidence 788999999999985543332 22333332211 112468999999999865
No 107
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.58 E-value=2.9e-14 Score=110.16 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|.+|||||||++++++.........+.+ ......+. .++ ..+.+|||||...+. ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~---~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQIE-VDGQQCMLEILDTAGTEQFT-----------AMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh---hhEEEEEE-ECCEEEEEEEEECCCccccc-----------hHH
Confidence 6899999999999999999987653221111111 11111122 233 467789999975432 334
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++.++|++++|+|++++-+... ..++..+..... ....|+++|+||+|...
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLED 120 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 455678899999999985544433 334444544322 22468999999999864
No 108
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.58 E-value=1.6e-14 Score=107.72 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=86.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...++|+|||.+|+|||||+-++.....-+..+.+.++......-.+. .+..++.+|||+|. ++++..
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vd-g~~~KlaiWDTAGq-----------ErFRtL 76 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVD-GKRLKLAIWDTAGQ-----------ERFRTL 76 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEc-CceEEEEEEeccch-----------Hhhhcc
Confidence 345899999999999999999988766544444445555555444433 24558899999998 667777
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
.+.+++++.++|+|.|++.+-+... .-|++.+.. +......-.++|.||.|.-
T Consensus 77 TpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~-Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 77 TPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDL-YSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred CHhHhccCceeEEEEEccchhhHHhHHHHHHHHHh-hcCCccHhHhhhcccccch
Confidence 8899999999999999997666554 334444444 3333334567899999975
No 109
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.58 E-value=1.6e-14 Score=114.84 Aligned_cols=116 Identities=22% Similarity=0.332 Sum_probs=84.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc----------------CCCCccceeeeeeeeE-eeCCeEEEEEeCCCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTV-LKDGQVVNVIDTPGLFD 81 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~----------------~~~~~~t~~~~~~~~~-~~~~~~~~liDtpG~~~ 81 (253)
.++|+++|+.|+|||||+++|++....... ....+.|......... ...+..++++||||..+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 479999999999999999999866432110 0112344444444443 24788999999999742
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
+..........+|++|+|+|+...+.......+..+... + .|++||+||+|..
T Consensus 83 -----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-~----~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 83 -----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-G----IPIIVVLNKMDLI 135 (188)
T ss_dssp -----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-T-----SEEEEEETCTSS
T ss_pred -----------eeecccceecccccceeeeeccccccccccccccccccc-c----cceEEeeeeccch
Confidence 334444445778999999999888999888888887664 3 3699999999998
No 110
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.58 E-value=5e-14 Score=112.02 Aligned_cols=127 Identities=23% Similarity=0.283 Sum_probs=89.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCC-----CCccceeeeeeeeEe-eCC--eEEEEEeCCCCCCCCCCcHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-----SSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSEFV 89 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~-~~~--~~~~liDtpG~~~~~~~~~~~ 89 (253)
-.++|++||.+|.|||||+|+|+......++.. +...|+......... .++ .+++++||||+.|. ..++.+
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq-InN~nc 123 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ-INNDNC 123 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc-cCccch
Confidence 348999999999999999999987665443222 222333322222111 233 37889999999874 455666
Q ss_pred HHHHHHHHHhhc------------------CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 90 GKEIVKCIGMAK------------------DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 90 ~~~~~~~~~~~~------------------~~~~~~l~v~d~~-~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
|+.+...+...+ .++|+++|.++++ ..+.+.+.++++.+.+.. +++.|+.|+|.+
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDtl 197 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADTL 197 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeecccc
Confidence 666655553222 4679999999885 568899999999888873 799999999999
Q ss_pred C
Q 025391 151 E 151 (253)
Q Consensus 151 ~ 151 (253)
.
T Consensus 198 T 198 (336)
T KOG1547|consen 198 T 198 (336)
T ss_pred c
Confidence 7
No 111
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.58 E-value=4.3e-14 Score=109.84 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=73.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc
Q 025391 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (253)
Q Consensus 22 i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (253)
|+++|.+|+|||||++.+.+.........+.+. ....+. ..+..+.+|||||...+ ......++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~----~~~~i~-~~~~~l~i~Dt~G~~~~-----------~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGF----NSVAIP-TQDAIMELLEIGGSQNL-----------RKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCc----ceEEEe-eCCeEEEEEECCCCcch-----------hHHHHHHH
Confidence 789999999999999999987542221111121 122233 35778999999997542 23344566
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 102 DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 102 ~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++|++++|+|.+++.+... ...++.+........|+++|.||.|...
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~--~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPL--ARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred hhCCEEEEEEECCCHHHHHH--HHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 78899999999985543322 2233333332223468999999999865
No 112
>PRK11058 GTPase HflX; Provisional
Probab=99.58 E-value=5.8e-14 Score=124.35 Aligned_cols=125 Identities=22% Similarity=0.139 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
++|+|+|.+|||||||+|.|++...+.. ...+.|.......+.......+.+|||||+.... .......+...+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l--p~~lve~f~~tl~- 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRHL--PHDLVAAFKATLQ- 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCcccccC--CHHHHHHHHHHHH-
Confidence 6899999999999999999999875422 1223344444444443344588999999985421 1222333444333
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~-l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....+|++|+|+|++++.+...... ..++... +. ...|+++|+||+|...
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DA-HEIPTLLVMNKIDMLD 323 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCCC
Confidence 3468899999999986655444332 3334433 32 1358999999999875
No 113
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=7.4e-14 Score=102.92 Aligned_cols=151 Identities=16% Similarity=0.137 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
++|+|||..|+|||.|++.++....+++...+.++........+. ....++.+|||+|. ++++.....
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~-gekiklqiwdtagq-----------erfrsitqs 75 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVN-GEKIKLQIWDTAGQ-----------ERFRSITQS 75 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEEC-CeEEEEEEeeccch-----------HHHHHHHHH
Confidence 799999999999999999998776655554444544444333332 23457899999997 667777788
Q ss_pred hcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC---hhhHHHHHcccCCchhhhhHHH
Q 025391 100 AKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGATK 175 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~-~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~---~~~~~~~~~~~~~~~l~~~~~~ 175 (253)
+++.+|++|+|.|++...+.. -..|++.+..+....+ -.++|.||.|..+.. ...-++|......-+|+++..+
T Consensus 76 yyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~drrevp~qigeefs~~qdmyfletsake 153 (213)
T KOG0095|consen 76 YYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKE 153 (213)
T ss_pred HhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccc
Confidence 889999999999997544433 2667777777654443 578999999987521 1122444443344445555555
Q ss_pred hhhHHHHHH
Q 025391 176 LRDQQFEVD 184 (253)
Q Consensus 176 ~~~~~~~~~ 184 (253)
....++++.
T Consensus 154 a~nve~lf~ 162 (213)
T KOG0095|consen 154 ADNVEKLFL 162 (213)
T ss_pred hhhHHHHHH
Confidence 555555554
No 114
>PRK04213 GTP-binding protein; Provisional
Probab=99.57 E-value=1.2e-13 Score=110.72 Aligned_cols=123 Identities=22% Similarity=0.195 Sum_probs=75.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...++|+++|.+|+|||||+|+|+|... ..+. ..+.|..... .. ...+.+|||||+.............+...
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~-~~~~t~~~~~--~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RVGK-RPGVTRKPNH--YD---WGDFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCC-CCceeeCceE--Ee---ecceEEEeCCccccccccCHHHHHHHHHH
Confidence 4458999999999999999999998763 2222 2233433222 22 12689999999865443333223334333
Q ss_pred H----HhhcCCccEEEEEEeCCCCCCH-----------HHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 I----GMAKDGIHAVLVVFSVRSRFSQ-----------EEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~----~~~~~~~~~~l~v~d~~~~~~~-----------~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+ ......++++++|+|+++.... .+..++..+.. . ..|+++|+||+|...
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~----~~p~iiv~NK~Dl~~ 144 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-L----GIPPIVAVNKMDKIK 144 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-c----CCCeEEEEECccccC
Confidence 2 2233456899999988643221 22333343332 1 258999999999865
No 115
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.57 E-value=5.1e-14 Score=111.36 Aligned_cols=115 Identities=14% Similarity=0.106 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
++|+++|.+|+|||||++++++.........+.+..... ..+. .++ ..+.+|||+|... +....
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~--~~i~-~~~~~~~l~iwDt~G~~~-----------~~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFME--KTIS-IRGTEITFSIWDLGGQRE-----------FINML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEE--EEEE-ECCEEEEEEEEeCCCchh-----------HHHhh
Confidence 489999999999999999998765422111111111111 1222 133 5788999999743 33455
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+++++|++++|+|++++.+..+ ..++..+....+. ..| ++|+||+|...
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~--~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT--AIP-ILVGTKYDLFA 118 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCE-EEEEEchhccc
Confidence 567789999999999986655544 3444444443221 235 67899999863
No 116
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.57 E-value=6.3e-14 Score=124.77 Aligned_cols=123 Identities=19% Similarity=0.156 Sum_probs=81.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+..+|+|+|++|+|||||+|.|++........ ..+.|.......+. .++..+.+|||||+.++....+. ..+.. .
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~-~pgtTrd~~~~~i~-~~g~~v~l~DTaG~~~~~~~ie~--~gi~~-~ 276 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSD-IKGTTRDVVEGDFE-LNGILIKLLDTAGIREHADFVER--LGIEK-S 276 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcEEEEEEEEEE-ECCEEEEEeeCCCcccchhHHHH--HHHHH-H
Confidence 45899999999999999999999975422222 23444444444444 47888999999999754321111 11111 2
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++|+|+|++++.+..+. ++..+.. ...|+++|+||.|...
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-----SKKPFILVLNKIDLKI 324 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-----CCCCEEEEEECccCCC
Confidence 2345678999999999877776554 3333321 1248999999999864
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.57 E-value=5.3e-14 Score=108.47 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
+|+++|++|+|||||++.+++...... . .|.......+.......+.+|||||... +.......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-I----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-c----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 589999999999999999998765322 1 1221222223323456899999999742 33344455
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~ 151 (253)
+..+|++++|+|+++..+... ...++...+... ...|+++|+||+|...
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDE--SQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred hccCCEEEEEEECCcHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 678899999999975443222 222233222111 2368999999999854
No 118
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.57 E-value=9.2e-14 Score=110.39 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
....+|+++|++|+|||||+++|.+...... ..|.......+. ..+..+.+|||||... ....
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~-~~~~~~~l~D~~G~~~-----------~~~~ 79 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELT-IGNIKFKTFDLGGHEQ-----------ARRL 79 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEE-ECCEEEEEEECCCCHH-----------HHHH
Confidence 4458999999999999999999998654211 112222222333 3577899999999632 2233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCC-ChhhHHHHHc
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELED-NDETLEDYLG 162 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~~-~~~~~~~~~~ 162 (253)
...+++++|++++|+|.++.-+... ...++...++. ....|+++++||.|.... ....+.+++.
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~~--~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~ 146 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQE--SKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALG 146 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHH--HHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhC
Confidence 4455678899999999874422221 22333333321 133689999999998631 2345555554
No 119
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.57 E-value=6e-14 Score=109.39 Aligned_cols=154 Identities=15% Similarity=0.062 Sum_probs=88.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...+|+++|++|+|||||++.+++...........+. ......+.. .....+.+|||||.. ++...
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~D~~G~~-----------~~~~~ 70 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV--EFLNKDLEVDGHFVTLQIWDTAGQE-----------RFRSL 70 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceee--EEEEEEEEECCeEEEEEEEeCCChH-----------HHHHh
Confidence 3489999999999999999999876543222111111 111111211 123467889999963 33445
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCCCC--ChhhHHHHHcccC-Cchhh
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELED--NDETLEDYLGREC-PKPLK 170 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~~--~~~~~~~~~~~~~-~~~l~ 170 (253)
...++.++|++++|++++++-+... ..+...+...... ....|+++|.||.|.... ....+.++..... ..++.
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 150 (170)
T cd04116 71 RTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFE 150 (170)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEE
Confidence 5566788899999999985544333 2333333333221 123589999999998531 1234445554322 23444
Q ss_pred hhHHHhhhHHHHHH
Q 025391 171 KGATKLRDQQFEVD 184 (253)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (253)
.+.....++..++.
T Consensus 151 ~Sa~~~~~v~~~~~ 164 (170)
T cd04116 151 TSAKDATNVAAAFE 164 (170)
T ss_pred EECCCCCCHHHHHH
Confidence 44444444444443
No 120
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=3.2e-13 Score=121.77 Aligned_cols=126 Identities=19% Similarity=0.199 Sum_probs=84.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
...+|+++|.+|+|||||+|+|++........ ..+.|.......+. .++..+.+|||||+........ ....+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~-~~gtT~d~~~~~~~-~~~~~~~l~DTaG~~~~~~~~~-~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDD-VAGTTVDPVDSLIE-LGGKTWRFVDTAGLRRRVKQAS-GHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCccCCcceEEEE-ECCEEEEEEECCCccccccccc-hHHHHHHHH
Confidence 45899999999999999999999986532222 23344433333333 3677889999999853221110 011222111
Q ss_pred -HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 -GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 -~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++.++|++++|+|++++.+..+..++..+... ..|++||+||+|+..
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~-----~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA-----GRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 2345788999999999988888887666655442 258999999999975
No 121
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.57 E-value=7.8e-14 Score=111.84 Aligned_cols=121 Identities=15% Similarity=0.118 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe----eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
.+|+++|.+|+|||||++.+++.........+.+............ .....+.+|||+|... +..
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-----------~~~ 69 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES-----------VKS 69 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh-----------HHH
Confidence 3799999999999999999998764332222222222111111110 1234688999999843 345
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-----------------ccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-----------------KKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g-----------------~~~~~~~ivv~~k~D~~~ 151 (253)
....++.++|++|+|+|++++-+... ..|+..+....+ .....|++||.||.|+..
T Consensus 70 l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 70 TRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 55667889999999999997766554 344454543211 012369999999999875
No 122
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2e-14 Score=110.58 Aligned_cols=153 Identities=19% Similarity=0.131 Sum_probs=102.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
...+|+|+|.+|+|||||+-+...........++.+.........+.. ....+.+|||+|.. ++....
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~-~~ikfeIWDTAGQE-----------Ry~sla 71 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD-NTIKFEIWDTAGQE-----------RYHSLA 71 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC-cEEEEEEEEcCCcc-----------cccccc
Confidence 348999999999999999988766554333344444444443333321 34678899999985 344667
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC---hhhHHHHHcccCCchhhhhH
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA 173 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~---~~~~~~~~~~~~~~~l~~~~ 173 (253)
+.++++++++|+|+|+++.-|... +.+++.|.+..+.+ ..+.+|.||+|+...- -+....|-....--+++++.
T Consensus 72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSA 149 (200)
T KOG0092|consen 72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSA 149 (200)
T ss_pred cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEec
Confidence 889999999999999995544443 66666666654422 3455799999998621 24556666654455556666
Q ss_pred HHhhhHHHHHH
Q 025391 174 TKLRDQQFEVD 184 (253)
Q Consensus 174 ~~~~~~~~~~~ 184 (253)
+...++..++.
T Consensus 150 KTg~Nv~~if~ 160 (200)
T KOG0092|consen 150 KTGENVNEIFQ 160 (200)
T ss_pred ccccCHHHHHH
Confidence 66666655554
No 123
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.56 E-value=1.5e-13 Score=107.40 Aligned_cols=117 Identities=18% Similarity=0.120 Sum_probs=74.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+..+|+++|++|+|||||++.|.+....... .|.......+. ..+..+.+|||||.. .+...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~-----~t~g~~~~~i~-~~~~~~~~~D~~G~~-----------~~~~~ 74 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHIT-----PTQGFNIKTVQ-SDGFKLNVWDIGGQR-----------AIRPY 74 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccC-----CCCCcceEEEE-ECCEEEEEEECCCCH-----------HHHHH
Confidence 34689999999999999999999987542211 11112222233 357889999999973 33345
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+..++.++|++++|+|+++.-+... ...+..+.+.. .....|+++++||+|...
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLAT 129 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCcc
Confidence 5556678899999999874322221 11222221111 012358999999999875
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.56 E-value=9.1e-14 Score=106.99 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
+|+++|.+|+|||||++++++... ... ..|......... ..+..+.+|||||... +......+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~----~~t~~~~~~~~~-~~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTT----IPTIGFNVETVE-YKNVSFTVWDVGGQDK-----------IRPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCC----CCCcCcceEEEE-ECCEEEEEEECCCChh-----------hHHHHHHH
Confidence 589999999999999999998863 111 112222222233 3567899999999743 23344455
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+.++|++++|+|++++-+... ...+..+..... ....|+++|+||+|...
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPG 114 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCcc
Confidence 677899999999984422222 222222222111 12358999999999875
No 125
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.56 E-value=1.1e-13 Score=130.34 Aligned_cols=124 Identities=23% Similarity=0.225 Sum_probs=91.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
...+|+|+|.+|+|||||+|+|+|....... ...++|......... +.+..+.+|||||+.... ......+....
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~-~~~~~~~liDT~G~~~~~---~~~~~~~~~~~ 348 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAE-WAGTDFKLVDTGGWEADV---EGIDSAIASQA 348 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEE-ECCEEEEEEeCCCcCCCC---ccHHHHHHHHH
Confidence 3478999999999999999999987642222 234555555444333 467889999999986422 12334555555
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++|+|+|++..++..+..+.+.+... ..|+++|+||+|...
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQA 397 (712)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECccccc
Confidence 6667788999999999888888887777777642 358999999999864
No 126
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.56 E-value=6.4e-14 Score=109.10 Aligned_cols=116 Identities=17% Similarity=0.096 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+|+++|++|+|||||+++|++........ +............. .....+.+|||||..... .....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~l~~~D~~g~~~~~-----------~~~~~ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV-PTVFDNYSATVTVD-GKQVNLGLWDTAGQEEYD-----------RLRPL 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CceeeeeEEEEEEC-CEEEEEEEEeCCCccccc-----------ccchh
Confidence 489999999999999999999876522211 11111111111111 124468999999986532 12223
Q ss_pred hcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+..+|++++|+|++++.+... ..++..+....+ ..|+++|+||+|...
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRD 118 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhh
Confidence 4467899999999985444332 334444444322 368999999999876
No 127
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.56 E-value=5.6e-14 Score=109.93 Aligned_cols=112 Identities=24% Similarity=0.170 Sum_probs=72.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 22 i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
|+++|++|+|||||++++++........ + +....+......++ ..+.+|||||..... .....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYV-P---TVFENYSADVEVDGKPVELGLWDTAGQEDYD-----------RLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCC-C---cEEeeeeEEEEECCEEEEEEEEECCCCcccc-----------hhchh
Confidence 6899999999999999999876422211 1 11111111111233 368899999975432 23344
Q ss_pred hcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+.++|++|+|+|++++-+... ..++..+.... ...|+++|.||.|...
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 116 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLRE 116 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhh
Confidence 5678899999999985544433 23455554432 2468999999999875
No 128
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.56 E-value=1.1e-13 Score=108.13 Aligned_cols=112 Identities=17% Similarity=0.103 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
||+++|.+|+|||||++++.+.... . ...|......... ..+..+.+|||||.... ......+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~---~~~T~~~~~~~~~-~~~~~i~l~Dt~G~~~~-----------~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q---PIPTIGFNVETVE-YKNLKFTIWDVGGKHKL-----------RPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C---cCCcCceeEEEEE-ECCEEEEEEECCCChhc-----------chHHHHH
Confidence 6899999999999999999987431 1 1223333333333 36778999999998532 2344455
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~ 151 (253)
+.++|+++||+|.+++-+..+ ...++...+... ...|++||+||.|...
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSE--AHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 678899999999985433322 223333333211 1258999999999864
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.56 E-value=1.2e-13 Score=105.76 Aligned_cols=112 Identities=22% Similarity=0.200 Sum_probs=71.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc
Q 025391 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (253)
Q Consensus 22 i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (253)
|+|+|++|+|||||+|.|.+........ .|......... ..+..+.+|||||.. .+......++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~----~t~~~~~~~~~-~~~~~~~~~D~~g~~-----------~~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTI----PTVGFNMRKVT-KGNVTLKVWDLGGQP-----------RFRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCcc----CCCCcceEEEE-ECCEEEEEEECCCCH-----------hHHHHHHHHH
Confidence 7999999999999999999986432221 12222222233 245789999999973 2334455566
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 102 DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 102 ~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
..+|++++|+|++...+... ...++...+.. ....|+++|+||.|...
T Consensus 66 ~~~d~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 66 RGVNAIVYVVDAADRTALEA--AKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred hcCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 78899999999874322211 11222222211 12358999999999875
No 130
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.56 E-value=2.6e-13 Score=104.90 Aligned_cols=120 Identities=22% Similarity=0.306 Sum_probs=76.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh-
Q 025391 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA- 100 (253)
Q Consensus 22 i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~- 100 (253)
|+++|++|+|||||+|.|++...........+.|....... ....+.+|||||+.....+ ......+...+..+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN----VNDKFRLVDLPGYGYAKVS-KEVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEE----ccCeEEEecCCCccccccC-HHHHHHHHHHHHHHH
Confidence 89999999999999999995433222222223333332221 2238899999998765432 21222333332222
Q ss_pred --cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 101 --KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 --~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....+++++++|.+...+.....+++++... + .|+++|+||+|...
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~ 124 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLK 124 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCC
Confidence 2345788999998866666666677777653 2 47999999999975
No 131
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.56 E-value=6.1e-14 Score=110.21 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccc------cC-------CCCccceeeeeeeeEe----eCCeEEEEEeCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKS------RA-------SSSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDF 82 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~------~~-------~~~~~t~~~~~~~~~~----~~~~~~~liDtpG~~~~ 82 (253)
++|+++|.+|+|||||+++|++...... .. ...+.+.........+ ..+..+.+|||||+.++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 4799999999999999999987431100 00 0112232222221211 23567889999998643
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
......++.++|++|+|+|+++..+..+...+..+.. ...|+++|+||+|...
T Consensus 81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-----NNLEIIPVINKIDLPS 133 (179)
T ss_pred -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----cCCCEEEEEECCCCCc
Confidence 2333345567899999999987666655444433322 1247999999999753
No 132
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.56 E-value=1.8e-13 Score=107.57 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=74.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+++|.+|+|||||++.+...... .. ..|......... ..+..+.+|||||... +.....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~----~~t~~~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~~~~ 75 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TT----IPTIGFNVETVT-YKNISFTVWDVGGQDK-----------IRPLWR 75 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-Cc----CCccccceEEEE-ECCEEEEEEECCCChh-----------hHHHHH
Confidence 489999999999999999999643321 11 122222222233 3567899999999743 334455
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~ 151 (253)
.++.++|++|+|+|++++.+... ..+++...+... ...|++||+||.|...
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDE--AREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 66788999999999985533322 223333332211 2358999999999864
No 133
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.56 E-value=8.5e-15 Score=107.46 Aligned_cols=116 Identities=20% Similarity=0.193 Sum_probs=69.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcc--ccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFK--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
||+++|+.|+|||||+++|++..... ......+.+......... .....+.+||++|......... .+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~-------~~-- 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-GDRQSLQFWDFGGQEEFYSQHQ-------FF-- 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-TEEEEEEEEEESSSHCHHCTSH-------HH--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-CCceEEEEEecCccceeccccc-------ch--
Confidence 79999999999999999999887541 111122223222222211 1233588999999843221111 11
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
...+|++++|+|++++.+... ..++.++....+.....|++||.||.|
T Consensus 71 --~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 --LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp --HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred --hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 345689999999985544444 345556666543233469999999998
No 134
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.56 E-value=5.2e-14 Score=122.30 Aligned_cols=124 Identities=24% Similarity=0.289 Sum_probs=91.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+++|+|+|+++||||||+|+|++.+...... ..|+|.+.-...+. .+|..+.++||+|+-++..--|.. -+.+.
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd-I~GTTRDviee~i~-i~G~pv~l~DTAGiRet~d~VE~i--GIeRs 290 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTD-IAGTTRDVIEEDIN-LNGIPVRLVDTAGIRETDDVVERI--GIERA 290 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecC-CCCCccceEEEEEE-ECCEEEEEEecCCcccCccHHHHH--HHHHH
Confidence 356899999999999999999999998754432 34556666555555 589999999999998765544432 22333
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.... ..+|.+|+|+|++.+++..+...+..+ +..+|+++|.||.|...
T Consensus 291 ~~~i-~~ADlvL~v~D~~~~~~~~d~~~~~~~------~~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 291 KKAI-EEADLVLFVLDASQPLDKEDLALIELL------PKKKPIIVVLNKADLVS 338 (454)
T ss_pred HHHH-HhCCEEEEEEeCCCCCchhhHHHHHhc------ccCCCEEEEEechhccc
Confidence 3332 567999999999977788887776611 12358999999999987
No 135
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.56 E-value=3.2e-14 Score=110.45 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=70.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
+|+++|++|+|||||++++++.... ....+....... .... .++ ..+.+|||||...... ....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~-~~~~~t~~~~~~--~~~~-~~~~~~~~~i~D~~g~~~~~~----------~~~~ 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI-GEYDPNLESLYS--RQVT-IDGEQVSLEILDTAGQQQADT----------EQLE 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc-cccCCChHHhce--EEEE-ECCEEEEEEEEECCCCccccc----------chHH
Confidence 5899999999999999998865431 111111111111 1111 233 3678999999863111 1122
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++..+|++|+|+|+++.-+... ..++.++..........|+++|+||+|...
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 33456799999999986544443 334555555321122368999999999753
No 136
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.56 E-value=1.8e-13 Score=108.35 Aligned_cols=127 Identities=12% Similarity=0.090 Sum_probs=79.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
....+|+++|.+|||||||++.+++...... . .|......... ..+..+.++||||... ....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~----~t~~~~~~~~~-~~~~~~~~~D~~G~~~-----------~~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-Q----PTQHPTSEELA-IGNIKFTTFDLGGHQQ-----------ARRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-C----CccccceEEEE-ECCEEEEEEECCCCHH-----------HHHH
Confidence 3458999999999999999999998754211 1 12222222232 3677899999999742 2344
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCC-ChhhHHHHHc
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELED-NDETLEDYLG 162 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~~-~~~~~~~~~~ 162 (253)
...++.++|++++|+|++++-+... ...++.+.+.. ....|+++|+||.|.... ....+.+.+.
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~--~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~ 144 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAE--SKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALG 144 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHH--HHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcC
Confidence 4566788999999999974322211 11223333221 123589999999998531 1334444443
No 137
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.56 E-value=2.2e-13 Score=106.87 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=74.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+++|++|+|||||++.|++...... ..|......... ..+..+.+|||||... +.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~l~D~~G~~~-----------~~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIV-YKNIRFLMWDIGGQES-----------LRSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEE-ECCeEEEEEECCCCHH-----------HHHHHH
Confidence 47999999999999999999987654221 122222233333 3577899999999742 334445
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~ 151 (253)
.++.++|++++|+|++++-+... ...++...+... ...|+++++||.|...
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~--~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPL--TKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 56678999999999985432222 112222222211 2368999999999864
No 138
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.56 E-value=1.3e-13 Score=109.94 Aligned_cols=114 Identities=18% Similarity=0.038 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeee-eeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|.+|+|||||+..+......... ..|....+. .+.. .....+.+|||||... +....
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~-----------~~~l~ 68 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEY----IPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE-----------YDRLR 68 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCC----CCceEeeeEEEEEECCEEEEEEEEECCCchh-----------hhhhh
Confidence 79999999999999999999876432221 122211111 1111 1235688999999843 33445
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++.++|++|+|+|++++-+.... .+...+.... ...|++||.||.|+..
T Consensus 69 ~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~ 121 (191)
T cd01875 69 TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhc
Confidence 5677899999999999866554442 2344444322 2368999999999853
No 139
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.56 E-value=6.1e-14 Score=125.39 Aligned_cols=122 Identities=25% Similarity=0.281 Sum_probs=80.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
..++|+++|.+|+|||||+|+|++........ ..+.|.......+. .++..+.+|||||+.++....+. ..+.+..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~-~~g~~i~l~DT~G~~~~~~~ie~--~gi~~~~ 289 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTD-IAGTTRDVIEEHIN-LDGIPLRLIDTAGIRETDDEVEK--IGIERSR 289 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcccccEEEEEE-ECCeEEEEEeCCCCCCCccHHHH--HHHHHHH
Confidence 34799999999999999999999976422222 22344444333343 36788999999998653211111 1122222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+..+|++++|+|++++.+..+...+.. . ...|+++|+||+|...
T Consensus 290 -~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~---~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 290 -EAIEEADLVLLVLDASEPLTEEDDEILEE----L---KDKPVIVVLNKADLTG 335 (449)
T ss_pred -HHHHhCCEEEEEecCCCCCChhHHHHHHh----c---CCCCcEEEEEhhhccc
Confidence 34467899999999987776665443322 1 1258999999999975
No 140
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.55 E-value=8.6e-14 Score=108.24 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=72.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
+|+++|.+|||||||++++++...... .......... .... ......+.+|||||..... ..+...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~~~-~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~~~ 67 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEITI-PADV-TPERVPTTIVDTSSRPQDR-----------ANLAAE 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccceEe-eeee-cCCeEEEEEEeCCCchhhh-----------HHHhhh
Confidence 899999999999999999998764322 1111111110 0111 1245678999999975421 122233
Q ss_pred cCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+..+|++++|+|++++.+... ..++..+....+ ..|+++|+||+|...
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~pviiv~nK~Dl~~ 117 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLRD 117 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccc
Confidence 477899999999985555444 234455554322 358999999999975
No 141
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.55 E-value=7.3e-14 Score=109.80 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.+|+++|.+|+|||||+..++..........+.+.... ..+.. .....+.+|||+|...+. ....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~---~~~~~~~~~v~l~i~Dt~G~~~~~-----------~~~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS---ANVSVDGNTVNLGLWDTAGQEDYN-----------RLRP 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE---EEEEECCEEEEEEEEECCCCcccc-----------ccch
Confidence 58999999999999999999876542221111111111 11111 123578899999986533 3334
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++.++|++|+|+|++++-+.... .++..+....+ ..|++||.||+|+..
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~ 119 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLRD 119 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeChhhcc
Confidence 567889999999999977776652 45555554322 358999999999854
No 142
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.55 E-value=1.8e-13 Score=105.83 Aligned_cols=112 Identities=15% Similarity=0.098 Sum_probs=72.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
||+++|.+|+|||||++.+...... ... +|.......+. .....+.+|||||... +......+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~----pt~g~~~~~~~-~~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTI----PTIGFNVETVE-YKNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccC----CCCCcceEEEE-ECCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 7999999999999999999654332 111 12212222222 3567899999999742 33444566
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~ 151 (253)
+.++|++|||+|++++.+... ..+++....... ...|++|++||.|...
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 788999999999985433222 223333332211 1258999999999864
No 143
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.55 E-value=1.4e-13 Score=106.27 Aligned_cols=116 Identities=19% Similarity=0.172 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|++|+|||||++.+++...........+.. +......+ ...+.+|||||.... ....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS----YRKKVVLDGEDVQLNILDTAGQEDY-----------AAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh----EEEEEEECCEEEEEEEEECCChhhh-----------hHHH
Confidence 489999999999999999999765422111111111 11111122 357889999997542 2333
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++...|++++|++++++-+... ..+...+..... ....|+++|+||+|...
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 445567799999999874332222 333333433311 23468999999999875
No 144
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.55 E-value=1.2e-13 Score=111.09 Aligned_cols=117 Identities=15% Similarity=0.178 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCC-ccccCCCCccceeeeeeeeEee--------------------------------
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLK-------------------------------- 66 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~-------------------------------- 66 (253)
.+|+++|++|+|||||+.+|++... ...+....+.+..+.+....+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3799999999999999999988732 1122223334444433332211
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccCeEEEEEe
Q 025391 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (253)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~~l~~l~~~~g~~~~~~~ivv~~ 145 (253)
....+.+|||||. ..+...+......+|++++|+|++.+ ........+..+.. .+. +|++||+|
T Consensus 81 ~~~~i~~iDtPG~-----------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGH-----------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN 145 (203)
T ss_pred cccEEEEEECCCh-----------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence 1267999999996 23444444455678999999999853 33444445544433 232 36899999
Q ss_pred CCCCCC
Q 025391 146 GGDELE 151 (253)
Q Consensus 146 k~D~~~ 151 (253)
|+|...
T Consensus 146 K~Dl~~ 151 (203)
T cd01888 146 KIDLVK 151 (203)
T ss_pred chhccC
Confidence 999975
No 145
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.55 E-value=2.9e-13 Score=106.97 Aligned_cols=116 Identities=15% Similarity=0.079 Sum_probs=76.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
....+|+++|..|+|||||++.+....... . ..|.......+. ..+..+.+|||||.. .+...
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~----~pt~g~~~~~~~-~~~~~~~i~D~~Gq~-----------~~~~~ 77 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-T----IPTIGFNVETVE-YKNISFTVWDVGGQD-----------KIRPL 77 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-c----cCCcceeEEEEE-ECCEEEEEEECCCCH-----------HHHHH
Confidence 344899999999999999999997544321 1 122222222333 367789999999963 34455
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~ 151 (253)
...++.++|++|+|+|++++.+... ...++...+... ...|++||+||.|...
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 5666788999999999985443322 223344333221 2358999999999764
No 146
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.55 E-value=1.7e-13 Score=105.67 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=72.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
||+++|++|+|||||++.|........ ..|......... ..+..+.+|||||... +......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVT-YKNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEE-ECCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 689999999999999999976654221 112222222333 3567899999999843 33444556
Q ss_pred cCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+.++|++|+|+|++++.+... ..+...+... . ....|+++|+||+|...
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~-~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE-E-LKGAVLLVFANKQDMPG 114 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch-h-hcCCcEEEEEeCCCCCC
Confidence 678999999999885432221 2222222211 1 12368999999999864
No 147
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.55 E-value=2e-13 Score=107.16 Aligned_cols=115 Identities=17% Similarity=0.053 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.+|+++|.+|+|||||+.++++........++.+.... ..+.. .....+.+|||||.... .....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~---~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS---ANVMVDGKPVNLGLWDTAGQEDY-----------DRLRP 67 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE---EEEEECCEEEEEEEEECCCchhh-----------hhhhh
Confidence 58999999999999999999875432211111111111 11111 12357889999997432 23334
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++.++|++|+|+|++++-+.... .++..+.... ...|++||.||.|...
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~ 119 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRD 119 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhcc
Confidence 566789999999999865554442 3445454432 2358999999999853
No 148
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.2e-13 Score=106.35 Aligned_cols=121 Identities=13% Similarity=0.122 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
...+|+++|..++||||||+..+-......-..+.|+........+. ....++.+|||+|+ ++++..+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~-d~~vrLQlWDTAGQ-----------ERFrsli 88 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ-----------ERFRSLI 88 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEc-CcEEEEEEEecccH-----------HHHhhhh
Confidence 44799999999999999999998765533333444444444433333 23568999999998 6777888
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+.+.+++.++|+|+|++++-+.+. ..|++-+...-|.. ...+++|.||.|+.+
T Consensus 89 psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 89 PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSD 142 (221)
T ss_pred hhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccc
Confidence 999999999999999998888776 66777666655543 246889999999997
No 149
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.54 E-value=3.2e-14 Score=107.67 Aligned_cols=101 Identities=19% Similarity=0.249 Sum_probs=65.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
+|+++|++|+|||||+|++++.... ...|.. ..+ .. .+|||||.... ...+.+.+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~-----~~~-~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA-----VEY-ND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------ccccee-----EEE-cC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 7999999999999999999987531 111221 111 12 68999997321 11222222234
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+.++|++|+|+|++++.+.....++. .++ .|+++|+||+|...
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAE 102 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCC
Confidence 68899999999998776654433322 222 37999999999864
No 150
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.54 E-value=8.8e-14 Score=107.64 Aligned_cols=116 Identities=18% Similarity=0.180 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|.+|+|||||++.+++.........+.+ ......+. ..+ ..+.+|||||...+. ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~---~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE---DFYRKEIE-VDSSPSVLEILDTAGTEQFA-----------SMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh---heEEEEEE-ECCEEEEEEEEECCCccccc-----------chH
Confidence 6899999999999999999987654322111111 11111222 233 357789999975432 233
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++.++|++++|+|++++-+..+ ..++..+....+ ....|+++|+||+|...
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLES 120 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 345577899999999985544333 334444544322 13468999999999854
No 151
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.54 E-value=1.3e-13 Score=112.45 Aligned_cols=117 Identities=20% Similarity=0.070 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCc-cccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.+|+++|.+|+|||||++.+++.... .....+.+.........+. .....+.+|||||... ....
