Query 025391
Match_columns 253
No_of_seqs 225 out of 2331
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 09:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxx_A GTPase IMAP family memb 99.9 9E-26 3.1E-30 184.9 17.6 143 16-162 26-168 (239)
2 3lxw_A GTPase IMAP family memb 99.9 9.1E-25 3.1E-29 179.9 18.8 193 16-213 18-238 (247)
3 2xtp_A GTPase IMAP family memb 99.9 3.8E-22 1.3E-26 165.2 20.8 135 15-151 18-153 (260)
4 3def_A T7I23.11 protein; chlor 99.8 3.2E-19 1.1E-23 147.9 16.2 141 18-162 35-176 (262)
5 1h65_A Chloroplast outer envel 99.8 6.5E-19 2.2E-23 146.6 15.7 141 18-162 38-179 (270)
6 1wf3_A GTP-binding protein; GT 99.8 1.9E-17 6.4E-22 139.9 17.4 125 19-151 7-131 (301)
7 4dhe_A Probable GTP-binding pr 99.8 5.2E-18 1.8E-22 136.6 13.0 130 17-151 27-158 (223)
8 3iev_A GTP-binding protein ERA 99.8 7.1E-18 2.4E-22 143.0 14.3 129 14-150 5-135 (308)
9 1svi_A GTP-binding protein YSX 99.7 1E-16 3.4E-21 126.2 16.3 125 17-151 21-148 (195)
10 2dyk_A GTP-binding protein; GT 99.7 4.9E-17 1.7E-21 123.9 12.7 152 20-183 2-153 (161)
11 2qu8_A Putative nucleolar GTP- 99.7 5.6E-16 1.9E-20 125.5 18.2 134 13-151 23-156 (228)
12 2lkc_A Translation initiation 99.7 1.6E-16 5.6E-21 123.0 12.9 126 17-161 6-131 (178)
13 3pqc_A Probable GTP-binding pr 99.7 9.2E-16 3.1E-20 120.4 17.3 126 16-151 20-147 (195)
14 2gj8_A MNME, tRNA modification 99.7 1.9E-16 6.4E-21 122.8 12.6 127 18-151 3-129 (172)
15 3tw8_B RAS-related protein RAB 99.7 2.3E-16 7.8E-21 122.3 13.0 119 16-151 6-127 (181)
16 1z08_A RAS-related protein RAB 99.7 1.2E-16 4.1E-21 122.8 11.1 119 18-151 5-125 (170)
17 2gf9_A RAS-related protein RAB 99.7 1.7E-16 5.7E-21 124.6 12.1 125 13-151 16-141 (189)
18 1ky3_A GTP-binding protein YPT 99.7 1.7E-16 5.7E-21 123.2 11.7 125 16-151 5-132 (182)
19 1ek0_A Protein (GTP-binding pr 99.7 5E-17 1.7E-21 124.7 8.3 119 19-151 3-122 (170)
20 1z0f_A RAB14, member RAS oncog 99.7 1.6E-16 5.4E-21 123.0 10.9 121 17-151 13-134 (179)
21 3t5d_A Septin-7; GTP-binding p 99.7 5E-16 1.7E-20 129.4 14.7 134 18-159 7-164 (274)
22 3tkl_A RAS-related protein RAB 99.7 9.1E-17 3.1E-21 126.5 9.6 119 17-151 14-135 (196)
23 4dkx_A RAS-related protein RAB 99.7 1.4E-16 4.6E-21 128.3 10.8 153 18-184 12-168 (216)
24 2efe_B Small GTP-binding prote 99.7 1.4E-16 4.9E-21 123.7 10.4 121 17-151 10-131 (181)
25 2bme_A RAB4A, RAS-related prot 99.7 1.9E-16 6.5E-21 123.6 11.1 119 17-151 8-129 (186)
26 1r2q_A RAS-related protein RAB 99.7 9.7E-17 3.3E-21 123.1 9.0 120 18-151 5-125 (170)
27 1z0j_A RAB-22, RAS-related pro 99.7 1.4E-16 4.8E-21 122.3 9.8 120 18-151 5-125 (170)
28 2fg5_A RAB-22B, RAS-related pr 99.7 1.6E-16 5.4E-21 125.2 10.3 121 17-151 21-142 (192)
29 2bcg_Y Protein YP2, GTP-bindin 99.7 3E-16 1E-20 124.8 11.8 118 18-151 7-127 (206)
30 2g6b_A RAS-related protein RAB 99.7 4.1E-16 1.4E-20 121.0 11.9 120 17-151 8-130 (180)
31 2oil_A CATX-8, RAS-related pro 99.7 2.7E-16 9.4E-21 123.7 10.8 120 18-151 24-144 (193)
32 1z06_A RAS-related protein RAB 99.7 3.8E-16 1.3E-20 122.5 11.5 120 17-151 18-141 (189)
33 1wms_A RAB-9, RAB9, RAS-relate 99.7 5.5E-16 1.9E-20 119.9 12.1 119 18-150 6-129 (177)
34 3clv_A RAB5 protein, putative; 99.7 6.3E-16 2.2E-20 122.0 12.7 147 18-183 6-195 (208)
35 4bas_A ADP-ribosylation factor 99.7 5.8E-16 2E-20 122.1 12.4 123 14-151 12-141 (199)
36 2erx_A GTP-binding protein DI- 99.7 3.3E-16 1.1E-20 120.3 10.5 120 19-151 3-123 (172)
37 1zbd_A Rabphilin-3A; G protein 99.7 9.6E-16 3.3E-20 121.5 13.5 118 19-151 8-127 (203)
38 1ksh_A ARF-like protein 2; sma 99.7 2E-15 6.7E-20 118.0 15.0 116 17-151 16-133 (186)
39 1mky_A Probable GTP-binding pr 99.7 7.6E-16 2.6E-20 136.6 14.1 123 20-151 2-124 (439)
40 3bc1_A RAS-related protein RAB 99.7 1.3E-15 4.4E-20 119.3 13.5 121 17-151 9-141 (195)
41 3t1o_A Gliding protein MGLA; G 99.7 2.2E-15 7.4E-20 118.5 14.6 157 17-184 12-184 (198)
42 2a5j_A RAS-related protein RAB 99.7 4.4E-16 1.5E-20 122.4 10.5 119 17-151 19-140 (191)
43 2il1_A RAB12; G-protein, GDP, 99.7 2E-16 7E-21 124.6 8.4 121 15-151 22-145 (192)
44 1g16_A RAS-related protein SEC 99.7 2.4E-16 8.3E-21 120.9 8.5 117 19-150 3-121 (170)
45 3q72_A GTP-binding protein RAD 99.7 1.1E-15 3.8E-20 116.9 12.1 151 19-184 2-156 (166)
46 2hxs_A RAB-26, RAS-related pro 99.7 2.3E-16 8E-21 122.1 8.3 122 17-151 4-129 (178)
47 2nzj_A GTP-binding protein REM 99.7 1.3E-15 4.4E-20 117.5 12.5 120 18-151 3-125 (175)
48 2o52_A RAS-related protein RAB 99.7 1.9E-16 6.4E-21 125.7 7.8 119 17-151 23-144 (200)
49 2p5s_A RAS and EF-hand domain 99.7 2.1E-16 7.3E-21 125.2 8.0 120 17-150 26-146 (199)
50 1upt_A ARL1, ADP-ribosylation 99.7 3E-15 1E-19 115.0 14.3 115 18-151 6-122 (171)
51 2fu5_C RAS-related protein RAB 99.6 3.3E-16 1.1E-20 122.0 8.7 118 18-151 7-127 (183)
52 3oes_A GTPase rhebl1; small GT 99.6 6.9E-16 2.3E-20 122.4 10.6 121 17-151 22-143 (201)
53 1z2a_A RAS-related protein RAB 99.6 1.9E-16 6.5E-21 121.3 7.1 118 18-151 4-123 (168)
54 2yc2_C IFT27, small RAB-relate 99.6 1.2E-15 4E-20 121.1 11.9 121 18-151 19-146 (208)
55 2gf0_A GTP-binding protein DI- 99.6 7.1E-16 2.4E-20 121.6 10.5 119 18-151 7-128 (199)
56 1zd9_A ADP-ribosylation factor 99.6 2.9E-15 1E-19 117.5 14.0 116 18-151 21-138 (188)
57 4dsu_A GTPase KRAS, isoform 2B 99.6 6.9E-16 2.4E-20 120.5 10.2 118 18-151 3-123 (189)
58 1m2o_B GTP-binding protein SAR 99.6 1.4E-15 4.8E-20 119.7 11.9 127 17-162 21-150 (190)
59 3llu_A RAS-related GTP-binding 99.6 8.3E-16 2.8E-20 121.5 10.5 129 14-151 15-143 (196)
60 1vg8_A RAS-related protein RAB 99.6 4.9E-16 1.7E-20 123.4 9.2 156 16-184 5-167 (207)
61 3t5g_A GTP-binding protein RHE 99.6 1.1E-15 3.6E-20 118.9 10.9 118 18-151 5-125 (181)
62 2ew1_A RAS-related protein RAB 99.6 7E-16 2.4E-20 122.7 10.0 118 18-151 25-145 (201)
63 1x3s_A RAS-related protein RAB 99.6 3E-16 1E-20 123.3 7.7 120 18-151 14-135 (195)
64 2hup_A RAS-related protein RAB 99.6 7.1E-16 2.4E-20 122.5 10.0 151 18-184 28-185 (201)
65 2fn4_A P23, RAS-related protei 99.6 1.3E-15 4.5E-20 118.0 11.3 122 14-151 4-128 (181)
66 2fh5_B SR-beta, signal recogni 99.6 2.5E-15 8.5E-20 120.2 13.2 117 18-151 6-129 (214)
67 3dz8_A RAS-related protein RAB 99.6 2.9E-16 9.9E-21 123.5 7.5 120 18-151 22-142 (191)
68 2q3h_A RAS homolog gene family 99.6 1.7E-15 5.8E-20 119.9 11.7 119 15-151 16-138 (201)
69 4djt_A GTP-binding nuclear pro 99.6 2.2E-16 7.4E-21 126.7 6.5 119 18-151 10-131 (218)
70 1c1y_A RAS-related protein RAP 99.6 1.6E-15 5.5E-20 116.0 10.9 117 19-151 3-122 (167)
71 2y8e_A RAB-protein 6, GH09086P 99.6 2.4E-16 8.1E-21 122.0 6.3 117 19-151 14-133 (179)
72 2h17_A ADP-ribosylation factor 99.6 1.6E-15 5.4E-20 118.2 10.8 116 17-151 19-136 (181)
73 1u8z_A RAS-related protein RAL 99.6 1.3E-15 4.5E-20 116.4 10.1 118 18-151 3-123 (168)
74 2ce2_X GTPase HRAS; signaling 99.6 3.5E-15 1.2E-19 113.6 12.1 117 19-151 3-122 (166)
75 3reg_A RHO-like small GTPase; 99.6 1.4E-15 4.7E-20 119.8 10.1 117 17-151 21-141 (194)
76 3q3j_B RHO-related GTP-binding 99.6 1.5E-15 5.2E-20 121.8 10.4 118 17-151 25-145 (214)
77 1r8s_A ADP-ribosylation factor 99.6 5.7E-15 1.9E-19 112.7 13.2 113 20-151 1-115 (164)
78 1fzq_A ADP-ribosylation factor 99.6 1E-14 3.4E-19 113.8 14.7 116 17-151 14-131 (181)
79 2e87_A Hypothetical protein PH 99.6 6.2E-14 2.1E-18 121.1 21.1 127 17-151 165-294 (357)
80 3cph_A RAS-related protein SEC 99.6 7.1E-16 2.4E-20 123.0 8.2 119 16-150 17-138 (213)
81 2gco_A H9, RHO-related GTP-bin 99.6 1.6E-15 5.3E-20 120.4 10.0 123 11-151 17-143 (201)
82 2bov_A RAla, RAS-related prote 99.6 7.6E-15 2.6E-19 116.3 14.0 119 17-151 12-133 (206)
83 3t34_A Dynamin-related protein 99.6 5.9E-15 2E-19 127.6 14.5 132 18-152 33-218 (360)
84 3gee_A MNME, tRNA modification 99.6 2.4E-15 8.4E-20 134.1 12.3 125 19-152 233-358 (476)
85 3kkq_A RAS-related protein M-R 99.6 1.8E-15 6E-20 117.9 10.0 124 12-151 11-137 (183)
86 3con_A GTPase NRAS; structural 99.6 4E-15 1.4E-19 116.6 12.1 118 18-151 20-140 (190)
87 4dcu_A GTP-binding protein ENG 99.6 7.4E-16 2.5E-20 137.3 8.7 123 19-151 23-145 (456)
88 2f7s_A C25KG, RAS-related prot 99.6 3.3E-15 1.1E-19 119.7 11.7 117 18-151 24-155 (217)
89 2h57_A ADP-ribosylation factor 99.6 2.4E-15 8.3E-20 118.0 10.6 121 16-151 18-140 (190)
90 3r7w_A Gtpase1, GTP-binding pr 99.6 4.2E-15 1.5E-19 125.8 12.8 125 19-151 3-129 (307)
91 2wji_A Ferrous iron transport 99.6 6.7E-15 2.3E-19 113.0 12.8 119 19-150 3-121 (165)
92 1kao_A RAP2A; GTP-binding prot 99.6 3.1E-15 1.1E-19 114.1 10.8 117 19-151 3-122 (167)
93 1zj6_A ADP-ribosylation factor 99.6 1.3E-14 4.3E-19 113.6 14.4 116 17-151 14-131 (187)
94 2a9k_A RAS-related protein RAL 99.6 2.7E-15 9.4E-20 116.8 10.5 118 18-151 17-137 (187)
95 1moz_A ARL1, ADP-ribosylation 99.6 3.7E-15 1.3E-19 115.9 11.2 127 17-162 16-145 (183)
96 3cpj_B GTP-binding protein YPT 99.6 1.2E-15 3.9E-20 123.2 8.5 119 17-151 11-132 (223)
97 3q85_A GTP-binding protein REM 99.6 2.3E-15 7.9E-20 115.5 9.9 152 19-184 2-159 (169)
98 2atv_A RERG, RAS-like estrogen 99.6 2.8E-15 9.6E-20 118.3 10.5 127 8-151 16-146 (196)
99 2atx_A Small GTP binding prote 99.6 4.7E-15 1.6E-19 116.7 11.5 116 18-151 17-136 (194)
100 2iwr_A Centaurin gamma 1; ANK 99.6 3.2E-15 1.1E-19 115.9 10.4 112 18-150 6-121 (178)
101 1jwy_B Dynamin A GTPase domain 99.6 1.1E-14 3.7E-19 123.5 14.4 129 18-151 23-212 (315)
102 3i8s_A Ferrous iron transport 99.6 9.1E-15 3.1E-19 121.8 13.5 122 19-151 3-126 (274)
103 3iby_A Ferrous iron transport 99.6 5.2E-15 1.8E-19 122.1 11.8 121 20-151 2-124 (256)
104 1ega_A Protein (GTP-binding pr 99.6 2.3E-15 7.8E-20 127.1 9.8 123 18-151 7-130 (301)
105 4gzl_A RAS-related C3 botulinu 99.6 1.9E-15 6.5E-20 120.2 8.8 118 16-151 27-148 (204)
106 2j1l_A RHO-related GTP-binding 99.6 4.1E-15 1.4E-19 119.2 10.8 116 18-151 33-152 (214)