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~i~Dt~G~~~-------------~~~~ 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD-GEESTLVVIDHWEQEM-------------WTED 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC-CEEEEEEEEeCCCcch-------------HHHh
Confidence 48999999999999999999765442 1111111111111111111 1345789999999851 0111
Q ss_pred hhcC-CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKD-GIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~-~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++. ++|++++|+|++++-+... ..++..+... ......|+++|+||+|...
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhccc
Confidence 2334 7899999999986544432 3444444443 2123468999999999864
No 152
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.54 E-value=1.6e-13 Score=107.78 Aligned_cols=113 Identities=20% Similarity=0.107 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeee-eeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+|+++|.+|+|||||++.+........ ...|....+. .+. ..+ ..+.+|||||...+. ..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~----~~pt~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~-----------~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSE----YVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYD-----------RL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeeeeEEEEE-ECCEEEEEEEEECCCccchh-----------hh
Confidence 6899999999999999999987654221 1122222111 122 233 578899999985432 23
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++.++|++|+|+|++++-+.... .++..+....+ ..|++||.||.|...
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~ 119 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLRD 119 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence 34466788999999999866555442 35555544322 358999999999864
No 153
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.54 E-value=3.3e-13 Score=106.73 Aligned_cols=115 Identities=12% Similarity=0.077 Sum_probs=74.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
...+|+++|++|+|||||++.+....... . ..|.......+. ..+..+.+|||||.. .+....
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~--~---~~T~~~~~~~~~-~~~~~~~l~D~~G~~-----------~~~~~~ 78 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT--T---IPTIGFNVETVE-YKNLKFTMWDVGGQD-----------KLRPLW 78 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--c---CCccccceEEEE-ECCEEEEEEECCCCH-----------hHHHHH
Confidence 34899999999999999999996543321 1 112222223333 367789999999973 233455
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~ 151 (253)
..++.++|++|+|+|++++-+... ..+++...+... ...|++||+||.|...
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 667789999999999985433222 222333333221 2358999999999754
No 154
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=2.4e-13 Score=121.42 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
..|+|||.++||||||+|.|++..... ......|.......+. ..+..++++||||+.+..+....+...+.+.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkI--adypfTTl~P~lGvv~-~~~~~f~laDtPGliegas~g~gLg~~fLrhi-- 234 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKI--ADYPFTTLVPNLGVVQ-AGDTRFTVADVPGLIPGASEGKGLGLDFLRHI-- 234 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccc--cccCcccccceEEEEE-ECCeEEEEEECCCCccccchhhHHHHHHHHHH--
Confidence 479999999999999999999875421 2223445555555444 36678999999999754333333333333333
Q ss_pred hcCCccEEEEEEeCCCCC---CH-HH-HHHHHHHHHHhc---------ccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRF---SQ-EE-EAALHSLQTLFG---------KKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~---~~-~~-~~~l~~l~~~~g---------~~~~~~~ivv~~k~D~~~ 151 (253)
..+|++|+|+|+++.. ++ .+ ..+.+.+..+.. ....+|.+||+||+|...
T Consensus 235 --eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d 298 (500)
T PRK12296 235 --ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD 298 (500)
T ss_pred --HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh
Confidence 4568999999987321 11 12 222233333221 123468999999999864
No 155
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.54 E-value=1.8e-13 Score=105.08 Aligned_cols=115 Identities=18% Similarity=0.151 Sum_probs=72.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
+|+++|++|+|||||++++++... .....+. +......... .. ...+.+||+||... +.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~--~~~~~~~~~~-~~~~~~~~~l~D~~g~~~-----------~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPT--IEDSYRKTIV-VDGETYTLDILDTAGQEE-----------FSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCC--hhHeEEEEEE-ECCEEEEEEEEECCChHH-----------HHHHHH
Confidence 589999999999999999998763 2221111 1111112222 23 35688999999743 223334
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+...|++++|+|++++-+..+ ..+...+....+. ...|+++|+||+|...
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence 45567799999999875433332 3333444443331 2468999999999975
No 156
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.54 E-value=2.3e-13 Score=113.92 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=81.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccc----------------cCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (253)
+|+++|+.|+|||||+++|+....... .....+.|.......+. +.+..+++|||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~df~- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-WKDHRINIIDTPGHVDFT- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE-ECCEEEEEEECCCcHHHH-
Confidence 489999999999999999974321100 01133556666556555 478899999999986522
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....+...+|++|+|+|+.......+..+++.+... + .|.++++||+|...
T Consensus 79 ----------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~~ 130 (270)
T cd01886 79 ----------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-N----VPRIAFVNKMDRTG 130 (270)
T ss_pred ----------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCC
Confidence 2233445566999999999878888777777766543 3 47899999999874
No 157
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.4e-13 Score=107.72 Aligned_cols=123 Identities=16% Similarity=0.101 Sum_probs=91.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
+....++|++||.+|+|||+++-++...........+.++.........+ .....+.+|||.|. +++.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~-g~~i~lQiWDtaGQ-----------erf~ 75 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELD-GKKIKLQIWDTAGQ-----------ERFR 75 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeC-CeEEEEEEEEcccc-----------hhHH
Confidence 34455899999999999999999998766544434444444444333332 13457889999998 5666
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+..++.+++++++|+|+++.-+.+. ..|++++.+.-.. ..+.++|.||+|+..
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEE 131 (207)
T ss_pred HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccc
Confidence 788888899999999999987666555 6688888887544 358999999999975
No 158
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.53 E-value=1.5e-13 Score=105.50 Aligned_cols=115 Identities=22% Similarity=0.236 Sum_probs=72.5
Q ss_pred EEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCC
Q 025391 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG 103 (253)
Q Consensus 24 lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (253)
|+|.+|+|||||+|+|+|....... ..+.|.......+. ..+..+.+|||||+.+....... ..+....... ++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~--~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~--~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGN--WPGVTVEKKEGRFK-LGGKEIEIVDLPGTYSLSPYSED--EKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccC--CCCcccccceEEEe-eCCeEEEEEECCCccccCCCChh--HHHHHHHhcC-CC
Confidence 5899999999999999998632221 23344444444444 35678999999999765432111 1222221111 68
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 104 ~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+|++++|+|+++. .. ...+...+.. . ..|+++|+||+|...
T Consensus 75 ~d~vi~v~d~~~~-~~-~~~~~~~~~~-~----~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 75 PDLIVNVVDATNL-ER-NLYLTLQLLE-L----GLPVVVALNMIDEAE 115 (158)
T ss_pred CcEEEEEeeCCcc-hh-HHHHHHHHHH-c----CCCEEEEEehhhhcc
Confidence 8999999999743 22 2233333333 2 258999999999975
No 159
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=4.8e-14 Score=109.98 Aligned_cols=121 Identities=18% Similarity=0.124 Sum_probs=91.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...++|+++|.+|+|||-|+-+.+.........++.++........+. .+-.+..+|||+|+ ++++..
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd-~k~vkaqIWDTAGQ-----------ERyrAi 79 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVD-GKTVKAQIWDTAGQ-----------ERYRAI 79 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeec-CcEEEEeeecccch-----------hhhccc
Confidence 345899999999999999999998877655556666666555544443 24457889999998 566677
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+.+++++.+.|+|.|++.+.+.+. ..||+.|+.... ...++++|.||+|+..
T Consensus 80 tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad--~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 80 TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNH 133 (222)
T ss_pred cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC--CCeEEEEeecchhhhh
Confidence 7899999999999999997777765 444455554432 3468999999999974
No 160
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.52 E-value=2.1e-13 Score=110.81 Aligned_cols=113 Identities=23% Similarity=0.135 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
++|+++|.+|+|||||++.+++...... ..|....+.... .....+.+|||||...+. .....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~~~-~~~~~l~iwDt~G~e~~~-----------~l~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYLKQ-WGPYNISIWDTAGREQFH-----------GLGSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEEEE-eeEEEEEEEeCCCcccch-----------hhHHH
Confidence 4899999999999999999998764321 112222222222 245678999999975432 23344
Q ss_pred hcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~-~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++.++|++|+|+|++++.+.... .++..+.+..+. ..|++||.||.|+..
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 56788999999999866555542 233333333222 358999999999864
No 161
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.52 E-value=2.7e-13 Score=108.10 Aligned_cols=116 Identities=16% Similarity=0.267 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCC---cccc--CCCCccceeeeeeeeEe-------------eCCeEEEEEeCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRA---FKSR--ASSSGVTSTCEMQRTVL-------------KDGQVVNVIDTPGLFD 81 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~---~~~~--~~~~~~t~~~~~~~~~~-------------~~~~~~~liDtpG~~~ 81 (253)
.+|+++|++|+|||||+++|++... +... ....+.|.......... ..+..+.+|||||+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 3799999999999999999997311 0000 01123344433333322 125689999999973
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+...+......+|++++|+|++...+..+...+... ...+ .|+++|+||+|...
T Consensus 80 ----------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~~----~~~iiv~NK~Dl~~ 134 (192)
T cd01889 80 ----------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG-EILC----KKLIVVLNKIDLIP 134 (192)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHcC----CCEEEEEECcccCC
Confidence 2222232334567999999999866666554444433 2223 47999999999975
No 162
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.52 E-value=7.4e-14 Score=107.89 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+|+++|.+|+|||||+|.|.|..... ..+..+ .+ ... .+|||||..... .++.+.+..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~v-----~~-~~~--~~iDtpG~~~~~-------~~~~~~~~~ 60 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKTQAV-----EF-NDK--GDIDTPGEYFSH-------PRWYHALIT 60 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCccC------ccceEE-----EE-CCC--CcccCCccccCC-------HHHHHHHHH
Confidence 379999999999999999999874211 111111 11 111 269999986432 112222223
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHH
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL 161 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~ 161 (253)
.+.++|++|+|+|++...+.... ++... +. ..|+++++||+|....+...+.+++
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~~~~~~~~~~ 115 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMPDADVAATRKLL 115 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccCcccHHHHHHHH
Confidence 35788999999999855443222 22222 11 2479999999998542233334444
No 163
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.52 E-value=3.4e-13 Score=123.69 Aligned_cols=117 Identities=19% Similarity=0.261 Sum_probs=83.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+.++|+++|+.++|||||+++|.+...... ..++.|.......+...++..+++|||||+.++. ..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-----------~~ 151 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-----------SM 151 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcchh-----------hH
Confidence 3558999999999999999999998765332 2345565555554543234489999999986532 33
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....+..+|++++|+++++...+.....+..+.. .+ .|+++++||+|...
T Consensus 152 r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~~----vPiIVviNKiDl~~ 201 (587)
T TIGR00487 152 RARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-AN----VPIIVAINKIDKPE 201 (587)
T ss_pred HHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-cC----CCEEEEEECccccc
Confidence 3345577899999999987777666666554433 22 47999999999864
No 164
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.52 E-value=1.5e-13 Score=109.36 Aligned_cols=114 Identities=19% Similarity=0.116 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeee-eeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|++|+|||||++.+++........ .|....+. .+.. .....+.+|||||...+. ...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~----~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-----------~l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYE----PTVFENYVHDIFVDGLHIELSLWDTAGQEEFD-----------RLR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccC----CcceeeeEEEEEECCEEEEEEEEECCCChhcc-----------ccc
Confidence 489999999999999999999875432211 12111111 1111 123578999999975422 233
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++.++|++++|++++++-+.... .++..+.... ...|+++|.||.|+..
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~ 118 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLRE 118 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence 3456788999999999866555432 3555555432 2358999999999875
No 165
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.52 E-value=6.4e-13 Score=101.28 Aligned_cols=118 Identities=25% Similarity=0.206 Sum_probs=76.4
Q ss_pred EEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCC
Q 025391 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG 103 (253)
Q Consensus 24 lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (253)
|+|++|+|||||+|+|++........ ..+.+...............+.+|||||+.+........ ..........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~----~~~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSP-VPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER----EELARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCC-CCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH----HHHHHHHHHh
Confidence 58999999999999999986543222 222333333333332226789999999998765433211 1223334467
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 104 ~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+|++++|+++....+.....+...... ...|+++|+||.|...
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLP 118 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCC
Confidence 799999999986666655542222221 2358999999999987
No 166
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.52 E-value=3.3e-13 Score=109.74 Aligned_cols=115 Identities=18% Similarity=0.059 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.+|+|||.+|+|||||++.+++...+....++.+.... ..+.. .....+.+|||+|.. .+.....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~---~~~~~~~~~v~L~iwDt~G~e-----------~~~~l~~ 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT---ASFEIDKRRIELNMWDTSGSS-----------YYDNVRP 67 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE---EEEEECCEEEEEEEEeCCCcH-----------HHHHHhH
Confidence 68999999999999999999976543221111111111 11111 123578899999974 2334455
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+++++|++|+|+|++++-+... ..+...+.... ...|++||.||.|+..
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~ 119 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRT 119 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECccccc
Confidence 67889999999999986644433 22333333322 2358999999999864
No 167
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.52 E-value=1.5e-13 Score=101.18 Aligned_cols=150 Identities=17% Similarity=0.142 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+.+|+|.+|+|||+|+-.+.......+...+.++........+. .....+.+|||+|. +.++....-
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~-G~~VkLqIwDtAGq-----------ErFrtitst 76 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDIN-GDRVKLQIWDTAGQ-----------ERFRTITST 76 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecC-CcEEEEEEeecccH-----------HHHHHHHHH
Confidence 567899999999999998887664321212222333333222222 23457889999997 677788888
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC---hhhHHHHHcccCCchhhhhHHH
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGATK 175 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~---~~~~~~~~~~~~~~~l~~~~~~ 175 (253)
++.++|++++|.|+++.-+... ..||+.+..... ..|-++|.||.|..... ......|-....-..++++.++
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe 153 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKE 153 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc---cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhh
Confidence 9999999999999997666655 555555555433 46899999999987521 2334445544555667777777
Q ss_pred hhhHHHHHH
Q 025391 176 LRDQQFEVD 184 (253)
Q Consensus 176 ~~~~~~~~~ 184 (253)
.+..+.|+.
T Consensus 154 ~~NvE~mF~ 162 (198)
T KOG0079|consen 154 NENVEAMFH 162 (198)
T ss_pred cccchHHHH
Confidence 777777765
No 168
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.52 E-value=2.8e-13 Score=106.65 Aligned_cols=116 Identities=21% Similarity=0.185 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+|+|.+|+|||||++.+++............... ..... .. ...+.+|||||..+ +....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~---~~~~~-~~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF---SKIIR-YKGQDYHLEIVDTAGQDE-----------YSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE---EEEEE-ECCEEEEEEEEECCChHh-----------hHHHH
Confidence 6899999999999999999997754221111111111 11111 22 34678999999743 22333
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++...|++++|+|.++..+... ..+...+.+..+ ....|+++|+||+|...
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHT 120 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhh
Confidence 445567899999999985443333 233334433322 12358999999999864
No 169
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.51 E-value=6e-13 Score=125.50 Aligned_cols=124 Identities=22% Similarity=0.211 Sum_probs=83.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI- 97 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~- 97 (253)
.++|+|+|.+|+|||||+|+|++....... ...+.|......... .++..+.+|||||+........ ..+....+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~-~~~~~~~liDTaG~~~~~~~~~--~~e~~~~~r 525 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVE-IDGEDWLFIDTAGIKRRQHKLT--GAEYYSSLR 525 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEE-ECCCEEEEEECCCcccCcccch--hHHHHHHHH
Confidence 479999999999999999999998642222 122334333323233 4677889999999864322111 11111111
Q ss_pred -HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 -GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 -~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++++|+|++...+..+..++..+... ..|++||+||+|...
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~~ 575 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-----GRALVLVFNKWDLMD 575 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEEchhcCC
Confidence 2345778999999999988988887766655442 258999999999975
No 170
>PLN00023 GTP-binding protein; Provisional
Probab=99.51 E-value=3.9e-13 Score=113.58 Aligned_cols=124 Identities=18% Similarity=0.158 Sum_probs=79.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe------------eCCeEEEEEeCCCCCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL------------KDGQVVNVIDTPGLFDFSA 84 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~~liDtpG~~~~~~ 84 (253)
....+|+|||.+|||||||++.+++.........+.+.+.......+.. .....+.||||+|..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE---- 94 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE---- 94 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh----
Confidence 3448999999999999999999997654222222222222211111110 023468899999974
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc----------cccCeEEEEEeCCCCCC
Q 025391 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK----------KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~----------~~~~~~ivv~~k~D~~~ 151 (253)
.+..+...++.+++++|+|+|++++-+... ..+++.+....+. ....+++||.||+|+..
T Consensus 95 -------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 95 -------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred -------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 344566677899999999999986555444 3455555543210 01258999999999864
No 171
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.51 E-value=7.6e-13 Score=108.60 Aligned_cols=88 Identities=19% Similarity=0.205 Sum_probs=58.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
+|+|+|.+|+|||||+|.|+|...... .....|..+....+. ..+..+.+|||||+.+....... +...+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~--~~~~tT~~~~~g~~~-~~~~~i~l~DtpG~~~~~~~~~~----~~~~~l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA--AYEFTTLTCVPGVLE-YKGAKIQLLDLPGIIEGAADGKG----RGRQVIAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc--CCCCccccceEEEEE-ECCeEEEEEECCCcccccccchh----HHHHHHHh
Confidence 789999999999999999999864221 122334334333333 47788999999998654321111 11222334
Q ss_pred cCCccEEEEEEeCCC
Q 025391 101 KDGIHAVLVVFSVRS 115 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~ 115 (253)
+..+|++++|+|+++
T Consensus 75 ~~~ad~il~V~D~t~ 89 (233)
T cd01896 75 ARTADLILMVLDATK 89 (233)
T ss_pred hccCCEEEEEecCCc
Confidence 577899999999864
No 172
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.51 E-value=4.2e-13 Score=104.82 Aligned_cols=117 Identities=13% Similarity=-0.028 Sum_probs=72.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCc-cccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
+..+|+++|.+|+|||||++++++.... .....+.+.... ...+. ..+ ..+.+||++|...+.
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~--~~~~~-~~~~~~~l~~~d~~g~~~~~----------- 68 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYA--VNTVE-VYGQEKYLILREVGEDEVAI----------- 68 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceE--EEEEE-ECCeEEEEEEEecCCccccc-----------
Confidence 4589999999999999999999987643 111111111111 11122 133 467899999975432
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++.++|++|+|+|++++.+.. .+..++... ......|+++|+||+|...
T Consensus 69 ~~~~~~~~~~d~~llv~d~~~~~s~~--~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 69 LLNDAELAACDVACLVYDSSDPKSFS--YCAEVYKKY-FMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred ccchhhhhcCCEEEEEEeCCCHHHHH--HHHHHHHHh-ccCCCCeEEEEEEcccccc
Confidence 22234457889999999997543222 222333332 1122468999999999864
No 173
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.51 E-value=5e-13 Score=111.72 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccC--C------------------CCccceeeeeeeeEeeCCeEEEEEeCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA--S------------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~--~------------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (253)
++|+|+|+.|+|||||+++|+......... . ..+.+.......+. +++..+.+|||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~-~~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE-YRDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEe-eCCEEEEEEECCCc
Confidence 689999999999999999998543211110 0 11233333334444 47889999999998
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++. .....++..+|++|+|+|++.........+++.... .+ .|+++++||+|...
T Consensus 82 ~df~-----------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~~----~P~iivvNK~D~~~ 137 (267)
T cd04169 82 EDFS-----------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-RG----IPIITFINKLDREG 137 (267)
T ss_pred hHHH-----------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh-cC----CCEEEEEECCccCC
Confidence 6432 222233456799999999987776665555544433 22 47999999999865
No 174
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.51 E-value=4e-13 Score=110.44 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=79.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcccc----------------CCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (253)
+|+++|+.|+|||||+++|+........ ....+.+.......+. +.+..+.+|||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~-~~~~~i~liDTPG~~~f~- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ-WEDTKVNLIDTPGHMDFI- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE-ECCEEEEEEeCCCccchH-
Confidence 4899999999999999999865321110 0112334444444444 478899999999997542
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++++|+|+++........+++.+.+. + .|.++++||+|...
T Consensus 79 ----------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~----~P~iivvNK~D~~~ 130 (237)
T cd04168 79 ----------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-N----IPTIIFVNKIDRAG 130 (237)
T ss_pred ----------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccccC
Confidence 2223344566999999999888777666666665542 3 47899999999874
No 175
>CHL00071 tufA elongation factor Tu
Probab=99.51 E-value=3.5e-13 Score=119.44 Aligned_cols=119 Identities=15% Similarity=0.216 Sum_probs=83.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc--------------CCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (253)
.+.++|+++|+.++|||||+++|++....... ....+.|.......+. .++..+.++||||+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh~-- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHA-- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-cCCeEEEEEECCChH--
Confidence 45589999999999999999999975321110 1124555555444443 356789999999963
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+...+......+|++++|+|+...+...+...+..+... |. +++++++||+|...
T Consensus 87 ---------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~---~~iIvvvNK~D~~~ 142 (409)
T CHL00071 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GV---PNIVVFLNKEDQVD 142 (409)
T ss_pred ---------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEccCCCC
Confidence 2333333444677999999999878888888888776543 42 24778999999975
No 176
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.50 E-value=3e-13 Score=105.92 Aligned_cols=114 Identities=20% Similarity=0.095 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
++|+++|++|+|||||++++++.... ....+.. ......... .+ ...+.+|||||..... ...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t~--~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP-TEYVPTA--FDNFSVVVL-VDGKPVRLQLCDTAGQDEFD-----------KLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCce--eeeeeEEEE-ECCEEEEEEEEECCCChhhc-----------ccc
Confidence 47999999999999999999875432 2222211 111111121 22 3467899999984322 223
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++.++|++|+|+|++++.+... ..++..+.... ...|+++|.||.|...
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 118 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRT 118 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhcc
Confidence 446678899999999986655443 23455554432 1358999999999864
No 177
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.50 E-value=5e-13 Score=107.47 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
++|+|+|++|+|||||++.|.+........+ +......... ..+..+.+|||||... ++..
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-----~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~ 64 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTS-----IEPNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDK 64 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCc-----EeecceEEEeecCCCCceEEEEECCCCHH-----------HHHH
Confidence 3799999999999999999998754222111 1111111111 1356899999999843 3344
Q ss_pred HHhhcCCc-cEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGI-HAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~-~~~l~v~d~~~~~~~~~~~~l~~l~~~~g----~~~~~~~ivv~~k~D~~~ 151 (253)
+..++... +++|||+|+++... .-.....++...+. .....|++|+.||.|...
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~~~-~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATFQK-NLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred HHHHHhccCCEEEEEEECccchh-HHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 44445565 99999999984422 22222333322211 112468999999999875
No 178
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.50 E-value=4.8e-13 Score=110.67 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|..|+|||||++.+++..... ...+......... +. .++ ..+.+|||||..++ ....
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~-~y~pTi~d~~~k~--~~-i~~~~~~l~I~Dt~G~~~~-----------~~~~ 65 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE-QYTPTIEDFHRKL--YS-IRGEVYQLDILDTSGNHPF-----------PAMR 65 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCChhHhEEEE--EE-ECCEEEEEEEEECCCChhh-----------hHHH
Confidence 379999999999999999998765422 1111111111111 11 233 46789999997542 1222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHh-------cccccCeEEEEEeCCCCCCC---ChhhHHHHHccc-C
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLF-------GKKIFDYMIVVFTGGDELED---NDETLEDYLGRE-C 165 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~-------g~~~~~~~ivv~~k~D~~~~---~~~~~~~~~~~~-~ 165 (253)
..++..+|++|+|+|++++-+... ..+++.+.... ......|++||+||+|.... ....+..++... .
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~ 145 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDEN 145 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCC
Confidence 344567899999999986544433 33444444321 01234689999999998631 123344444321 1
Q ss_pred CchhhhhHHHhhhHHHHHH
Q 025391 166 PKPLKKGATKLRDQQFEVD 184 (253)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~ 184 (253)
..++..+......+++++.
T Consensus 146 ~~~~evSAktg~gI~elf~ 164 (247)
T cd04143 146 CAYFEVSAKKNSNLDEMFR 164 (247)
T ss_pred CEEEEEeCCCCCCHHHHHH
Confidence 2344444444444444443
No 179
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.50 E-value=5.3e-13 Score=124.35 Aligned_cols=117 Identities=15% Similarity=0.212 Sum_probs=82.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee---CCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (253)
.+.++|+|+|+.|+|||||+++|++...... ..++.|.....+..... .+..++||||||+. .+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe-----------~F 308 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE-----------AF 308 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHH-----------HH
Confidence 4558999999999999999999988755322 22344444333333321 35789999999973 33
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.......+..+|++|+|+++++...+.....+..+.. . ..|++|++||+|...
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-~----~iPiIVViNKiDl~~ 361 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-A----NVPIIVAINKIDKAN 361 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-c----CceEEEEEECCCccc
Confidence 3444455577899999999987777777666665543 2 258999999999875
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.50 E-value=5.8e-13 Score=125.13 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=86.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
..+.++|+|+|+.++|||||+++|.+..+... ..+++|.....+.+. +.+..++||||||+.++. .
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~-~~~~~ItfiDTPGhe~F~-----------~ 352 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVE-TNGGKITFLDTPGHEAFT-----------A 352 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEE-ECCEEEEEEECCCCccch-----------h
Confidence 34668999999999999999999987665322 234566666555555 367889999999987643 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+....+..+|++|+|+++++...+.....+..+.. ++ .|++|++||+|...
T Consensus 353 m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-~~----vPiIVviNKiDl~~ 403 (787)
T PRK05306 353 MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-AG----VPIIVAINKIDKPG 403 (787)
T ss_pred HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-cC----CcEEEEEECccccc
Confidence 33344567799999999987777777666655443 22 47999999999964
No 181
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.50 E-value=1.7e-12 Score=106.22 Aligned_cols=138 Identities=17% Similarity=0.174 Sum_probs=84.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCC--CCc----------ccee-----------------------------
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--SSG----------VTST----------------------------- 57 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~--~~~----------~t~~----------------------------- 57 (253)
.+.|++||++|+||||++++|+|...++.+.. +.- ....
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~ 105 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTG 105 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcC
Confidence 36899999999999999999999853222211 000 0000
Q ss_pred --------eeeeeeEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCCc-cEEEEEEeCCCCCCHHH-HHHH
Q 025391 58 --------CEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEE-EAAL 125 (253)
Q Consensus 58 --------~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~l~v~d~~~~~~~~~-~~~l 125 (253)
.-...+.......++++||||+...... .......+...+..+...+ +.+|+|++++..+...+ ..+.
T Consensus 106 ~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia 185 (240)
T smart00053 106 TNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLA 185 (240)
T ss_pred CCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHH
Confidence 0000011112357999999999754221 2334456666666666644 58888889876777665 4555
Q ss_pred HHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHc
Q 025391 126 HSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (253)
Q Consensus 126 ~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~ 162 (253)
+++... ..++++|+||.|.... +..+.+.+.
T Consensus 186 ~~ld~~-----~~rti~ViTK~D~~~~-~~~~~~~~~ 216 (240)
T smart00053 186 KEVDPQ-----GERTIGVITKLDLMDE-GTDARDILE 216 (240)
T ss_pred HHHHHc-----CCcEEEEEECCCCCCc-cHHHHHHHh
Confidence 555442 3579999999999863 223555554
No 182
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.50 E-value=1.2e-13 Score=107.60 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=72.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCcccee--------------------------------------------
Q 025391 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-------------------------------------------- 57 (253)
Q Consensus 22 i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~-------------------------------------------- 57 (253)
|+++|..++|||||+|+|+|....+.+..+......
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999999865555432211000
Q ss_pred ---------eeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHH
Q 025391 58 ---------CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSL 128 (253)
Q Consensus 58 ---------~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l 128 (253)
.............+.|+||||+.+...... ..+..+.+..|++|+|++++..++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence 000111111234689999999976433222 3344444778999999999877776665555544
Q ss_pred HHHhcccccCeEEEEEeCC
Q 025391 129 QTLFGKKIFDYMIVVFTGG 147 (253)
Q Consensus 129 ~~~~g~~~~~~~ivv~~k~ 147 (253)
..... ..+++|+||+
T Consensus 154 ~~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDK----SRTIFVLNKA 168 (168)
T ss_dssp HTTTC----SSEEEEEE-G
T ss_pred hcCCC----CeEEEEEcCC
Confidence 44322 3589999884
No 183
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.50 E-value=4.6e-13 Score=107.25 Aligned_cols=115 Identities=22% Similarity=0.233 Sum_probs=72.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
+|+++|.+|+|||||++.+++....... .+...... ...+. ..+ ..+.+|||||...+ .....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~-~~t~~~~~--~~~~~-~~~~~~~l~i~D~~G~~~~-----------~~~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKY-RRTVEEMH--RKEYE-VGGVSLTLDILDTSGSYSF-----------PAMRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC-CCchhhhe--eEEEE-ECCEEEEEEEEECCCchhh-----------hHHHH
Confidence 5899999999999999999987542211 11111111 11122 233 57889999997542 22333
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++..+|++|+|+|+++..+... ..++..+..... ....|+++|+||.|...
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE 118 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence 45678899999999985444333 233334444322 22368999999999864
No 184
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.49 E-value=1.9e-13 Score=105.52 Aligned_cols=150 Identities=18% Similarity=0.152 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
||+++|+.|+|||||++.+.+.........+.+........... .....+.+||+||.... .......
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~-----------~~~~~~~ 68 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSID-GKPVNLEIWDTSGQERF-----------DSLRDIF 68 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEET-TEEEEEEEEEETTSGGG-----------HHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccc-ccccccccccccccccc-----------ccccccc
Confidence 69999999999999999999875432222222222222111111 12346889999996431 1223345
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC---hhhHHHHHcccCCchhhhhHHHh
Q 025391 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGATKL 176 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 176 (253)
+.++|++|+|+|++++-+... ..++..+....+. ..|++||.||.|..... ......+.......+++.+....
T Consensus 69 ~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~--~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 146 (162)
T PF00071_consen 69 YRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPE--DIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNG 146 (162)
T ss_dssp HTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTT--TSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTT
T ss_pred ccccccccccccccccccccccccccccccccccc--cccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCC
Confidence 678899999999985444333 4555555555441 35899999999987411 22344555544445555554444
Q ss_pred hhHHHHHH
Q 025391 177 RDQQFEVD 184 (253)
Q Consensus 177 ~~~~~~~~ 184 (253)
..+...+.
T Consensus 147 ~~v~~~f~ 154 (162)
T PF00071_consen 147 ENVKEIFQ 154 (162)
T ss_dssp TTHHHHHH
T ss_pred CCHHHHHH
Confidence 45544443
No 185
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.48 E-value=5e-13 Score=104.11 Aligned_cols=117 Identities=20% Similarity=0.156 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.+|+++|.+|+|||||++++++...... ..+..... ....... .....+.+|||||...+. ....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~-~~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIES-YDPTIEDS--YRKQVEIDGRQCDLEILDTAGTEQFT-----------AMRE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCcchhe--EEEEEEECCEEEEEEEEeCCCcccch-----------hhhH
Confidence 6899999999999999999997754222 11111111 1111111 123577899999986532 3334
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++.+++++++|++++++-+... ..+...+..... ....|+++++||.|...
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLED 120 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccc
Confidence 45567799999999885444333 333444444332 22468999999999864
No 186
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.47 E-value=5.6e-13 Score=109.67 Aligned_cols=129 Identities=19% Similarity=0.199 Sum_probs=91.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-VGKEIVK 95 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~-~~~~~~~ 95 (253)
...+.|++||.+++|||||.|.+.|..+++.. ....|+.+....+...+...++|+||||+......... ....+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS--~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS--RKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcccccc--ccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 34589999999999999999999999985543 34455555555555557789999999999865543221 1222233
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+.+...+|.+++|+|+++.-......++..+.++.. .|.++|.||.|.+.
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k 199 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLK 199 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcch
Confidence 34555677899999999975333334556666666532 37999999999985
No 187
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.47 E-value=8.4e-13 Score=103.21 Aligned_cols=113 Identities=19% Similarity=0.099 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeee-eeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
++|+++|++|+|||||++.+++........ .+....+ ..+. ..+ ..+.+|||||...+.. .
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~----~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~-----------~ 64 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYV----PTVFDHYAVSVT-VGGKQYLLGLYDTAGQEDYDR-----------L 64 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC----CceeeeeEEEEE-ECCEEEEEEEEeCCCcccccc-----------c
Confidence 489999999999999999998875422211 1111111 1122 233 3577999999865431 2
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....+.+.|++++|++.+++-+... ..++..+... ....|+++|+||.|...
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRD 118 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhc
Confidence 2245678899999999985544433 2344555443 22368999999999864
No 188
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.47 E-value=6.8e-13 Score=103.84 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.+|+++|++|+|||||++.+++............... ...+... ....+.+|||||..... ....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY---VADIEVDGKQVELALWDTAGQEDYD-----------RLRP 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce---EEEEEECCEEEEEEEEeCCCchhhh-----------hccc
Confidence 5899999999999999999998654222111111111 1112211 23467899999975321 2223
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+.+.|++++|++++++-+... ..++..+....+ ..|+++|.||.|...
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 119 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRN 119 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhccc
Confidence 44578899999999985543333 223444443322 358999999999864
No 189
>PRK12735 elongation factor Tu; Reviewed
Probab=99.47 E-value=1e-12 Score=116.02 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=80.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcc--------------ccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (253)
.+..+|+++|+.++|||||+++|++..... ......+.|......... .++..++++||||+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-~~~~~i~~iDtPGh~-- 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-TANRHYAHVDCPGHA-- 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-CCCcEEEEEECCCHH--
Confidence 345899999999999999999999631100 001134566665444443 356789999999973
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+..........+|++++|+|+...........+..+.. .|. +++++++||+|...
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi---~~iivvvNK~Dl~~ 142 (396)
T PRK12735 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV---PYIVVFLNKCDMVD 142 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC---CeEEEEEEecCCcc
Confidence 333333344567899999999987777777767665543 342 23556899999974
No 190
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.46 E-value=1.6e-12 Score=109.11 Aligned_cols=114 Identities=25% Similarity=0.307 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcccc--CCC--------------CccceeeeeeeeEeeCCeEEEEEeCCCCCCCCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSR--ASS--------------SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~--~~~--------------~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (253)
+|+|+|++|+|||||+++|++....... ... .+.+......... +.+..+++|||||..++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLE-WKGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEE-ECCEEEEEEECcCHHHH--
Confidence 5899999999999999999864321110 000 1222223333333 46789999999998532
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
......++..+|++++|++++..........++.+... + .|.++++||+|...
T Consensus 78 ---------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-~----~p~iivvNK~D~~~ 130 (268)
T cd04170 78 ---------VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA-G----IPRIIFINKMDRER 130 (268)
T ss_pred ---------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCccCC
Confidence 12233344566999999999877776666666655432 3 47999999999875
No 191
>COG2262 HflX GTPases [General function prediction only]
Probab=99.46 E-value=1.7e-12 Score=111.07 Aligned_cols=129 Identities=23% Similarity=0.194 Sum_probs=86.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...+.|+|+|.++||||||+|+|+|...+... .-..|.......+...++..+.+.||-||.+.-. ..+..-+.+-
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d--~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP--~~LV~AFksT 265 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVAD--QLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLP--HPLVEAFKST 265 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccc--cccccccCceeEEEeCCCceEEEecCccCcccCC--hHHHHHHHHH
Confidence 45589999999999999999999998764332 3334555555555555689999999999986332 2222333333
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+... ..+|.+|.|+|++++.-.........+..-.|-. ..|+++|+||.|.+.
T Consensus 266 LEE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~-~~p~i~v~NKiD~~~ 318 (411)
T COG2262 266 LEEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD-EIPIILVLNKIDLLE 318 (411)
T ss_pred HHHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCC-CCCEEEEEecccccC
Confidence 3332 5679999999998663333333333333333322 269999999999987
No 192
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.46 E-value=1e-12 Score=106.82 Aligned_cols=115 Identities=22% Similarity=0.313 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccC--------------CCCccceeeeeeeeEee---------CCeEEEEEeC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK---------DGQVVNVIDT 76 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------~~~~~~liDt 76 (253)
++|+++|+.++|||||+++|+......... ...+.|.........+. .+..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 479999999999999999998654211100 01233333322222221 1567899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
||+.++. .....++..+|++++|+|++...+......++..... + .|+++++||+|..
T Consensus 81 PG~~~f~-----------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~----~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFS-----------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-R----VKPVLVINKIDRL 138 (222)
T ss_pred CCccccH-----------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence 9997643 3334445677999999999988888777676655442 2 3799999999986
No 193
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.46 E-value=2e-12 Score=98.43 Aligned_cols=116 Identities=23% Similarity=0.243 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|.+|+|||||++.|++... .... ..+.+......... ..+ ..+.+|||||..+.. ...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~~-----------~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITEY-KPGTTRNYVTTVIE-EDGKTYKFNLLDTAGQEDYR-----------AIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-cCcC-CCCceeeeeEEEEE-ECCEEEEEEEEECCCcccch-----------HHH
Confidence 6999999999999999999999873 2222 22333333332233 345 678899999964421 222
Q ss_pred HhhcCCccEEEEEEeCCCC-CCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSR-FSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~-~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.......+++++++|.... .+... ......+...... ..|+++++||.|...
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRD 122 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCc
Confidence 2333455677777777544 22222 2333444443221 358999999999975
No 194
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.46 E-value=1.1e-12 Score=120.12 Aligned_cols=116 Identities=17% Similarity=0.221 Sum_probs=78.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee-----------------CCeEEEEEeCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLF 80 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtpG~~ 80 (253)
+.+.|+++|+.++|||||+|+|++...... .+++.|.+.....+... ....+.+|||||+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 346899999999999999999998865322 22333332222111110 01248899999974
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
. +.......+..+|++++|+|+++...+.+...+..+... + .|+++++||+|...
T Consensus 81 ~-----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-~----vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 81 A-----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-K----TPFVVAANKIDRIP 135 (590)
T ss_pred h-----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-C----CCEEEEEECCCccc
Confidence 3 223334455788999999999877777777777665542 2 47999999999874
No 195
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.46 E-value=1.6e-12 Score=105.40 Aligned_cols=119 Identities=20% Similarity=0.111 Sum_probs=71.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHH-HhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNS-ILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~-l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
.+..+|+++|++|+|||||++. +.|... .....+.+.......... ......+.+|||||...+ ..
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~i~i~~~Dt~g~~~~-----------~~ 73 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFE-KKYIPTLGVEVHPLKFYT-NCGPICFNVWDTAGQEKF-----------GG 73 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEE-CCeEEEEEEEECCCchhh-----------hh
Confidence 3458999999999999999975 444421 111112222221111111 123467889999996432 12
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++...+++++|+|++++.+... ..++..+..... ..|+++++||+|...
T Consensus 74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 74 LRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVKD 127 (215)
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccCcc
Confidence 22344567799999999986665544 334444444322 247889999999753
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.45 E-value=9.2e-13 Score=117.48 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccc--------------c---------------CCCCccceeeeeeeeEeeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMQRTVLKDG 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~ 68 (253)
+.++|+++|+.++|||||++.|++...... + ....+.|.......+. .++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~-~~~ 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE-TDK 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe-cCC
Confidence 458999999999999999999985432211 0 0135667777666665 367
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccCeEEEEEeC
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~--~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k 146 (253)
..+.+|||||+.++. ..+......+|++|+|+|+++ .+.......+..+.. ++. ++++|++||
T Consensus 84 ~~i~liDtpG~~~~~-----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivviNK 148 (425)
T PRK12317 84 YYFTIVDCPGHRDFV-----------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAINK 148 (425)
T ss_pred eEEEEEECCCcccch-----------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEEEc
Confidence 899999999975432 112222467899999999987 555555555555443 342 368999999
Q ss_pred CCCCC
Q 025391 147 GDELE 151 (253)
Q Consensus 147 ~D~~~ 151 (253)
+|...
T Consensus 149 ~Dl~~ 153 (425)
T PRK12317 149 MDAVN 153 (425)
T ss_pred ccccc
Confidence 99874
No 197
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.45 E-value=9e-13 Score=105.64 Aligned_cols=108 Identities=17% Similarity=0.040 Sum_probs=71.1
Q ss_pred EcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeee--eeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc
Q 025391 25 VGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (253)
Q Consensus 25 vG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (253)
||..|+|||||+++++..... .. ...|...... .+.. .....+.+|||||... +..+...++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~~---~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-----------~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KK---YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-----------FGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-CC---CCCceeEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHHHh
Confidence 699999999999999865431 11 1122222221 1111 1346889999999843 334555677
Q ss_pred CCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 102 ~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
.++|++|+|+|++++.+... ..++..+.+.. ...|+++|+||+|..
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~ 112 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVK 112 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccc
Confidence 89999999999997666554 34455555542 235899999999975
No 198
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.45 E-value=6.8e-13 Score=119.86 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=56.4
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHcccCCchhhhhHHHhhhH
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ 179 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (253)
.+..|| +|++++||++++.....||+.....+. .++||+||++.+. +..+..++..+.++
T Consensus 168 L~~~pD-lLLLDEPTNHLD~~~i~WLe~~L~~~~-----gtviiVSHDR~FL--d~V~t~I~~ld~g~------------ 227 (530)
T COG0488 168 LLEEPD-LLLLDEPTNHLDLESIEWLEDYLKRYP-----GTVIVVSHDRYFL--DNVATHILELDRGK------------ 227 (530)
T ss_pred HhcCCC-EEEEcCCCcccCHHHHHHHHHHHHhCC-----CcEEEEeCCHHHH--HHHhhheEEecCCc------------
Confidence 345565 677889999999998888876665442 4899999999998 88888888876665
Q ss_pred HHHHHHcCC-CCHHHHHHHH
Q 025391 180 QFEVDSLKG-YSKREISELK 198 (253)
Q Consensus 180 ~~~~~~~~g-y~~~~~~~~~ 198 (253)
+..++| |+.+..++..
T Consensus 228 ---l~~y~Gny~~~~~~r~~ 244 (530)
T COG0488 228 ---LTPYKGNYSSYLEQKAE 244 (530)
T ss_pred ---eeEecCCHHHHHHHHHH
Confidence 566666 7766555443
No 199
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.45 E-value=3e-12 Score=118.30 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=83.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccc-cCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.|+++|+.++|||||+++|+|...... .....++|....+......++..+.+|||||+. .+......
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----------~fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----------KFLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----------HHHHHHHH
Confidence 689999999999999999998642111 112346777666555544456788999999973 23333334
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++|++++|+|++....+.+...+..+.. +|. ++++||+||+|...
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv~ 118 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGN---PMLTVALTKADRVD 118 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCccCC
Confidence 4578899999999988888888888776544 342 24689999999975
No 200
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.44 E-value=2e-12 Score=96.91 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=86.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
...||.++|..||||||+++.++|... ....+|....+....+ ++..+++||..|. ..++.++
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq-----------~~lr~~W 77 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQ-----------KTLRSYW 77 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCc-----------chhHHHH
Confidence 458999999999999999999999863 3344566666666664 7889999999997 5677888
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~ 151 (253)
..+|...|++|+|+|..++....+ ....+.+.+... +..+++|+.||.|...
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence 999999999999999876666555 222233222211 3358999999999873
No 201
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.44 E-value=3.8e-12 Score=117.16 Aligned_cols=115 Identities=22% Similarity=0.267 Sum_probs=82.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccc-cCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.|+++|+.++|||||+++|+|...... .....++|....+..+.. .+..+.+|||||+. .+......
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe-----------~f~~~~~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHE-----------KFISNAIA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHH-----------HHHHHHHh
Confidence 699999999999999999998542111 112345666666655554 56889999999963 33344444
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+.++|++++|+|+++...+.....+..+.. +|- ++++||+||+|...
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVN 117 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCC
Confidence 5578899999999987777777766665543 342 24999999999976
No 202
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.44 E-value=1.9e-12 Score=97.45 Aligned_cols=116 Identities=20% Similarity=0.155 Sum_probs=69.8
Q ss_pred EEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCC
Q 025391 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG 103 (253)
Q Consensus 24 lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (253)
++|++|+|||||+|.|++.........+............. ..+..+.+||+||..... .......+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~-----------~~~~~~~~~ 68 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVD-GKKVKLQIWDTAGQERFR-----------SLRRLYYRG 68 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEEC-CEEEEEEEEecCChHHHH-----------hHHHHHhcC
Confidence 58999999999999999876521221111111111111111 125689999999986422 222445578
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 104 ~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+|++++|+|++...+....................|+++|+||.|...
T Consensus 69 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 69 ADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 899999999985444444332211111111233468999999999986
No 203
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.44 E-value=2.2e-12 Score=103.07 Aligned_cols=116 Identities=18% Similarity=0.030 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCCHHHHHH-HHhCCCCcccc-CCCCccceee-e-ee-e---------eEeeCCeEEEEEeCCCCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGN-SILGRRAFKSR-ASSSGVTSTC-E-MQ-R---------TVLKDGQVVNVIDTPGLFDFSAG 85 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n-~l~g~~~~~~~-~~~~~~t~~~-~-~~-~---------~~~~~~~~~~liDtpG~~~~~~~ 85 (253)
.+|+++|..|+|||||+. .+.+....... .....+|... . +. . ........+.+|||||....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 699999999999999996 55443211010 0111122210 0 00 0 01112457889999998531
Q ss_pred cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....+++++|++|+|+|++++.+.... .++..+..... ..|+++|.||.|+..
T Consensus 80 ----------~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~~ 134 (195)
T cd01873 80 ----------DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLRY 134 (195)
T ss_pred ----------hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccc
Confidence 112467899999999999877666553 35565655432 358999999999753
No 204
>PRK12736 elongation factor Tu; Reviewed
Probab=99.44 E-value=2.4e-12 Score=113.54 Aligned_cols=118 Identities=14% Similarity=0.211 Sum_probs=81.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccc--------------cCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (253)
+..+|+++|+.++|||||+++|++...... .....+.|.......+. .++..+.+|||||+.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~-~~~~~i~~iDtPGh~--- 86 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE-TEKRHYAHVDCPGHA--- 86 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-CCCcEEEEEECCCHH---
Confidence 448999999999999999999987421100 01134566665444433 256789999999963
Q ss_pred CCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++..........+|++++|+|++......+...+..+... |. +++++++||+|...
T Consensus 87 --------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~---~~~IvviNK~D~~~ 142 (394)
T PRK12736 87 --------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV---PYLVVFLNKVDLVD 142 (394)
T ss_pred --------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC---CEEEEEEEecCCcc
Confidence 2223333334677999999999877888888888776553 42 24778999999874
No 205
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.43 E-value=1.4e-12 Score=105.78 Aligned_cols=115 Identities=21% Similarity=0.281 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCcccc-----------------CCCCccceeeeeeeeEe----eCCeEEEEEeCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------ASSSGVTSTCEMQRTVL----KDGQVVNVIDTPG 78 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-----------------~~~~~~t~~~~~~~~~~----~~~~~~~liDtpG 78 (253)
++|+++|+.|+|||||+++|++....... ....+.+.......... .....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 36999999999999999999875432210 00112332222222211 1246789999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
..++. .....++..+|++++|+|++...+.....+++.+... + .|+++|+||+|.+
T Consensus 81 ~~~f~-----------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFM-----------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE-G----LPIVLVINKIDRL 136 (213)
T ss_pred CcchH-----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccC
Confidence 87542 2233344567999999999877766655554443321 2 4799999999987
No 206
>PRK00049 elongation factor Tu; Reviewed
Probab=99.43 E-value=4.2e-12 Score=112.03 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccc--------------cCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (253)
+..+|+++|+.++|||||+++|++...... .....+.|......... .++..++++||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~--- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-TEKRHYAHVDCPGHA--- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-CCCeEEEEEECCCHH---
Confidence 448999999999999999999997421000 01134556555444433 356789999999973
Q ss_pred CCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeE-EEEEeCCCCCC
Q 025391 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM-IVVFTGGDELE 151 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~-ivv~~k~D~~~ 151 (253)
.+..........+|++++|+|+.......+...+..+... +. |. ++++||+|...
T Consensus 87 --------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~ 142 (396)
T PRK00049 87 --------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVD 142 (396)
T ss_pred --------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcc
Confidence 3333344445788999999999878888888888776653 42 45 46899999974
No 207
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.43 E-value=1.8e-12 Score=101.88 Aligned_cols=127 Identities=15% Similarity=0.189 Sum_probs=84.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
....+|+++|..||||||+++.|....... ..+|.......+.. .+..+.+||.+|... ++..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~-----------~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQES-----------FRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGG-----------GGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEecccccc-----------cccc
Confidence 456899999999999999999998754322 22233344444443 788999999999732 3355
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCC-ChhhHHHHHc
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED-NDETLEDYLG 162 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~~-~~~~~~~~~~ 162 (253)
+..+++++|++|||+|.+++-... +..+.+...+... ...|++|++||.|.... ....+..++.
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~l~--e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~ 141 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPERLQ--EAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLG 141 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGGHH--HHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTT
T ss_pred ceeeccccceeEEEEecccceeec--ccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhh
Confidence 667788999999999987433222 2233333433322 24699999999998642 1334444443
No 208
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.42 E-value=2.9e-12 Score=113.08 Aligned_cols=119 Identities=16% Similarity=0.229 Sum_probs=81.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCC------cc----cc----CCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRA------FK----SR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~------~~----~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (253)
.+..+|+++|+.++|||||+++|++... +. .. ....+.|......... ..+..+.+|||||+.+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-~~~~~~~liDtpGh~~- 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHAD- 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-CCCEEEEEEECCchHH-
Confidence 4558999999999999999999985311 00 00 1124566665444443 3567899999999843
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+..........+|++++|+|++......+...+..+... +. +++++++||+|...
T Consensus 88 ----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 88 ----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVD 142 (394)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCC
Confidence 222222333577999999999877777777777776543 42 24567899999875
No 209
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.42 E-value=2.6e-12 Score=115.55 Aligned_cols=126 Identities=12% Similarity=0.153 Sum_probs=84.1
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc--------------C-----------------CCCccceee
Q 025391 10 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------A-----------------SSSGVTSTC 58 (253)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~--------------~-----------------~~~~~t~~~ 58 (253)
|...+...+.++|+++|+.++|||||++.|+........ . ...++|...
T Consensus 18 ~~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~ 97 (474)
T PRK05124 18 YLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDV 97 (474)
T ss_pred HHhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEe
Confidence 333444566699999999999999999999866432111 0 013455666
Q ss_pred eeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccC
Q 025391 59 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD 138 (253)
Q Consensus 59 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~ 138 (253)
...... .++..+++|||||+.+ +..........+|++|+|+|++......+...+..+.. ++. +
T Consensus 98 ~~~~~~-~~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~ 161 (474)
T PRK05124 98 AYRYFS-TEKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---K 161 (474)
T ss_pred eEEEec-cCCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---C
Confidence 555554 3677899999999632 22222223477899999999987776655554444333 342 3
Q ss_pred eEEEEEeCCCCCC
Q 025391 139 YMIVVFTGGDELE 151 (253)
Q Consensus 139 ~~ivv~~k~D~~~ 151 (253)
+++|++||+|...
T Consensus 162 ~iIvvvNKiD~~~ 174 (474)
T PRK05124 162 HLVVAVNKMDLVD 174 (474)
T ss_pred ceEEEEEeecccc
Confidence 7899999999974
No 210
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.41 E-value=3.7e-13 Score=117.15 Aligned_cols=134 Identities=21% Similarity=0.235 Sum_probs=95.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHH
Q 025391 11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG 90 (253)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 90 (253)
++++.+....+++|||.+++|||||+|.++...+ ...+...|+..-+......+..+|.++||||+.+.......+.
T Consensus 160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~I 236 (620)
T KOG1490|consen 160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNII 236 (620)
T ss_pred cCCCCCCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHH
Confidence 4678888889999999999999999999987764 4556667777666665556788999999999987543222221
Q ss_pred HHHHHHHHhhcCCccEEEEEEeCCCCCC--HHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 91 KEIVKCIGMAKDGIHAVLVVFSVRSRFS--QEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~--~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
++ ..+.....-..++||++|++..|. ..+ ..+...++..|.. +++|+|+||+|.+..
T Consensus 237 -Em-qsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 237 -EM-QIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRP 296 (620)
T ss_pred -HH-HHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCc
Confidence 11 222222233358999999975544 333 4555667777754 589999999999853
No 211
>PRK09866 hypothetical protein; Provisional
Probab=99.41 E-value=5.6e-12 Score=114.00 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=53.6
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
..++++||||+...... .+...+.. ....+|++|||+|++...+..+..+++.+.+. +. ..|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~~--~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP--HLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccch--HHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEEccc
Confidence 47899999999854321 12222332 45677999999999877888888888887764 32 137999999999
Q ss_pred CCC
Q 025391 149 ELE 151 (253)
Q Consensus 149 ~~~ 151 (253)
...
T Consensus 301 l~d 303 (741)
T PRK09866 301 QQD 303 (741)
T ss_pred CCC
Confidence 874
No 212
>PLN03127 Elongation factor Tu; Provisional
Probab=99.41 E-value=4.7e-12 Score=113.02 Aligned_cols=120 Identities=15% Similarity=0.197 Sum_probs=82.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCC------c----cc----cCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRA------F----KS----RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~------~----~~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (253)
..+..+|+++|+.++|||||++.|++... . .. .....+.|.......+.. ++..++++||||+.+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHAD 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccc
Confidence 34558999999999999999999974310 0 00 011246666665555443 567899999999853
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+ +...+. ....+|++++|+|++......+...+..+... |. +.+++++||+|...
T Consensus 137 f----------~~~~~~-g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gi---p~iIvviNKiDlv~ 191 (447)
T PLN03127 137 Y----------VKNMIT-GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GV---PSLVVFLNKVDVVD 191 (447)
T ss_pred h----------HHHHHH-HHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC---CeEEEEEEeeccCC
Confidence 1 222222 22458999999999878888888888776653 42 13678899999975
No 213
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.41 E-value=4.3e-12 Score=119.72 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~ 97 (253)
.+|+++|.+|+|||||+|.|+|..... +. ..+.|......... ..+..+.++||||..+...... ...+.+.+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~v-gn-~pGvTve~k~g~~~-~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~- 79 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRV-GN-WAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH- 79 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcc-CC-CCCceEeeEEEEEE-cCceEEEEEECCCccccccccccccHHHHHHHH-
Confidence 689999999999999999999986532 22 24566655555444 4677899999999987653211 111222222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
......+|++++|+|+++ +... ..+...+.+. | .|+++++||+|...
T Consensus 80 ~l~~~~aD~vI~VvDat~-ler~-l~l~~ql~e~-g----iPvIvVlNK~Dl~~ 126 (772)
T PRK09554 80 YILSGDADLLINVVDASN-LERN-LYLTLQLLEL-G----IPCIVALNMLDIAE 126 (772)
T ss_pred HHhccCCCEEEEEecCCc-chhh-HHHHHHHHHc-C----CCEEEEEEchhhhh
Confidence 122357899999999984 3332 2233344332 3 58999999999874
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.41 E-value=5e-12 Score=116.19 Aligned_cols=116 Identities=18% Similarity=0.215 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee-----------------CCeEEEEEeCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGL 79 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtpG~ 79 (253)
.+++.|+++|+.|+|||||+|+|.|...... .+++.|.+......+.. .-..+++|||||+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~--~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAK--EAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccC--CCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 3457999999999999999999998754222 22333322221111100 0013789999998
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
.++ ..........+|++++|+|+++.+.+.....+..+... ..|+++++||+|..
T Consensus 82 e~f-----------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~ 136 (586)
T PRK04004 82 EAF-----------TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-----KTPFVVAANKIDRI 136 (586)
T ss_pred HHH-----------HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence 543 22333344678999999999877777777777665442 24799999999986
No 215
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.40 E-value=9.3e-12 Score=101.03 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+|+++|+.|+|||||++++.+...........+ ................+.+|||+|+ .++......
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~~~Dt~gq-----------~~~~~~~~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIG-NLDPAKTIEPYRRNIKLQLWDTAGQ-----------EEYRSLRPE 73 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCcee-eeeEEEEEEeCCCEEEEEeecCCCH-----------HHHHHHHHH
Confidence 7999999999999999999998865433221111 1111111111111456889999998 556677778
Q ss_pred hcCCccEEEEEEeCCCCCC--HHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFS--QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~--~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++.++++++++++.+..-+ .....+...+....+ ...|+++|.||.|...
T Consensus 74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFD 125 (219)
T ss_pred HhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEeccccccc
Confidence 8899999999999874222 222444444454432 1358999999999997
No 216
>PLN03126 Elongation factor Tu; Provisional
Probab=99.40 E-value=3.8e-12 Score=114.20 Aligned_cols=119 Identities=15% Similarity=0.203 Sum_probs=83.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcc--------------ccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (253)
.+.++|+++|+.++|||||++.|++..... ......+.|.......+. .++..+++|||||+.+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~~i~liDtPGh~~- 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGHAD- 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-cCCcEEEEEECCCHHH-
Confidence 455899999999999999999999632110 111234556655555444 3678999999999842
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+..........+|++++|+|+........+..+..+... |. +++++++||+|...
T Consensus 157 ----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 157 ----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVD 211 (478)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEecccccC
Confidence 323333334578999999999878888887777765543 43 24788999999975
No 217
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.40 E-value=7.9e-12 Score=114.98 Aligned_cols=115 Identities=21% Similarity=0.327 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCC-ccc-c------------CCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRA-FKS-R------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~-~~~-~------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (253)
++|+|+|+.++|||||++.|+.... +.. + ....++|.......+. +++..+++|||||+.++.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~-~~~~kinlIDTPGh~DF~-- 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR-YNGTKINIVDTPGHADFG-- 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE-ECCEEEEEEECCCHHHHH--
Confidence 5899999999999999999985421 101 0 1123566666666565 478999999999986532
Q ss_pred cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+..++..+|++++|+|++.........++..+... + .|.+|++||+|...
T Consensus 79 ---------~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~----ip~IVviNKiD~~~ 130 (594)
T TIGR01394 79 ---------GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-G----LKPIVVINKIDRPS 130 (594)
T ss_pred ---------HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-C----CCEEEEEECCCCCC
Confidence 2333444567999999999877777777777666552 3 36899999999864
No 218
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.40 E-value=6.1e-12 Score=118.36 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=84.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccc---cCC-------------CCccceeeeeeeeEeeCCeEEEEEeCCCC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS---RAS-------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~---~~~-------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (253)
....++|+|+|+.++|||||+|+|++...... ... ..++|.......+. +++..+++|||||+
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~-~~~~~i~liDTPG~ 85 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF-WKGHRINIIDTPGH 85 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE-ECCeEEEEEECCCC
Confidence 34457999999999999999999975332110 000 23556666555555 47889999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++.. .+..++..+|++++|+|++......+..++..+... + .|+++++||+|...
T Consensus 86 ~~~~~-----------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~ 141 (689)
T TIGR00484 86 VDFTV-----------EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-E----VPRIAFVNKMDKTG 141 (689)
T ss_pred cchhH-----------HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-C----CCEEEEEECCCCCC
Confidence 76431 122334556999999999888887777777665543 2 47899999999985
No 219
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.40 E-value=3.1e-12 Score=101.49 Aligned_cols=113 Identities=19% Similarity=0.128 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+|+|++|+|||||++.|+....... .. .|....+.......+ ..+.+|||||...... ..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~-~~---~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-----------~~ 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEE-YH---PTVFENYVTDCRVDGKPVQLALWDTAGQEEYER-----------LR 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-cC---CcccceEEEEEEECCEEEEEEEEECCCChhccc-----------cc
Confidence 5899999999999999999985433221 11 121111111111232 4578999999754321 11
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
...+..+|++++++++++.-+... ..++..+....+ ..|+++|.||.|..
T Consensus 67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~ 118 (187)
T cd04129 67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLR 118 (187)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhh
Confidence 234467899999999975544333 235555554433 36899999999974
No 220
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.40 E-value=1.1e-11 Score=101.04 Aligned_cols=113 Identities=20% Similarity=0.157 Sum_probs=74.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCC-------------CCcccee------------------------eeeeee
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRAS-------------SSGVTST------------------------CEMQRT 63 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~-------------~~~~t~~------------------------~~~~~~ 63 (253)
+|+++|+.|+|||||++.+....... +.. ..+.|.. .... .
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~ 78 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDN-GRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIE-I 78 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCC-CCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccce-e
Confidence 58999999999999999998533211 100 0111110 0001 1
Q ss_pred EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc--CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEE
Q 025391 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK--DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141 (253)
Q Consensus 64 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~i 141 (253)
....+..++++||||+.+ +.+...... ..+|++++|++++..+...+...+.++... + .|++
T Consensus 79 ~~~~~~~i~liDtpG~~~-----------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~----ip~i 142 (224)
T cd04165 79 CEKSSKLVTFIDLAGHER-----------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL-N----IPVF 142 (224)
T ss_pred eeeCCcEEEEEECCCcHH-----------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEE
Confidence 113467899999999743 222222222 367999999999888898888888887764 3 3689
Q ss_pred EEEeCCCCCC
Q 025391 142 VVFTGGDELE 151 (253)
Q Consensus 142 vv~~k~D~~~ 151 (253)
+|+||+|...
T Consensus 143 vvvNK~D~~~ 152 (224)
T cd04165 143 VVVTKIDLAP 152 (224)
T ss_pred EEEECccccC
Confidence 9999999875
No 221
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.39 E-value=3.5e-12 Score=103.82 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccc-----------------------------cCCCCccceeeeeeeeEeeCCeEE
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKDGQVV 71 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 71 (253)
+|+++|+.|+|||||+.+|+....... .....+.|.......+. +.+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~-~~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE-TEKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-eCCeEE
Confidence 489999999999999999964321100 01123455555555554 478899
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccCeEEEEE
Q 025391 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (253)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~l~~l~~~~g~~~~~~~ivv~ 144 (253)
.+|||||+.+ +...+......+|++|+|+|+++. ........+.... .++. +|++|++
T Consensus 80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV 144 (219)
T ss_pred EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 9999999742 222222344678999999999853 2223333333332 2332 4789999
Q ss_pred eCCCCCC
Q 025391 145 TGGDELE 151 (253)
Q Consensus 145 ~k~D~~~ 151 (253)
||+|...
T Consensus 145 NK~Dl~~ 151 (219)
T cd01883 145 NKMDDVT 151 (219)
T ss_pred Ecccccc
Confidence 9999984
No 222
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.38 E-value=5.3e-12 Score=104.48 Aligned_cols=126 Identities=20% Similarity=0.155 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
..|+|||-++||||||+|+|+.... .-.....+|....+..+.+.+...++|-|.||+....+.+.-+...+.+.+.+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 3689999999999999999998765 11222334555555555554455699999999998776666677788888877
Q ss_pred hcCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhccc-ccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~--~~~~-~~~l~~l~~~~g~~-~~~~~ivv~~k~D~~~ 151 (253)
| ..++||+|+.... ++-+ .+.|..=.+.+... ..+|.+||.||+|..+
T Consensus 275 ~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e 326 (366)
T KOG1489|consen 275 C----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE 326 (366)
T ss_pred h----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh
Confidence 7 6999999997441 3322 22222212223222 4568999999999964
No 223
>PRK12739 elongation factor G; Reviewed
Probab=99.38 E-value=1e-11 Score=116.79 Aligned_cols=118 Identities=22% Similarity=0.296 Sum_probs=84.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccc--c-C-------------CCCccceeeeeeeeEeeCCeEEEEEeCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS--R-A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~--~-~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (253)
...++|+|+|+.++|||||+++|+....... + . ...++|......... +++..++++||||+.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-ECCEEEEEEcCCCHH
Confidence 3457999999999999999999975321100 0 0 134566666555555 478899999999985
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++ ...+..+...+|++|+|+|+.......+..++..+... + .|.++++||+|...
T Consensus 85 ~f-----------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DF-----------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-G----VPRIVFVNKMDRIG 139 (691)
T ss_pred HH-----------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCC
Confidence 42 12233444566999999999888888888777776553 3 47899999999985
No 224
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.37 E-value=8.7e-12 Score=96.31 Aligned_cols=109 Identities=23% Similarity=0.177 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.+|+++|++|+|||||++.++....... ..+..... ...+. .++ ..+.+|||+|... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~~~~---~~~i~-~~~~~~~l~i~D~~g~~~---------~------ 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEGGRF---KKEVL-VDGQSHLLLIRDEGGAPD---------A------ 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCccce---EEEEE-ECCEEEEEEEEECCCCCc---------h------
Confidence 4799999999999999998776543221 11111111 11122 244 4688999999853 1
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
.++..+|++++|+|.+++-+... ..++..+....+ ....|+++|.||+|..
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~ 112 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS 112 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence 12356799999999997776666 455555554422 1235899999998864
No 225
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.37 E-value=1.3e-11 Score=113.74 Aligned_cols=117 Identities=22% Similarity=0.228 Sum_probs=77.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc------C-------CCCccceeeeeeeeEee--C--CeEEEEEeCCCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR------A-------SSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD 81 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~------~-------~~~~~t~~~~~~~~~~~--~--~~~~~liDtpG~~~ 81 (253)
.++|+|+|+.|+|||||+++|+........ . ...++|.........+. + ...+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 478999999999999999999875321110 0 11255555444433321 2 25789999999965
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+. ..+..++..+|++|+|+|+++..+..+...+..... . ..|+++|+||+|...
T Consensus 83 F~-----------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~----~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 83 FS-----------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-N----DLEIIPVINKIDLPS 136 (595)
T ss_pred HH-----------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c----CCCEEEEEECcCCCc
Confidence 32 333345567799999999987777766544433322 1 247999999999864
No 226
>PRK00007 elongation factor G; Reviewed
Probab=99.37 E-value=1.5e-11 Score=115.68 Aligned_cols=119 Identities=19% Similarity=0.234 Sum_probs=84.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCC---ccccC-------------CCCccceeeeeeeeEeeCCeEEEEEeCCCC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRA---FKSRA-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~---~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (253)
....++|+|+|+.++|||||+++|+.... ..... ...+.|......... +.+..++++||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~-~~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE-ECCeEEEEEeCCCc
Confidence 34558999999999999999999973221 10000 133556655555554 47889999999998
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++. .+ +..+...+|++++|+|+.......+...+..+.+. + .|.++++||+|...
T Consensus 86 ~~f~-------~e----v~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~----~p~iv~vNK~D~~~ 141 (693)
T PRK00007 86 VDFT-------IE----VERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-K----VPRIAFVNKMDRTG 141 (693)
T ss_pred HHHH-------HH----HHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCCCC
Confidence 6422 12 33333455899999999888888888888877664 3 36889999999985
No 227
>PRK10218 GTP-binding protein; Provisional
Probab=99.37 E-value=1.8e-11 Score=112.58 Aligned_cols=116 Identities=21% Similarity=0.271 Sum_probs=83.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCC-cccc-------------CCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (253)
.++|+|+|+.++|||||+++|++... +... ....+.|.......+. +++..+.+|||||+.++.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~-~~~~~inliDTPG~~df~- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK-WNDYRINIVDTPGHADFG- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe-cCCEEEEEEECCCcchhH-
Confidence 47999999999999999999996422 1110 1124556555555555 478899999999987653
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+..++..+|++|+|+|+++.........+..+... + .|.++++||+|...
T Consensus 83 ----------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-g----ip~IVviNKiD~~~ 134 (607)
T PRK10218 83 ----------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-G----LKPIVVINKVDRPG 134 (607)
T ss_pred ----------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-C----CCEEEEEECcCCCC
Confidence 2333445677999999999877777776666665442 3 36899999999864
No 228
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.37 E-value=8.5e-12 Score=110.47 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCcccc-------------------------------CCCCccceeeeeeeeEeeCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-------------------------------ASSSGVTSTCEMQRTVLKDG 68 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~ 68 (253)
++|+++|+.++|||||++.|+........ ....+.|......... +++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~-~~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS-TDK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc-cCC
Confidence 48999999999999999999754321110 0123455666555554 367
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
..+.++||||+.+ +..........+|++|+|+|+.......+...+..+.. ++. ++++|++||+|
T Consensus 80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~-~~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASL-LGI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHH-cCC---CcEEEEEEecc
Confidence 8999999999642 22223334467899999999987777777666655444 342 36899999999
Q ss_pred CCC
Q 025391 149 ELE 151 (253)
Q Consensus 149 ~~~ 151 (253)
...
T Consensus 145 ~~~ 147 (406)
T TIGR02034 145 LVD 147 (406)
T ss_pred ccc
Confidence 974
No 229
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.37 E-value=7.4e-12 Score=116.79 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=81.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccc--------------cC-----------------CCCccceeeeeeee
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMQRT 63 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~ 63 (253)
...+..+|+++|+.++|||||++.|+....... +. ...+.|........
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 444558999999999999999999987543211 00 01244555544444
Q ss_pred EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEE
Q 025391 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 143 (253)
Q Consensus 64 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv 143 (253)
. .++..++++||||+.+ +..........+|++|+|+|++......+...+..+.. ++. ++++|+
T Consensus 100 ~-~~~~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~-~~~---~~iivv 163 (632)
T PRK05506 100 A-TPKRKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASL-LGI---RHVVLA 163 (632)
T ss_pred c-cCCceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHH-hCC---CeEEEE
Confidence 4 3677899999999632 22222234467899999999987777666555555444 342 478899
Q ss_pred EeCCCCCC
Q 025391 144 FTGGDELE 151 (253)
Q Consensus 144 ~~k~D~~~ 151 (253)
+||+|...
T Consensus 164 vNK~D~~~ 171 (632)
T PRK05506 164 VNKMDLVD 171 (632)
T ss_pred EEeccccc
Confidence 99999974
No 230
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.36 E-value=3.4e-12 Score=95.46 Aligned_cols=101 Identities=23% Similarity=0.293 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.||+|||++|+|||||+++|.|... ....|....+. + .+|||||-+--. ..+.+.+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i~~~-----~----~~IDTPGEyiE~-------~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAIEYY-----D----NTIDTPGEYIEN-------PRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC------CcCccceeEec-----c----cEEECChhheeC-------HHHHHHHHH
Confidence 5899999999999999999998753 11223222211 1 359999976321 334445544
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
....+|.+++|.|++++.+.-...+. ..|. +|+|=|+||.|..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa----~~f~----~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFA----SMFN----KPVIGVITKIDLP 102 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhh----cccC----CCEEEEEECccCc
Confidence 45678999999999865554333333 2333 4799999999998
No 231
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.36 E-value=1.9e-11 Score=111.14 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcc--ccCC------------------CCccceeeeeeeeEeeCCeEEEEEeC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK--SRAS------------------SSGVTSTCEMQRTVLKDGQVVNVIDT 76 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDt 76 (253)
...++|+|+|+.|+|||||++.|+...... .+.. ..+.+.......+. +++..+++|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~-~~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFP-YRDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEe-eCCeEEEEEEC
Confidence 455899999999999999999986322111 0000 12344444444444 47889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
||+.++. .....++..+|++|+|+|++..+......+++.+.. . ..|+++++||+|...
T Consensus 88 PG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~----~~PiivviNKiD~~~ 146 (527)
T TIGR00503 88 PGHEDFS-----------EDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-R----DTPIFTFMNKLDRDI 146 (527)
T ss_pred CChhhHH-----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-c----CCCEEEEEECccccC
Confidence 9985432 223334467799999999987777766666654433 2 248999999999864
No 232
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=3.6e-11 Score=92.26 Aligned_cols=130 Identities=17% Similarity=0.239 Sum_probs=97.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccc-----cCCCCc---cceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG 90 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 90 (253)
..+|+++|+.|+||||+++.++-...... .....+ .|+...+.......+..+.++||||+
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq----------- 78 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ----------- 78 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc-----------
Confidence 36999999999999999999987764322 122223 66666777777656689999999998
Q ss_pred HHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC-hhhHHHHHcc
Q 025391 91 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGR 163 (253)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~-~~~~~~~~~~ 163 (253)
.++.-++.....++.++++++|.+...+......+..+..... .|++|..||.|..... ++.+.+++..
T Consensus 79 ~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~ppe~i~e~l~~ 148 (187)
T COG2229 79 ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDALPPEKIREALKL 148 (187)
T ss_pred HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCCCHHHHHHHHHh
Confidence 5566667777789999999999887777777777777766432 5899999999998642 4566677763
No 233
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.36 E-value=1.3e-11 Score=110.10 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=77.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccc--------------c---------------CCCCccceeeeeeeeEeeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMQRTVLKDG 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~ 68 (253)
+.++|+++|+.++|||||++.|+....... + ....+.|.......+. ..+
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-~~~ 84 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-TDK 84 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc-cCC
Confidence 448999999999999999999985321100 0 0123566666665554 367
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC---CCHHHHHHHHHHHHHhcccccCeEEEEEe
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR---FSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~l~~l~~~~g~~~~~~~ivv~~ 145 (253)
..+.+|||||+. .+.......+..+|++++|+|+++. ........+... ..++. .+++|++|
T Consensus 85 ~~i~iiDtpGh~-----------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVviN 149 (426)
T TIGR00483 85 YEVTIVDCPGHR-----------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVAIN 149 (426)
T ss_pred eEEEEEECCCHH-----------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEEEE
Confidence 899999999963 2323333345678999999999866 333333323222 33342 47999999
Q ss_pred CCCCCC
Q 025391 146 GGDELE 151 (253)
Q Consensus 146 k~D~~~ 151 (253)
|+|...