107 2b6h_A ADP-ribosylation factor 99.6 7.2E-15 2.5E-19 115.8 11.9 117 16-151 26-144 (192)
108 2x77_A ADP-ribosylation factor 99.6 9.7E-15 3.3E-19 114.4 12.0 116 17-151 20-137 (189)
109 2ged_A SR-beta, signal recogni 99.6 2.5E-15 8.6E-20 118.1 8.5 119 17-151 46-170 (193)
110 3cbq_A GTP-binding protein REM 99.6 5.5E-15 1.9E-19 116.8 10.4 123 15-151 19-144 (195)
111 1mh1_A RAC1; GTP-binding, GTPa 99.6 2.7E-15 9.4E-20 116.8 8.4 115 19-151 5-123 (186)
112 3k53_A Ferrous iron transport 99.6 1.7E-14 5.9E-19 119.9 13.7 120 19-150 3-122 (271)
113 2hjg_A GTP-binding protein ENG 99.6 2.7E-15 9.3E-20 132.9 9.2 122 20-151 4-125 (436)
114 1m7b_A RND3/RHOE small GTP-bin 99.6 4.4E-15 1.5E-19 116.0 9.1 118 17-151 5-125 (184)
115 3l0i_B RAS-related protein RAB 99.6 1.4E-16 4.8E-21 126.2 0.5 119 17-151 31-152 (199)
116 2j0v_A RAC-like GTP-binding pr 99.6 5.2E-15 1.8E-19 118.1 9.5 116 18-151 8-127 (212)
117 1f6b_A SAR1; gtpases, N-termin 99.6 7.3E-15 2.5E-19 116.3 10.3 127 17-162 23-152 (198)
118 2wjg_A FEOB, ferrous iron tran 99.6 2.1E-14 7.1E-19 112.2 12.7 121 18-151 6-126 (188)
119 2hjg_A GTP-binding protein ENG 99.6 3.8E-15 1.3E-19 132.0 9.3 127 18-152 174-301 (436)
120 3a1s_A Iron(II) transport prot 99.6 3.8E-14 1.3E-18 117.0 14.7 121 18-151 4-124 (258)
121 2aka_B Dynamin-1; fusion prote 99.6 2.4E-14 8.2E-19 120.3 13.7 130 17-151 24-206 (299)
122 3bwd_D RAC-like GTP-binding pr 99.6 2.3E-15 7.9E-20 116.9 6.7 118 18-151 7-126 (182)
123 1nrj_B SR-beta, signal recogni 99.6 1.6E-14 5.5E-19 115.7 11.6 120 17-151 10-134 (218)
124 2g3y_A GTP-binding protein GEM 99.6 3.9E-14 1.3E-18 113.5 13.7 120 18-151 36-159 (211)
125 3c5c_A RAS-like protein 12; GD 99.6 1.1E-14 3.8E-19 114.2 10.1 119 17-151 19-141 (187)
126 3ihw_A Centg3; RAS, centaurin, 99.6 1.4E-14 4.7E-19 113.5 10.3 147 16-184 17-172 (184)
127 1gwn_A RHO-related GTP-binding 99.6 6.3E-15 2.1E-19 117.5 8.4 118 16-151 25-146 (205)
128 4dcu_A GTP-binding protein ENG 99.6 1E-14 3.5E-19 130.0 10.5 128 17-152 193-321 (456)
129 2fv8_A H6, RHO-related GTP-bin 99.6 1.4E-14 4.7E-19 115.4 9.9 115 19-151 25-143 (207)
130 3geh_A MNME, tRNA modification 99.6 5E-15 1.7E-19 131.7 8.0 121 19-151 224-344 (462)
131 3gj0_A GTP-binding nuclear pro 99.5 2.3E-15 7.8E-20 121.1 4.7 122 15-151 11-133 (221)
132 1xzp_A Probable tRNA modificat 99.5 5.2E-15 1.8E-19 132.1 7.5 119 20-151 244-364 (482)
133 2x2e_A Dynamin-1; nitration, h 99.5 4.1E-13 1.4E-17 115.7 18.3 130 18-151 30-211 (353)
134 2cxx_A Probable GTP-binding pr 99.5 2.4E-14 8.2E-19 111.9 9.6 122 20-151 2-136 (190)
135 3b1v_A Ferrous iron uptake tra 99.5 5.4E-14 1.8E-18 116.9 12.2 118 19-150 3-120 (272)
136 2zej_A Dardarin, leucine-rich 99.5 2.2E-14 7.5E-19 112.1 9.0 117 19-151 2-126 (184)
137 3o47_A ADP-ribosylation factor 99.5 7.6E-14 2.6E-18 119.2 12.6 115 18-151 164-280 (329)
138 3qq5_A Small GTP-binding prote 99.5 2.8E-14 9.5E-19 125.4 9.9 127 15-153 30-156 (423)
139 1lnz_A SPO0B-associated GTP-bi 99.5 1.2E-14 4.2E-19 124.5 6.3 126 20-151 159-288 (342)
140 2qag_A Septin-2, protein NEDD5 99.5 2.1E-13 7.1E-18 117.9 13.7 128 18-151 36-188 (361)
141 3tr5_A RF-3, peptide chain rel 99.5 8.8E-14 3E-18 125.6 11.5 117 18-151 12-148 (528)
142 1s0u_A EIF-2-gamma, translatio 99.5 1.1E-12 3.6E-17 115.3 17.8 120 17-151 6-149 (408)
143 1zun_B Sulfate adenylate trans 99.5 3.8E-13 1.3E-17 119.1 14.8 119 17-151 22-171 (434)
144 1pui_A ENGB, probable GTP-bind 99.5 3.1E-13 1.1E-17 107.5 12.8 125 17-151 24-151 (210)
145 2qpt_A EH domain-containing pr 99.5 4.9E-14 1.7E-18 128.0 9.0 135 17-160 63-239 (550)
146 3lvq_E ARF-GAP with SH3 domain 99.5 1.5E-13 5.3E-18 123.6 12.0 115 18-151 321-437 (497)
147 3j2k_7 ERF3, eukaryotic polype 99.5 3.1E-13 1.1E-17 119.7 13.7 119 17-151 15-169 (439)
148 1mky_A Probable GTP-binding pr 99.5 1.1E-13 3.6E-18 122.8 10.6 126 18-151 179-306 (439)
149 3p26_A Elongation factor 1 alp 99.5 1.5E-13 5.1E-18 123.3 11.6 118 18-151 32-185 (483)
150 2j69_A Bacterial dynamin-like 99.5 7.8E-14 2.7E-18 130.0 9.7 122 18-151 68-244 (695)
151 2qag_C Septin-7; cell cycle, c 99.5 7.6E-13 2.6E-17 116.0 15.4 128 17-151 29-181 (418)
152 1wb1_A Translation elongation 99.5 3.9E-13 1.3E-17 120.4 13.7 116 19-151 19-139 (482)
153 3th5_A RAS-related C3 botulinu 99.2 3.1E-15 1.1E-19 118.8 0.0 118 17-151 28-148 (204)
154 3sop_A Neuronal-specific septi 99.5 9.4E-13 3.2E-17 109.3 14.6 135 20-162 3-163 (270)
155 4a9a_A Ribosome-interacting GT 99.5 2.4E-13 8.1E-18 117.4 11.4 123 19-150 72-195 (376)
156 3r7w_B Gtpase2, GTP-binding pr 99.5 3.6E-13 1.2E-17 113.9 11.4 120 21-151 1-120 (331)
157 2f9l_A RAB11B, member RAS onco 99.5 1E-13 3.5E-18 109.6 7.6 117 19-151 5-124 (199)
158 3sjy_A Translation initiation 99.5 6E-13 2.1E-17 116.7 13.1 120 17-151 6-143 (403)
159 2cjw_A GTP-binding protein GEM 99.5 1.8E-13 6E-18 107.9 8.7 153 18-184 5-164 (192)
160 2h5e_A Peptide chain release f 99.5 6.9E-13 2.4E-17 119.9 13.7 118 18-152 12-149 (529)