T Consensus 150 K~Dl~~ 155 (426)
T TIGR00483 150 KMDSVN 155 (426)
T ss_pred ChhccC
Confidence 999974
No 234
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=3.1e-11 Score=89.01 Aligned_cols=119 Identities=12% Similarity=0.084 Sum_probs=84.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..++.++|.+.+|||||+.+.++....+.-.++.|+.......... .+..++.+|||.|. +.++....
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~-~kRiklQiwDTagq-----------EryrtiTT 88 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRS-DKRIKLQIWDTAGQ-----------ERYRTITT 88 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeec-ccEEEEEEEecccc-----------hhhhHHHH
Confidence 3699999999999999999999887644444444555444433222 24468999999998 44566677
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++++++++|++.|+++.-+... ..+.-.++.+ .. -..++|+|.||||+-.
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIkty-sw-~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTY-SW-DNAQVILVGNKCDMDS 140 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheee-ec-cCceEEEEecccCCcc
Confidence 88899999999999985544444 3344444433 21 1358999999999975
No 235
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.35 E-value=2.5e-12 Score=110.73 Aligned_cols=117 Identities=21% Similarity=0.210 Sum_probs=68.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCcc---ceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV---TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
..++|+|+|.+|+|||||+|+|.|-..-..+..+.|+ |..... +...+..++++||.||.+......+. +.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~--Y~~p~~pnv~lWDlPG~gt~~f~~~~----Yl 107 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTP--YPHPKFPNVTLWDLPGIGTPNFPPEE----YL 107 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EE--EE-SS-TTEEEEEE--GGGSS--HHH----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCee--CCCCCCCCCeEEeCCCCCCCCCCHHH----HH
Confidence 4589999999999999999999886443333333333 232322 33345668999999999754433332 22
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
.. .-+...|.||++.+ .+++..+..+.+.+.++ | +++++|-||.|.
T Consensus 108 ~~--~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~-g----K~fyfVRTKvD~ 153 (376)
T PF05049_consen 108 KE--VKFYRYDFFIIISS--ERFTENDVQLAKEIQRM-G----KKFYFVRTKVDS 153 (376)
T ss_dssp HH--TTGGG-SEEEEEES--SS--HHHHHHHHHHHHT-T-----EEEEEE--HHH
T ss_pred HH--ccccccCEEEEEeC--CCCchhhHHHHHHHHHc-C----CcEEEEEecccc
Confidence 21 12345587777654 48999999999888875 4 479999999886
No 236
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.33 E-value=2.6e-11 Score=101.49 Aligned_cols=124 Identities=20% Similarity=0.173 Sum_probs=88.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
-|+|||-++||||||++.++.... .-.....+|.......+....+..+++-|.||+.+..+.+.-+..++.+.+.+|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP--KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP--KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC--cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 378999999999999999998765 222333455555555555446778999999999987776666778888888888
Q ss_pred cCCccEEEEEEeCCCCCC---HH-H-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFS---QE-E-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~---~~-~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+++.|+|++ +.+ +. + ..+...+..+-..-..+|.+||+||+|...
T Consensus 239 ----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 239 ----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred ----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 4999999987 333 33 2 333344444322224578999999999664
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.32 E-value=3.9e-11 Score=109.01 Aligned_cols=118 Identities=15% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCc--cccC------------------CCCccceeeeeeeeEeeCCeEEEEEeC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAF--KSRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~--~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (253)
...++|+|+|+.|+|||||++.|+..... ..+. ...+.+.......+. +++..+++|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~-~~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFP-YRDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEE-ECCEEEEEEEC
Confidence 34579999999999999999999632110 0000 011333334334444 47889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
||+.++. .....++..+|++|+|+|+++........+++.... .+ .|+++++||+|...
T Consensus 87 PG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~----iPiiv~iNK~D~~~ 145 (526)
T PRK00741 87 PGHEDFS-----------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL-RD----TPIFTFINKLDRDG 145 (526)
T ss_pred CCchhhH-----------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh-cC----CCEEEEEECCcccc
Confidence 9986543 222233456799999999987777766666655443 22 47999999999875
No 238
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.32 E-value=2.3e-11 Score=107.81 Aligned_cols=119 Identities=15% Similarity=0.217 Sum_probs=74.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccc-cCCCCccceeeeeeeeE--------------e-----------eCCeEE
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTV--------------L-----------KDGQVV 71 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~-~~~~~~~t~~~~~~~~~--------------~-----------~~~~~~ 71 (253)
+..+|+++|..++|||||++.|++...... .....+.|....+.... . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 458999999999999999999987532110 01112233332211110 0 014679
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
++|||||+. .+...+......+|++++|+|++... .......+..+ ..++. +++++++||+|..
T Consensus 83 ~liDtPGh~-----------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHH-----------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCC---CeEEEEEEccccC
Confidence 999999973 23233333345679999999998665 55555555544 33342 3689999999997
Q ss_pred C
Q 025391 151 E 151 (253)
Q Consensus 151 ~ 151 (253)
.
T Consensus 148 ~ 148 (406)
T TIGR03680 148 S 148 (406)
T ss_pred C
Confidence 5
No 239
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.2e-11 Score=106.16 Aligned_cols=128 Identities=20% Similarity=0.226 Sum_probs=85.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCC-CCCCcHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD-FSAGSEFVGKEIVKC 96 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~-~~~~~~~~~~~~~~~ 96 (253)
.++.|+|+|++++|||||+|+|+..+....++. .|.|.+.--..+. .+|..+.++||+|+-. +....+. .-+.++
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv-~GTTRDaiea~v~-~~G~~v~L~DTAGiRe~~~~~iE~--~gI~rA 342 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPV-PGTTRDAIEAQVT-VNGVPVRLSDTAGIREESNDGIEA--LGIERA 342 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCC-CCcchhhheeEee-cCCeEEEEEeccccccccCChhHH--HhHHHH
Confidence 448999999999999999999999987544433 3445544444444 6999999999999987 2222232 222233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--cc------CeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IF------DYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~------~~~ivv~~k~D~~~ 151 (253)
... ...+|++++|+|+....+..+....+.+... +.. +. .+.+++.||.|...
T Consensus 343 ~k~-~~~advi~~vvda~~~~t~sd~~i~~~l~~~-~~g~~~~~~~~~~~~~i~~~nk~D~~s 403 (531)
T KOG1191|consen 343 RKR-IERADVILLVVDAEESDTESDLKIARILETE-GVGLVVIVNKMEKQRIILVANKSDLVS 403 (531)
T ss_pred HHH-HhhcCEEEEEecccccccccchHHHHHHHHh-ccceEEEeccccccceEEEechhhccC
Confidence 222 3567999999999544554454444444332 221 22 68999999999986
No 240
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.31 E-value=8e-12 Score=95.52 Aligned_cols=154 Identities=12% Similarity=0.069 Sum_probs=94.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.++|+++|.+|+|||||+|.+...+.......+.+......-..+. ..-..+.+|||+|.. ++.+.-.
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd-~~~vtlQiWDTAGQE-----------RFqsLg~ 76 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD-DRSVTLQIWDTAGQE-----------RFQSLGV 76 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc-CeEEEEEEEecccHH-----------Hhhhccc
Confidence 3899999999999999999998876543333344433333333332 233467899999984 3334445
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhccc-ccCeEEEEEeCCCCCCCC-----hhhHHHHHcc-cCCchh
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKK-IFDYMIVVFTGGDELEDN-----DETLEDYLGR-ECPKPL 169 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~-~~~~~ivv~~k~D~~~~~-----~~~~~~~~~~-~~~~~l 169 (253)
.+++++|++++|.|++.+-+.+. ...-+.+...-... -.-|++|+.||.|.-... ......++.. .+..|+
T Consensus 77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyf 156 (210)
T KOG0394|consen 77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYF 156 (210)
T ss_pred ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeE
Confidence 67899999999999875444333 33333343332222 235899999999996421 2244555543 223355
Q ss_pred hhhHHHhhhHHHHHH
Q 025391 170 KKGATKLRDQQFEVD 184 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~ 184 (253)
+.+.+..-+....++
T Consensus 157 EtSAK~~~NV~~AFe 171 (210)
T KOG0394|consen 157 ETSAKEATNVDEAFE 171 (210)
T ss_pred EecccccccHHHHHH
Confidence 555555555554444
No 241
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.31 E-value=3.8e-11 Score=107.32 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=78.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccc-----------------------------cCCCCccceeeeeeeeEeeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKDG 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~ 68 (253)
+.++|+++|+.++|||||+..|+....... .....+.|......... +++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~-~~~ 84 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK 84 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc-cCC
Confidence 448999999999999999998875221000 01123566666555554 467
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhcccccCeEE
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYMI 141 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~l~~l~~~~g~~~~~~~i 141 (253)
..++++||||+.+ +..........+|++++|+|++... ....+..+..+.. +|- ++++
T Consensus 85 ~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi---~~ii 149 (446)
T PTZ00141 85 YYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGV---KQMI 149 (446)
T ss_pred eEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCC---CeEE
Confidence 8999999999743 3333444456789999999997654 3455666655444 343 2578
Q ss_pred EEEeCCCCC
Q 025391 142 VVFTGGDEL 150 (253)
Q Consensus 142 vv~~k~D~~ 150 (253)
|++||+|..
T Consensus 150 v~vNKmD~~ 158 (446)
T PTZ00141 150 VCINKMDDK 158 (446)
T ss_pred EEEEccccc
Confidence 999999953
No 242
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=3.1e-11 Score=89.51 Aligned_cols=118 Identities=18% Similarity=0.164 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
++++++|+.|+|||.|+..+.....-.....+.++.....+..+. .+..++.+|||+|. ++++.....
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVG-gK~vKLQIWDTAGQ-----------ErFRSVtRs 77 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVG-GKTVKLQIWDTAGQ-----------ERFRSVTRS 77 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeec-CcEEEEEEeecccH-----------HHHHHHHHH
Confidence 699999999999999999987654422222222333333333322 23458899999997 677788889
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+++++.+.++|.|++++-+... ..|+.-.+.+.+. ...++++.||.|+-.
T Consensus 78 YYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~--nIvviL~GnKkDL~~ 128 (214)
T KOG0086|consen 78 YYRGAAGALLVYDITSRDSFNALTNWLTDARTLASP--NIVVILCGNKKDLDP 128 (214)
T ss_pred HhccccceEEEEeccchhhHHHHHHHHHHHHhhCCC--cEEEEEeCChhhcCh
Confidence 9999999999999997666554 2333333333222 234566789988864
No 243
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.31 E-value=4.3e-11 Score=89.76 Aligned_cols=122 Identities=15% Similarity=0.069 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..|+.+||.+-+|||+|++..+....+....++.++...............++.+|||+|. ++++....
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq-----------erfrsitk 76 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-----------ERFRSITK 76 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch-----------HHHHHHHH
Confidence 4799999999999999999998776644443333333322222222223457899999998 56677777
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++++.-++++|.|++++-+.+. ..+++......+.+...-+.+|.+|+|+..
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 88888889999999998877766 455555555455444445667789999874
No 244
>PRK13351 elongation factor G; Reviewed
Probab=99.30 E-value=3e-11 Score=113.88 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=81.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccc--c-C-------------CCCccceeeeeeeeEeeCCeEEEEEeCCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--R-A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~--~-~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (253)
..++|+|+|+.|+|||||+++|+....... + . ...+.|......... +.+..+.+|||||..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD-WDNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE-ECCEEEEEEECCCcHH
Confidence 458999999999999999999985421100 0 0 013445555445454 4788999999999864
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+. .....++..+|++++|+|++..........+..+... + .|+++++||+|...
T Consensus 86 f~-----------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FT-----------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-G----IPRLIFINKMDRVG 139 (687)
T ss_pred HH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-C----CCEEEEEECCCCCC
Confidence 32 2334445667999999999878777776666655442 2 47899999999875
No 245
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.30 E-value=6.9e-12 Score=97.92 Aligned_cols=119 Identities=15% Similarity=0.238 Sum_probs=67.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeee-eEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR-TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
...|+|+|++|+|||+|+..|.......+-. ........ .....+..+.+||+||+..-. ..+...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~t-----S~e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~ 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVT-----SMENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B--------SSEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeec-----cccCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence 3689999999999999999998764322211 11111111 111245689999999986533 2222221
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK----KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~----~~~~~~ivv~~k~D~~~ 151 (253)
. +.+.+.++|||+|.+ .+...-+...+.|...+-. ....|++|+.||.|.+.
T Consensus 71 ~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 71 K-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp H-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred h-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 1 235678999999986 3333334555555444321 23479999999999986
No 246
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.30 E-value=3.8e-11 Score=108.87 Aligned_cols=119 Identities=23% Similarity=0.297 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+|+++|.+++|||||+|.|+|....-+. -.|+|.......... .+..+.++|.||..+......+ +.+++-+-.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgN--wpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~D--E~Var~~ll 78 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGN--WPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSED--EKVARDFLL 78 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecC--CCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCch--HHHHHHHHh
Confidence 57999999999999999999998763332 346777777666664 7788999999999876543221 333332222
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...||+++-|+|++ .+...-.-+++.+. +| .|+++++|..|...
T Consensus 79 -~~~~D~ivnVvDAt-nLeRnLyltlQLlE--~g----~p~ilaLNm~D~A~ 122 (653)
T COG0370 79 -EGKPDLIVNVVDAT-NLERNLYLTLQLLE--LG----IPMILALNMIDEAK 122 (653)
T ss_pred -cCCCCEEEEEcccc-hHHHHHHHHHHHHH--cC----CCeEEEeccHhhHH
Confidence 36789999999998 67666655555443 24 47999999999875
No 247
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.30 E-value=4.8e-11 Score=110.15 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=77.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc-------------CCCCccceeeeeeeeEee----CCeEEEEEeCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPGLF 80 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtpG~~ 80 (253)
..++|+|+|+.++|||||+.+|+........ ....++|.........+. .+..+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 3479999999999999999999764321100 012345544433333321 24679999999996
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++. ..+..++..+|++|+|+|+++.....+...+..+.. . ..|+++|+||+|...
T Consensus 86 dF~-----------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-~----~lpiIvViNKiDl~~ 140 (600)
T PRK05433 86 DFS-----------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-N----DLEIIPVLNKIDLPA 140 (600)
T ss_pred HHH-----------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C----CCCEEEEEECCCCCc
Confidence 542 223344556799999999987777666544444332 1 247999999999864
No 248
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.28 E-value=9.5e-11 Score=95.71 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=74.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
..++..|+++|++|+|||||+|.|++...........+. . .+....+.+++++||||.. ..+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i---~i~~~~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP---I---TVVTGKKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc---E---EEEecCCceEEEEeCCchH----------HHHHH
Confidence 455688999999999999999999876321111111111 0 1111367889999999842 12222
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
. ...+|++++|+|++..+...+..++..+... |. +.+++|+||+|.+.
T Consensus 100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~---p~vi~VvnK~D~~~ 147 (225)
T cd01882 100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-GF---PRVMGVLTHLDLFK 147 (225)
T ss_pred H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CC---CeEEEEEeccccCC
Confidence 2 2456999999999878887777777766553 32 13556999999984
No 249
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.28 E-value=3.6e-11 Score=97.86 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=74.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
||+|+|+.|+||||..+.|.+...+.. ...-+.|.......+.......+.+||+||..+..... +.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence 799999999999999999997754322 33345666666555554456799999999998654220 00111234
Q ss_pred cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~-~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+..++++|||+|+. ......-..+...+..+....+...+.|++.|.|.+.
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 57778999999997 3333333333333433332234458999999999986
No 250
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.7e-10 Score=101.77 Aligned_cols=121 Identities=16% Similarity=0.208 Sum_probs=96.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+++.|-|+|+-..|||||+.+|-+..+. ....+|+|.+...+.+....|..++|+||||+. -+..+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VA--A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa-----------AF~aM 217 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVA--AGEAGGITQHIGAFTVTLPSGKSITFLDTPGHA-----------AFSAM 217 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCcee--hhhcCCccceeceEEEecCCCCEEEEecCCcHH-----------HHHHH
Confidence 35689999999999999999999988773 344688999999988888889999999999983 23333
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChh
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE 155 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~ 155 (253)
-.+-....|.+++|+.+++..-++..+.++..+.. ..|++|.+||+|....+++
T Consensus 218 RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A-----~VpiVvAinKiDkp~a~pe 271 (683)
T KOG1145|consen 218 RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA-----NVPIVVAINKIDKPGANPE 271 (683)
T ss_pred HhccCccccEEEEEEEccCCccHhHHHHHHHHHhc-----CCCEEEEEeccCCCCCCHH
Confidence 34444556999999999988888887777665553 3589999999998754444
No 251
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.27 E-value=8.3e-11 Score=104.24 Aligned_cols=120 Identities=16% Similarity=0.238 Sum_probs=75.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcc-ccCCCCccceeeeeeeeEee-------------------------CCeE
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLK-------------------------DGQV 70 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~-------------------------~~~~ 70 (253)
.+..+|+++|+.|+|||||+..|++..... ......+.|....+...... ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 344899999999999999999997742110 11112344444332111100 0257
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 025391 71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 71 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
+++|||||.. .+...+......+|++++|+|++... .......+..+.. .+. +++++|+||+|.
T Consensus 87 i~liDtPG~~-----------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~Dl 151 (411)
T PRK04000 87 VSFVDAPGHE-----------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKIDL 151 (411)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeecc
Confidence 8999999963 22233333335679999999998665 5555555555433 332 368999999999
Q ss_pred CC
Q 025391 150 LE 151 (253)
Q Consensus 150 ~~ 151 (253)
..
T Consensus 152 ~~ 153 (411)
T PRK04000 152 VS 153 (411)
T ss_pred cc
Confidence 75
No 252
>PTZ00416 elongation factor 2; Provisional
Probab=99.24 E-value=9e-11 Score=112.31 Aligned_cols=119 Identities=19% Similarity=0.241 Sum_probs=82.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCC--------------CCccceeeeeeeeEee---------CCeEEE
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMQRTVLK---------DGQVVN 72 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~---------~~~~~~ 72 (253)
....++|+++|+.++|||||+++|++......... ..++|.........+. .+..++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 44567999999999999999999987543211111 1123333222222221 145799
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
++||||+.++. ..+..+...+|++|+|+|+...+...+..+++.+.+. + .|+++++||+|..
T Consensus 96 liDtPG~~~f~-----------~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-~----~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFS-----------SEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-R----IRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHH-----------HHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-C----CCEEEEEEChhhh
Confidence 99999996532 3334455677999999999988988888887776653 2 4799999999997
No 253
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.24 E-value=1.1e-10 Score=107.74 Aligned_cols=113 Identities=20% Similarity=0.208 Sum_probs=71.6
Q ss_pred cCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCcc
Q 025391 26 GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIH 105 (253)
Q Consensus 26 G~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (253)
|.+|+|||||+|+|+|... ..+ ...+.|......... .++..+.+|||||..+....... +.+.+... ....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~-n~pG~Tv~~~~~~i~-~~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~l-~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVG-NWPGVTVEKKEGKLG-FQGEDIEIVDLPGIYSLTTFSLE--EEVARDYL-LNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eec-CCCCeEEEEEEEEEE-ECCeEEEEEECCCccccCccchH--HHHHHHHH-hhcCCC
Confidence 8999999999999999864 222 233455555544444 36778999999999875432211 22222211 125789
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 106 AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 106 ~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++++|+|++ .+... ......+.+ ...|+++|+||+|...
T Consensus 75 vvI~VvDat-~ler~-l~l~~ql~~-----~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 75 LVVNVVDAS-NLERN-LYLTLQLLE-----LGIPMILALNLVDEAE 113 (591)
T ss_pred EEEEEecCC-cchhh-HHHHHHHHh-----cCCCEEEEEehhHHHH
Confidence 999999998 34322 222222222 1258999999999864
No 254
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.23 E-value=1.3e-10 Score=111.33 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=81.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCC--------------CCccceeeeeeeeEee---------------
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMQRTVLK--------------- 66 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~--------------- 66 (253)
....++|+|+|+.++|||||+++|+.......... ..+.|.........+.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 44568999999999999999999986543211111 1233333333223221
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeC
Q 025391 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (253)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k 146 (253)
.+..++++||||+.++. ..+..+...+|++|+|+|+...+......+++.+... + .|+++++||
T Consensus 96 ~~~~inliDtPGh~dF~-----------~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-~----~p~i~~iNK 159 (843)
T PLN00116 96 NEYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-R----IRPVLTVNK 159 (843)
T ss_pred CceEEEEECCCCHHHHH-----------HHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-C----CCEEEEEEC
Confidence 25678999999996543 2233344566999999999988888888777766553 2 478999999
Q ss_pred CCCC
Q 025391 147 GDEL 150 (253)
Q Consensus 147 ~D~~ 150 (253)
+|..
T Consensus 160 ~D~~ 163 (843)
T PLN00116 160 MDRC 163 (843)
T ss_pred Cccc
Confidence 9998
No 255
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.23 E-value=5.5e-11 Score=98.92 Aligned_cols=89 Identities=19% Similarity=0.319 Sum_probs=61.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.-+|+|||.+++|||||+|.|++... .......|+......+..+++..+.++|+||+....+.+....+++.
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vl---- 135 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVL---- 135 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceee----
Confidence 37999999999999999999999863 33344445444445555568999999999999765543332222222
Q ss_pred hhcCCccEEEEEEeCC
Q 025391 99 MAKDGIHAVLVVFSVR 114 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~ 114 (253)
...+.+|++++|+|+.
T Consensus 136 sv~R~ADlIiiVld~~ 151 (365)
T COG1163 136 SVARNADLIIIVLDVF 151 (365)
T ss_pred eeeccCCEEEEEEecC
Confidence 2335668888888843
No 256
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.23 E-value=3.4e-11 Score=89.83 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=100.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.++|+|+|..-+|||||+=......+.....++...........+. .....+.+|||+|.. ++-..=+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-d~ra~L~IWDTAGQE-----------rfHALGP 80 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-DCRADLHIWDTAGQE-----------RFHALGP 80 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-cceeeeeeeeccchH-----------hhhccCc
Confidence 4899999999999999987766443311111111111111111222 134578999999974 3333335
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC---hhhHHHHHcccCCchhhhhHH
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT 174 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~---~~~~~~~~~~~~~~~l~~~~~ 174 (253)
-++++.+++|+|+|++++-+... +.|+..++.++|..+ -.+||.||.|+-... -+..+.|-+.-...+..++.+
T Consensus 81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk 158 (218)
T KOG0088|consen 81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAK 158 (218)
T ss_pred eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccc
Confidence 67889999999999997777665 777888888888774 688999999986421 234556666545556666666
Q ss_pred HhhhHHHHHH
Q 025391 175 KLRDQQFEVD 184 (253)
Q Consensus 175 ~~~~~~~~~~ 184 (253)
....+.++|+
T Consensus 159 ~N~Gi~elFe 168 (218)
T KOG0088|consen 159 DNVGISELFE 168 (218)
T ss_pred cccCHHHHHH
Confidence 6666666665
No 257
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.9e-10 Score=100.49 Aligned_cols=120 Identities=17% Similarity=0.213 Sum_probs=94.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
+++.|.++|+-..|||||+..|-+..+ .....+++|.+...+.++.. ....++|+||||+.. +..
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeA-----------Ft~ 70 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEA-----------FTA 70 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHH-----------HHH
Confidence 457999999999999999999998887 44456889999999888865 347999999999842 222
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChh
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE 155 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~ 155 (253)
+-..-..-.|.++||+++++.+-++..+.++.++.. + .|++|.+||+|....++.
T Consensus 71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-~----vP~iVAiNKiDk~~~np~ 125 (509)
T COG0532 71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-G----VPIVVAINKIDKPEANPD 125 (509)
T ss_pred HHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-C----CCEEEEEecccCCCCCHH
Confidence 222222344899999999999999998888777664 3 489999999999965443
No 258
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.22 E-value=5.5e-11 Score=112.30 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcc----------ccC----CCCccceeeeeee---eEeeCCeEEEEEeCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK----------SRA----SSSGVTSTCEMQR---TVLKDGQVVNVIDTPGL 79 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~----------~~~----~~~~~t~~~~~~~---~~~~~~~~~~liDtpG~ 79 (253)
...++|+++|+.|+|||||++.|+...... ... ...+.|....... ...+.+..+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 345899999999999999999987431100 000 0123333332211 11245678999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++. ..+..++..+|++|+|+|+.......+...++.+.+. + .|.++++||+|...
T Consensus 97 ~~f~-----------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFG-----------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-N----VKPVLFINKVDRLI 152 (720)
T ss_pred cccH-----------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-C----CCEEEEEEChhccc
Confidence 7743 1223344566999999999877777766666554332 2 36789999999973
No 259
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=8e-10 Score=90.09 Aligned_cols=128 Identities=18% Similarity=0.210 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC---ccceeeeeeeeEeeC-CeEEEEEeCCCCCCCCCCcHH---H
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS---GVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEF---V 89 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~---~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~---~ 89 (253)
+-.++|+-||.+|.|||||+++|++...- ..+.+. ++......+.....+ ...++++||.|+.|.-.-.+. +
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~-~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFE-SEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccC-CCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence 34589999999999999999999987642 222211 112222222111111 247899999999864322211 1
Q ss_pred HH--------------HHHHHH-HhhcCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 90 GK--------------EIVKCI-GMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 90 ~~--------------~~~~~~-~~~~~~~~~~l~v~d~~-~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.. .+.+++ ..-..++|++||.+.++ +.+-..+..+++.+... .++|.|+.|+|...
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtis 190 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhh
Confidence 11 112222 12236789999999886 34555566566555443 37899999999876
No 260
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.17 E-value=2e-10 Score=84.18 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=88.3
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 025391 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE 92 (253)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 92 (253)
-+++.+..||+++|--++|||||++.|.+.++.+..+..+.. ...+.+.....+++||..|. +.
T Consensus 11 ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn-----~k~v~~~g~f~LnvwDiGGq-----------r~ 74 (185)
T KOG0074|consen 11 KSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFN-----TKKVEYDGTFHLNVWDIGGQ-----------RG 74 (185)
T ss_pred cCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcc-----eEEEeecCcEEEEEEecCCc-----------cc
Confidence 466778899999999999999999999998764443322222 23344445578999999987 45
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHH
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDY 160 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~ 160 (253)
++-.++.++...|.+|||+|.++.-..+ ...+.+.+... .-...|++|..||-|.+. ....++.
T Consensus 75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleee--Kl~~vpvlIfankQdllt--aa~~eei 140 (185)
T KOG0074|consen 75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEE--KLAEVPVLIFANKQDLLT--AAKVEEI 140 (185)
T ss_pred cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhh--hhhccceeehhhhhHHHh--hcchHHH
Confidence 6678889999999999999976432222 24444443332 113458888899999886 4444443
No 261
>PTZ00258 GTP-binding protein; Provisional
Probab=99.16 E-value=3.5e-10 Score=98.58 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=60.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC----------------CeEEEEEeCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLF 80 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~ 80 (253)
....+|+|||.+++|||||+|+|++...... ...++|.......+...+ +..+.++||||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~--n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAE--NFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCccccc--CCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 4457999999999999999999998764221 123344444444443221 2248999999998
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 025391 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (253)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (253)
...+..+.+...+...+ ..+|++++|++..
T Consensus 97 ~ga~~g~gLg~~fL~~I----r~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHI----RAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHH----HHCCEEEEEEeCC
Confidence 65443444444444433 4569999999973
No 262
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=1e-10 Score=89.04 Aligned_cols=120 Identities=21% Similarity=0.121 Sum_probs=79.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
....+++|+|..++||||++.+.+............++.....-..+. ....++.+|||.|. +++...
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~-~Edvr~mlWdtagq-----------eEfDaI 85 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVL-IEDVRSMLWDTAGQ-----------EEFDAI 85 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhh-HHHHHHHHHHhccc-----------hhHHHH
Confidence 455899999999999999999998543311111122222111111111 13446778999997 445566
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+++|+.+.++|++.+++.+.+. ..+-+.+.+..+ ..|+++|-||+|+++
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~---~IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE---RIPTVFVQNKIDLVE 138 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc---cCCeEEeeccchhhH
Confidence 6788899999999999988877665 333333443333 469999999999997
No 263
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.16 E-value=2.5e-10 Score=95.31 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=56.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC----------------eEEEEEeCCCCCCCCCC
Q 025391 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFSAG 85 (253)
Q Consensus 22 i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtpG~~~~~~~ 85 (253)
|+|||.+++|||||+|+|++..... + ...++|.......+...+. ..+.++|+||+....+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~-~-n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA-A-NYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc-c-cccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 6899999999999999999987622 1 1233443444433332221 14899999999865544
Q ss_pred cHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 025391 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (253)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (253)
++.+...+...+ ..+|++++|++..
T Consensus 79 ~~glg~~fL~~i----~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHI----REVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHH----HhCCEEEEEEeCc
Confidence 444444444333 4569999999863
No 264
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.16 E-value=6.2e-10 Score=99.47 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=75.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc-CCCCccceeeeeeee---------------Ee---------------
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRT---------------VL--------------- 65 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-~~~~~~t~~~~~~~~---------------~~--------------- 65 (253)
.+..+|+++|+-.+|||||+.+|+|....... ....+.|....+... .+
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 45689999999999999999999986542111 111233322211110 00
Q ss_pred --eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccCeEEE
Q 025391 66 --KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIV 142 (253)
Q Consensus 66 --~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~~l~~l~~~~g~~~~~~~iv 142 (253)
.-...+.++||||+. .+.+.+......+|++++|++++.. ..+..+..+..+ ..+|- ++++|
T Consensus 112 ~~~~~~~i~~IDtPGH~-----------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi---~~iIV 176 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKL---KHIII 176 (460)
T ss_pred cccccceEeeeeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCC---CcEEE
Confidence 002478999999963 3333333344677999999999864 455555555433 34453 37899
Q ss_pred EEeCCCCCC
Q 025391 143 VFTGGDELE 151 (253)
Q Consensus 143 v~~k~D~~~ 151 (253)
++||+|...
T Consensus 177 vlNKiDlv~ 185 (460)
T PTZ00327 177 LQNKIDLVK 185 (460)
T ss_pred EEecccccC
Confidence 999999975
No 265
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=4.8e-10 Score=104.18 Aligned_cols=120 Identities=23% Similarity=0.302 Sum_probs=90.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc---CC-------------CCccceeeeeeeeEeeCC-eEEEEEeCCC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR---AS-------------SSGVTSTCEMQRTVLKDG-QVVNVIDTPG 78 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~---~~-------------~~~~t~~~~~~~~~~~~~-~~~~liDtpG 78 (253)
....++|+|+|+.++|||||..+|+-....... .. ..++|......+.. +.+ ..+++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~-~~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLF-WKGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEE-EcCceEEEEeCCCC
Confidence 345589999999999999999998755432221 11 13566666666665 475 9999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
+.|+. .+..+.+..+ |++++|+|+.....+....+++...+. + .|.++++||.|.+..
T Consensus 86 HVDFt-------~EV~rslrvl----DgavvVvdaveGV~~QTEtv~rqa~~~-~----vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDFT-------IEVERSLRVL----DGAVVVVDAVEGVEPQTETVWRQADKY-G----VPRILFVNKMDRLGA 143 (697)
T ss_pred ccccH-------HHHHHHHHhh----cceEEEEECCCCeeecHHHHHHHHhhc-C----CCeEEEEECcccccc
Confidence 99987 3444555444 899999999989999988888877764 2 489999999999853
No 266
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.15 E-value=3.6e-10 Score=90.10 Aligned_cols=119 Identities=23% Similarity=0.195 Sum_probs=79.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+++|.+|+|||+|...+++......- .+...........+. .....+.++||+|..++ ..+..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y-~ptied~y~k~~~v~-~~~~~l~ilDt~g~~~~-----------~~~~~ 69 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDY-DPTIEDSYRKELTVD-GEVCMLEILDTAGQEEF-----------SAMRD 69 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccccccc-CCCccccceEEEEEC-CEEEEEEEEcCCCcccC-----------hHHHH
Confidence 479999999999999999888876653322 221112222222222 23346779999995433 34445
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+....|++++|++++++.+... ..+.+.+.+..+.. ..|+++|.||+|+..
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLER 122 (196)
T ss_pred HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchh
Confidence 66677799999999998888777 44445554443322 369999999999975
No 267
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.14 E-value=4.4e-10 Score=96.92 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC----------------eEEEEEeCCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS 83 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtpG~~~~~ 83 (253)
.+|+|||.+++|||||+|+|++.... .. ...++|.......+...+. ..+.++|+||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~-v~-nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAE-AA-NYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCe-ec-ccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 68999999999999999999998732 11 1223444444333332221 258999999998644
Q ss_pred CCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 025391 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (253)
+..+.+...+...+ ..+|++++|+++.
T Consensus 81 ~~g~glg~~fL~~i----~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANI----REVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHH----HhCCEEEEEEeCC
Confidence 43333334443333 4669999999974
No 268
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.12 E-value=2.9e-09 Score=86.82 Aligned_cols=109 Identities=19% Similarity=0.117 Sum_probs=67.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC-CCccccCCCCccceeeeeeeeEee--CCeEEEEEeCCCCCCCCCCcHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGR-RAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKE 92 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~ 92 (253)
..+...|+++|+.++|||||+|.|+|. ..|..+......|.....+..+.. .+..+.++||||+.+...+.......
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 345578999999999999999999998 355555544555665555544432 35789999999999876544111122
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHH
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQ 129 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~ 129 (253)
+...... -.+++||..+.. ....+...+..+.
T Consensus 84 ~~~l~~l---lss~~i~n~~~~--~~~~~~~~l~~~~ 115 (224)
T cd01851 84 LFALATL---LSSVLIYNSWET--ILGDDLAALMGLL 115 (224)
T ss_pred HHHHHHH---HhCEEEEeccCc--ccHHHHHHHHHHH
Confidence 2222111 126788777653 4444444444443
No 269
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.12 E-value=7.9e-10 Score=98.86 Aligned_cols=117 Identities=17% Similarity=0.221 Sum_probs=77.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcc-----------------------------ccCCCCccceeeeeeeeEeeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLKDG 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~ 68 (253)
+.++|+++|+.++|||||+-.|+...... ......+.|.......+. ..+
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~-~~~ 84 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE-TTK 84 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec-CCC
Confidence 44899999999999999998876322100 001123566666655554 367
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-CC------HHHHHHHHHHHHHhcccccCeEE
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FS------QEEEAALHSLQTLFGKKIFDYMI 141 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~------~~~~~~l~~l~~~~g~~~~~~~i 141 (253)
..++++||||+. .+.......+..+|++|+|+|++.. +. ...+..+..+.. +|- ++++
T Consensus 85 ~~i~liDtPGh~-----------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi---~~iI 149 (447)
T PLN00043 85 YYCTVIDAPGHR-----------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGV---KQMI 149 (447)
T ss_pred EEEEEEECCCHH-----------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCC---CcEE
Confidence 899999999984 3444444555788999999999753 21 233444433322 343 3688
Q ss_pred EEEeCCCCC
Q 025391 142 VVFTGGDEL 150 (253)
Q Consensus 142 vv~~k~D~~ 150 (253)
|++||+|..
T Consensus 150 V~vNKmD~~ 158 (447)
T PLN00043 150 CCCNKMDAT 158 (447)
T ss_pred EEEEcccCC
Confidence 899999975
No 270
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.11 E-value=1.1e-09 Score=94.83 Aligned_cols=128 Identities=17% Similarity=0.207 Sum_probs=80.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccC--------------CCCc---cceeeee---eeeEeeCC----eEE
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSG---VTSTCEM---QRTVLKDG----QVV 71 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~--------------~~~~---~t~~~~~---~~~~~~~~----~~~ 71 (253)
++....|+++|+.++|||||+|++++..+.+.-. +..| .|+...+ ..+...-. ..+
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 3455899999999999999999999993221111 1223 4444444 22222222 578
Q ss_pred EEEeCCCCCCCCCCcHHHHHH----------------------HHHHHHhhcCCccEEEEEE-eCC------CCCCHHHH
Q 025391 72 NVIDTPGLFDFSAGSEFVGKE----------------------IVKCIGMAKDGIHAVLVVF-SVR------SRFSQEEE 122 (253)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~v~-d~~------~~~~~~~~ 122 (253)
.++||+|+.+.+.-+..-... .++.+. .+.+..|+|. |.+ ......+.
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~---dhstIgivVtTDgsi~dI~Re~y~~aEe 170 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ---EHSTIGVVVTTDGTITDIPREDYVEAEE 170 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH---hcCcEEEEEEcCCCccccccccchHHHH
Confidence 999999998765333211111 122222 3557888887 653 35666677
Q ss_pred HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 123 AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 123 ~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+++.+++. + +|+++|+|+.|-..
T Consensus 171 ~~i~eLk~~-~----kPfiivlN~~dp~~ 194 (492)
T TIGR02836 171 RVIEELKEL-N----KPFIILLNSTHPYH 194 (492)
T ss_pred HHHHHHHhc-C----CCEEEEEECcCCCC
Confidence 788887775 3 58999999999553
No 271
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.10 E-value=9.4e-10 Score=89.62 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=23.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
...++..|+++|..|+|||||+..|...
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHH
Confidence 3455678999999999999999988654
No 272
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.10 E-value=1.7e-10 Score=109.17 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=78.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCC--------------CCccceeeeeeeeEe---eCCeEEEEEeCCC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMQRTVL---KDGQVVNVIDTPG 78 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~---~~~~~~~liDtpG 78 (253)
....++|+++|+.++|||||+.+|+.......... ..+.|.........+ ..+..++++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 34557899999999999999999975432111100 112333333222221 1356789999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
+.++. ..+..+...+|++|+|+|+...........++...+. + .|.++++||+|..
T Consensus 97 ~~df~-----------~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFG-----------GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-R----VKPVLFINKVDRL 152 (731)
T ss_pred ccChH-----------HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence 98742 2333344566999999999878887777777765443 3 2578999999987
No 273
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.4e-09 Score=77.14 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=87.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
....+|+.+|-.++||||++-.|.-... ...-.|+-.....+.+ ++..+++||..|. ..++..
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGGq-----------d~iRpl 77 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGGQ-----------DKIRPL 77 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccCc-----------hhhhHH
Confidence 3468999999999999999977753321 1222233334444553 7889999999987 457788
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCC-ChhhHHHHHcc
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED-NDETLEDYLGR 163 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~~-~~~~~~~~~~~ 163 (253)
++.++++..++|||+|..++ +..+.+. +.+....+.+ ...+++|+.||-|.... .++.+.+|++.
T Consensus 78 WrhYy~gtqglIFV~Dsa~~-dr~eeAr-~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leL 145 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADR-DRIEEAR-NELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLEL 145 (180)
T ss_pred HHhhccCCceEEEEEeccch-hhHHHHH-HHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcc
Confidence 88999999999999998655 3333222 2333444433 22477888999998642 26778888874
No 274
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.5e-09 Score=95.88 Aligned_cols=126 Identities=22% Similarity=0.315 Sum_probs=89.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccC-------------CCCccceeeeeeeeEeeC--CeEEEEEeCCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA-------------SSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFD 81 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~ 81 (253)
++.+++.||.+-..|||||..+|+....+.... ...|+|......++.+.+ ...+++|||||+.|
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 556889999999999999999987665421110 134788877777766533 26899999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHH
Q 025391 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE 158 (253)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~ 158 (253)
++ .+..+.+..| +++|+|+|+....-.+....+-...+ +| -.+|+|+||+|.-..+...++
T Consensus 138 Fs-------~EVsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe-~~----L~iIpVlNKIDlp~adpe~V~ 198 (650)
T KOG0462|consen 138 FS-------GEVSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFE-AG----LAIIPVLNKIDLPSADPERVE 198 (650)
T ss_pred cc-------ceehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHH-cC----CeEEEeeeccCCCCCCHHHHH
Confidence 88 3444666666 79999999987877776544432222 12 258999999999876554443
No 275
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.3e-09 Score=78.61 Aligned_cols=120 Identities=14% Similarity=0.167 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.++..|+|.-|+|||.|+..++.......-+...++..-..+..+. ....++.+|||+|. ++++....
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievs-gqkiklqiwdtagq-----------erfravtr 78 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQKIKLQIWDTAGQ-----------ERFRAVTR 78 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEec-CcEEEEEEeecccH-----------HHHHHHHH
Confidence 4789999999999999999988766533333333333333332222 12457889999997 67778888
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
.+++++.+.|+|.|++.+.+... ..|+.-.+.+- .+...++++.||.|+-..
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~lt--npnt~i~lignkadle~q 131 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLESQ 131 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccC--CCceEEEEecchhhhhhc
Confidence 89999999999999985554433 22332222221 122356778999998653
No 276
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.05 E-value=4.8e-10 Score=88.15 Aligned_cols=115 Identities=21% Similarity=0.130 Sum_probs=80.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
..+++|||..++|||+|+-+.+... |+....+ |..-++...... ....+.+|||.|..+.. +
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~-fp~~yvP---TVFdnys~~v~V~dg~~v~L~LwDTAGqedYD-----------r 68 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNA-FPEEYVP---TVFDNYSANVTVDDGKPVELGLWDTAGQEDYD-----------R 68 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCc-CcccccC---eEEccceEEEEecCCCEEEEeeeecCCCcccc-----------c
Confidence 3799999999999999998876553 3333222 333233222222 23467899999998753 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.-..+++..|+||+++++.++.+.++ ..++-.+.... ...|+|+|.+|.|+..
T Consensus 69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLRD 123 (198)
T ss_pred ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhhh
Confidence 22458899999999999987777665 55566666654 3469999999999985
No 277
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=5.1e-09 Score=90.05 Aligned_cols=129 Identities=20% Similarity=0.243 Sum_probs=84.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccc-----------------------------cCCCCccceeeeeeeeEeeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKDG 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~ 68 (253)
+-.+++++|+..+|||||+-.|+-...... .....+.|.......++. +.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k 84 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DK 84 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CC
Confidence 448999999999999999987764432000 011236677766666664 55
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccCeEE
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI 141 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~l~~l~~~~g~~~~~~~i 141 (253)
..++++|+||.-| +..-...-+..+|+.+||+++... .....+..+ .|...+|- ...|
T Consensus 85 ~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi---~~lI 149 (428)
T COG5256 85 YNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGI---KQLI 149 (428)
T ss_pred ceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCC---ceEE
Confidence 6899999999633 222222233677999999999755 444555554 34455664 4799
Q ss_pred EEEeCCCCCCCChhhHHHHHc
Q 025391 142 VVFTGGDELEDNDETLEDYLG 162 (253)
Q Consensus 142 vv~~k~D~~~~~~~~~~~~~~ 162 (253)
|++||+|...-+...+++..+
T Consensus 150 VavNKMD~v~wde~rf~ei~~ 170 (428)
T COG5256 150 VAVNKMDLVSWDEERFEEIVS 170 (428)
T ss_pred EEEEcccccccCHHHHHHHHH
Confidence 999999998633444444443
No 278
>PRK12740 elongation factor G; Reviewed
Probab=99.03 E-value=3.9e-09 Score=99.40 Aligned_cols=110 Identities=24% Similarity=0.316 Sum_probs=74.2
Q ss_pred EcCCCCCHHHHHHHHhCCCCcccc---C-------------CCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHH
Q 025391 25 VGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (253)
Q Consensus 25 vG~~g~GKSTl~n~l~g~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 88 (253)
+|+.|+|||||++.|+........ . ...++|......... +.+..+++|||||..++.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~-~~~~~i~liDtPG~~~~~----- 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE-WKGHKINLIDTPGHVDFT----- 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE-ECCEEEEEEECCCcHHHH-----
Confidence 699999999999999654321111 0 013445555445454 478899999999985421
Q ss_pred HHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++++|+|++..........+..+... + .|+++|+||+|...
T Consensus 75 ------~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-~----~p~iiv~NK~D~~~ 126 (668)
T PRK12740 75 ------GEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-G----VPRIIFVNKMDRAG 126 (668)
T ss_pred ------HHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEECCCCCC
Confidence 2222334567999999999877777766666655442 2 47899999999875
No 279
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=4.3e-10 Score=84.05 Aligned_cols=119 Identities=15% Similarity=0.080 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe----eC----CeEEEEEeCCCCCCCCCCcHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL----KD----GQVVNVIDTPGLFDFSAGSEFVGK 91 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~----~~----~~~~~liDtpG~~~~~~~~~~~~~ 91 (253)
.+.+.+|.+|+||||++-..+.......-..+.++........... .. ...+.+|||+|. +
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ-----------E 78 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ-----------E 78 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH-----------H
Confidence 4677889999999999877665433111111112221111111110 01 125779999997 5
Q ss_pred HHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHH-hcccccCeEEEEEeCCCCCC
Q 025391 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTL-FGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~-~g~~~~~~~ivv~~k~D~~~ 151 (253)
+++......++.+-+||+++|+++.-+... +.|+..++.. +-+ .+-++++.||+|+..
T Consensus 79 RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE--~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 79 RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE--NPDIVLCGNKADLED 138 (219)
T ss_pred HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC--CCCEEEEcCccchhh
Confidence 566666666777789999999997666555 5555555432 222 246889999999974
No 280
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.02 E-value=3.2e-09 Score=93.41 Aligned_cols=89 Identities=19% Similarity=0.115 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe--------------------e---CCeEEEEEeC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------K---DGQVVNVIDT 76 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~---~~~~~~liDt 76 (253)
.+|+|||.+++|||||+|+|++...... .....|..+....... . ....+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~--~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIA--NYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccc--CCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 5899999999999999999998764221 1122333333322110 1 1245789999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 025391 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (253)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (253)
||+.........+...+...+ ..+|++++|++..
T Consensus 80 aGl~~ga~~g~glg~~fL~~i----r~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDL----RQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence 999754433333333443333 4559999999985
No 281
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.02 E-value=7.9e-10 Score=85.22 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=41.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (253)
...+|+++|.+|+|||||+|+|+|......+..+ +.|....... .+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~-g~T~~~~~~~----~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP-GETKVWQYIT----LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC-CeeEeEEEEE----cCCCEEEEECcCC
Confidence 3478999999999999999999998765555433 3344333222 2345899999995
No 282
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.01 E-value=4.9e-10 Score=101.51 Aligned_cols=135 Identities=16% Similarity=0.094 Sum_probs=83.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC-CeEEEEEeC-----CCCC----------
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDT-----PGLF---------- 80 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDt-----pG~~---------- 80 (253)
.+.-||+|+|+||+|||||++.|+|...+..+....+.+....++...... ...-+++|. |+..
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~ 425 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR 425 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHH
Confidence 345799999999999999999999987766555455555555554443211 011122222 1110
Q ss_pred -CC-----------CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 81 -DF-----------SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 81 -~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
.+ -+++++. +-.+....-.+.-+|++++||++++......++.....|. .++|++||+.
T Consensus 426 f~F~~~~~~~~v~~LSGGEk~----Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-----Gtvl~VSHDr 496 (530)
T COG0488 426 FGFTGEDQEKPVGVLSGGEKA----RLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-----GTVLLVSHDR 496 (530)
T ss_pred cCCChHHHhCchhhcCHhHHH----HHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-----CeEEEEeCCH
Confidence 00 0122211 1122222233446778899999999999888877766653 6999999999
Q ss_pred CCCCChhhHHHHHc
Q 025391 149 ELEDNDETLEDYLG 162 (253)
Q Consensus 149 ~~~~~~~~~~~~~~ 162 (253)
.+. +.....+|.
T Consensus 497 ~Fl--~~va~~i~~ 508 (530)
T COG0488 497 YFL--DRVATRIWL 508 (530)
T ss_pred HHH--HhhcceEEE
Confidence 886 555555554
No 283
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.00 E-value=5e-09 Score=91.05 Aligned_cols=117 Identities=21% Similarity=0.350 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccC--------------CCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (253)
++|+||.+...|||||+..|+.+...-... ...++|.-..-..+. +++.+++++||||+-|+.+.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~-~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN-YNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceee-cCCeEEEEecCCCcCCccch
Confidence 789999999999999999999875311110 123556555545555 58899999999999998854
Q ss_pred cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 025391 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (253)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~ 153 (253)
-+ +.++. .|++++++|+....-++.+.+++...+. |- +.|||+||.|.....
T Consensus 85 VE-------Rvl~M----VDgvlLlVDA~EGpMPQTrFVlkKAl~~-gL----~PIVVvNKiDrp~Ar 136 (603)
T COG1217 85 VE-------RVLSM----VDGVLLLVDASEGPMPQTRFVLKKALAL-GL----KPIVVINKIDRPDAR 136 (603)
T ss_pred hh-------hhhhh----cceEEEEEEcccCCCCchhhhHHHHHHc-CC----CcEEEEeCCCCCCCC
Confidence 33 33333 4899999999888888888877655543 32 578999999998543
No 284
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.98 E-value=5.1e-09 Score=89.49 Aligned_cols=87 Identities=20% Similarity=0.132 Sum_probs=52.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-----------------------eCCeEEEEEeCCC
Q 025391 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------------KDGQVVNVIDTPG 78 (253)
Q Consensus 22 i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------------~~~~~~~liDtpG 78 (253)
|+|||.+++|||||+|+|++.... .... ...|.......... .....+.+|||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~-~~~~-pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVE-IANY-PFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCc-ccCC-CCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 689999999999999999987642 1111 11222222211110 1234689999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 025391 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (253)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (253)
+.............+.. .+..+|++++|+|++
T Consensus 79 lv~ga~~~~glg~~fL~----~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLD----DLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHH----HHHHCCEEEEEEeCC
Confidence 96433222222233332 345669999999986
No 285
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.96 E-value=7.1e-09 Score=92.29 Aligned_cols=123 Identities=17% Similarity=0.218 Sum_probs=82.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCc-cceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...||+|||..|+|||||+=+|+....++.-+..-. ++.. ..+ ...+....++||+.-.+. ..+
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---adv-tPe~vpt~ivD~ss~~~~-----------~~~ 72 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADV-TPENVPTSIVDTSSDSDD-----------RLC 72 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---Ccc-CcCcCceEEEecccccch-----------hHH
Confidence 348999999999999999999998876443322111 1111 111 124455789999744321 122
Q ss_pred HHhhcCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChh
Q 025391 97 IGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE 155 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~--~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~ 155 (253)
+..-...+|++.+|...++ .++.....|+-.++..+|.....|+|+|.||.|.......
T Consensus 73 l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 73 LRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred HHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 2333345689999987763 2444447788888888888889999999999999864333
No 286
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.6e-09 Score=82.14 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=81.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
......+|+++|--||||||++..|--.....+ .+|.-.+...+.+ ++..+.+||.-|... ++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~R 75 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQEK-----------LR 75 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCcc-----------cc
Confidence 345568999999999999999988755444333 3344444455554 688999999999843 44
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~ 151 (253)
..+..+++..+++|||+|.+++..-.+ .-..+..++..+ ...|+++..||-|...
T Consensus 76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~e--ak~eL~~~l~~~~l~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 76 PLWKHYFQNTQGLIFVVDSSDRERIEE--AKEELHRMLAEPELRNAPLLVFANKQDLPG 132 (181)
T ss_pred cchhhhccCCcEEEEEEeCCcHHHHHH--HHHHHHHHHcCcccCCceEEEEechhhccc
Confidence 667788899999999999885544433 112222232222 3468999999999864
No 287
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.95 E-value=1.5e-08 Score=75.50 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=73.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh-CCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSIL-GRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~-g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~ 93 (253)
+...+|++||.-++|||+++..|+ |...+.... .+...+....+++...+ ..+.+.||.|+.+.. .
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~--~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~-------~-- 75 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL--HPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ-------Q-- 75 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCcc--ccchhhheeEeeecCCChhheEEEeecccccCch-------h--
Confidence 345899999999999999997765 443322211 11111222233333222 368899999997542 1
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHH---hcccccCeEEEEEeCCCCCC
Q 025391 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL---FGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~---~g~~~~~~~ivv~~k~D~~~ 151 (253)
..-..++.-+|+|++|.++.+ ++..+.+..+++. +.+.--.|++|+.|++|...
T Consensus 76 -eLprhy~q~aDafVLVYs~~d---~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~ 132 (198)
T KOG3883|consen 76 -ELPRHYFQFADAFVLVYSPMD---PESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE 132 (198)
T ss_pred -hhhHhHhccCceEEEEecCCC---HHHHHHHHHHHHHHhhccccccccEEEEechhhccc
Confidence 222355566799999998663 3443344433333 23333468999999999964
No 288
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.94 E-value=5.3e-10 Score=85.64 Aligned_cols=62 Identities=31% Similarity=0.360 Sum_probs=36.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCC-----CC-ccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS-----SS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~-----~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (253)
..++|+|++|||||||+|.|++.....++.. .+ ..|+....... .....+|||||+.++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l----~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL----PDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE----TTSEEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec----CCCcEEEECCCCCccccc
Confidence 7899999999999999999999865433311 11 22333333322 234589999999776543
No 289
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.93 E-value=3.6e-09 Score=78.19 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=75.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
...+.++|--.+|||||+|.++..... ..-..|.-.+.+.+. ..+..+.+||.||.. .++.+..
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~----edmiptvGfnmrk~t-kgnvtiklwD~gGq~-----------rfrsmWe 83 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYL----EDMIPTVGFNMRKVT-KGNVTIKLWDLGGQP-----------RFRSMWE 83 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccch----hhhcccccceeEEec-cCceEEEEEecCCCc-----------cHHHHHH
Confidence 368999999999999999998753221 111223333333333 256788999999984 4557778
Q ss_pred hhcCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~--~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~ 151 (253)
.++++.++++||+|+.++ ++.. +.-+. ..+..+ ...|++|+.||.|...
T Consensus 84 rycR~v~aivY~VDaad~~k~~~s-r~EL~---~LL~k~~l~gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEAS-RSELH---DLLDKPSLTGIPLLVLGNKIDLPG 136 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhh-HHHHH---HHhcchhhcCCcEEEecccccCcc
Confidence 888999999999998742 2222 22222 222222 2468999999999975
No 290
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.90 E-value=4e-09 Score=82.43 Aligned_cols=57 Identities=33% Similarity=0.401 Sum_probs=41.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (253)
...+|+++|.+|+|||||+|+|+|......+..+ +.|....... .+..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~p-g~T~~~~~~~----~~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATP-GVTKSMQEVH----LDKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCC-CeEcceEEEE----eCCCEEEEECcCC
Confidence 3479999999999999999999998775555433 4444333222 2346899999995
No 291
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.9e-08 Score=91.07 Aligned_cols=127 Identities=22% Similarity=0.291 Sum_probs=88.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeee---------------------------------------
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--------------------------------------- 60 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~--------------------------------------- 60 (253)
.+|++.|.+.+||||++|+++...+.+.+..+. +.|..
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~---TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHT---TNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCccccccc---ceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 699999999999999999999888766554321 11000
Q ss_pred -----eeeEeeCC------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHH
Q 025391 61 -----QRTVLKDG------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQ 129 (253)
Q Consensus 61 -----~~~~~~~~------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~ 129 (253)
..+-+.++ .++.++|.||+.-. .+....+-.+...+|+++||+.+.+.++..+..++....
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~--------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs 258 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVS 258 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCc--------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhh
Confidence 00111111 26889999999642 333455545556789999999998889988888876665
Q ss_pred HHhcccccCeEEEEEeCCCCCCCChhhHHHHHc
Q 025391 130 TLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (253)
Q Consensus 130 ~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~ 162 (253)
+. .++++|+.||+|...++++-.++...
T Consensus 259 ~~-----KpniFIlnnkwDasase~ec~e~V~~ 286 (749)
T KOG0448|consen 259 EE-----KPNIFILNNKWDASASEPECKEDVLK 286 (749)
T ss_pred cc-----CCcEEEEechhhhhcccHHHHHHHHH
Confidence 53 35899999999998755555555554
No 292
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.88 E-value=5e-09 Score=79.27 Aligned_cols=62 Identities=29% Similarity=0.440 Sum_probs=41.7
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCC
Q 025391 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (253)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (253)
|+.....+++++|.+|+|||||+|+|++........ ..+.|..... +.. +..+.+|||||+.
T Consensus 78 Sa~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~--~~~--~~~~~i~DtpG~~ 139 (141)
T cd01857 78 SALKENATIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQT--IFL--TPTITLCDCPGLV 139 (141)
T ss_pred EecCCCcEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEE--EEe--CCCEEEEECCCcC
Confidence 333333489999999999999999999987653322 2333433322 221 2368999999985
No 293
>PRK13768 GTPase; Provisional
Probab=98.86 E-value=1.4e-08 Score=84.34 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=48.5
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
..+.+|||||..+.... ......+.+.+.... ++++++|+|+....++.+.....++....-.....|+++|+||+|
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D 173 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD 173 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence 36899999998653211 112233333333221 789999999976666666444443321110012358999999999
Q ss_pred CCC
Q 025391 149 ELE 151 (253)
Q Consensus 149 ~~~ 151 (253)
.+.
T Consensus 174 ~~~ 176 (253)
T PRK13768 174 LLS 176 (253)
T ss_pred hcC
Confidence 987
No 294
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.86 E-value=9.1e-10 Score=79.97 Aligned_cols=114 Identities=14% Similarity=0.171 Sum_probs=75.1
Q ss_pred EEEcCCCCCHHHHHHHHhCCCCcccc--CCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 23 VLVGRTGNGKSATGNSILGRRAFKSR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 23 ~lvG~~g~GKSTl~n~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
+++|.+++|||.|+-..-... |..+ .++.++........+. ....++.+|||+|. ++++...-.+
T Consensus 1 mllgds~~gktcllir~kdga-fl~~~fistvgid~rnkli~~~-~~kvklqiwdtagq-----------erfrsvt~ay 67 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGA-FLAGNFISTVGIDFRNKLIDMD-DKKVKLQIWDTAGQ-----------ERFRSVTHAY 67 (192)
T ss_pred CccccCccCceEEEEEeccCc-eecCceeeeeeeccccceeccC-CcEEEEEEeeccch-----------HHHhhhhHhh
Confidence 478999999998764432111 1111 1111222222222221 13457899999998 5666777788
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++.+|+++++.|++++.+... +.|+..+.++-... ...+++.||+|...
T Consensus 68 yrda~allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAH 117 (192)
T ss_pred hcccceeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccch
Confidence 899999999999998888877 67777777753322 36789999999964
No 295
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=2.9e-08 Score=78.15 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
..|.++|++++|||+|+-.|.-.... ..-+....+..... .+...+.+||.||.. +++.-+..
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~-----~TvtSiepn~a~~r-~gs~~~~LVD~PGH~-----------rlR~kl~e 101 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR-----GTVTSIEPNEATYR-LGSENVTLVDLPGHS-----------RLRRKLLE 101 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc-----CeeeeeccceeeEe-ecCcceEEEeCCCcH-----------HHHHHHHH
Confidence 68999999999999998776544221 11111222222222 244558999999984 33333333
Q ss_pred hcC---CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccCeEEEEEeCCCCCCC
Q 025391 100 AKD---GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK----KIFDYMIVVFTGGDELED 152 (253)
Q Consensus 100 ~~~---~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~----~~~~~~ivv~~k~D~~~~ 152 (253)
+++ .+-+++||+|.. -+...-+...+.+...+-. ....|++|+-||-|.+..
T Consensus 102 ~~~~~~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 102 YLKHNYSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred HccccccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 333 578999999876 5555555555555444322 234689999999999964
No 296
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.84 E-value=4.7e-09 Score=83.74 Aligned_cols=120 Identities=23% Similarity=0.211 Sum_probs=69.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccc------------------eeeeeeeeE----------------e
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVT------------------STCEMQRTV----------------L 65 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t------------------~~~~~~~~~----------------~ 65 (253)
..|++||++|+||||++-.|+...... +....-++ ......... .
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 579999999999999998876543211 10000000 000000000 0
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEe
Q 025391 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (253)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~ 145 (253)
.++.++++|||||... .......++...+... .++-+++|++++...+ +...+....+.++ ..-+++|
T Consensus 81 ~~~~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~~~--~~~~~~~~~~~~~-----~~~lIlT 148 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP---RDEELLEELKKLLEAL--NPDEVHLVLSATMGQE--DLEQALAFYEAFG-----IDGLILT 148 (196)
T ss_dssp HTTSSEEEEEE-SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGGGGGH--HHHHHHHHHHHSS-----TCEEEEE
T ss_pred hcCCCEEEEecCCcch---hhHHHHHHHHHHhhhc--CCccceEEEecccChH--HHHHHHHHhhccc-----CceEEEE
Confidence 1345799999999863 2344456666666554 5778999999874433 3223333334333 4567799
Q ss_pred CCCCCCC
Q 025391 146 GGDELED 152 (253)
Q Consensus 146 k~D~~~~ 152 (253)
|.|....
T Consensus 149 KlDet~~ 155 (196)
T PF00448_consen 149 KLDETAR 155 (196)
T ss_dssp STTSSST
T ss_pred eecCCCC
Confidence 9999763
No 297
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.83 E-value=7.5e-08 Score=84.95 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=72.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh------CCCCccccCCCCc-----------cceeeeeeeeEe---------------
Q 025391 18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSSG-----------VTSTCEMQRTVL--------------- 65 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~------g~~~~~~~~~~~~-----------~t~~~~~~~~~~--------------- 65 (253)
++..|+++|++|+||||++..|+ |..+.....++.. ......++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 34789999999999999999987 4443222221110 000011111000
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEE
Q 025391 66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (253)
Q Consensus 66 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~ 144 (253)
..+.+++||||||... ..+....++...... ..||.++||+|++..... ....+.+.+.. .+.-+|+
T Consensus 179 ~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~-----~~~g~Il 246 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGSIGQAA--EAQAKAFKDSV-----DVGSVII 246 (429)
T ss_pred HhCCCCEEEEECCCCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccccChhH--HHHHHHHHhcc-----CCcEEEE
Confidence 0256899999999754 234455666655433 367899999998644332 33344444332 3688999
Q ss_pred eCCCCCC
Q 025391 145 TGGDELE 151 (253)
Q Consensus 145 ~k~D~~~ 151 (253)
||.|...
T Consensus 247 TKlD~~a 253 (429)
T TIGR01425 247 TKLDGHA 253 (429)
T ss_pred ECccCCC
Confidence 9999863
No 298
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.83 E-value=2.8e-08 Score=98.55 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCC------CCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCC----cHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG----SEFV 89 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~----~~~~ 89 (253)
+=.+|||++|+||||+++.- |...+..... ..+.|..| ..+-....+++||+|..-+..+ ....
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c-----~wwf~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNC-----DWWFTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCccc-----ceEecCCEEEEcCCCccccCCCcccccHHH
Confidence 45789999999999999886 6654332210 11223323 3344567789999997644432 2334
Q ss_pred HHHHHHHHHhh--cCCccEEEEEEeCCCCCC--HH--------HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhH
Q 025391 90 GKEIVKCIGMA--KDGIHAVLVVFSVRSRFS--QE--------EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL 157 (253)
Q Consensus 90 ~~~~~~~~~~~--~~~~~~~l~v~d~~~~~~--~~--------~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~ 157 (253)
+..+...+... ...++++|+++++.+-++ .. -+..+..+...+|-. .|++||+||+|.+. -+
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~----GF 259 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLA----GF 259 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhc----CH
Confidence 66666666544 245799999999874432 22 155566677777765 49999999999996 35
Q ss_pred HHHHc
Q 025391 158 EDYLG 162 (253)
Q Consensus 158 ~~~~~ 162 (253)
.+|+.
T Consensus 260 ~~~f~ 264 (1169)
T TIGR03348 260 EEFFA 264 (1169)
T ss_pred HHHHH
Confidence 55555
No 299
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.83 E-value=1.1e-08 Score=78.75 Aligned_cols=57 Identities=26% Similarity=0.378 Sum_probs=40.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (253)
...+|+++|.+|+|||||+|+|++......+.. .+.|...... . .+..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~~--~--~~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQEV--K--LDNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCC-CCcccceEEE--E--ecCCEEEEECCCC
Confidence 458999999999999999999999865443322 2333333222 1 2356899999996
No 300
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.83 E-value=6.4e-09 Score=82.69 Aligned_cols=57 Identities=30% Similarity=0.327 Sum_probs=38.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccc------c-CCCCccceeeeeeeeEeeCCeEEEEEeCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS------R-ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~------~-~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (253)
..+++++|.+|+|||||+|+|++...... . ....+.|........ +..+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 36899999999999999999998654221 1 122234444333222 225799999996
No 301
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.82 E-value=2.4e-08 Score=84.58 Aligned_cols=65 Identities=23% Similarity=0.355 Sum_probs=47.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE 87 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 87 (253)
...+|+++|.+|+|||||+|+|+|......+.. .++|....... -+..+.++||||+..+....+
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~~~----~~~~~~l~DtPGi~~~~~~~~ 184 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNR-PGVTKAQQWIK----LGKGLELLDTPGILWPKLEDQ 184 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCC-CCeEEEEEEEE----eCCcEEEEECCCcCCCCCCcH
Confidence 457999999999999999999999876444432 34555443222 245689999999987665444
No 302
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=4e-08 Score=83.32 Aligned_cols=127 Identities=17% Similarity=0.299 Sum_probs=81.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeee---------------E----e-------------
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT---------------V----L------------- 65 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~---------------~----~------------- 65 (253)
..+-|+++|+-..||||+++.|+..+.+.....+.+ |+....... . +
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEP-Ttd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEP-TTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCC-CcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 346899999999999999999999887533322221 111111100 0 0
Q ss_pred --------eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCC--HHHHHHHHHHHHHhccc
Q 025391 66 --------KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS--QEEEAALHSLQTLFGKK 135 (253)
Q Consensus 66 --------~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~~l~~l~~~~g~~ 135 (253)
.--..+++|||||+.+.....-.....+...+.++..++|.+|+++|+- .++ ++-..++..++ |..
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~h-KLDIsdEf~~vi~aLk---G~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAH-KLDISDEFKRVIDALK---GHE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechh-hccccHHHHHHHHHhh---CCc
Confidence 0001589999999975432211122345667788889999999999985 444 44455555544 332
Q ss_pred ccCeEEEEEeCCCCCC
Q 025391 136 IFDYMIVVFTGGDELE 151 (253)
Q Consensus 136 ~~~~~ivv~~k~D~~~ 151 (253)
..+-||+||+|.+.
T Consensus 212 --dkiRVVLNKADqVd 225 (532)
T KOG1954|consen 212 --DKIRVVLNKADQVD 225 (532)
T ss_pred --ceeEEEeccccccC
Confidence 46899999999986
No 303
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.81 E-value=1.1e-07 Score=91.98 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=81.7
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC-----------------eEEEEEe
Q 025391 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-----------------QVVNVID 75 (253)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liD 75 (253)
+.....-.--++++ +||||+.+|.+..+ .....+++|.+.....++.... ..+.|||
T Consensus 459 ~~~~~~~~~~~~~~----~KTtLLD~iR~t~v--~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiD 532 (1049)
T PRK14845 459 TTETHNFIANGILV----HNTTLLDKIRKTRV--AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFID 532 (1049)
T ss_pred EeccCcceeeeeec----ccccHHHHHhCCCc--ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEE
Confidence 34333333344554 39999999999987 3345678888877776654211 1389999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
|||+.. +..........+|++++|+|+++.+.+.....+..+... + .|+++++||+|...
T Consensus 533 TPGhe~-----------F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-~----iPiIVViNKiDL~~ 592 (1049)
T PRK14845 533 TPGHEA-----------FTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-K----TPFVVAANKIDLIP 592 (1049)
T ss_pred CCCcHH-----------HHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-C----CCEEEEEECCCCcc
Confidence 999743 223333445678999999999888888887777766553 2 47999999999864
No 304
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.80 E-value=1.2e-07 Score=74.42 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=61.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEE-EeCCCCCCCCCCcHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNV-IDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l-iDtpG~~~~~~~~~~~~~~~~~ 95 (253)
.+.-.++|+|+||+|||||++.|+|...+..+. +.. ++..+.+ ...+. -++++.-.-.++
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~----i~~----------~g~~i~~~~q~~~----LSgGq~qrv~la- 83 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN----DEW----------DGITPVYKPQYID----LSGGELQRVAIA- 83 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcE----EEE----------CCEEEEEEcccCC----CCHHHHHHHHHH-
Confidence 344699999999999999999999986543332 111 1111111 11121 122332112222
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccCeEEEEEeCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l-~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
......| .+++++++++.++......+ ..+.+..... ..++++++|...
T Consensus 84 --ral~~~p-~lllLDEPts~LD~~~~~~l~~~l~~~~~~~--~~tiiivsH~~~ 133 (177)
T cd03222 84 --AALLRNA-TFYLFDEPSAYLDIEQRLNAARAIRRLSEEG--KKTALVVEHDLA 133 (177)
T ss_pred --HHHhcCC-CEEEEECCcccCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCHH
Confidence 2222344 67778899889998885443 4444432111 148889999654
No 305
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.80 E-value=6.2e-09 Score=74.96 Aligned_cols=103 Identities=20% Similarity=0.217 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.||++||..|+|||||.++|-|...... .|. .+++ +. -..|||||-+-.. +.+-.++..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk------KTQ-----Ave~-~d--~~~IDTPGEy~~~-------~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK------KTQ-----AVEF-ND--KGDIDTPGEYFEH-------PRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc------ccc-----eeec-cC--ccccCCchhhhhh-------hHHHHHHHH
Confidence 5899999999999999999998854221 121 1221 11 1358999976321 333344544
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....+|++++|..++++-+.-..- |-....+++|=|+||.|+.+
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~--------f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPG--------FLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred HhhccceeeeeecccCccccCCcc--------cccccccceEEEEecccccc
Confidence 556789999998877543322211 11222346999999999996
No 306
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.9e-08 Score=91.98 Aligned_cols=121 Identities=25% Similarity=0.367 Sum_probs=86.8
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc--------------CCCCccceeeeeeeeEeeCCeEEEEEeCCC
Q 025391 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78 (253)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG 78 (253)
+..+....+|.|+.+-..|||||+.+|+......+. ....++|......+.. .++..+++||+||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~-~~~~~~nlidspg 81 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL-HKDYLINLIDSPG 81 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc-cCceEEEEecCCC
Confidence 345556689999999999999999998766542222 1234677777666543 3678999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
+.|+. .++..+...+ |++++++|+..........+++..... | ...++|+||+|.+
T Consensus 82 hvdf~-------sevssas~l~----d~alvlvdvvegv~~qt~~vlrq~~~~-~----~~~~lvinkidrl 137 (887)
T KOG0467|consen 82 HVDFS-------SEVSSASRLS----DGALVLVDVVEGVCSQTYAVLRQAWIE-G----LKPILVINKIDRL 137 (887)
T ss_pred ccchh-------hhhhhhhhhc----CCcEEEEeeccccchhHHHHHHHHHHc-c----CceEEEEehhhhH
Confidence 99987 3333333333 889999999889998888888733221 1 2589999999955
No 307
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=8.2e-08 Score=75.17 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=63.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeee-ee-EeeCCeEEEEEeCCCCCCCC--------CCcH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RT-VLKDGQVVNVIDTPGLFDFS--------AGSE 87 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~-~~-~~~~~~~~~liDtpG~~~~~--------~~~~ 87 (253)
+.-.++|+|+||+|||||++.|+|...+..+. +....... .. ......-..+...|.++... ++++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~----i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE----IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE----EEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 34689999999999999999999986543331 11100000 00 00011122333344443321 1111
Q ss_pred HHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccCeEEEEEeCCC
Q 025391 88 FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l-~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
. ++ .........+| -++++++++..++......+ +.+.+.... ..++|+++|.-
T Consensus 101 ~--qr-v~laral~~~p-~illlDEPt~~LD~~~~~~l~~~l~~~~~~---g~tiii~th~~ 155 (173)
T cd03230 101 K--QR-LALAQALLHDP-ELLILDEPTSGLDPESRREFWELLRELKKE---GKTILLSSHIL 155 (173)
T ss_pred H--HH-HHHHHHHHcCC-CEEEEeCCccCCCHHHHHHHHHHHHHHHHC---CCEEEEECCCH
Confidence 1 11 11112222333 78888999989999885555 444443222 25889998854
No 308
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.79 E-value=1.9e-08 Score=78.65 Aligned_cols=59 Identities=25% Similarity=0.387 Sum_probs=41.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (253)
...++++++|.+|+|||||+|.|++......+ ...+.|........ ...+.++||||++
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~----~~~~~~iDtpG~~ 171 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKI----SPGIYLLDTPGIL 171 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEe----cCCEEEEECCCCC
Confidence 34479999999999999999999987653222 22234444433322 2568899999974
No 309
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.79 E-value=2.3e-08 Score=74.61 Aligned_cols=130 Identities=17% Similarity=0.099 Sum_probs=85.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
...-.++|+++|.+..|||||+-...|...-.......|+.......++. .-...+.+||..|. +++.