161 1kk1_A EIF2gamma; initiation o 99.5 1.2E-12 4E-17 115.1 14.7 120 17-151 8-151 (410)
162 3izq_1 HBS1P, elongation facto 99.5 4.4E-13 1.5E-17 123.1 12.4 119 17-151 165-319 (611)
163 3izy_P Translation initiation 99.4 8.3E-15 2.8E-19 132.0 0.6 116 18-151 3-118 (537)
164 1d2e_A Elongation factor TU (E 99.4 5.8E-13 2E-17 116.6 12.0 117 18-151 2-133 (397)
165 2qtf_A Protein HFLX, GTP-bindi 99.4 1.2E-12 4E-17 113.2 13.6 124 20-151 180-306 (364)
166 2xex_A Elongation factor G; GT 99.4 1.2E-12 4.1E-17 122.0 14.1 119 17-152 8-142 (693)
167 2wkq_A NPH1-1, RAS-related C3 99.4 4.4E-13 1.5E-17 114.0 9.7 116 18-151 154-273 (332)
168 1dar_A EF-G, elongation factor 99.4 1.6E-12 5.6E-17 121.0 14.0 122 14-152 7-144 (691)
169 3vqt_A RF-3, peptide chain rel 99.4 2.2E-12 7.4E-17 117.1 14.3 119 18-153 30-168 (548)
170 3zvr_A Dynamin-1; hydrolase, D 99.4 2.1E-12 7.2E-17 120.2 14.3 129 18-151 50-231 (772)
171 2c78_A Elongation factor TU-A; 99.4 4.1E-13 1.4E-17 117.8 8.8 117 18-151 10-142 (405)
172 1g7s_A Translation initiation 99.4 3.7E-13 1.3E-17 123.0 8.5 116 18-151 4-136 (594)
173 1zo1_I IF2, translation initia 99.4 6.7E-14 2.3E-18 125.2 3.3 115 18-151 3-117 (501)
174 1oix_A RAS-related protein RAB 99.4 6.5E-13 2.2E-17 104.4 8.4 117 19-151 29-148 (191)
175 1f60_A Elongation factor EEF1A 99.4 1.2E-12 4E-17 116.6 10.2 117 19-151 7-159 (458)
176 2rdo_7 EF-G, elongation factor 99.4 5.7E-12 2E-16 117.6 14.8 118 17-151 8-148 (704)
177 1jny_A EF-1-alpha, elongation 99.4 6.8E-13 2.3E-17 117.5 8.2 118 18-151 5-158 (435)
178 2qag_B Septin-6, protein NEDD5 99.4 3.3E-12 1.1E-16 111.7 11.9 125 19-151 42-190 (427)
179 1wxq_A GTP-binding protein; st 99.4 3.6E-12 1.2E-16 111.3 11.6 91 20-116 1-114 (397)
180 2ywe_A GTP-binding protein LEP 99.4 3.2E-12 1.1E-16 116.7 11.6 119 18-152 5-140 (600)
181 3cb4_D GTP-binding protein LEP 99.4 3.4E-12 1.2E-16 116.6 11.8 118 19-152 4-138 (599)
182 2elf_A Protein translation elo 99.4 2.8E-12 9.7E-17 111.0 10.3 103 21-151 23-126 (370)
183 2qnr_A Septin-2, protein NEDD5 99.4 7.5E-12 2.6E-16 105.5 12.5 128 18-151 17-169 (301)
184 3dpu_A RAB family protein; roc 99.3 3.4E-12 1.2E-16 115.8 11.0 119 17-151 39-164 (535)
185 2dy1_A Elongation factor G; tr 99.3 5.6E-12 1.9E-16 117.0 11.6 116 18-150 8-139 (665)
186 3avx_A Elongation factor TS, e 99.3 1.5E-11 5E-16 118.2 13.3 119 17-151 294-426 (1289)
187 1r5b_A Eukaryotic peptide chai 99.3 4.3E-12 1.5E-16 113.3 8.4 119 17-151 41-195 (467)
188 4fn5_A EF-G 1, elongation fact 99.3 2E-11 6.7E-16 114.2 12.9 120 17-152 11-152 (709)
189 1n0u_A EF-2, elongation factor 99.3 8E-12 2.7E-16 118.7 10.1 117 18-150 18-163 (842)
190 3mca_A HBS1, elongation factor 99.3 2.4E-13 8.3E-18 124.5 -0.6 119 17-151 175-329 (592)
191 3j25_A Tetracycline resistance 99.2 5.3E-12 1.8E-16 116.6 6.0 117 20-153 3-135 (638)
192 1udx_A The GTP-binding protein 99.2 5.6E-11 1.9E-15 104.1 12.1 125 20-151 158-283 (416)
193 3c5h_A Glucocorticoid receptor 99.2 2.8E-11 9.4E-16 99.6 5.8 48 103-151 162-212 (255)
194 3szr_A Interferon-induced GTP- 99.1 1.9E-10 6.6E-15 105.7 10.6 128 20-151 46-228 (608)
195 3p32_A Probable GTPase RV1496/ 99.1 2.1E-10 7.3E-15 98.8 9.2 25 17-41 77-101 (355)
196 1jal_A YCHF protein; nucleotid 99.1 7.5E-11 2.5E-15 101.3 5.9 90 20-115 3-108 (363)
197 2ohf_A Protein OLA1, GTP-bindi 99.1 1.4E-10 4.9E-15 100.5 7.4 93 17-115 20-128 (396)
198 1f5n_A Interferon-induced guan 99.1 6.3E-10 2.2E-14 101.2 10.6 109 16-130 35-147 (592)
199 2dby_A GTP-binding protein; GD 99.0 3E-10 1E-14 98.0 7.3 90 20-115 2-111 (368)
200 3h2y_A GTPase family protein; 99.0 6.8E-12 2.3E-16 108.6 -3.1 122 19-151 160-287 (368)
201 2p67_A LAO/AO transport system 99.0 3.7E-10 1.3E-14 96.7 7.5 62 67-151 147-208 (341)
202 2j37_W Signal recognition part 99.0 2.3E-09 7.8E-14 96.0 12.9 122 17-151 99-254 (504)
203 2www_A Methylmalonic aciduria 99.0 2.3E-10 7.7E-15 98.4 6.2 24 18-41 73-96 (349)
204 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.2E-09 4E-14 94.9 8.8 95 16-115 17-127 (392)
205 3ec1_A YQEH GTPase; atnos1, at 99.0 6.1E-12 2.1E-16 108.9 -5.7 122 19-151 162-288 (369)
206 1puj_A YLQF, conserved hypothe 98.9 2.8E-09 9.7E-14 88.8 8.5 66 17-87 118-183 (282)
207 1tq4_A IIGP1, interferon-induc 98.9 1.1E-08 3.8E-13 89.4 11.6 119 19-150 69-188 (413)
208 2qm8_A GTPase/ATPase; G protei 98.9 9.3E-10 3.2E-14 94.1 4.6 25 17-41 53-77 (337)
209 1yrb_A ATP(GTP)binding protein 98.9 4E-09 1.4E-13 86.5 8.1 128 17-151 12-185 (262)
210 1rj9_A FTSY, signal recognitio 98.8 3.7E-08 1.3E-12 82.9 11.5 127 18-151 101-261 (304)
211 3dm5_A SRP54, signal recogniti 98.8 6E-08 2.1E-12 85.2 12.3 122 18-151 99-253 (443)
212 2wsm_A Hydrogenase expression/ 98.7 7.1E-09 2.4E-13 82.8 4.4 25 18-42 29-53 (221)
213 2yhs_A FTSY, cell division pro 98.7 1.7E-08 5.8E-13 89.6 6.4 125 17-151 291-452 (503)