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-~t~IsfSIwdlgG~-----------~~~~ 83 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-GTDISFSIWDLGGQ-----------REFI 83 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEec-ceEEEEEEEecCCc-----------Hhhh
Confidence 33445899999999999999998887765422222222332222222221 12346789999887 5666
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHH
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE 158 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~ 158 (253)
.++..+..++-++||++|++.+.+... ..+|.+...|..-..--++|.||-|.+-.-+....
T Consensus 84 n~lPiac~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q 145 (205)
T KOG1673|consen 84 NMLPIACKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQ 145 (205)
T ss_pred ccCceeecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccceEEeccchHhhhcCCHHHH
Confidence 777777778889999999997766544 55677776665533346778999998863343333
No 310
>PRK12288 GTPase RsgA; Reviewed
Probab=98.79 E-value=2.5e-08 Score=86.29 Aligned_cols=60 Identities=27% Similarity=0.433 Sum_probs=41.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCC------ccceeeeeeeeEeeCCeEEEEEeCCCCCCCCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (253)
.++|+|.+|||||||+|+|++.....++..+. .+|+....+... .+ ..++||||+-.+..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~~l 272 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREFGL 272 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCcccC
Confidence 58999999999999999999987655543322 134444433332 22 35999999977654
No 311
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=7e-08 Score=88.11 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=101.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-----------------eCCeEEEEEeCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------KDGQVVNVIDTPGLF 80 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtpG~~ 80 (253)
+.+.++|+|+..+|||-|+..|.+..+..+ ..+++|......+++. .+-..+.+|||||+.
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqeg--eaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEG--EAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccc--cccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 457899999999999999999999876333 3445554443333221 122368899999975
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC----Chhh
Q 025391 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED----NDET 156 (253)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~----~~~~ 156 (253)
.| ...-++-..-.|.+|+|+|+.+.+.+.....++.|+.. ..|+||.+||.|.+-. .+..
T Consensus 552 sF-----------tnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~r-----ktpFivALNKiDRLYgwk~~p~~~ 615 (1064)
T KOG1144|consen 552 SF-----------TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR-----KTPFIVALNKIDRLYGWKSCPNAP 615 (1064)
T ss_pred hh-----------hhhhhccccccceEEEEeehhccCCcchhHHHHHHHhc-----CCCeEEeehhhhhhcccccCCCch
Confidence 43 23323333445899999999989999888888877764 2489999999999821 1345
Q ss_pred HHHHHcccCCchhhhhHHHhhhHHHHHHHcC
Q 025391 157 LEDYLGRECPKPLKKGATKLRDQQFEVDSLK 187 (253)
Q Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 187 (253)
+.+.+.+.......+....+..+...|.+.|
T Consensus 616 i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQg 646 (1064)
T KOG1144|consen 616 IVEALKKQKKDVQNEFKERLNNIIVEFAEQG 646 (1064)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcc
Confidence 5555554555555555555666666665533
No 312
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.78 E-value=3.7e-08 Score=82.97 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=45.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 86 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 86 (253)
...+|+++|.+|+|||||+|+|++......+.. .+.|....... -+..+.++||||+.......
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~----~~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNR-PGVTKGQQWIK----LSDGLELLDTPGILWPKFED 180 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeecceEEEE----eCCCEEEEECCCcccCCCCc
Confidence 457999999999999999999999876545433 34454443222 23468999999996554433
No 313
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.77 E-value=1.3e-07 Score=83.86 Aligned_cols=141 Identities=18% Similarity=0.199 Sum_probs=96.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC---------------------------------------------
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS--------------------------------------------- 52 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~--------------------------------------------- 52 (253)
+-+||++||.-.+||||.+..|+...+|+-+...-
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 34799999999999999999999888776553311
Q ss_pred -------ccceeeeeeeeEeeCC---eEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHH
Q 025391 53 -------GVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120 (253)
Q Consensus 53 -------~~t~~~~~~~~~~~~~---~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~ 120 (253)
|.|+.....+... +| .+.+++|.||+..+-.. ..++...|.++-..+...|.++|+|+.-+ ..+.+
T Consensus 387 Mr~sVr~GkTVSnEvIsltV-KGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAE 464 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLNV-KGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAE 464 (980)
T ss_pred HHhcccCCcccccceEEEee-cCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccchh
Confidence 3444444443332 33 47899999999865432 24466777788888889999999999765 45544
Q ss_pred HHHHHHHHHHHhcccccCeEEEEEeCCCCCCC---ChhhHHHHHc
Q 025391 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELED---NDETLEDYLG 162 (253)
Q Consensus 121 ~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~---~~~~~~~~~~ 162 (253)
-..+-..+... ++..+.+|+|+||.|+.+. ++..+.++++
T Consensus 465 RSnVTDLVsq~--DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 465 RSIVTDLVSQM--DPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred hhhHHHHHHhc--CCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 43333333333 2334689999999998753 2556666665
No 314
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=9.1e-08 Score=75.27 Aligned_cols=130 Identities=18% Similarity=0.108 Sum_probs=64.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC-ccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHH-------
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFV------- 89 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~------- 89 (253)
+.-.++|+|+||+|||||++.|+|...+..+.... +................-..+.+.|.++......+.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G 104 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGG 104 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHH
Confidence 34689999999999999999999986543331110 0000000000000011122334445544221111110
Q ss_pred HHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 025391 90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
.++...........| -++++++++..++......+..+...+... ...++++++|...
T Consensus 105 ~~qr~~la~al~~~p-~llilDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~ 162 (178)
T cd03229 105 QQQRVALARALAMDP-DVLLLDEPTSALDPITRREVRALLKSLQAQ-LGITVVLVTHDLD 162 (178)
T ss_pred HHHHHHHHHHHHCCC-CEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH
Confidence 011111222333444 677788998899998865554433322211 0258999999643
No 315
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3.3e-08 Score=87.15 Aligned_cols=60 Identities=10% Similarity=0.043 Sum_probs=43.9
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHcccCCc
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPK 167 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~ 167 (253)
.+..|| +|+++++|++++-....||+...... +.++++++|+..+. +..+.+++.....+
T Consensus 213 lf~~pD-lLLLDEPTNhLDv~av~WLe~yL~t~-----~~T~liVSHDr~FL--n~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 213 LFAKPD-LLLLDEPTNHLDVVAVAWLENYLQTW-----KITSLIVSHDRNFL--NTVCTDIIHLENLK 272 (582)
T ss_pred HhcCCC-EEeecCCcccchhHHHHHHHHHHhhC-----CceEEEEeccHHHH--HHHHHHHHHHhhhh
Confidence 345565 55667888888887777776655543 36999999999999 88888888754433
No 316
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4.2e-08 Score=87.22 Aligned_cols=113 Identities=20% Similarity=0.189 Sum_probs=78.7
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCcc-ccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 025391 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE 92 (253)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 92 (253)
...+|++.+++||++|+|||||+++|.....-. .....+++|. ...+.++++++.+|.-.
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv-------vsgK~RRiTflEcp~Dl------------ 124 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV-------VSGKTRRITFLECPSDL------------ 124 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE-------eecceeEEEEEeChHHH------------
Confidence 344566888899999999999999997653211 1122333333 22467899999999432
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++. ...-+|.+|+++|.+-.+..+...+|+.+... | .+.++-|+||.|.+.
T Consensus 125 -~~miD-vaKIaDLVlLlIdgnfGfEMETmEFLnil~~H-G---mPrvlgV~ThlDlfk 177 (1077)
T COG5192 125 -HQMID-VAKIADLVLLLIDGNFGFEMETMEFLNILISH-G---MPRVLGVVTHLDLFK 177 (1077)
T ss_pred -HHHHh-HHHhhheeEEEeccccCceehHHHHHHHHhhc-C---CCceEEEEeeccccc
Confidence 12222 12345899999999888888888888877664 4 347999999999996
No 317
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.75 E-value=1.7e-07 Score=71.17 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=59.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
+.-.++|+|+||+|||||++.|+|...+..+. +.. ++ ..+.++. .+ ++++. +++ ..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~----i~~----------~~~~~i~~~~--~l----S~G~~--~rv-~l 81 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI----VTW----------GSTVKIGYFE--QL----SGGEK--MRL-AL 81 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceE----EEE----------CCeEEEEEEc--cC----CHHHH--HHH-HH
Confidence 34689999999999999999999985433221 111 11 1222221 11 22222 222 12
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
.......| .++++++++..++...+..+..+.+..+ .++++++|.-
T Consensus 82 aral~~~p-~illlDEP~~~LD~~~~~~l~~~l~~~~-----~til~~th~~ 127 (144)
T cd03221 82 AKLLLENP-NLLLLDEPTNHLDLESIEALEEALKEYP-----GTVILVSHDR 127 (144)
T ss_pred HHHHhcCC-CEEEEeCCccCCCHHHHHHHHHHHHHcC-----CEEEEEECCH
Confidence 22233444 5777888888999988666544333332 4888888863
No 318
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.75 E-value=5.7e-08 Score=84.84 Aligned_cols=151 Identities=20% Similarity=0.259 Sum_probs=98.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc-------------CCCCccceeeeeeeeEeeC----CeEEEEEeCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLKD----GQVVNVIDTPGLF 80 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~----~~~~~liDtpG~~ 80 (253)
+.++..||.+-..|||||..+|+........ ....|+|.........+.. ...+.+|||||+.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 3478899999999999999999765431111 1124677776666555432 2478899999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCh----hh
Q 025391 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND----ET 156 (253)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~----~~ 156 (253)
|+. .+..+.+..| .+.|+|+|++.....+.. .+.... +..+ --++.|+||.|+...++ ..
T Consensus 88 DFs-------YEVSRSLAAC----EGalLvVDAsQGveAQTl--AN~YlA-le~~--LeIiPViNKIDLP~Adpervk~e 151 (603)
T COG0481 88 DFS-------YEVSRSLAAC----EGALLVVDASQGVEAQTL--ANVYLA-LENN--LEIIPVLNKIDLPAADPERVKQE 151 (603)
T ss_pred ceE-------EEehhhHhhC----CCcEEEEECccchHHHHH--HHHHHH-HHcC--cEEEEeeecccCCCCCHHHHHHH
Confidence 987 5666777777 588999999866665542 222222 2222 35999999999986554 35
Q ss_pred HHHHHcccCCchhhhhHHHhhhHHHHHH
Q 025391 157 LEDYLGRECPKPLKKGATKLRDQQFEVD 184 (253)
Q Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 184 (253)
+++.+..+....+.-+.+..-.++++++
T Consensus 152 Ie~~iGid~~dav~~SAKtG~gI~~iLe 179 (603)
T COG0481 152 IEDIIGIDASDAVLVSAKTGIGIEDVLE 179 (603)
T ss_pred HHHHhCCCcchheeEecccCCCHHHHHH
Confidence 6677776555555544444444444443
No 319
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.5e-07 Score=81.74 Aligned_cols=124 Identities=22% Similarity=0.307 Sum_probs=92.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccc-cCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.|+..|+--.|||||+.+++|...-.. .....+.|.+..+++... .+..+.+||.||+.+ .+..++ .
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~----------~i~~mi-a 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD----------FISNLL-A 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH----------HHHHHH-h
Confidence 578899999999999999998753111 123567888888888876 445899999999963 233333 3
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHc
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~ 162 (253)
...+.|..++|+++++.++....+.+..+.. ||.. +.+||+||+|... +..++..+.
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi~---~giivltk~D~~d--~~r~e~~i~ 126 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGIK---NGIIVLTKADRVD--EARIEQKIK 126 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCCC---ceEEEEecccccc--HHHHHHHHH
Confidence 3467899999999988999999888866654 6754 7899999999997 544444443
No 320
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=9.5e-08 Score=86.36 Aligned_cols=121 Identities=22% Similarity=0.258 Sum_probs=81.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCC---------------CccceeeeeeeeEe----eCCeEEEEE
Q 025391 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---------------SGVTSTCEMQRTVL----KDGQVVNVI 74 (253)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~---------------~~~t~~~~~~~~~~----~~~~~~~li 74 (253)
..+....+|+++|+-++|||+|+..|.++..+...... .+.+.+........ .+..-++++
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 34455688999999999999999999988764432111 12222222221111 123468899
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
||||+.++. .+..+.+. -+|++++|+|+..........+++...+. ..++++|+||.|.+
T Consensus 203 DTPGHVnF~-------DE~ta~l~----~sDgvVlvvDv~EGVmlntEr~ikhaiq~-----~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 203 DTPGHVNFS-------DETTASLR----LSDGVVLVVDVAEGVMLNTERIIKHAIQN-----RLPIVVVINKVDRL 262 (971)
T ss_pred cCCCcccch-------HHHHHHhh----hcceEEEEEEcccCceeeHHHHHHHHHhc-----cCcEEEEEehhHHH
Confidence 999999876 34444443 44899999999878887776666554432 24799999999987
No 321
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.74 E-value=1.1e-07 Score=73.76 Aligned_cols=115 Identities=12% Similarity=0.104 Sum_probs=60.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeee-eeeE--eeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTV--LKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
+.-.++|+|+||+|||||++.|+|...+..+. +...... .... ......+.++. . -++++. +..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~----v~~~g~~~~~~~~~~~~~~~i~~~~--q----LS~G~~---qrl 91 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGE----ILVDGKEVSFASPRDARRAGIAMVY--Q----LSVGER---QMV 91 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE----EEECCEECCcCCHHHHHhcCeEEEE--e----cCHHHH---HHH
Confidence 44689999999999999999999986543331 1110000 0000 00001111111 0 122232 111
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccCeEEEEEeCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l-~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
.........| -+++++++++.++...+..+ +.+.+.... ..++|+++|.-.
T Consensus 92 ~laral~~~p-~illlDEP~~~LD~~~~~~l~~~l~~~~~~---~~tiii~sh~~~ 143 (163)
T cd03216 92 EIARALARNA-RLLILDEPTAALTPAEVERLFKVIRRLRAQ---GVAVIFISHRLD 143 (163)
T ss_pred HHHHHHhcCC-CEEEEECCCcCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHH
Confidence 2222333444 66777999989999885555 444443211 258888888643
No 322
>PRK12289 GTPase RsgA; Reviewed
Probab=98.73 E-value=1.9e-08 Score=87.13 Aligned_cols=60 Identities=25% Similarity=0.334 Sum_probs=40.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC------ccceeeeeeeeEeeCCeEEEEEeCCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (253)
..++|+|++|+|||||+|+|++......+..+. .+|........ ..+ ..|+||||+..+.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l--~~g--~~liDTPG~~~~~ 238 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL--PNG--GLLADTPGFNQPD 238 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--CCC--cEEEeCCCccccc
Confidence 358999999999999999999876654443222 13444433322 122 3799999997644
No 323
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.73 E-value=6.7e-08 Score=79.10 Aligned_cols=125 Identities=16% Similarity=0.128 Sum_probs=78.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCC-CCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
...+++++.|.+++|||+|+|.++.......... ..+.|...+.+ .-+..++++|.||+.-.. -+....+.+..
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f----~v~~~~~~vDlPG~~~a~-y~~~~~~d~~~ 208 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF----HVGKSWYEVDLPGYGRAG-YGFELPADWDK 208 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee----eccceEEEEecCCccccc-CCccCcchHhH
Confidence 4558999999999999999999988765322222 33444433322 236789999999954222 12222233434
Q ss_pred HHHhhcC---CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKD---GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~---~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+...++- ..-.+++++|++.++.+.|...++|+.+. ..|..+|+||+|...
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQK 262 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc-----CCCeEEeeehhhhhh
Confidence 4332221 11234455566667777787778877663 248999999999874
No 324
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.73 E-value=3.8e-08 Score=84.20 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=70.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc------CCCCc-----------cceeeeeeeeE---------------
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSG-----------VTSTCEMQRTV--------------- 64 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~------~~~~~-----------~t~~~~~~~~~--------------- 64 (253)
.++..|+++|+||+||||++..|++....... .+... ......+....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998765321111 11100 00001111000
Q ss_pred -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh----cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCe
Q 025391 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139 (253)
Q Consensus 65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~ 139 (253)
...+.++++|||||..... .....++..+...+ ...||..++|++++....... ....+.+.+ ..
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~---~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~--~a~~f~~~~-----~~ 261 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNK---TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS--QAKAFHEAV-----GL 261 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCC---HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH--HHHHHHhhC-----CC
Confidence 0134579999999986533 22334444444322 346788999999984333222 222222222 35
Q ss_pred EEEEEeCCCCCC
Q 025391 140 MIVVFTGGDELE 151 (253)
Q Consensus 140 ~ivv~~k~D~~~ 151 (253)
.-+|+||.|...
T Consensus 262 ~giIlTKlD~t~ 273 (318)
T PRK10416 262 TGIILTKLDGTA 273 (318)
T ss_pred CEEEEECCCCCC
Confidence 789999999764
No 325
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.71 E-value=1e-06 Score=75.59 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=21.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
..+...|+|+|++|+|||||++.|..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999998643
No 326
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.71 E-value=2.8e-07 Score=77.91 Aligned_cols=129 Identities=15% Similarity=0.174 Sum_probs=89.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcc-----------c---c-----------------CCCCccceeeeeeeeEee
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFK-----------S---R-----------------ASSSGVTSTCEMQRTVLK 66 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~-----------~---~-----------------~~~~~~t~~~~~~~~~~~ 66 (253)
..+|++-||.-.-||||||-.|+-..... + + ....++|....+.++..
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT- 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST- 83 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-
Confidence 44899999999999999998887654200 0 0 00127888888877765
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeC
Q 025391 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (253)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k 146 (253)
..+++.+.||||+.+ ..+++..- ..-+|+.|+++|+...+-...+.. ..+...+|-. ++++.+||
T Consensus 84 ~KRkFIiADTPGHeQ----------YTRNMaTG-ASTadlAIlLVDAR~Gvl~QTrRH-s~I~sLLGIr---hvvvAVNK 148 (431)
T COG2895 84 EKRKFIIADTPGHEQ----------YTRNMATG-ASTADLAILLVDARKGVLEQTRRH-SFIASLLGIR---HVVVAVNK 148 (431)
T ss_pred ccceEEEecCCcHHH----------Hhhhhhcc-cccccEEEEEEecchhhHHHhHHH-HHHHHHhCCc---EEEEEEee
Confidence 678999999999842 22233322 234589999999875665555433 4566667754 89999999
Q ss_pred CCCCCCChhhHHHHHc
Q 025391 147 GDELEDNDETLEDYLG 162 (253)
Q Consensus 147 ~D~~~~~~~~~~~~~~ 162 (253)
+|+..-..+.++.+..
T Consensus 149 mDLvdy~e~~F~~I~~ 164 (431)
T COG2895 149 MDLVDYSEEVFEAIVA 164 (431)
T ss_pred ecccccCHHHHHHHHH
Confidence 9999655666666655
No 327
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.70 E-value=1.5e-07 Score=73.29 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=62.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCe--EEEEEeCCC--CCCCCCCcHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPG--LFDFSAGSEFVGKEI 93 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG--~~~~~~~~~~~~~~~ 93 (253)
+.-.++|+|+||+|||||++.|+|...+..+....... .....+.. ... ..++.|--- ....-++++...-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--~~i~~~~q-~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--EDLLFLPQ-RPYLPLGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--ceEEEECC-CCccccccHHHHhhccCCCCCCHHHHHHHHH
Confidence 44689999999999999999999986544332111100 01111110 000 001111000 011112222211122
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 025391 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
.......| -+++++++++.++......+..+...++ .+++++||...
T Consensus 103 ---aral~~~p-~~lllDEPt~~LD~~~~~~l~~~l~~~~-----~tiiivsh~~~ 149 (166)
T cd03223 103 ---ARLLLHKP-KFVFLDEATSALDEESEDRLYQLLKELG-----ITVISVGHRPS 149 (166)
T ss_pred ---HHHHHcCC-CEEEEECCccccCHHHHHHHHHHHHHhC-----CEEEEEeCChh
Confidence 22223444 6777888888999988665544433332 48999999743
No 328
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.69 E-value=3e-08 Score=81.99 Aligned_cols=60 Identities=27% Similarity=0.305 Sum_probs=40.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCC------CccceeeeeeeeEeeCCeEEEEEeCCCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS------SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (253)
..++++|++|+|||||+|.|++.....++... ..+|+....... . ...++||||+..+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccCC
Confidence 58999999999999999999997654433221 123444433332 2 237999999986553
No 329
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.69 E-value=5.2e-08 Score=84.30 Aligned_cols=122 Identities=21% Similarity=0.228 Sum_probs=71.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCC-CCccceeeeeee----------------------------eEeeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQR----------------------------TVLKDG 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~-~~~~t~~~~~~~----------------------------~~~~~~ 68 (253)
+...|+||||+||||||++..|+.......+.. .+-+|+++.+.. +....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 367999999999999999998877644112211 111232222111 111245
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
.++++|||.|.... +.....++...+..+ .+.-+.||++++.... .++.+.+.|+.- +.--+++||.|
T Consensus 282 ~d~ILVDTaGrs~~---D~~~i~el~~~~~~~--~~i~~~Lvlsat~K~~-----dlkei~~~f~~~--~i~~~I~TKlD 349 (407)
T COG1419 282 CDVILVDTAGRSQY---DKEKIEELKELIDVS--HSIEVYLVLSATTKYE-----DLKEIIKQFSLF--PIDGLIFTKLD 349 (407)
T ss_pred CCEEEEeCCCCCcc---CHHHHHHHHHHHhcc--ccceEEEEEecCcchH-----HHHHHHHHhccC--CcceeEEEccc
Confidence 68999999998643 233445666666555 2334556667662222 333444445432 35678899999
Q ss_pred CCC
Q 025391 149 ELE 151 (253)
Q Consensus 149 ~~~ 151 (253)
...
T Consensus 350 ET~ 352 (407)
T COG1419 350 ETT 352 (407)
T ss_pred ccC
Confidence 986
No 330
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.69 E-value=5.6e-08 Score=91.10 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=32.4
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 102 DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 102 ~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..| -+|++++++++++.....++..+...++ .++|++||...+.
T Consensus 173 ~~P-~lLLLDEPt~~LD~~~~~~L~~~L~~~~-----~tvlivsHd~~~l 216 (635)
T PRK11147 173 SNP-DVLLLDEPTNHLDIETIEWLEGFLKTFQ-----GSIIFISHDRSFI 216 (635)
T ss_pred cCC-CEEEEcCCCCccCHHHHHHHHHHHHhCC-----CEEEEEeCCHHHH
Confidence 344 5788899999999999777766655443 4899999976653
No 331
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.69 E-value=3.5e-08 Score=85.59 Aligned_cols=121 Identities=21% Similarity=0.155 Sum_probs=68.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCC------ccccCCCC---cc--------ceeeeeeeeE----------e---eCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRA------FKSRASSS---GV--------TSTCEMQRTV----------L---KDG 68 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~------~~~~~~~~---~~--------t~~~~~~~~~----------~---~~~ 68 (253)
+.+|+|+|++|+||||++..|++... .....++. .. ...+...... . ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 46899999999999999999874321 00011110 00 0000000000 0 013
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
.+++||||||.... ......++.+.+... .||.++||++++.... .....++. |.. ....-+|+||.|
T Consensus 321 ~DvVLIDTaGRs~k---d~~lm~EL~~~lk~~--~PdevlLVLsATtk~~-d~~~i~~~----F~~--~~idglI~TKLD 388 (436)
T PRK11889 321 VDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMKSK-DMIEIITN----FKD--IHIDGIVFTKFD 388 (436)
T ss_pred CCEEEEeCccccCc---CHHHHHHHHHHHhhc--CCCeEEEEECCccChH-HHHHHHHH----hcC--CCCCEEEEEccc
Confidence 58899999998542 233445666655533 4678888888762221 11333333 322 235789999999
Q ss_pred CCC
Q 025391 149 ELE 151 (253)
Q Consensus 149 ~~~ 151 (253)
...
T Consensus 389 ET~ 391 (436)
T PRK11889 389 ETA 391 (436)
T ss_pred CCC
Confidence 986
No 332
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.68 E-value=9.7e-08 Score=80.83 Aligned_cols=60 Identities=33% Similarity=0.401 Sum_probs=40.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCC----C--ccceeeeeeeeEeeCCeEEEEEeCCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS----S--GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~----~--~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (253)
..++++|++|+|||||+|+|+|...+..+... . .+|........ . ....++||||+.++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~---~-~~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPL---P-GGGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEc---C-CCCEEEECCCCCccC
Confidence 68999999999999999999998765544221 1 12333322222 1 123799999996644
No 333
>PRK00098 GTPase RsgA; Reviewed
Probab=98.68 E-value=1e-07 Score=81.06 Aligned_cols=60 Identities=30% Similarity=0.369 Sum_probs=40.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC------ccceeeeeeeeEeeCCeEEEEEeCCCCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (253)
...++|+|++|+|||||+|+|+|......+.... ..|........ .....++||||+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~----~~~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL----PGGGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc----CCCcEEEECCCcCcc
Confidence 3579999999999999999999987654443221 12322222222 123489999999754
No 334
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.67 E-value=4.6e-08 Score=81.68 Aligned_cols=61 Identities=28% Similarity=0.329 Sum_probs=40.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCC------CCccceeeeeeeeEeeCCeEEEEEeCCCCCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (253)
....+++|.+|+|||||+|+|.+.....++.. ...+|+.......+ ..-.|+||||+.++.
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~----~gG~iiDTPGf~~~~ 230 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP----GGGWIIDTPGFRSLG 230 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC----CCCEEEeCCCCCccC
Confidence 35889999999999999999998654333211 11234444444332 233689999997654
No 335
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=2.6e-07 Score=82.55 Aligned_cols=132 Identities=20% Similarity=0.256 Sum_probs=85.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCCc-----------------------------cccCCCCccceeeeeeeeEe
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVL 65 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~ 65 (253)
.+.+-+.++++|+..+|||||+-.|+-.-.. .......|+|+......++
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe- 251 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE- 251 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe-
Confidence 3445589999999999999999887543220 0011224677777766666
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC-----CCCHH--HHHHHHHHHHHhcccccC
Q 025391 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-----RFSQE--EEAALHSLQTLFGKKIFD 138 (253)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-----~~~~~--~~~~l~~l~~~~g~~~~~ 138 (253)
.....++++|+||+-+|-. .++... ..+|+.++|+|++. .|++. .++....+ +.+|- .
T Consensus 252 s~~~~~tliDaPGhkdFi~----------nmi~g~-sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~ll-r~Lgi---~ 316 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIP----------NMISGA-SQADVAVLVVDASTGEFESGFDPGGQTREHALLL-RSLGI---S 316 (603)
T ss_pred cCceeEEEecCCCccccch----------hhhccc-cccceEEEEEECCcchhhhccCCCCchHHHHHHH-HHcCc---c
Confidence 3677899999999876543 333222 45689999998762 23322 25554444 44564 4
Q ss_pred eEEEEEeCCCCCCCChhhHHHHHc
Q 025391 139 YMIVVFTGGDELEDNDETLEDYLG 162 (253)
Q Consensus 139 ~~ivv~~k~D~~~~~~~~~~~~~~ 162 (253)
..+|++||+|.+.=....++.+..
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eIk~ 340 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEIKN 340 (603)
T ss_pred eEEEEeecccccCccHHHHHHHHH
Confidence 799999999999543445555444
No 336
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.65 E-value=2.9e-07 Score=77.23 Aligned_cols=126 Identities=17% Similarity=0.193 Sum_probs=70.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCC------CccccCCCC--c---------cceeeeeeee-------E--------
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRR------AFKSRASSS--G---------VTSTCEMQRT-------V-------- 64 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~------~~~~~~~~~--~---------~t~~~~~~~~-------~-------- 64 (253)
.+...|+++|++|+||||++..|+... +.....+.. + .......... .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 345789999999999999988876422 100011110 0 0000000000 0
Q ss_pred -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh----cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCe
Q 025391 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139 (253)
Q Consensus 65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~ 139 (253)
...+.++++|||||.... +.....++....... ...+|..++|++++. ..........+.+.+ ..
T Consensus 150 ~~~~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~-----~~ 219 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV-----GL 219 (272)
T ss_pred HHHCCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC-----CC
Confidence 013568999999998653 333344555444322 245799999999873 333323333333332 25
Q ss_pred EEEEEeCCCCCCC
Q 025391 140 MIVVFTGGDELED 152 (253)
Q Consensus 140 ~ivv~~k~D~~~~ 152 (253)
.-+|+||.|....
T Consensus 220 ~g~IlTKlDe~~~ 232 (272)
T TIGR00064 220 TGIILTKLDGTAK 232 (272)
T ss_pred CEEEEEccCCCCC
Confidence 7899999999753
No 337
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=1.2e-07 Score=88.89 Aligned_cols=44 Identities=5% Similarity=0.046 Sum_probs=32.7
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 102 DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 102 ~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..| -+|++++|+++++.....++..+...++ .++|++||...+.
T Consensus 166 ~~P-~lLLLDEPtn~LD~~~~~~L~~~L~~~~-----~tviivsHd~~~l 209 (638)
T PRK10636 166 CRS-DLLLLDEPTNHLDLDAVIWLEKWLKSYQ-----GTLILISHDRDFL 209 (638)
T ss_pred cCC-CEEEEcCCCCcCCHHHHHHHHHHHHhCC-----CeEEEEeCCHHHH
Confidence 444 4778899999999999777766655443 4899999987654
No 338
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.65 E-value=9.1e-08 Score=84.89 Aligned_cols=60 Identities=7% Similarity=0.113 Sum_probs=46.0
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHcccC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGREC 165 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~ 165 (253)
..+..| -+|++++++.+++.....+++.....+.. +++||++|...+. +..+.+++....
T Consensus 235 ~Lf~kP-~LLLLDEPtnhLDleA~~wLee~L~k~d~----~~lVi~sh~QDfl--n~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 235 ALFQKP-DLLLLDEPTNHLDLEAIVWLEEYLAKYDR----IILVIVSHSQDFL--NGVCTNIIHLDN 294 (614)
T ss_pred HHhcCC-CEEEecCCccCCCHHHHHHHHHHHHhccC----ceEEEEecchhhh--hhHhhhhheecc
Confidence 334556 46677889989999999988877776543 3899999999988 888888887533
No 339
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.64 E-value=1.5e-07 Score=81.36 Aligned_cols=90 Identities=16% Similarity=0.062 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC----------------eEEEEEeCCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS 83 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtpG~~~~~ 83 (253)
++++|||.+++|||||+|+|++........ ....|.......+...+. ..+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~-ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAAN-PPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCC-CCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 689999999999999999999986511111 122233333333332221 268899999998654
Q ss_pred CCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 025391 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (253)
+.+......+...++.+ |+++.|++..
T Consensus 82 s~g~Glgn~fL~~ir~~----d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREV----DIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhC----CEEEEEEeCC
Confidence 44444445555555544 8999999874
No 340
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.64 E-value=2.1e-07 Score=72.82 Aligned_cols=123 Identities=18% Similarity=0.154 Sum_probs=62.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCC------CCCcHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF------SAGSEFVGK 91 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~------~~~~~~~~~ 91 (253)
+.-.++|+|+||+|||||++.|+|...+..+....... .............-..+..-|.++.. -++++ +
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~-~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~---~ 102 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGA-DISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQ---R 102 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE-EcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHH---H
Confidence 34689999999999999999999986544332110000 00000000000111122223333221 11112 1
Q ss_pred HHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccCeEEEEEeCCC
Q 025391 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l-~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
+-..........| -++++++++..++...+..+ +.+... ... ..++++++|..
T Consensus 103 qrv~la~al~~~p-~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~--~~tii~~sh~~ 156 (173)
T cd03246 103 QRLGLARALYGNP-RILVLDEPNSHLDVEGERALNQAIAAL-KAA--GATRIVIAHRP 156 (173)
T ss_pred HHHHHHHHHhcCC-CEEEEECCccccCHHHHHHHHHHHHHH-HhC--CCEEEEEeCCH
Confidence 1112223333455 57778899889999985555 444443 221 25888899854
No 341
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=3.6e-07 Score=79.25 Aligned_cols=121 Identities=16% Similarity=0.243 Sum_probs=83.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh--CCCCccccCC------------------CCccceeeeeeeeEeeCCeEEEEEeC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSIL--GRRAFKSRAS------------------SSGVTSTCEMQRTVLKDGQVVNVIDT 76 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~--g~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDt 76 (253)
...++.+||-++.||||||-..|+ |..+-..+.. ..|++..+..-..++ ++..++++||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDT 88 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDT 88 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCC
Confidence 345789999999999999987654 2221111110 124455555455554 7899999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCh
Q 025391 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 154 (253)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~ 154 (253)
||+.|++-+.. + .+..+|+.++|+|+...+.+....+++.++-. + .|++-.+||.|.-..++
T Consensus 89 PGHeDFSEDTY---R--------tLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR-~----iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 89 PGHEDFSEDTY---R--------TLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR-D----IPIFTFINKLDREGRDP 150 (528)
T ss_pred CCccccchhHH---H--------HHHhhheeeEEEecccCccHHHHHHHHHHhhc-C----CceEEEeeccccccCCh
Confidence 99998874322 1 22345899999999879999998888766542 3 48999999999986444
No 342
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.64 E-value=2e-07 Score=74.00 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~ 49 (253)
..-.++||||+|+|||||+++|.+...+..+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~ 58 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS 58 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCCCce
Confidence 34689999999999999999999987766653
No 343
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.64 E-value=1.4e-07 Score=78.84 Aligned_cols=126 Identities=18% Similarity=0.173 Sum_probs=81.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+.+.|.+||.+++|||||++.|++....+.. .-..|.+........+.|..+.+.||-||.+.-. -.+..++
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~d--rLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP------~~LvaAF 248 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPND--RLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLP------IQLVAAF 248 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccc--hhheeccchhhhccCCCCcEEEEeechhhhhhCc------HHHHHHH
Confidence 3479999999999999999999977654433 2234444444445556788999999999974221 3333333
Q ss_pred Hhhc---CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccCeEEEEEeCCCCCC
Q 025391 98 GMAK---DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK---IFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~---~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~---~~~~~ivv~~k~D~~~ 151 (253)
...+ ..+|.+|-|.|++++.-...+..+....+.+|-+ -...++=|=||+|.-.
T Consensus 249 ~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 249 QATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 3332 3568999999998555555544444444444532 1234556677877764
No 344
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.3e-07 Score=76.56 Aligned_cols=127 Identities=18% Similarity=0.229 Sum_probs=85.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcc--------------ccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (253)
+-.+|+.||+...|||||-.+|++.-.-. ......++|.......+.. .++.+..+|+||.-|
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD-- 87 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD-- 87 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH--
Confidence 34799999999999999999987542200 0011235555544444443 577899999999853
Q ss_pred CCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHc
Q 025391 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~ 162 (253)
.+.+++.-+ ...|+.|+|+++++..-++.+..+-..+. .|-+ .+++++||+|+.+ +..+-+.++
T Consensus 88 --------YvKNMItgA-aqmDgAILVVsA~dGpmPqTrEHiLlarq-vGvp---~ivvflnK~Dmvd--d~ellelVe 151 (394)
T COG0050 88 --------YVKNMITGA-AQMDGAILVVAATDGPMPQTREHILLARQ-VGVP---YIVVFLNKVDMVD--DEELLELVE 151 (394)
T ss_pred --------HHHHHhhhH-HhcCccEEEEEcCCCCCCcchhhhhhhhh-cCCc---EEEEEEecccccC--cHHHHHHHH
Confidence 334444333 35589999999988888888777644443 4543 6889999999997 554444443
No 345
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.63 E-value=6.4e-07 Score=71.47 Aligned_cols=123 Identities=17% Similarity=0.069 Sum_probs=62.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC--CccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHH------
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR--AFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFV------ 89 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~------ 89 (253)
+.-.++|+|+||+|||||++.|+|.. .+..+. +...............-..+.+.|.++....-.+.+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~----i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~ 109 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGE----VLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL 109 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceE----EEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh
Confidence 44689999999999999999999985 433321 111000000000011111223334333211100100
Q ss_pred -----H-HHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccCeEEEEEeCCC
Q 025391 90 -----G-KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 90 -----~-~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l-~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
. ++...........| -+++++++++.++...+..+ +.+.+.... ..++|+++|.-
T Consensus 110 ~~LS~G~~qrv~laral~~~p-~illlDEP~~~LD~~~~~~l~~~l~~~~~~---~~tiii~sh~~ 171 (194)
T cd03213 110 RGLSGGERKRVSIALELVSNP-SLLFLDEPTSGLDSSSALQVMSLLRRLADT---GRTIICSIHQP 171 (194)
T ss_pred ccCCHHHHHHHHHHHHHHcCC-CEEEEeCCCcCCCHHHHHHHHHHHHHHHhC---CCEEEEEecCc
Confidence 0 11111122223444 57788899889999885555 444443211 25899999963
No 346
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.63 E-value=2.6e-07 Score=71.49 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+..-+++|+|++|+|||||+|.|+|-..+..+
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G 54 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASG 54 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence 34469999999999999999999998776555
No 347
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2.7e-07 Score=71.30 Aligned_cols=120 Identities=20% Similarity=0.110 Sum_probs=76.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+.++++++|..|.||||+.++.+-...-.....+.+........... .+..++.+|||.|..-..+-..
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn-~g~irf~~wdtagqEk~gglrd--------- 77 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTN-RGQIRFNVWDTAGQEKKGGLRD--------- 77 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecc-cCcEEEEeeecccceeeccccc---------
Confidence 457899999999999999999877655433333333333333222111 1236899999999864432111
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
-++-+..+.|+++|++++++-.. ..+.+.+.+..+. .|++++.||.|.-.
T Consensus 78 --gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 78 --GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKA 128 (216)
T ss_pred --ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceeccc
Confidence 11122347888899988888766 3344455555443 48999999999865
No 348
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.62 E-value=8.9e-08 Score=82.21 Aligned_cols=62 Identities=26% Similarity=0.362 Sum_probs=45.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (253)
...++++||-+++|||||||+|+|......+..+ |.|........ ...+.++||||+.-...
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P-G~Tk~~q~i~~----~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP-GTTKGIQWIKL----DDGIYLLDTPGIIPPKF 192 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC-ceecceEEEEc----CCCeEEecCCCcCCCCc
Confidence 3478999999999999999999999885555444 44444333322 33489999999986554
No 349
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=2.4e-07 Score=72.38 Aligned_cols=123 Identities=19% Similarity=0.151 Sum_probs=63.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCC------CCCcHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF------SAGSEFVGK 91 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~------~~~~~~~~~ 91 (253)
+.-.++|+|+||+|||||++.|+|...+..+....... .............-..+...|.++.. -++++. +
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~-~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~--~ 103 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGV-DLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR--Q 103 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCE-EhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHH--H
Confidence 34689999999999999999999986544332110000 00000000000011122333333321 011111 1
Q ss_pred HHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccCeEEEEEeCCCC
Q 025391 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l-~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
+ ..........| -++++++++..++......+ +.+.+. ... .++++++|...
T Consensus 104 r-l~la~al~~~p-~llllDEP~~gLD~~~~~~l~~~l~~~-~~~---~tii~~sh~~~ 156 (171)
T cd03228 104 R-IAIARALLRDP-PILILDEATSALDPETEALILEALRAL-AKG---KTVIVIAHRLS 156 (171)
T ss_pred H-HHHHHHHhcCC-CEEEEECCCcCCCHHHHHHHHHHHHHh-cCC---CEEEEEecCHH
Confidence 1 11222333444 57788889889999885544 444443 222 58888888654
No 350
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.61 E-value=5.5e-07 Score=74.19 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||+++|+|.-.+..+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G 57 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSG 57 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 368999999999999999999997655444
No 351
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.60 E-value=3.8e-07 Score=72.03 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPASG 55 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998654443
No 352
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.60 E-value=1.7e-07 Score=87.71 Aligned_cols=123 Identities=21% Similarity=0.232 Sum_probs=66.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccC-CCCccceee------------------eeee----------eEeeCCe
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA-SSSGVTSTC------------------EMQR----------TVLKDGQ 69 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~-~~~~~t~~~------------------~~~~----------~~~~~~~ 69 (253)
...|+|||+||+||||++..|++......+. ...-++.+. .... +....+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4689999999999999999998764211110 000000000 0000 0012345
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
+++||||||..... .....++..... ...|+-.++|++++.. ..+ ..+++.+....+. ...-+|+||.|
T Consensus 265 D~VLIDTAGRs~~d---~~l~eel~~l~~--~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~---~i~glIlTKLD 334 (767)
T PRK14723 265 HLVLIDTVGMSQRD---RNVSEQIAMLCG--VGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGE---DVDGCIITKLD 334 (767)
T ss_pred CEEEEeCCCCCccC---HHHHHHHHHHhc--cCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccC---CCCEEEEeccC
Confidence 79999999976432 223333333222 2456778899888732 112 2233333322111 24678899999
Q ss_pred CCC
Q 025391 149 ELE 151 (253)
Q Consensus 149 ~~~ 151 (253)
...
T Consensus 335 Et~ 337 (767)
T PRK14723 335 EAT 337 (767)
T ss_pred CCC
Confidence 974
No 353
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.60 E-value=2.1e-07 Score=80.93 Aligned_cols=134 Identities=19% Similarity=0.193 Sum_probs=70.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccC-CCCccceee------------------eeeee----------EeeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA-SSSGVTSTC------------------EMQRT----------VLKDG 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~-~~~~~t~~~------------------~~~~~----------~~~~~ 68 (253)
....++|+|++|+||||++..|++......+. ...-++... ..... ....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34689999999999999999997643211110 000000000 00000 11245
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc---cCeEEEEEe
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI---FDYMIVVFT 145 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~---~~~~ivv~~ 145 (253)
.++++|||||..... ......+. .+... ..+.-.++|++++....... ..+..+....+.+. ....-+|+|
T Consensus 216 ~DlVLIDTaG~~~~d---~~l~e~La-~L~~~-~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~I~T 289 (374)
T PRK14722 216 KHMVLIDTIGMSQRD---RTVSDQIA-MLHGA-DTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGCILT 289 (374)
T ss_pred CCEEEEcCCCCCccc---HHHHHHHH-HHhcc-CCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEEEEe
Confidence 689999999986422 22222222 23222 34456788888875444333 33444444322211 124578899
Q ss_pred CCCCCCCChhhH
Q 025391 146 GGDELEDNDETL 157 (253)
Q Consensus 146 k~D~~~~~~~~~ 157 (253)
|.|....-+..+
T Consensus 290 KlDEt~~~G~~l 301 (374)
T PRK14722 290 KLDEASNLGGVL 301 (374)
T ss_pred ccccCCCccHHH
Confidence 999986333333
No 354
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.60 E-value=1e-07 Score=84.11 Aligned_cols=123 Identities=19% Similarity=0.206 Sum_probs=66.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC-----------------------ccceeeeeee------eEeeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----------------------GVTSTCEMQR------TVLKDG 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~-----------------------~~t~~~~~~~------~~~~~~ 68 (253)
...+|+|||+||+||||+++.|++......+.... +......... .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 45799999999999999999888752111110000 0000000000 001234
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
..+++|||+|..... .....++... .. ...++-.++|++++.... + +..+...|.. ....-+|+||.|
T Consensus 270 ~d~VLIDTaGrsqrd---~~~~~~l~~l-~~-~~~~~~~~LVl~at~~~~--~---~~~~~~~f~~--~~~~~~I~TKlD 337 (420)
T PRK14721 270 KHMVLIDTVGMSQRD---QMLAEQIAML-SQ-CGTQVKHLLLLNATSSGD--T---LDEVISAYQG--HGIHGCIITKVD 337 (420)
T ss_pred CCEEEecCCCCCcch---HHHHHHHHHH-hc-cCCCceEEEEEcCCCCHH--H---HHHHHHHhcC--CCCCEEEEEeee
Confidence 578999999986432 2233333332 22 134567788888773222 2 2222233322 235778999999
Q ss_pred CCCC
Q 025391 149 ELED 152 (253)
Q Consensus 149 ~~~~ 152 (253)
....
T Consensus 338 Et~~ 341 (420)
T PRK14721 338 EAAS 341 (420)
T ss_pred CCCC
Confidence 9853
No 355
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=3.6e-07 Score=69.14 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
-+++++|--+||||||++.|-.... . ..-+|.+....... ..+..++.+|..|. ..-++....
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl--~---qhvPTlHPTSE~l~-Ig~m~ftt~DLGGH-----------~qArr~wkd 83 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRL--G---QHVPTLHPTSEELS-IGGMTFTTFDLGGH-----------LQARRVWKD 83 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccc--c---ccCCCcCCChHHhe-ecCceEEEEccccH-----------HHHHHHHHH
Confidence 5899999999999999999854432 1 11122222222233 37788999999887 344466678
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
|++.+|++++++|+-+.-...+ +..+..+... -.-.+.|++|+.||+|...
T Consensus 84 yf~~v~~iv~lvda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 84 YFPQVDAIVYLVDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHhhhceeEeeeehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCCC
Confidence 8888899999998853322222 2222222211 0114568999999999975
No 356
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.59 E-value=1.5e-07 Score=72.35 Aligned_cols=57 Identities=30% Similarity=0.419 Sum_probs=38.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (253)
...+++++|.+|+||||++|.+.+......+. ..+.|....... .+..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSP-SPGYTKGEQLVK----ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeeeeeEEEE----cCCCEEEEECcCC
Confidence 45789999999999999999999876433332 223333322211 2346899999995
No 357
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.59 E-value=1.4e-07 Score=82.41 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCcc----ccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFK----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
.+|++||.+|+|||||+|+|++..... ......+.|..... +. -+..+.++||||+.....-...+.. .
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~--~~--~~~~~~l~DtPG~~~~~~~~~~l~~---~ 227 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE--IP--LDDGHSLYDTPGIINSHQMAHYLDK---K 227 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE--EE--eCCCCEEEECCCCCChhHhhhhcCH---H
Confidence 589999999999999999999864311 11122233443322 22 1334679999999753210000000 1
Q ss_pred HHHhhc--CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAK--DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+.... ...+...+.++....+.......+.++.. . ...+.+.+++.+.+.
T Consensus 228 ~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~--~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 228 DLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---E--KTSFTFYVSNELNIH 280 (360)
T ss_pred HHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecC---C--ceEEEEEccCCceeE
Confidence 111111 34567777777654444344333332221 1 123556666666654
No 358
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=4.9e-07 Score=76.22 Aligned_cols=117 Identities=16% Similarity=0.287 Sum_probs=72.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCC---cccc--CCCCccceeeeeeeeEee--------CCeEEEEEeCCCCCCCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRA---FKSR--ASSSGVTSTCEMQRTVLK--------DGQVVNVIDTPGLFDFSAG 85 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~---~~~~--~~~~~~t~~~~~~~~~~~--------~~~~~~liDtpG~~~~~~~ 85 (253)
.++++++|+-.+|||||.++|....- |... ....++|.+..+...... ....++++|+||..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa----- 81 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA----- 81 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH-----
Confidence 38999999999999999999864321 1111 112344544444333222 23466999999983
Q ss_pred cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+.+.+-....-.|..++|+|+........-+.+- .|....+..+||+||.|.+.
T Consensus 82 ------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLi-----ig~~~c~klvvvinkid~lp 136 (522)
T KOG0461|consen 82 ------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLI-----IGELLCKKLVVVINKIDVLP 136 (522)
T ss_pred ------HHHHHHHhhhheeeeeeEEEehhcccccccchhhh-----hhhhhccceEEEEecccccc
Confidence 23333333334558899999997555544433331 23333457899999999996
No 359
>PRK14974 cell division protein FtsY; Provisional
Probab=98.58 E-value=2.7e-07 Score=79.32 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=44.8
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCC
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~ 147 (253)
+.++++|||||.... ......++....... .||.+++|++++..- ......+.+.+.. ...-+++||.
T Consensus 222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~~--~pd~~iLVl~a~~g~--d~~~~a~~f~~~~-----~~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMHT---DANLMDELKKIVRVT--KPDLVIFVGDALAGN--DAVEQAREFNEAV-----GIDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccCC---cHHHHHHHHHHHHhh--CCceEEEeeccccch--hHHHHHHHHHhcC-----CCCEEEEeee
Confidence 457999999998642 334445555554433 578889999886332 2222233333322 2578999999
Q ss_pred CCCC
Q 025391 148 DELE 151 (253)
Q Consensus 148 D~~~ 151 (253)
|...
T Consensus 290 D~~~ 293 (336)
T PRK14974 290 DADA 293 (336)
T ss_pred cCCC
Confidence 9975
No 360
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.57 E-value=4e-07 Score=71.42 Aligned_cols=24 Identities=38% Similarity=0.320 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
+.-+++|+|+||+|||||++.|++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346999999999999999999974
No 361
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.57 E-value=1.4e-07 Score=75.28 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=75.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|.|+|.+|+||||+=-.+.... ..-.....+.|....-....+.++.-+.+||+.|... .+...++..-.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny-~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~------fmen~~~~q~d 76 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANY-IARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE------FMENYLSSQED 76 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhh-hhhhhhccCCcceeeehhhhhhhhheeehhccCCcHH------HHHHHHhhcch
Confidence 4789999999999998544433211 1111223445555555555555667889999988631 11122222223
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH----HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE----EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~----~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+...+++|+|+|+.++--..+ ...++.+.+.- +...+++++.|.|.+.
T Consensus 77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S---P~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS---PEAKIFCLLHKMDLVQ 130 (295)
T ss_pred hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC---CcceEEEEEeechhcc
Confidence 45677899999999975422223 34445555442 3347899999999986
No 362
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.56 E-value=4e-07 Score=71.57 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=61.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC-ccceeeeeeeeEeeCCeEEEEEeCCCCCC---------CCCCcH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD---------FSAGSE 87 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~---------~~~~~~ 87 (253)
+.-.++|+|+||+|||||++.|+|...+..+.... +..... . ... ....-..+.+.|.++. .-++++
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~-~-~~~-~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSD-L-EKA-LSSLISVLNQRPYLFDTTLRNNLGRRFSGGE 103 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHH-H-HHH-HHhhEEEEccCCeeecccHHHhhcccCCHHH
Confidence 34689999999999999999999986544332110 000000 0 000 0000011112222211 111222
Q ss_pred HHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccCeEEEEEeCCCC
Q 025391 88 FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l-~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
. +...........| -+++++++++.++......+ +.+.+. .. ..++++++|.-.
T Consensus 104 ~---qrv~laral~~~p-~~lllDEP~~~LD~~~~~~l~~~l~~~-~~---~~tii~~sh~~~ 158 (178)
T cd03247 104 R---QRLALARILLQDA-PIVLLDEPTVGLDPITERQLLSLIFEV-LK---DKTLIWITHHLT 158 (178)
T ss_pred H---HHHHHHHHHhcCC-CEEEEECCcccCCHHHHHHHHHHHHHH-cC---CCEEEEEecCHH
Confidence 1 1112222333444 67778889889999885544 444443 22 258888888543
No 363
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.56 E-value=7.2e-07 Score=75.73 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||||||||++.|+|...+..+
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~p~~G 60 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 358999999999999999999998765443
No 364
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.56 E-value=7.1e-07 Score=73.21 Aligned_cols=29 Identities=34% Similarity=0.410 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
--++|+||||+|||||+++|+|.-.+..+
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G 59 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSG 59 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 58999999999999999999996554444
No 365
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.55 E-value=6.4e-07 Score=71.82 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+.-.++|+|+||+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4469999999999999999999997
No 366
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=3.7e-07 Score=78.11 Aligned_cols=89 Identities=19% Similarity=0.158 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-----------------eCCeEEEEEeCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------KDGQVVNVIDTPGLFDF 82 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtpG~~~~ 82 (253)
+++||||.+++|||||+|+|+....... ....+|...+...+.. .-...+.++|.+|+...
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~a--NYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIA--NYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCcccc--CCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 7899999999999999999998763111 1122233222221110 01125789999999877
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 025391 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (253)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (253)
.+.++.+..++..-++ .+|+++.|++..
T Consensus 81 As~GeGLGNkFL~~IR----evdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIR----EVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhh----hcCeEEEEEEec
Confidence 7666666666665555 448999999864
No 367
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.1e-06 Score=76.58 Aligned_cols=90 Identities=16% Similarity=0.267 Sum_probs=62.5
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHcccCCchhhhhHHHhhhHHHHHHH
Q 025391 106 AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDS 185 (253)
Q Consensus 106 ~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 185 (253)
.+|++..++++++....-|+. .++ ..|+.++++++|+..+. +..+.+++..+..+ +.-
T Consensus 432 TLLMLDEPTNHLDLNAVIWLd---NYL--QgWkKTLLIVSHDQgFL--D~VCtdIIHLD~qk---------------Lhy 489 (807)
T KOG0066|consen 432 TLLMLDEPTNHLDLNAVIWLD---NYL--QGWKKTLLIVSHDQGFL--DSVCTDIIHLDNQK---------------LHY 489 (807)
T ss_pred eeeeecCCccccccceeeehh---hHH--hhhhheeEEEecccchH--HHHHHHHhhhhhhh---------------hhh
Confidence 567777888888866644443 332 23678999999999998 88999999864443 444
Q ss_pred cCC-CCH--HHHHHHHHHHHHhHHHHHHHHHHHhc
Q 025391 186 LKG-YSK--REISELKEQMHKSYEDQLKRITEMCA 217 (253)
Q Consensus 186 ~~g-y~~--~~~~~~~~~~~~~~~~~~~~~~~~~e 217 (253)
+.| |+. .+|....+.+.+.|+++.++.+++-.
T Consensus 490 YrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa 524 (807)
T KOG0066|consen 490 YRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKA 524 (807)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556 664 46666667777777777766666554
No 368
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=8.3e-07 Score=68.27 Aligned_cols=112 Identities=15% Similarity=0.130 Sum_probs=58.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee----CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK----DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
.-.++|+|+||+|||||++.|.|...+..+ .++.... ..... ....+.++. . -++++...-.+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G----~i~~~~~--~~~~~~~~~~~~~i~~~~--q----lS~G~~~r~~l~ 92 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSG----EILIDGK--DIAKLPLEELRRRIGYVP--Q----LSGGQRQRVALA 92 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCcc----EEEECCE--EcccCCHHHHHhceEEEe--e----CCHHHHHHHHHH
Confidence 368999999999999999999997543222 1111110 00000 001122221 1 122232112222
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
.+ ....| -++++++++..++......+..+...+... ..++++++|.-
T Consensus 93 ~~---l~~~~-~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~--~~tii~~sh~~ 140 (157)
T cd00267 93 RA---LLLNP-DLLLLDEPTSGLDPASRERLLELLRELAEE--GRTVIIVTHDP 140 (157)
T ss_pred HH---HhcCC-CEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 22 22233 677788998899988855553333332221 24888888853
No 369
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.52 E-value=3.4e-07 Score=74.04 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=66.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC-ccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
-||+++|-+.+|||||+-.|++..- ..... ..|..|....+. +++-.+.++|.||+....+.+....++ +-
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~S---eaA~yeFTTLtcIpGvi~-y~ga~IQllDLPGIieGAsqgkGRGRQ----vi 134 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHS---EAASYEFTTLTCIPGVIH-YNGANIQLLDLPGIIEGASQGKGRGRQ----VI 134 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchh---hhhceeeeEEEeecceEE-ecCceEEEecCcccccccccCCCCCce----EE
Confidence 7999999999999999999987642 22223 345555545444 589999999999998654333211121 12
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG 133 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g 133 (253)
....-+|.+|+|+|++. +...+..++.-.+..|
T Consensus 135 avArtaDlilMvLDatk--~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 135 AVARTADLILMVLDATK--SEDQREILEKELEAVG 167 (364)
T ss_pred EEeecccEEEEEecCCc--chhHHHHHHHHHHHhc
Confidence 33356799999999872 2233445444333334
No 370
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=2.4e-07 Score=70.56 Aligned_cols=119 Identities=13% Similarity=0.024 Sum_probs=74.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcc-cc--CCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFK-SR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~-~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
...|+|+|.-+||||||+-.+-....-. .+ ++....|..-+...++. .+..+.+||.-|. ..++.
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQ-----------e~lrS 84 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQ-----------ESLRS 84 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCCh-----------HHHHH
Confidence 3689999999999999997753221100 11 12233455555565664 5788999999886 44556
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...-++.-+|++|+++|++++-...+ ..+-+.+..-.- -..|++++.||-|.-.
T Consensus 85 lw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~l--eg~p~L~lankqd~q~ 140 (197)
T KOG0076|consen 85 LWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKL--EGAPVLVLANKQDLQN 140 (197)
T ss_pred HHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHh--cCCchhhhcchhhhhh
Confidence 66667778899999999985322222 111111111111 1248999999999864
No 371
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=1.9e-06 Score=68.58 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
+.-.++|+|+||+|||||++.|+|..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999964
No 372
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.3e-06 Score=76.20 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=68.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe---------------------------------
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------------------- 65 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------------------- 65 (253)
.-||+|||+||+|||||+..|+|..-+..+......+..........
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG 692 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG 692 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence 46999999999999999999999876555443333222222211100
Q ss_pred --eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccCeEEE
Q 025391 66 --KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIV 142 (253)
Q Consensus 66 --~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l-~~l~~~~g~~~~~~~iv 142 (253)
..-..+.+-|..|-. ..-..+...++.+||++| +..+++.++-+....+ +.|.++- ..+|
T Consensus 693 L~sHAHTikikdLSGGQ----------KaRValaeLal~~PDvlI-LDEPTNNLDIESIDALaEAIney~------GgVi 755 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQ----------KARVALAELALGGPDVLI-LDEPTNNLDIESIDALAEAINEYN------GGVI 755 (807)
T ss_pred hhhccceEeeeecCCcc----------hHHHHHHHHhcCCCCEEE-ecCCCCCcchhhHHHHHHHHHhcc------CcEE
Confidence 001123333333211 111233456678887765 4677778888775555 4444432 4788
Q ss_pred EEeCCCCCC
Q 025391 143 VFTGGDELE 151 (253)
Q Consensus 143 v~~k~D~~~ 151 (253)
+++|+..+-
T Consensus 756 ~VsHDeRLi 764 (807)
T KOG0066|consen 756 MVSHDERLI 764 (807)
T ss_pred EEeccccee
Confidence 899988773
No 373
>PTZ00099 rab6; Provisional
Probab=98.48 E-value=1.7e-06 Score=67.95 Aligned_cols=71 Identities=20% Similarity=0.110 Sum_probs=49.0
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeC
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTG 146 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k 146 (253)
...+.+|||||... +......++.++|++|+|+|++++.+... ..++..+....+. ..|++||.||
T Consensus 28 ~v~l~iwDt~G~e~-----------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~--~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQER-----------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--DVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChHH-----------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEEC
Confidence 45788999999843 33445566789999999999986544444 3344444443332 3578999999
Q ss_pred CCCCC
Q 025391 147 GDELE 151 (253)
Q Consensus 147 ~D~~~ 151 (253)
.|+..
T Consensus 95 ~DL~~ 99 (176)
T PTZ00099 95 TDLGD 99 (176)
T ss_pred ccccc
Confidence 99853
No 374
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.47 E-value=8.4e-07 Score=77.89 Aligned_cols=123 Identities=18% Similarity=0.215 Sum_probs=66.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc-------CCCC--c---------cceeeeeeee---------EeeCCeEE
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-------ASSS--G---------VTSTCEMQRT---------VLKDGQVV 71 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-------~~~~--~---------~t~~~~~~~~---------~~~~~~~~ 71 (253)
...|+++|++|+||||++..|+.......+ .++. + .......... ....+.++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 457999999999999999888753210000 0000 0 0000000000 00135588
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHHhhc-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
+||||||..... .....++...+.... +.++-.+||++++...... ... .+.|. .....-+|+||.|..
T Consensus 303 VLIDTaGr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~----~~~f~--~~~~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTV----LKAYE--SLNYRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHH----HHHhc--CCCCCEEEEEcccCC
Confidence 999999986432 233345555554332 2356788888887333211 222 22332 123678999999997
Q ss_pred C
Q 025391 151 E 151 (253)
Q Consensus 151 ~ 151 (253)
.
T Consensus 373 ~ 373 (432)
T PRK12724 373 D 373 (432)
T ss_pred C
Confidence 5
No 375
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.47 E-value=2.3e-06 Score=67.44 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~ 47 (253)
+.-.++|+|+||+|||||++.|+|...+..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~ 53 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSS 53 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 446899999999999999999999865433
No 376
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.47 E-value=3.8e-07 Score=74.75 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=28.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~ 49 (253)
++.-+++++|+|||||||+++.|+|...+.++.
T Consensus 48 P~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~ 80 (325)
T COG4586 48 PKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGK 80 (325)
T ss_pred CCCcEEEEEcCCCCcchhhHHHHhCccccCCCe
Confidence 344799999999999999999999998766653
No 377
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.47 E-value=1.7e-06 Score=69.90 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=31.4
Q ss_pred cEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 105 HAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 105 ~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
..+|+.++||..++... ..++..+.+.-... ..++|++||+..+
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~--g~tii~VTHd~~l 205 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKER--GKTIIMVTHDPEL 205 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhc--CCEEEEEcCCHHH
Confidence 37889999998999887 55556665543221 2499999997765
No 378
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.2e-06 Score=78.88 Aligned_cols=31 Identities=35% Similarity=0.385 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+..+++|||++|+|||||++.|+|...+..+
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G 376 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 4579999999999999999999998765444
No 379
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.45 E-value=3.6e-06 Score=68.94 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|.|-..+..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G 59 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCCCC
Confidence 3468999999999999999999998776654
No 380
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.44 E-value=6.7e-07 Score=83.90 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=31.0
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 105 HAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 105 ~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
.-+|++++++++++......+..+...++ .++|++||...+
T Consensus 459 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-----~tvi~vSHd~~~ 499 (635)
T PRK11147 459 SNLLILDEPTNDLDVETLELLEELLDSYQ-----GTVLLVSHDRQF 499 (635)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhCC-----CeEEEEECCHHH
Confidence 36788899999999998777666655542 489999997544
No 381
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.44 E-value=1.9e-06 Score=70.06 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=26.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
--|.|+|++|+|||||+|.|+|...+..+
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 57999999999999999999999876665
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.44 E-value=7.3e-06 Score=66.31 Aligned_cols=41 Identities=7% Similarity=0.061 Sum_probs=28.0
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 025391 106 AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 106 ~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
.++++++++..+++.....+..+...+... .++|+++|.+.
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~~l~~~~~~---~~~iivs~~~~ 191 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVANYIKERTKN---AQFIVISLRNN 191 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHcCC---CEEEEEECcHH
Confidence 577789999899998866654444434332 57888887643
No 383
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=7.6e-07 Score=83.49 Aligned_cols=31 Identities=32% Similarity=0.334 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
++-+++|+|+||+|||||++.|+|...+..|
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G 367 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSG 367 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4469999999999999999999998765444
No 384
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.43 E-value=3.6e-06 Score=67.49 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPPLAG 55 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4479999999999999999999998654443
No 385
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.43 E-value=5.7e-07 Score=80.00 Aligned_cols=122 Identities=24% Similarity=0.223 Sum_probs=64.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCC-ccccCCCCccceee------------------eeee----------eEeeCCe
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTC------------------EMQR----------TVLKDGQ 69 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~-~~~~~~~~~~t~~~------------------~~~~----------~~~~~~~ 69 (253)
...|+|+|++|+||||++..|+.... ...+....-++.+. .... +....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 35899999999999999888765322 11110000000000 0000 0011345
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 025391 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
+++||||||..... .....++..++... ..+.-.++|++++. ...+ +..+...|..- ...-+|+||.|.
T Consensus 301 DlVlIDt~G~~~~d---~~~~~~L~~ll~~~-~~~~~~~LVl~a~~--~~~~---l~~~~~~f~~~--~~~~vI~TKlDe 369 (424)
T PRK05703 301 DVILIDTAGRSQRD---KRLIEELKALIEFS-GEPIDVYLVLSATT--KYED---LKDIYKHFSRL--PLDGLIFTKLDE 369 (424)
T ss_pred CEEEEeCCCCCCCC---HHHHHHHHHHHhcc-CCCCeEEEEEECCC--CHHH---HHHHHHHhCCC--CCCEEEEecccc
Confidence 89999999985432 22334555555522 23456677777752 2222 22222333321 235689999999
Q ss_pred CC
Q 025391 150 LE 151 (253)
Q Consensus 150 ~~ 151 (253)
..
T Consensus 370 t~ 371 (424)
T PRK05703 370 TS 371 (424)
T ss_pred cc
Confidence 75
No 386
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=1.6e-06 Score=72.42 Aligned_cols=31 Identities=23% Similarity=0.110 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
..-.++|||.+|||||||++.|-+...|.++
T Consensus 31 ~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG 61 (339)
T COG1135 31 KGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61 (339)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCc
Confidence 3458999999999999999999988776665
No 387
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.43 E-value=2.4e-06 Score=69.04 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
++-.++|+|++|+|||||++.|+|...+..+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G 62 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSG 62 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCc
Confidence 4468999999999999999999999876555
No 388
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.43 E-value=1.1e-06 Score=74.06 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=58.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee-------------C---CeEEEEEeCCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-------------D---GQVVNVIDTPGLFD 81 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-------------~---~~~~~liDtpG~~~ 81 (253)
..++|||||.+++|||||+|+|+........ ...+|...+...+... + .-.+++.|.+|+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~N--fPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAAN--FPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccC--CCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 4589999999999999999999987653111 1122333322222111 1 12588999999987
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeC
Q 025391 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSV 113 (253)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~ 113 (253)
..+.++.+...+..-++. +|+++-|+++
T Consensus 97 GAs~G~GLGN~FLs~iR~----vDaifhVVr~ 124 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRH----VDAIFHVVRA 124 (391)
T ss_pred CcccCcCchHHHHHhhhh----ccceeEEEEe
Confidence 766666665655555544 4788877764
No 389
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.42 E-value=5.4e-06 Score=67.14 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 66 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESG 66 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence 3468999999999999999999998654443
No 390
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.42 E-value=4e-06 Score=65.35 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
--+-++|++|||||||++.|++...+..+
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt~G 57 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPTRG 57 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCCCc
Confidence 46788999999999999999998776554
No 391
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.42 E-value=1.3e-06 Score=72.26 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G 54 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEG 54 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence 4568999999999999999999998665444
No 392
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.41 E-value=3.6e-07 Score=79.09 Aligned_cols=123 Identities=18% Similarity=0.101 Sum_probs=67.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC------CccccCCCCcc-----------ceeeeeeeeEe-------------eC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR------AFKSRASSSGV-----------TSTCEMQRTVL-------------KD 67 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~------~~~~~~~~~~~-----------t~~~~~~~~~~-------------~~ 67 (253)
+...|+|+|++|+||||++..|+... +.....++... .....+..... ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 45789999999999999998886432 10011111000 00000110000 02
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCC
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~ 147 (253)
+.+++||||||.... ......++....... .||.+++|++++ ....+ ....+.. |.. ....-+|+||.
T Consensus 285 ~~D~VLIDTAGr~~~---d~~~l~EL~~l~~~~--~p~~~~LVLsag--~~~~d--~~~i~~~-f~~--l~i~glI~TKL 352 (407)
T PRK12726 285 CVDHILIDTVGRNYL---AEESVSEISAYTDVV--HPDLTCFTFSSG--MKSAD--VMTILPK-LAE--IPIDGFIITKM 352 (407)
T ss_pred CCCEEEEECCCCCcc---CHHHHHHHHHHhhcc--CCceEEEECCCc--ccHHH--HHHHHHh-cCc--CCCCEEEEEcc
Confidence 458999999998642 233445555544332 557777787664 23222 3333332 321 23578889999
Q ss_pred CCCCC
Q 025391 148 DELED 152 (253)
Q Consensus 148 D~~~~ 152 (253)
|....
T Consensus 353 DET~~ 357 (407)
T PRK12726 353 DETTR 357 (407)
T ss_pred cCCCC
Confidence 99753
No 393
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.41 E-value=4.6e-07 Score=79.92 Aligned_cols=61 Identities=33% Similarity=0.336 Sum_probs=44.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (253)
..+||+||.+++||||+||+|.|.+..... .+.|.|.+.....+ ...+.+.|+||+.-.+.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~l----s~~v~LCDCPGLVfPSf 374 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFL----SPSVCLCDCPGLVFPSF 374 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEc----CCCceecCCCCccccCC
Confidence 589999999999999999999999874433 23445554443322 34678999999975443
No 394
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.40 E-value=8.9e-07 Score=81.85 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
++-.++|+|+||+|||||++.|+|...+..|
T Consensus 32 ~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G 62 (556)
T PRK11819 32 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFEG 62 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3368999999999999999999998654443
No 395
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.40 E-value=3.2e-06 Score=67.85 Aligned_cols=121 Identities=14% Similarity=0.063 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCc-cccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCC-CCcHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS-AGSEFVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~ 97 (253)
-+++|+|+||+|||||+++|.+.... ..+..... ....... ....+..++........ +.-..-..++...+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~--~~~~i~~----~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~ 103 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA--ESASIPL----VDRIFTRIGAEDSISDGRSTFMAELLELKEIL 103 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc--cccccCC----cCEEEEEecCcccccCCceeHHHHHHHHHHHH
Confidence 68999999999999999999843210 01100000 0000110 11112222221111111 11111123333333
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccCeEEEEEeCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l-~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
..+ .. ..++++++++..+++.....+ ..+.+.+... ..++|++||...+
T Consensus 104 ~~~-~~-~~llllDEp~~gld~~~~~~l~~~ll~~l~~~--~~~vi~~tH~~~~ 153 (202)
T cd03243 104 SLA-TP-RSLVLIDELGRGTSTAEGLAIAYAVLEHLLEK--GCRTLFATHFHEL 153 (202)
T ss_pred Hhc-cC-CeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc--CCeEEEECChHHH
Confidence 332 33 478888899888998765433 3333322211 3588899996554
No 396
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.40 E-value=3e-06 Score=69.42 Aligned_cols=31 Identities=32% Similarity=0.308 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 55 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG 55 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998654443
No 397
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.39 E-value=5.2e-07 Score=74.19 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=33.8
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc-CCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeC
Q 025391 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTG 146 (253)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k 146 (253)
.+.++||||+.+.- ..+..+...+.... ...-++++++|...--++.. ...+-.+.-.+. ...|.+.|+||
T Consensus 92 ~y~l~DtPGQiElf----~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~--~~lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELF----THSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR--LELPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHH----HHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH--HTSEEEEEE--
T ss_pred cEEEEeCCCCEEEE----EechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh--CCCCEEEeeec
Confidence 68999999985321 11122222333222 34457888888873333333 111112222221 12489999999
Q ss_pred CCCCC
Q 025391 147 GDELE 151 (253)
Q Consensus 147 ~D~~~ 151 (253)
+|.+.
T Consensus 166 ~Dl~~ 170 (238)
T PF03029_consen 166 IDLLS 170 (238)
T ss_dssp GGGS-
T ss_pred cCccc
Confidence 99997
No 398
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=2.7e-06 Score=68.73 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.++|+|+||+|||||++.|+|...+..+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 54 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSG 54 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 8999999999999999999998654443
No 399
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=8e-06 Score=66.40 Aligned_cols=31 Identities=35% Similarity=0.318 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 59 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSG 59 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3468999999999999999999998654333
No 400
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=3.7e-06 Score=68.07 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=32.4
Q ss_pred CCCCCCCCCCC---CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 6 IDDDWELTSPS---NGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 6 ~~~~~~~~~~~---~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
..+.|.+...+ ...-+|+|||+||||||||++.|+|...|..+
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G 82 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG 82 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence 34555554322 44569999999999999999999998765554
No 401
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.38 E-value=4.9e-06 Score=70.96 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
.+...|+|+|++|+|||||++.|.+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999765
No 402
>PRK13796 GTPase YqeH; Provisional
Probab=98.38 E-value=4.7e-07 Score=79.15 Aligned_cols=58 Identities=29% Similarity=0.304 Sum_probs=37.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCC-----ccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRA-----FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (253)
..++.+||.+|||||||+|+|++... ...+ ...++|..... +.. +....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s-~~pGTT~~~~~--~~l--~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTS-RFPGTTLDKIE--IPL--DDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEec-CCCCccceeEE--EEc--CCCcEEEECCCccc
Confidence 35899999999999999999986531 1111 12234443322 222 22357999999963
No 403
>PLN03073 ABC transporter F family; Provisional
Probab=98.38 E-value=8.8e-07 Score=83.80 Aligned_cols=44 Identities=9% Similarity=0.022 Sum_probs=32.0
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 102 DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 102 ~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..| -+|+++++++.++.....++..+...++ .++|+++|...+.