214 3cnl_A YLQF, putative uncharac 98.7 1.1E-08 3.6E-13 84.4 4.7 60 20-84 100-159 (262)
215 2v3c_C SRP54, signal recogniti 98.7 2.1E-08 7.2E-13 88.3 6.2 121 19-151 99-252 (432)
216 3kl4_A SRP54, signal recogniti 98.7 2.6E-08 9E-13 87.4 6.7 124 18-151 96-252 (433)
217 3b9q_A Chloroplast SRP recepto 98.6 7.4E-08 2.5E-12 81.0 8.1 125 17-151 98-260 (302)
218 3e70_C DPA, signal recognition 98.6 2.1E-08 7.3E-13 85.2 4.8 123 17-151 127-282 (328)
219 3ohm_A Guanine nucleotide-bind 98.6 1.3E-07 4.3E-12 80.2 9.5 75 66-151 164-248 (327)
220 2og2_A Putative signal recogni 98.6 8.8E-08 3E-12 82.2 8.2 125 17-151 155-317 (359)
221 4fid_A G protein alpha subunit 98.6 9.3E-07 3.2E-11 75.2 13.8 74 67-151 159-242 (340)
222 1zcb_A G alpha I/13; GTP-bindi 98.6 1.5E-07 5.2E-12 81.0 8.8 73 67-150 199-281 (362)
223 3tif_A Uncharacterized ABC tra 98.5 2.1E-06 7.1E-11 69.5 14.2 30 19-48 31-60 (235)
224 3q5d_A Atlastin-1; G protein, 98.5 3E-07 1E-11 81.0 8.8 110 16-131 64-196 (447)
225 1vpl_A ABC transporter, ATP-bi 98.5 7.1E-07 2.4E-11 73.2 10.2 31 18-48 40-70 (256)
226 2olj_A Amino acid ABC transpor 98.5 4.2E-06 1.4E-10 68.8 14.0 31 18-48 49-79 (263)
227 1ji0_A ABC transporter; ATP bi 98.4 7E-07 2.4E-11 72.5 8.8 30 19-48 32-61 (240)
228 2nq2_C Hypothetical ABC transp 98.4 2.2E-06 7.5E-11 70.1 11.6 30 19-48 31-60 (253)
229 1cip_A Protein (guanine nucleo 98.4 1.3E-06 4.3E-11 75.0 10.3 73 67-150 191-273 (353)
230 1j8m_F SRP54, signal recogniti 98.4 1.5E-06 5E-11 72.9 10.4 123 19-151 98-253 (297)
231 2pcj_A ABC transporter, lipopr 98.4 3.2E-06 1.1E-10 67.9 11.9 30 19-48 30-59 (224)
232 2xxa_A Signal recognition part 98.4 2.8E-06 9.5E-11 74.8 11.7 123 17-151 98-254 (433)
233 2pze_A Cystic fibrosis transme 98.4 3.4E-06 1.2E-10 67.9 11.3 30 19-48 34-63 (229)
234 2px0_A Flagellar biosynthesis 98.4 3.2E-07 1.1E-11 76.9 5.2 122 18-151 104-253 (296)
235 1vma_A Cell division protein F 98.3 2.5E-07 8.4E-12 77.9 4.0 125 17-151 102-263 (306)
236 2qi9_C Vitamin B12 import ATP- 98.3 6.5E-06 2.2E-10 67.1 12.4 28 19-46 26-53 (249)
237 1t9h_A YLOQ, probable GTPase E 98.3 1.4E-07 4.8E-12 79.3 2.3 59 19-82 173-237 (307)
238 3tui_C Methionine import ATP-b 98.3 1.1E-05 3.7E-10 69.2 14.0 31 18-48 53-83 (366)
239 3fvq_A Fe(3+) IONS import ATP- 98.3 4.4E-06 1.5E-10 71.6 10.9 30 19-48 30-59 (359)
240 2ffh_A Protein (FFH); SRP54, s 98.3 1.1E-06 3.8E-11 77.0 7.2 122 18-151 97-251 (425)
241 2xtz_A Guanine nucleotide-bind 98.3 1.8E-06 6.2E-11 74.0 8.3 71 68-151 182-264 (354)
242 3rlf_A Maltose/maltodextrin im 98.3 5.8E-06 2E-10 71.3 11.3 30 19-48 29-58 (381)
243 3nh6_A ATP-binding cassette SU 98.3 1.3E-06 4.3E-11 73.5 6.9 31 18-48 79-109 (306)
244 1z47_A CYSA, putative ABC-tran 98.3 7.2E-06 2.5E-10 70.2 11.4 30 19-48 41-70 (355)
245 2it1_A 362AA long hypothetical 98.3 1.7E-05 5.8E-10 68.1 13.6 30 19-48 29-58 (362)
246 1g29_1 MALK, maltose transport 98.3 1.5E-05 5.2E-10 68.7 13.3 30 19-48 29-58 (372)
247 1v43_A Sugar-binding transport 98.2 4.8E-06 1.6E-10 71.8 9.7 30 19-48 37-66 (372)
248 4ido_A Atlastin-1; GTPase, GTP 98.2 1.2E-05 3.9E-10 70.7 12.2 108 16-130 64-195 (457)
249 2bbs_A Cystic fibrosis transme 98.2 9.8E-06 3.4E-10 67.5 11.0 31 18-48 63-93 (290)
250 3d31_A Sulfate/molybdate ABC t 98.2 1.7E-05 5.8E-10 67.7 12.7 30 19-48 26-55 (348)
251 1oxx_K GLCV, glucose, ABC tran 98.2 9.6E-06 3.3E-10 69.5 11.0 30 19-48 31-60 (353)
252 3ozx_A RNAse L inhibitor; ATP 98.2 3E-06 1E-10 76.6 7.6 32 18-49 24-55 (538)
253 1zu4_A FTSY; GTPase, signal re 98.2 5.1E-06 1.8E-10 70.2 8.4 125 17-151 103-268 (320)
254 2yyz_A Sugar ABC transporter, 98.2 1.5E-05 5.1E-10 68.4 11.4 30 19-48 29-58 (359)
255 2yv5_A YJEQ protein; hydrolase 98.2 2.8E-06 9.4E-11 71.3 6.4 58 19-81 165-228 (302)
256 2rcn_A Probable GTPase ENGC; Y 98.2 1.2E-06 4.2E-11 75.0 4.3 29 20-48 216-245 (358)
257 1yqt_A RNAse L inhibitor; ATP- 98.1 4.4E-06 1.5E-10 75.6 7.8 33 17-49 45-77 (538)
258 2hf9_A Probable hydrogenase ni 98.1 9.3E-07 3.2E-11 70.6 3.0 25 18-42 37-61 (226)
259 3bk7_A ABC transporter ATP-bin 98.1 9E-06 3.1E-10 74.5 9.5 31 19-49 382-412 (607)
260 3b5x_A Lipid A export ATP-bind 98.1 1.1E-05 3.9E-10 73.7 10.0 31 18-48 368-398 (582)
261 1u0l_A Probable GTPase ENGC; p 98.1 2.4E-06 8.1E-11 71.7 4.9 59 19-81 169-233 (301)
262 1ls1_A Signal recognition part 98.1 4.4E-06 1.5E-10 69.9 6.0 122 18-151 97-251 (295)
263 3j16_B RLI1P; ribosome recycli 98.1 1.9E-05 6.4E-10 72.4 10.3 33 17-49 101-133 (608)
264 3j16_B RLI1P; ribosome recycli 98.0 1.7E-05 5.7E-10 72.7 9.7 30 20-49 379-408 (608)
265 1yqt_A RNAse L inhibitor; ATP- 98.0 1.5E-05 5E-10 72.2 8.6 31 19-49 312-342 (538)
266 4a82_A Cystic fibrosis transme 98.0 1.1E-05 3.7E-10 73.8 6.9 31 18-48 366-396 (578)
267 3ozx_A RNAse L inhibitor; ATP 98.0 1.1E-05 3.9E-10 72.8 6.8 30 19-48 294-323 (538)
268 1mv5_A LMRA, multidrug resista 97.9 7.1E-06 2.4E-10 66.6 4.6 31 18-48 27-57 (243)
269 2onk_A Molybdate/tungstate ABC 97.9 5.4E-06 1.8E-10 67.2 3.8 29 20-48 25-53 (240)
270 1b0u_A Histidine permease; ABC 97.9 6E-06 2.1E-10 67.8 4.1 31 18-48 31-61 (262)
271 3qf4_A ABC transporter, ATP-bi 97.9 2E-05 6.9E-10 72.1 7.9 31 18-48 368-398 (587)
272 4g1u_C Hemin import ATP-bindin 97.9 6.7E-06 2.3E-10 67.7 4.2 31 18-48 36-66 (266)
273 1sgw_A Putative ABC transporte 97.9 5.6E-06 1.9E-10 65.9 3.6 30 19-48 35-64 (214)
274 1g6h_A High-affinity branched- 97.9 6.3E-06 2.1E-10 67.5 3.9 31 18-48 32-62 (257)
275 2cbz_A Multidrug resistance-as 97.9 5.8E-06 2E-10 66.9 3.6 31 18-48 30-60 (237)
276 3qf4_B Uncharacterized ABC tra 97.9 1.3E-05 4.6E-10 73.4 6.4 31 18-48 380-410 (598)
277 3gfo_A Cobalt import ATP-bindi 97.9 6.7E-06 2.3E-10 68.0 3.9 30 19-48 34-63 (275)
278 1ye8_A Protein THEP1, hypothet 97.9 4.7E-06 1.6E-10 64.4 2.8 23 21-43 2-24 (178)
279 1s96_A Guanylate kinase, GMP k 97.9 5.1E-06 1.7E-10 66.4 3.0 27 18-44 15-41 (219)
280 3b60_A Lipid A export ATP-bind 97.9 2.4E-05 8.1E-10 71.5 7.7 31 18-48 368-398 (582)
281 2ff7_A Alpha-hemolysin translo 97.9 7.8E-06 2.7E-10 66.6 3.9 30 19-48 35-64 (247)
282 4f4c_A Multidrug resistance pr 97.9 1E-05 3.5E-10 80.5 5.5 31 18-48 1104-1134(1321)
283 2yl4_A ATP-binding cassette SU 97.9 2.1E-05 7.3E-10 72.1 7.2 31 18-48 369-399 (595)
284 2ihy_A ABC transporter, ATP-bi 97.9 8.3E-06 2.8E-10 67.6 4.0 30 19-48 47-76 (279)
285 2yz2_A Putative ABC transporte 97.9 8.7E-06 3E-10 67.0 4.1 30 19-48 33-62 (266)
286 1htw_A HI0065; nucleotide-bind 97.9 8.4E-06 2.9E-10 61.7 3.6 30 18-48 32-61 (158)
287 2ixe_A Antigen peptide transpo 97.9 9E-06 3.1E-10 67.1 4.1 31 18-48 44-74 (271)
288 1lvg_A Guanylate kinase, GMP k 97.9 5.1E-06 1.8E-10 65.2 2.3 24 19-42 4-27 (198)
289 3thx_A DNA mismatch repair pro 97.8 0.0002 7E-09 68.5 13.3 116 19-150 662-787 (934)
290 2pt7_A CAG-ALFA; ATPase, prote 97.8 3.4E-05 1.2E-09 65.5 7.3 26 20-45 172-197 (330)
291 1znw_A Guanylate kinase, GMP k 97.8 7.7E-06 2.6E-10 64.6 3.0 26 18-43 19-44 (207)
292 4f4c_A Multidrug resistance pr 97.8 1.9E-05 6.4E-10 78.7 5.6 31 18-48 443-473 (1321)
293 2pjz_A Hypothetical protein ST 97.8 1.3E-05 4.6E-10 65.8 3.6 28 20-48 31-58 (263)
294 4b4t_J 26S protease regulatory 97.8 0.00019 6.5E-09 62.2 11.0 72 18-115 181-252 (405)
295 3tr0_A Guanylate kinase, GMP k 97.8 1.2E-05 4E-10 63.0 3.1 25 19-43 7-31 (205)
296 4b4t_L 26S protease subunit RP 97.8 0.00021 7.1E-09 62.8 11.3 72 17-114 213-284 (437)
297 2d2e_A SUFC protein; ABC-ATPas 97.8 1.4E-05 4.8E-10 65.2 3.5 24 19-42 29-52 (250)
298 2zu0_C Probable ATP-dependent 97.8 1.6E-05 5.5E-10 65.5 3.8 25 18-42 45-69 (267)
299 3g5u_A MCG1178, multidrug resi 97.8 4.5E-05 1.5E-09 75.8 7.6 31 18-48 415-445 (1284)
300 3jvv_A Twitching mobility prot 97.8 2.7E-05 9.4E-10 66.7 5.4 26 19-44 123-148 (356)
301 2kjq_A DNAA-related protein; s 97.7 7.3E-05 2.5E-09 55.9 7.1 26 18-43 35-60 (149)
302 1zp6_A Hypothetical protein AT 97.7 1.9E-05 6.6E-10 61.1 4.0 25 18-42 8-32 (191)
303 2ghi_A Transport protein; mult 97.7 1.6E-05 5.6E-10 65.1 3.7 27 18-44 45-71 (260)
304 1kgd_A CASK, peripheral plasma 97.7 1.4E-05 4.8E-10 61.6 3.0 25 19-43 5-29 (180)
305 3b85_A Phosphate starvation-in 97.7 6.3E-06 2.2E-10 65.3 1.0 29 20-49 23-51 (208)
306 1z6g_A Guanylate kinase; struc 97.7 1.2E-05 3.9E-10 64.2 2.5 26 18-43 22-47 (218)
307 3a00_A Guanylate kinase, GMP k 97.7 1.1E-05 3.8E-10 62.6 2.3 25 20-44 2-26 (186)
308 4b4t_I 26S protease regulatory 97.7 0.00019 6.4E-09 62.6 9.9 25 18-42 215-239 (437)
309 3c8u_A Fructokinase; YP_612366 97.7 1.5E-05 5.2E-10 62.9 2.9 28 16-43 19-46 (208)
310 4b4t_K 26S protease regulatory 97.7 0.00027 9.2E-09 61.9 10.9 72 17-114 204-275 (428)
311 3lnc_A Guanylate kinase, GMP k 97.7 1.2E-05 4E-10 64.6 1.8 25 19-43 27-52 (231)
312 3asz_A Uridine kinase; cytidin 97.7 2E-05 6.9E-10 62.1 3.0 25 18-42 5-29 (211)
313 3g5u_A MCG1178, multidrug resi 97.6 8.6E-05 3E-09 73.7 7.9 31 18-48 1058-1088(1284)
314 4gp7_A Metallophosphoesterase; 97.6 3.2E-05 1.1E-09 59.1 3.6 22 19-40 9-30 (171)
315 1ewq_A DNA mismatch repair pro 97.6 0.00019 6.5E-09 67.4 9.5 25 19-43 576-600 (765)
316 2iw3_A Elongation factor 3A; a 97.6 0.00012 4E-09 70.2 7.9 25 18-42 460-484 (986)
317 3thx_B DNA mismatch repair pro 97.6 0.00016 5.5E-09 69.1 8.8 124 19-150 673-798 (918)
318 2jeo_A Uridine-cytidine kinase 97.6 2.9E-05 1E-09 62.9 3.2 25 18-42 24-48 (245)
319 3ux8_A Excinuclease ABC, A sub 97.6 0.00011 3.9E-09 68.1 7.5 43 102-147 219-263 (670)
320 2bbw_A Adenylate kinase 4, AK4 97.6 3.6E-05 1.2E-09 62.3 3.6 28 19-46 27-57 (246)
321 1knq_A Gluconate kinase; ALFA/ 97.6 4E-05 1.4E-09 58.5 3.7 25 18-42 7-31 (175)
322 4dzz_A Plasmid partitioning pr 97.6 0.00035 1.2E-08 54.5 9.1 81 68-162 75-155 (206)
323 4e22_A Cytidylate kinase; P-lo 97.6 3.5E-05 1.2E-09 62.8 3.3 29 17-45 25-56 (252)
324 1wb9_A DNA mismatch repair pro 97.6 0.00022 7.5E-09 67.3 9.0 25 18-42 606-630 (800)