T Consensus 361 ~~p-~lLlLDEPt~~LD~~~~~~l~~~L~~~~-----~tviivsHd~~~l 404 (718)
T PLN03073 361 IEP-DLLLLDEPTNHLDLHAVLWLETYLLKWP-----KTFIVVSHAREFL 404 (718)
T ss_pred cCC-CEEEEECCCCCCCHHHHHHHHHHHHHcC-----CEEEEEECCHHHH
Confidence 344 5778889999999999776655555443 4899999976553
No 404
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.37 E-value=1.8e-06 Score=72.91 Aligned_cols=127 Identities=20% Similarity=0.205 Sum_probs=71.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc------CCC---------------Cccceee-ee----e-------ee
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASS---------------SGVTSTC-EM----Q-------RT 63 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~------~~~---------------~~~t~~~-~~----~-------~~ 63 (253)
+.+..|++||-||+||||.+-.|+....-... .++ .++..-. .. . ..
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 44689999999999999999887543210000 000 0000000 00 0 00
Q ss_pred EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh-cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEE
Q 025391 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142 (253)
Q Consensus 64 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~iv 142 (253)
....+.+++++||+|-......--.-.+.+.+.+... ...||-+++++|++..-+.. .-.+.+.+..+ -.-+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal--~QAk~F~eav~-----l~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL--SQAKIFNEAVG-----LDGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH--HHHHHHHHhcC-----CceE
Confidence 0124568999999998754433222234444444333 34578899999987444432 23344555543 4778
Q ss_pred EEeCCCCC
Q 025391 143 VFTGGDEL 150 (253)
Q Consensus 143 v~~k~D~~ 150 (253)
++||.|--
T Consensus 290 IlTKlDgt 297 (340)
T COG0552 290 ILTKLDGT 297 (340)
T ss_pred EEEecccC
Confidence 99999954
No 405
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.36 E-value=1.3e-06 Score=69.16 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 27 Gev~ailGPNGAGKSTlLk~LsGel~p~~G 56 (259)
T COG4559 27 GEVLAILGPNGAGKSTLLKALSGELSPDSG 56 (259)
T ss_pred CcEEEEECCCCccHHHHHHHhhCccCCCCC
Confidence 367899999999999999999999765554
No 406
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.36 E-value=1.3e-06 Score=80.68 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..|
T Consensus 30 ~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G 60 (552)
T TIGR03719 30 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFNG 60 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4468999999999999999999998654443
No 407
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.36 E-value=1.4e-05 Score=64.04 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh--------CCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCc-HHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSIL--------GRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-EFVG 90 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~--------g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~ 90 (253)
.+++|+|+||+|||||++.|. |..++... ... ... ....+..++.+.......+. ..-.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~----~~~----~~~----~~~~~~~lg~~~~l~~~~s~fs~g~ 96 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE----GSS----LPV----FENIFADIGDEQSIEQSLSTFSSHM 96 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc----ccc----CcC----ccEEEEecCchhhhhcCcchHHHHH
Confidence 569999999999999999987 43332111 000 000 11122233332211111111 1111
Q ss_pred HHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHH-HH-HHHHhcccccCeEEEEEeCCC
Q 025391 91 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HS-LQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l-~~-l~~~~g~~~~~~~ivv~~k~D 148 (253)
+++...+.. ..+| -++++++++..++......+ .. +...... ..+++++||..
T Consensus 97 ~~~~~i~~~-~~~p-~llllDEp~~glD~~~~~~i~~~~l~~l~~~---~~~vi~~tH~~ 151 (200)
T cd03280 97 KNIARILQH-ADPD-SLVLLDELGSGTDPVEGAALAIAILEELLER---GALVIATTHYG 151 (200)
T ss_pred HHHHHHHHh-CCCC-cEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc---CCEEEEECCHH
Confidence 223333322 3444 57888899889998885544 22 3332211 25889999964
No 408
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.36 E-value=9.3e-07 Score=78.63 Aligned_cols=35 Identities=29% Similarity=0.247 Sum_probs=29.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS 50 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~ 50 (253)
-...-||++|||||+|||||++.++|...+..|..
T Consensus 413 id~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~v 447 (614)
T KOG0927|consen 413 IDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMV 447 (614)
T ss_pred cCcccceeEecCCCCchhhhHHHHhhccccccccc
Confidence 34557999999999999999999999987666643
No 409
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.35 E-value=2.1e-06 Score=78.86 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
++-+++|+|++|+|||||++.|+|...+..|
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G 390 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQG 390 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 5578999999999999999999998665444
No 410
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.35 E-value=2.6e-06 Score=72.88 Aligned_cols=30 Identities=37% Similarity=0.376 Sum_probs=26.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~ 49 (253)
--++|+||||||||||++.|+|-..+.++.
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~~~~G~ 59 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 468999999999999999999998765553
No 411
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=1.5e-05 Score=66.33 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998654443
No 412
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.35 E-value=3e-06 Score=70.40 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G 59 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDEG 59 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4468999999999999999999998654443
No 413
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1.5e-07 Score=81.08 Aligned_cols=127 Identities=22% Similarity=0.279 Sum_probs=86.0
Q ss_pred CCCCCCCCCCCC----eEEEEEcCCCCCHHHHHHHHhCCC---CccccCC-------------CCccceeeeeeeeEeeC
Q 025391 8 DDWELTSPSNGE----RTVVLVGRTGNGKSATGNSILGRR---AFKSRAS-------------SSGVTSTCEMQRTVLKD 67 (253)
Q Consensus 8 ~~~~~~~~~~~~----~~i~lvG~~g~GKSTl~n~l~g~~---~~~~~~~-------------~~~~t~~~~~~~~~~~~ 67 (253)
+.-++.|..+|. ++|+++.+-.+||||.-..|+-.. ...+... ..++|........+ |+
T Consensus 22 dikslhs~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fd-wk 100 (753)
T KOG0464|consen 22 DIKSLHSIINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFD-WK 100 (753)
T ss_pred cchhccCCCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecc-cc
Confidence 344455555443 689999999999999987765332 2111111 23666766666665 69
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCC
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~ 147 (253)
|.++++|||||..|+.. ++.+|+... |+++.|+|++....+...-+++.-. ....|....+||+
T Consensus 101 g~rinlidtpghvdf~l-------everclrvl----dgavav~dasagve~qtltvwrqad-----k~~ip~~~finkm 164 (753)
T KOG0464|consen 101 GHRINLIDTPGHVDFRL-------EVERCLRVL----DGAVAVFDASAGVEAQTLTVWRQAD-----KFKIPAHCFINKM 164 (753)
T ss_pred cceEeeecCCCcceEEE-------EHHHHHHHh----cCeEEEEeccCCcccceeeeehhcc-----ccCCchhhhhhhh
Confidence 99999999999998874 334565544 7999999988777666544443332 2345788889999
Q ss_pred CCCC
Q 025391 148 DELE 151 (253)
Q Consensus 148 D~~~ 151 (253)
|.+.
T Consensus 165 dk~~ 168 (753)
T KOG0464|consen 165 DKLA 168 (753)
T ss_pred hhhh
Confidence 9884
No 414
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.34 E-value=9.5e-07 Score=73.77 Aligned_cols=122 Identities=20% Similarity=0.133 Sum_probs=68.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCc---ccc---CCCC-----------ccceeeeeeeeE-------------eeC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAF---KSR---ASSS-----------GVTSTCEMQRTV-------------LKD 67 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~---~~~---~~~~-----------~~t~~~~~~~~~-------------~~~ 67 (253)
+..+|+++|++|+||||++..|++.... ..+ ..+. ............ ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4479999999999999999988765210 000 0000 000000000000 012
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCC
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~ 147 (253)
+.++.++||||.... ......++...+... .|+-+++|++++.... .-...++. |.. ....-+++||.
T Consensus 154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~~~~-d~~~~~~~----f~~--~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMKSK-DMIEIITN----FKD--IHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCccCHH-HHHHHHHH----hCC--CCCCEEEEEee
Confidence 458999999998642 233445555555433 5667888988762221 12223332 332 24678999999
Q ss_pred CCCC
Q 025391 148 DELE 151 (253)
Q Consensus 148 D~~~ 151 (253)
|...
T Consensus 222 Det~ 225 (270)
T PRK06731 222 DETA 225 (270)
T ss_pred cCCC
Confidence 9986
No 415
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.34 E-value=7.8e-06 Score=73.76 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=65.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCc--------cccCCCCcc-----------ceeeeeeeeE----------eeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAF--------KSRASSSGV-----------TSTCEMQRTV----------LKDG 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~--------~~~~~~~~~-----------t~~~~~~~~~----------~~~~ 68 (253)
....|+|+|++|+||||++..|...... ....+.... .....+.... ...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 3479999999999999999888753110 001111000 0000011100 1134
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
.+++||||||..... .....++. .+... . ....++|++.+...... ...++.+... .+.-+|+||.|
T Consensus 429 ~DLVLIDTaG~s~~D---~~l~eeL~-~L~aa-~-~~a~lLVLpAtss~~Dl-~eii~~f~~~------~~~gvILTKlD 495 (559)
T PRK12727 429 YKLVLIDTAGMGQRD---RALAAQLN-WLRAA-R-QVTSLLVLPANAHFSDL-DEVVRRFAHA------KPQGVVLTKLD 495 (559)
T ss_pred CCEEEecCCCcchhh---HHHHHHHH-HHHHh-h-cCCcEEEEECCCChhHH-HHHHHHHHhh------CCeEEEEecCc
Confidence 579999999986422 11222222 22222 1 23566777766332222 2233333321 35779999999
Q ss_pred CCCCChhhHH
Q 025391 149 ELEDNDETLE 158 (253)
Q Consensus 149 ~~~~~~~~~~ 158 (253)
....-+..+.
T Consensus 496 Et~~lG~aLs 505 (559)
T PRK12727 496 ETGRFGSALS 505 (559)
T ss_pred CccchhHHHH
Confidence 9753333333
No 416
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=5.9e-06 Score=67.88 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 55 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDSG 55 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3468999999999999999999998654443
No 417
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.33 E-value=4.5e-06 Score=67.91 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRSG 55 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4468999999999999999999998654443
No 418
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.33 E-value=1.2e-05 Score=67.07 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G 67 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAG 67 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 3468999999999999999999998654433
No 419
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.33 E-value=5.8e-06 Score=66.61 Aligned_cols=31 Identities=29% Similarity=0.294 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDSG 55 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 4468999999999999999999998654443
No 420
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=2.7e-06 Score=78.26 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-+++|+|+||+|||||++.|+|...+..+
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G 56 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDLEPSAG 56 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998654433
No 421
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.33 E-value=2e-06 Score=75.36 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=67.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCc----------cccCCCC-----------ccceeeeeeee----------EeeC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAF----------KSRASSS-----------GVTSTCEMQRT----------VLKD 67 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~----------~~~~~~~-----------~~t~~~~~~~~----------~~~~ 67 (253)
+..|+++|++|+||||++..|+..... ....++. +.......... ....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 468999999999999999888743210 0000110 00000000000 0113
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCC
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~ 147 (253)
+..+++|||||.... +.....++...+.... .++-.++|++++.... + ..+.+..+ .. ..+.-+++||.
T Consensus 254 ~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~-~~~e~~LVlsat~~~~--~--~~~~~~~~-~~--~~~~~~I~TKl 322 (388)
T PRK12723 254 DFDLVLVDTIGKSPK---DFMKLAEMKELLNACG-RDAEFHLAVSSTTKTS--D--VKEIFHQF-SP--FSYKTVIFTKL 322 (388)
T ss_pred CCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcC-CCCeEEEEEcCCCCHH--H--HHHHHHHh-cC--CCCCEEEEEec
Confidence 568999999998642 2223456666655443 2446788888874422 2 22333333 21 13578999999
Q ss_pred CCCC
Q 025391 148 DELE 151 (253)
Q Consensus 148 D~~~ 151 (253)
|...
T Consensus 323 Det~ 326 (388)
T PRK12723 323 DETT 326 (388)
T ss_pred cCCC
Confidence 9975
No 422
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.32 E-value=5.4e-06 Score=68.37 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 57 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTRPDEG 57 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4468999999999999999999998654443
No 423
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.32 E-value=2.1e-06 Score=73.23 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G 48 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG 48 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4468999999999999999999998654443
No 424
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.32 E-value=2.8e-06 Score=73.64 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..|
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G 96 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTSPDAG 96 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCce
Confidence 4469999999999999999999998655443
No 425
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.32 E-value=5.8e-06 Score=66.46 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 55 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIKESSG 55 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 4468999999999999999999998654444
No 426
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.32 E-value=1.2e-05 Score=65.28 Aligned_cols=31 Identities=32% Similarity=0.313 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 59 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSG 59 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCce
Confidence 3468999999999999999999998654443
No 427
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.32 E-value=2.2e-06 Score=69.68 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 55 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG 55 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3468999999999999999999998654433
No 428
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.32 E-value=5.4e-06 Score=67.08 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 57 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSRG 57 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998654333
No 429
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.32 E-value=8.3e-06 Score=65.54 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 56 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARPDAG 56 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998654443
No 430
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.32 E-value=6.4e-06 Score=66.92 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSG 57 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3458999999999999999999998654443
No 431
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.32 E-value=2.9e-06 Score=68.78 Aligned_cols=31 Identities=35% Similarity=0.386 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 58 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTRG 58 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4468999999999999999999998654433
No 432
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=3.4e-06 Score=70.61 Aligned_cols=120 Identities=19% Similarity=0.245 Sum_probs=71.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcc-ccCCCCccceeeeee----------------ee----E-----eeCCeE
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQ----------------RT----V-----LKDGQV 70 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~-~~~~~~~~t~~~~~~----------------~~----~-----~~~~~~ 70 (253)
++..+|+++|+-..|||||..+|+|--... +.....++|....+. .. + ..--++
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 566999999999999999999999854200 000111111111100 00 0 001247
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCC-HHHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 025391 71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-QEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 71 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
+.|+|.||+. .-++.+++-+ .--|+.|+|+.++.++- ++.++.+-.+ +..|- ++++|+=||.|.
T Consensus 88 VSfVDaPGHe----------~LMATMLsGA-AlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigi---k~iiIvQNKIDl 152 (415)
T COG5257 88 VSFVDAPGHE----------TLMATMLSGA-ALMDGALLVIAANEPCPQPQTREHLMAL-EIIGI---KNIIIVQNKIDL 152 (415)
T ss_pred EEEeeCCchH----------HHHHHHhcch-hhhcceEEEEecCCCCCCCchHHHHHHH-hhhcc---ceEEEEecccce
Confidence 8999999973 2223333211 12289999999986654 3345555444 33454 489999999999
Q ss_pred CC
Q 025391 150 LE 151 (253)
Q Consensus 150 ~~ 151 (253)
..
T Consensus 153 V~ 154 (415)
T COG5257 153 VS 154 (415)
T ss_pred ec
Confidence 96
No 433
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.31 E-value=6.8e-06 Score=65.72 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=28.9
Q ss_pred CccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccCeEEEEEeCCCC
Q 025391 103 GIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 103 ~~~~~l~v~d~~~~~~~~~~~~l-~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
.+..++++++++..+++.....+ ..+.+. ... .++|++||.-.
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~-~~~---~tiIiitH~~~ 177 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEF-SKE---TQFIVITHRKG 177 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHh-ccC---CEEEEEECCHH
Confidence 34468888999989999885554 444443 322 47888899643
No 434
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.31 E-value=1.9e-05 Score=64.69 Aligned_cols=30 Identities=33% Similarity=0.354 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 40 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQPTSG 40 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 358999999999999999999998654443
No 435
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.31 E-value=2.5e-06 Score=72.90 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G 59 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMISPDRG 59 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3468999999999999999999998654433
No 436
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.31 E-value=3.1e-06 Score=68.05 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSG 53 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 3468999999999999999999998654443
No 437
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.31 E-value=1.7e-06 Score=77.63 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
...|+|||+||+||||++..|++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 3689999999999999999998754
No 438
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.31 E-value=4.8e-06 Score=68.38 Aligned_cols=31 Identities=29% Similarity=0.204 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 55 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTSG 55 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 4468999999999999999999998654443
No 439
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.31 E-value=6.6e-06 Score=70.20 Aligned_cols=31 Identities=35% Similarity=0.353 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
++-.++|+|+||+|||||++.|+|...+..+
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G 57 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLPPDSG 57 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4468999999999999999999998654444
No 440
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.31 E-value=1.2e-05 Score=65.08 Aligned_cols=31 Identities=32% Similarity=0.302 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTSG 56 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3468999999999999999999998654333
No 441
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=5.7e-06 Score=68.22 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 58 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4468999999999999999999998654443
No 442
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.31 E-value=5e-06 Score=77.45 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
++-+++|+|++|+|||||++.|+|.. +..|
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G 404 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL-PYQG 404 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 55799999999999999999999986 4433
No 443
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.31 E-value=3.7e-06 Score=70.33 Aligned_cols=31 Identities=32% Similarity=0.328 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G 79 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLSPTVG 79 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 4568999999999999999999998654433
No 444
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.31 E-value=6.3e-06 Score=66.86 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 60 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 3468999999999999999999998654433
No 445
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=2.2e-06 Score=83.60 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=79.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCC-----CccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCc-H---HHHHH
Q 025391 22 VVLVGRTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-E---FVGKE 92 (253)
Q Consensus 22 i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~---~~~~~ 92 (253)
.++||++|+||||++..- |...+...... ...|..| +.+-+...++|||.|-.-..++. + ..+..
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~c-----dwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNC-----DWWFTDEAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCccc-----CcccccceEEEcCCcceecccCcchhhHHHHHH
Confidence 578999999999988653 44333222111 1113333 34556788999999987655422 2 23344
Q ss_pred HHHHHHhh--cCCccEEEEEEeCCCCC--CHHH--------HHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHH
Q 025391 93 IVKCIGMA--KDGIHAVLVVFSVRSRF--SQEE--------EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDY 160 (253)
Q Consensus 93 ~~~~~~~~--~~~~~~~l~v~d~~~~~--~~~~--------~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~ 160 (253)
+...+... .+..+++|+.+++.+-+ +..+ +..++.+...++- ..|++|++||.|.+. -+++|
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~--~~PVYl~lTk~Dll~----GF~ef 275 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA--RLPVYLVLTKADLLP----GFEEF 275 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc--CCceEEEEecccccc----cHHHH
Confidence 44444322 34669999999875322 2222 3335555555544 459999999999997 36666
Q ss_pred Hcc
Q 025391 161 LGR 163 (253)
Q Consensus 161 ~~~ 163 (253)
...
T Consensus 276 F~~ 278 (1188)
T COG3523 276 FGS 278 (1188)
T ss_pred Hhc
Confidence 663
No 446
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.30 E-value=1.9e-06 Score=76.75 Aligned_cols=121 Identities=18% Similarity=0.134 Sum_probs=66.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC------CccccCCCCcc-----------ceeeeeeee--------------Eee
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR------AFKSRASSSGV-----------TSTCEMQRT--------------VLK 66 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~------~~~~~~~~~~~-----------t~~~~~~~~--------------~~~ 66 (253)
++..|+++|++|+||||++..|+..- +.....+.... ......+.. ...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45789999999999999998775321 10000000000 000000000 001
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeC
Q 025391 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (253)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k 146 (253)
....++++||||.... .+....++....... .||.+++|+|++.. ...+..... |... ....-+|+||
T Consensus 174 ~~~DvVIIDTAGr~~~---d~~lm~El~~l~~~~--~pdevlLVvda~~g-----q~av~~a~~-F~~~-l~i~gvIlTK 241 (437)
T PRK00771 174 KKADVIIVDTAGRHAL---EEDLIEEMKEIKEAV--KPDEVLLVIDATIG-----QQAKNQAKA-FHEA-VGIGGIIITK 241 (437)
T ss_pred hcCCEEEEECCCcccc---hHHHHHHHHHHHHHh--cccceeEEEecccc-----HHHHHHHHH-HHhc-CCCCEEEEec
Confidence 2347899999998643 344445555544332 56889999998643 123333333 3322 1246788999
Q ss_pred CCCC
Q 025391 147 GDEL 150 (253)
Q Consensus 147 ~D~~ 150 (253)
.|..
T Consensus 242 lD~~ 245 (437)
T PRK00771 242 LDGT 245 (437)
T ss_pred ccCC
Confidence 9976
No 447
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.30 E-value=1.4e-05 Score=64.60 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEEPDSG 55 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4468999999999999999999998654433
No 448
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.30 E-value=2.3e-06 Score=69.02 Aligned_cols=31 Identities=32% Similarity=0.306 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIILPDSG 55 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4468999999999999999999998654433
No 449
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.30 E-value=1.1e-05 Score=64.39 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLRPDSG 55 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 4468999999999999999999998654433
No 450
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.30 E-value=5.8e-06 Score=63.73 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.++++|..|+|||||++.++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999998866
No 451
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.29 E-value=9.3e-06 Score=65.64 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 55 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDSG 55 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 3468999999999999999999998654443
No 452
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.29 E-value=1.7e-05 Score=63.74 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=28.6
Q ss_pred cEEEEEEeCCCCCCHHHHH--HHHHHHHHhcccccCeEEEEEeCCCC
Q 025391 105 HAVLVVFSVRSRFSQEEEA--ALHSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 105 ~~~l~v~d~~~~~~~~~~~--~l~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
..++++++++..+++.... +.+.+.+..... ..++++++|...
T Consensus 140 p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~--~~~iiiitH~~~ 184 (204)
T cd03240 140 CGILALDEPTTNLDEENIEESLAEIIEERKSQK--NFQLIVITHDEE 184 (204)
T ss_pred CCEEEEcCCccccCHHHHHHHHHHHHHHHHhcc--CCEEEEEEecHH
Confidence 4778888998899998855 455555542210 147888999643
No 453
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.28 E-value=3.9e-06 Score=78.91 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.++-+|+|+|++|||||||++.|+|...+..|
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 34579999999999999999999998765544
No 454
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.28 E-value=5.4e-06 Score=67.87 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4469999999999999999999998654443
No 455
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.28 E-value=1.3e-05 Score=64.78 Aligned_cols=31 Identities=35% Similarity=0.389 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG 55 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4468999999999999999999998654433
No 456
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.28 E-value=8.2e-06 Score=70.07 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=49.7
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHHhccc--c
Q 025391 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR--------FSQEEEAALHSLQTLFGKK--I 136 (253)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~--------~~~~~~~~l~~l~~~~g~~--~ 136 (253)
++..+.+||++|... .++.+..++.+++++|||++.++. ....-...+..+...+..+ .
T Consensus 159 ~~~~~~~~DvgGq~~-----------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 159 KNLKFRMFDVGGQRS-----------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred cceEEEEECCCCCcc-----------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 566788999999742 335555677899999999998732 1122234444455544433 2
Q ss_pred cCeEEEEEeCCCCCC
Q 025391 137 FDYMIVVFTGGDELE 151 (253)
Q Consensus 137 ~~~~ivv~~k~D~~~ 151 (253)
..|++|++||.|.+.
T Consensus 228 ~~pill~~NK~D~f~ 242 (317)
T cd00066 228 NTSIILFLNKKDLFE 242 (317)
T ss_pred CCCEEEEccChHHHH
Confidence 469999999999884
No 457
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.27 E-value=3.5e-06 Score=72.05 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G 62 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTHPDAG 62 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3458999999999999999999998665444
No 458
>PRK10867 signal recognition particle protein; Provisional
Probab=98.27 E-value=3.3e-06 Score=75.00 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=40.4
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCC
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~ 147 (253)
+.+++++||||.... ++....++....... .|+.+++|+|++. ........+.+.+.+ ...-+|+||.
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v--~p~evllVlda~~--gq~av~~a~~F~~~~-----~i~giIlTKl 250 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAAV--NPDEILLVVDAMT--GQDAVNTAKAFNEAL-----GLTGVILTKL 250 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHhh--CCCeEEEEEeccc--HHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence 457999999997642 233334444443322 5678899998752 112222233333222 2467788999
Q ss_pred CCC
Q 025391 148 DEL 150 (253)
Q Consensus 148 D~~ 150 (253)
|..
T Consensus 251 D~~ 253 (433)
T PRK10867 251 DGD 253 (433)
T ss_pred cCc
Confidence 964
No 459
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=8.3e-06 Score=67.81 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 60 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG 60 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence 4568999999999999999999998654444
No 460
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.26 E-value=2.9e-05 Score=63.44 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G 65 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDDGSSG 65 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 4469999999999999999999998654443
No 461
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.26 E-value=4.1e-06 Score=67.11 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 56 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG 56 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 4469999999999999999999998655444
No 462
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.26 E-value=1.5e-05 Score=66.93 Aligned_cols=31 Identities=26% Similarity=0.214 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G 79 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTSG 79 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 4468999999999999999999998654443
No 463
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.26 E-value=1.2e-05 Score=69.73 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=50.1
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC--------CHHHHHHHHHHHHHhccc--c
Q 025391 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQTLFGKK--I 136 (253)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~--------~~~~~~~l~~l~~~~g~~--~ 136 (253)
++..+.+||..|.. ..++.+..++.+++++|||++.++.- ...-...+..+...+..+ .
T Consensus 182 ~~~~~~~~DvgGqr-----------~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 182 KKLFFRMFDVGGQR-----------SERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred CCeEEEEEecCCch-----------hhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 56678899998873 23355566778999999999987321 112234445555555443 3
Q ss_pred cCeEEEEEeCCCCCC
Q 025391 137 FDYMIVVFTGGDELE 151 (253)
Q Consensus 137 ~~~~ivv~~k~D~~~ 151 (253)
..|++|++||.|.+.
T Consensus 251 ~~piil~~NK~D~~~ 265 (342)
T smart00275 251 NTSIILFLNKIDLFE 265 (342)
T ss_pred CCcEEEEEecHHhHH
Confidence 469999999999984
No 464
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.26 E-value=1.7e-05 Score=64.67 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~ 47 (253)
+.-.++|+|+||+|||||++.|+|...+..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~ 76 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYPPDS 76 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 446899999999999999999999865433
No 465
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.25 E-value=1.9e-05 Score=63.92 Aligned_cols=31 Identities=32% Similarity=0.323 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIEPASG 53 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4468999999999999999999998665444
No 466
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.24 E-value=2e-05 Score=63.51 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAAG 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4468999999999999999999998654443
No 467
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.24 E-value=6.7e-05 Score=60.70 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
.-.++|+|+||+|||||+++|.+
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHhee
Confidence 34899999999999999999984
No 468
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.24 E-value=8.6e-06 Score=66.58 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 3358999999999999999999998765444
No 469
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.24 E-value=1.5e-05 Score=64.60 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSIL 40 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~ 40 (253)
.+++|.|+||+|||||++.|.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999986
No 470
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.24 E-value=6.5e-06 Score=72.70 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
-.=+|+|.||||||||++.|.|...+..+
T Consensus 31 eIHaLLGENGAGKSTLm~iL~G~~~P~~G 59 (501)
T COG3845 31 EIHALLGENGAGKSTLMKILFGLYQPDSG 59 (501)
T ss_pred cEEEEeccCCCCHHHHHHHHhCcccCCcc
Confidence 45689999999999999999999776655
No 471
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.23 E-value=9e-06 Score=75.64 Aligned_cols=31 Identities=35% Similarity=0.498 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
++-+++|+|++|+|||||++.|+|...+..|
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G 398 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCc
Confidence 4578999999999999999999998765544
No 472
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.23 E-value=2.8e-05 Score=63.28 Aligned_cols=31 Identities=29% Similarity=0.232 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILRPTSG 55 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4468999999999999999999998654433
No 473
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=1.2e-05 Score=66.23 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 60 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGDPRATSG 60 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 4468999999999999999999998654444
No 474
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.23 E-value=4.5e-05 Score=69.13 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
++-.++|+|+||+|||||++.|+|...+..|
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG 79 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG 79 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCce
Confidence 4468999999999999999999998654443
No 475
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.9e-06 Score=74.19 Aligned_cols=40 Identities=8% Similarity=-0.046 Sum_probs=30.2
Q ss_pred EEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCC
Q 025391 106 AVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 106 ~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
-+++++++|..+++.. ++++..+.+.+.. .+++.+||.-.
T Consensus 494 pl~lLDEPTegLD~~TE~~vL~ll~~~~~~----kTll~vTHrL~ 534 (573)
T COG4987 494 PLWLLDEPTEGLDPITERQVLALLFEHAEG----KTLLMVTHRLR 534 (573)
T ss_pred CeEEecCCcccCChhhHHHHHHHHHHHhcC----CeEEEEecccc
Confidence 5677778999999986 7778877776654 48899998433
No 476
>PLN03073 ABC transporter F family; Provisional
Probab=98.22 E-value=7.3e-06 Score=77.66 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-+|+|+|+||+|||||++.|+|...+..+
T Consensus 534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G 564 (718)
T PLN03073 534 LDSRIAMVGPNGIGKSTILKLISGELQPSSG 564 (718)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 3458999999999999999999998654444
No 477
>PRK10908 cell division protein FtsE; Provisional
Probab=98.22 E-value=1.2e-05 Score=65.53 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIERPSAG 57 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4468999999999999999999998654443
No 478
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.22 E-value=9.1e-06 Score=75.72 Aligned_cols=31 Identities=35% Similarity=0.302 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-+|+|+|++|+|||||++.|+|...+..|
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G 390 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 4578999999999999999999998765544
No 479
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.21 E-value=8.4e-06 Score=74.63 Aligned_cols=31 Identities=29% Similarity=0.286 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G 66 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3468999999999999999999998654443
No 480
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.20 E-value=1.2e-05 Score=65.37 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 59 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRLVELSSG 59 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence 358999999999999999999998654443
No 481
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.20 E-value=5.8e-06 Score=66.75 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-..+|+|++|+|||||++.|+|...+..+
T Consensus 34 Gei~~iiGgSGsGKStlLr~I~Gll~P~~G 63 (263)
T COG1127 34 GEILAILGGSGSGKSTLLRLILGLLRPDKG 63 (263)
T ss_pred CcEEEEECCCCcCHHHHHHHHhccCCCCCC
Confidence 367899999999999999999999876655
No 482
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=1.4e-06 Score=78.25 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=97.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc---CC-------------CCccceeeeeeeeEeeCCeEEEEEeCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR---AS-------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~---~~-------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (253)
+..++|+++.+-.+||||+-+.++-....... .. ..++|......+.. |...++++|||||+.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~-w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFT-WRDYRINIIDTPGHV 115 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeee-eccceeEEecCCCce
Confidence 35578999999999999999887655432111 11 12455555555554 578899999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhh-HHH
Q 025391 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET-LED 159 (253)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~-~~~ 159 (253)
|+...-+ +++.. .|+.++|+++..........+.+.+.++ + .|.+..+||.|....++-. +..
T Consensus 116 DFT~EVe-------RALrV----lDGaVlvl~aV~GVqsQt~tV~rQ~~ry-~----vP~i~FiNKmDRmGa~~~~~l~~ 179 (721)
T KOG0465|consen 116 DFTFEVE-------RALRV----LDGAVLVLDAVAGVESQTETVWRQMKRY-N----VPRICFINKMDRMGASPFRTLNQ 179 (721)
T ss_pred eEEEEeh-------hhhhh----ccCeEEEEEcccceehhhHHHHHHHHhc-C----CCeEEEEehhhhcCCChHHHHHH
Confidence 8764333 34333 3677778777667777777777777664 3 4789999999999755433 333
Q ss_pred HHcccCCchh--h---hhHHHhhhHHHHHHH
Q 025391 160 YLGRECPKPL--K---KGATKLRDQQFEVDS 185 (253)
Q Consensus 160 ~~~~~~~~~l--~---~~~~~~~~~~~~~~~ 185 (253)
...+...... + -....+..+..+++.
T Consensus 180 i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~ 210 (721)
T KOG0465|consen 180 IRTKLNHKPAVVQIPIGSESNFKGVVDLVNG 210 (721)
T ss_pred HHhhcCCchheeEccccccccchhHHhhhhc
Confidence 3332111111 1 222356667776664
No 483
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.20 E-value=1.3e-05 Score=66.69 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G 55 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLG 55 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 45579999999999999999999999765554
No 484
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.20 E-value=5.5e-06 Score=76.61 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G 379 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSG 379 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 3458999999999999999999998655444
No 485
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=5.6e-06 Score=76.16 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G 374 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGELEPDSG 374 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 3458999999999999999999998654443
No 486
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=3e-05 Score=62.24 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
+.-.++|+|+||+|||||++.|+|...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 446999999999999999999999865
No 487
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.19 E-value=1.8e-05 Score=64.32 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G 59 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 4468999999999999999999998654443
No 488
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.19 E-value=1.4e-05 Score=64.26 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 63 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLEAEEG 63 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 4468999999999999999999998654433
No 489
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.18 E-value=2.1e-05 Score=69.64 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 28 ~Geiv~liGpNGaGKSTLLk~LaGll~p~sG 58 (402)
T PRK09536 28 EGSLVGLVGPNGAGKTTLLRAINGTLTPTAG 58 (402)
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 4468999999999999999999998654443
No 490
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.18 E-value=9.8e-06 Score=74.51 Aligned_cols=31 Identities=35% Similarity=0.369 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
++-+++|+|++|+|||||++.|+|...+..|
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 377 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGFVDPTEG 377 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 5579999999999999999999998765544
No 491
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.18 E-value=3.9e-05 Score=59.49 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=29.9
Q ss_pred EEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 106 AVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 106 ~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+++.+++|+.++++- -+.++.+.....+. .+++|+||-=.+.
T Consensus 172 ~vmLFDEPTSALDPElVgEVLkv~~~LAeEg---rTMv~VTHEM~FA 215 (256)
T COG4598 172 EVMLFDEPTSALDPELVGEVLKVMQDLAEEG---RTMVVVTHEMGFA 215 (256)
T ss_pred ceEeecCCcccCCHHHHHHHHHHHHHHHHhC---CeEEEEeeehhHH
Confidence 5667788888999886 55566665553333 6999999965553
No 492
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.18 E-value=2.8e-05 Score=63.94 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G 76 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQPTSG 76 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 4468999999999999999999998654443
No 493
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.18 E-value=8.8e-06 Score=75.86 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-+|+|+|++|+|||||++.|+|...+..|
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G 396 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 4478999999999999999999998765544
No 494
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.18 E-value=1.6e-05 Score=63.15 Aligned_cols=50 Identities=26% Similarity=0.262 Sum_probs=30.0
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~ 147 (253)
-|+.++..-..-+|+++++++.+++-.-.-++.+...+.. ..+||++||-
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHn 207 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHN 207 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCC
Confidence 3443333322367788888888888774444443333332 3699999993
No 495
>PRK13409 putative ATPase RIL; Provisional
Probab=98.17 E-value=8.5e-06 Score=75.66 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=29.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~ 49 (253)
...+.-.++|+|+||+|||||++.|+|...+..|.
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~ 129 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGD 129 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcc
Confidence 34556799999999999999999999987665554
No 496
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.17 E-value=5.9e-05 Score=61.47 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 35 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKG 35 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998654443
No 497
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=1.3e-05 Score=69.73 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G 60 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLERPTSG 60 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 3468999999999999999999998755443
No 498
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.16 E-value=1.8e-05 Score=63.34 Aligned_cols=122 Identities=16% Similarity=0.053 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCc-cccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..++|+|+||+|||||++.|.|.... ..+............... -..+.+.|....... ....+. .++...+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l----~~~~~~~d~l~~~~s-~~~~e~-~~~~~iL~ 99 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKI----FTSIRVSDDLRDGIS-YFYAEL-RRLKEIVE 99 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceE----EEeccchhccccccC-hHHHHH-HHHHHHHH
Confidence 57899999999999999999764321 011100000000000000 001112222111110 111111 34444444
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHH-H-HHHHHhcccccCeEEEEEeCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAAL-H-SLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l-~-~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
..-....-++++++++..++..+...+ . .+...... ..+++++||.-.+
T Consensus 100 ~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~---~~tiiivTH~~~~ 150 (199)
T cd03283 100 KAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK---NTIGIISTHDLEL 150 (199)
T ss_pred hccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHC---CCEEEEEcCcHHH
Confidence 332123478888888888888875433 3 23333211 3588888987443
No 499
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.16 E-value=2.8e-05 Score=67.92 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 23 Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G 52 (354)
T TIGR02142 23 QGVTAIFGRSGSGKTTLIRLIAGLTRPDEG 52 (354)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 358999999999999999999998655443
No 500
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=2.6e-05 Score=67.14 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G 81 (320)
T PRK13631 51 KNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG 81 (320)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4468999999999999999999998665444
Done!