325 2eyu_A Twitching motility prot 97.6 3.7E-05 1.3E-09 63.0 3.3 28 17-44 23-50 (261)
326 2i3b_A HCR-ntpase, human cance 97.6 2.8E-05 9.6E-10 60.6 2.3 24 21-44 3-26 (189)
327 2v9p_A Replication protein E1; 97.5 3.6E-05 1.2E-09 64.4 3.0 25 18-42 125-149 (305)
328 3tau_A Guanylate kinase, GMP k 97.5 4.3E-05 1.5E-09 60.3 3.2 26 18-43 7-32 (208)
329 4b4t_M 26S protease regulatory 97.5 0.00025 8.4E-09 62.2 8.3 26 17-42 213-238 (434)
330 4b4t_H 26S protease regulatory 97.5 0.00049 1.7E-08 60.6 10.1 26 17-42 241-266 (467)
331 3ney_A 55 kDa erythrocyte memb 97.5 4.6E-05 1.6E-09 59.7 3.3 26 18-43 18-43 (197)
332 3aez_A Pantothenate kinase; tr 97.5 4.4E-05 1.5E-09 64.3 3.3 29 16-44 87-115 (312)
333 2cvh_A DNA repair and recombin 97.5 0.0009 3.1E-08 52.6 10.7 24 18-41 19-42 (220)
334 2j41_A Guanylate kinase; GMP, 97.5 5.4E-05 1.8E-09 59.2 3.2 25 19-43 6-30 (207)
335 3ux8_A Excinuclease ABC, A sub 97.5 0.00018 6E-09 66.9 7.2 39 106-147 566-605 (670)
336 1sxj_E Activator 1 40 kDa subu 97.5 0.00029 9.8E-09 59.9 7.9 22 21-42 38-59 (354)
337 4eun_A Thermoresistant glucoki 97.5 5.4E-05 1.8E-09 59.3 3.0 25 18-42 28-52 (200)
338 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00076 2.6E-08 54.6 10.0 25 18-42 38-62 (262)
339 3bk7_A ABC transporter ATP-bin 97.5 7.8E-05 2.7E-09 68.3 4.4 33 17-49 115-147 (607)
340 2bdt_A BH3686; alpha-beta prot 97.4 5.9E-05 2E-09 58.4 2.7 22 20-41 3-24 (189)
341 2gza_A Type IV secretion syste 97.4 8.1E-05 2.8E-09 63.9 3.7 28 18-45 174-201 (361)
342 1azs_C GS-alpha; complex (lyas 97.4 0.00023 7.9E-09 61.8 6.3 72 67-151 215-298 (402)
343 3h4m_A Proteasome-activating n 97.4 0.0006 2.1E-08 56.1 8.6 24 19-42 51-74 (285)
344 3gd7_A Fusion complex of cysti 97.4 9.3E-05 3.2E-09 64.1 3.7 27 18-44 46-72 (390)
345 1sq5_A Pantothenate kinase; P- 97.4 9.1E-05 3.1E-09 62.2 3.5 26 17-42 78-103 (308)
346 1kag_A SKI, shikimate kinase I 97.4 6.9E-05 2.4E-09 56.9 2.4 23 20-42 5-27 (173)
347 3uie_A Adenylyl-sulfate kinase 97.4 9.5E-05 3.2E-09 57.9 3.2 25 18-42 24-48 (200)
348 4a74_A DNA repair and recombin 97.4 8.7E-05 3E-09 59.0 3.0 26 18-43 24-49 (231)
349 1lv7_A FTSH; alpha/beta domain 97.3 0.0017 5.8E-08 52.6 10.4 23 20-42 46-68 (257)
350 2ehv_A Hypothetical protein PH 97.3 0.00013 4.4E-09 58.7 3.6 24 17-40 28-51 (251)
351 2qt1_A Nicotinamide riboside k 97.3 0.00021 7.1E-09 56.1 4.7 27 16-42 18-44 (207)
352 2npi_A Protein CLP1; CLP1-PCF1 97.3 6.5E-05 2.2E-09 66.6 1.9 31 18-48 137-167 (460)
353 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.0021 7.3E-08 54.1 11.2 25 18-42 44-68 (322)
354 3b9p_A CG5977-PA, isoform A; A 97.3 0.0019 6.4E-08 53.4 10.6 25 18-42 53-77 (297)
355 2o8b_B DNA mismatch repair pro 97.3 0.0014 4.8E-08 63.5 11.0 24 19-43 789-812 (1022)
356 1ex7_A Guanylate kinase; subst 97.3 5.8E-05 2E-09 58.6 0.9 22 21-42 3-24 (186)
357 3tqc_A Pantothenate kinase; bi 97.3 0.00016 5.3E-09 61.0 3.6 27 16-42 89-115 (321)
358 1lw7_A Transcriptional regulat 97.3 0.00011 3.9E-09 63.0 2.7 28 19-46 170-197 (365)
359 2qor_A Guanylate kinase; phosp 97.3 0.00016 5.4E-09 56.8 3.3 25 18-42 11-35 (204)
360 1jjv_A Dephospho-COA kinase; P 97.2 0.00017 5.9E-09 56.5 3.5 22 20-41 3-24 (206)
361 2vp4_A Deoxynucleoside kinase; 97.2 0.00015 5.2E-09 58.1 3.1 26 17-42 18-43 (230)
362 2ewv_A Twitching motility prot 97.2 0.00016 5.3E-09 62.4 3.1 26 18-43 135-160 (372)
363 2obl_A ESCN; ATPase, hydrolase 97.2 0.00013 4.4E-09 62.3 2.6 27 18-44 70-96 (347)
364 3euj_A Chromosome partition pr 97.2 0.00012 4.3E-09 64.9 2.5 29 20-48 30-58 (483)
365 1cke_A CK, MSSA, protein (cyti 97.2 0.00016 5.4E-09 57.5 2.9 23 20-42 6-28 (227)
366 2if2_A Dephospho-COA kinase; a 97.2 0.00015 5.1E-09 56.7 2.7 22 20-41 2-23 (204)
367 2oap_1 GSPE-2, type II secreti 97.2 0.00016 5.6E-09 64.9 3.2 26 19-44 260-285 (511)
368 3ec2_A DNA replication protein 97.2 0.00012 4E-09 56.2 2.0 25 19-43 38-62 (180)
369 1rz3_A Hypothetical protein rb 97.2 0.0002 6.7E-09 56.1 3.1 26 17-42 20-45 (201)
370 2f1r_A Molybdopterin-guanine d 97.2 7.6E-05 2.6E-09 57.2 0.6 24 20-43 3-26 (171)
371 3kta_A Chromosome segregation 97.2 0.00016 5.6E-09 55.4 2.4 22 21-42 28-49 (182)
372 1p9r_A General secretion pathw 97.1 0.0002 6.8E-09 62.7 3.1 27 18-44 166-192 (418)
373 2iw3_A Elongation factor 3A; a 97.1 0.00015 5.3E-09 69.4 2.3 30 19-48 699-728 (986)
374 3end_A Light-independent proto 97.1 0.0015 5.1E-08 54.4 8.0 77 68-162 156-234 (307)
375 3vaa_A Shikimate kinase, SK; s 97.1 0.00032 1.1E-08 54.7 3.6 25 18-42 24-48 (199)
376 1fnn_A CDC6P, cell division co 97.1 0.0038 1.3E-07 53.3 10.5 22 21-42 46-67 (389)
377 1odf_A YGR205W, hypothetical 3 97.0 0.00038 1.3E-08 57.9 3.8 28 16-43 28-55 (290)
378 1nij_A Hypothetical protein YJ 97.0 0.00029 1E-08 59.3 3.1 25 19-43 4-28 (318)
379 2dpy_A FLII, flagellum-specifi 97.0 0.00025 8.4E-09 62.5 2.5 27 18-44 156-182 (438)
380 1uf9_A TT1252 protein; P-loop, 97.0 0.00046 1.6E-08 53.6 3.8 26 17-42 6-31 (203)
381 2wwf_A Thymidilate kinase, put 97.0 0.00053 1.8E-08 53.7 4.1 25 17-41 8-32 (212)
382 3lw7_A Adenylate kinase relate 97.0 0.00043 1.5E-08 52.2 3.2 20 20-39 2-21 (179)
383 1d2n_A N-ethylmaleimide-sensit 97.0 0.0027 9.1E-08 51.9 8.2 25 18-42 63-87 (272)
384 3t15_A Ribulose bisphosphate c 97.0 0.0015 5.1E-08 54.3 6.7 24 19-42 36-59 (293)
385 1np6_A Molybdopterin-guanine d 97.0 0.00036 1.2E-08 53.5 2.7 23 20-42 7-29 (174)
386 3t61_A Gluconokinase; PSI-biol 97.0 0.00045 1.6E-08 53.9 3.3 23 20-42 19-41 (202)
387 3kb2_A SPBC2 prophage-derived 97.0 0.00045 1.6E-08 52.1 3.2 22 21-42 3-24 (173)
388 1njg_A DNA polymerase III subu 96.9 0.00099 3.4E-08 52.6 5.3 23 20-42 46-68 (250)
389 3cf2_A TER ATPase, transitiona 96.9 0.0031 1.1E-07 59.4 9.3 72 17-114 236-307 (806)
390 2x8a_A Nuclear valosin-contain 96.9 0.00034 1.2E-08 57.7 2.4 21 22-42 47-67 (274)
391 1ly1_A Polynucleotide kinase; 96.9 0.00059 2E-08 51.9 3.6 22 20-41 3-24 (181)
392 3pih_A Uvrabc system protein A 96.9 0.014 4.8E-07 55.8 13.6 40 105-147 827-867 (916)
393 1qhx_A CPT, protein (chloramph 96.9 0.0006 2.1E-08 51.9 3.6 23 20-42 4-26 (178)
394 1y63_A LMAJ004144AAA protein; 96.9 0.0007 2.4E-08 52.1 4.0 24 19-42 10-33 (184)
395 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00069 2.4E-08 50.5 3.8 21 20-40 24-44 (149)
396 3vfd_A Spastin; ATPase, microt 96.9 0.0038 1.3E-07 53.8 9.0 25 18-42 147-171 (389)
397 3cm0_A Adenylate kinase; ATP-b 96.9 0.00058 2E-08 52.4 3.4 23 19-41 4-26 (186)
398 2ce7_A Cell division protein F 96.9 0.0048 1.7E-07 54.8 9.7 23 20-42 50-72 (476)
399 2yvu_A Probable adenylyl-sulfa 96.9 0.00085 2.9E-08 51.6 4.3 26 17-42 11-36 (186)
400 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00053 1.8E-08 54.3 2.9 24 19-42 23-46 (235)
401 3trf_A Shikimate kinase, SK; a 96.8 0.00069 2.4E-08 51.9 3.4 22 20-41 6-27 (185)
402 2pez_A Bifunctional 3'-phospho 96.8 0.00064 2.2E-08 51.9 3.2 25 18-42 4-28 (179)
403 3qf7_A RAD50; ABC-ATPase, ATPa 96.8 0.00058 2E-08 58.7 3.1 20 21-40 25-44 (365)
404 2rhm_A Putative kinase; P-loop 96.8 0.00082 2.8E-08 51.7 3.7 23 19-41 5-27 (193)
405 3lda_A DNA repair protein RAD5 96.8 0.01 3.4E-07 51.6 10.9 23 18-40 177-199 (400)
406 1u0l_A Probable GTPase ENGC; p 96.8 0.0016 5.5E-08 54.3 5.7 100 69-188 63-169 (301)
407 1kht_A Adenylate kinase; phosp 96.8 0.00078 2.7E-08 51.7 3.4 22 20-41 4-25 (192)
408 1cr0_A DNA primase/helicase; R 96.8 0.00062 2.1E-08 56.5 3.0 27 18-44 34-60 (296)
409 1ixz_A ATP-dependent metallopr 96.8 0.00053 1.8E-08 55.5 2.5 22 21-42 51-72 (254)
410 1ukz_A Uridylate kinase; trans 96.8 0.0011 3.8E-08 51.6 4.3 25 17-41 13-37 (203)
411 1qhl_A Protein (cell division 96.8 6.1E-05 2.1E-09 60.4 -3.1 25 21-45 29-53 (227)
412 3n70_A Transport activator; si 96.8 0.0038 1.3E-07 46.0 7.0 23 20-42 25-47 (145)
413 2cdn_A Adenylate kinase; phosp 96.8 0.001 3.4E-08 51.8 3.9 25 17-41 18-42 (201)
414 1gvn_B Zeta; postsegregational 96.8 0.00086 2.9E-08 55.6 3.7 25 17-41 31-55 (287)
415 2jaq_A Deoxyguanosine kinase; 96.8 0.00081 2.8E-08 52.2 3.3 22 21-42 2-23 (205)
416 1aky_A Adenylate kinase; ATP:A 96.8 0.00091 3.1E-08 52.9 3.6 24 18-41 3-26 (220)
417 4aby_A DNA repair protein RECN 96.7 0.00021 7.3E-09 62.2 -0.2 40 106-148 317-356 (415)
418 3l82_B F-box only protein 4; T 96.7 0.0097 3.3E-07 46.9 9.0 59 91-149 113-175 (227)
419 1tev_A UMP-CMP kinase; ploop, 96.7 0.001 3.6E-08 51.1 3.6 23 19-41 3-25 (196)
420 3a8t_A Adenylate isopentenyltr 96.7 0.0022 7.5E-08 54.2 5.8 24 20-43 41-64 (339)
421 1in4_A RUVB, holliday junction 96.7 0.00071 2.4E-08 57.3 2.7 24 20-43 52-75 (334)
422 1nks_A Adenylate kinase; therm 96.7 0.001 3.4E-08 51.1 3.4 23 20-42 2-24 (194)
423 2c95_A Adenylate kinase 1; tra 96.7 0.0011 3.8E-08 51.1 3.6 23 19-41 9-31 (196)
424 3d8b_A Fidgetin-like protein 1 96.7 0.0066 2.3E-07 51.8 8.8 25 18-42 116-140 (357)
425 1xjc_A MOBB protein homolog; s 96.7 0.0011 3.8E-08 50.5 3.4 24 19-42 4-27 (169)
426 3k9g_A PF-32 protein; ssgcid, 96.7 0.0053 1.8E-07 49.9 7.8 77 68-162 144-221 (267)
427 1via_A Shikimate kinase; struc 96.7 0.00088 3E-08 50.9 2.9 22 21-42 6-27 (175)
428 2plr_A DTMP kinase, probable t 96.7 0.0012 4.2E-08 51.5 3.7 23 20-42 5-27 (213)
429 3fb4_A Adenylate kinase; psych 96.7 0.001 3.5E-08 52.3 3.3 21 21-41 2-22 (216)
430 1iy2_A ATP-dependent metallopr 96.7 0.00074 2.5E-08 55.5 2.5 22 21-42 75-96 (278)
431 3nwj_A ATSK2; P loop, shikimat 96.7 0.00075 2.6E-08 54.8 2.5 24 19-42 48-71 (250)
432 2v54_A DTMP kinase, thymidylat 96.6 0.0013 4.4E-08 51.1 3.7 24 19-42 4-27 (204)
433 1svm_A Large T antigen; AAA+ f 96.6 0.00091 3.1E-08 57.6 3.1 25 18-42 168-192 (377)
434 3cwq_A Para family chromosome 96.6 0.0027 9.3E-08 49.9 5.6 77 68-162 67-146 (209)
435 3hr8_A Protein RECA; alpha and 96.6 0.022 7.5E-07 48.6 11.5 25 18-42 60-84 (356)
436 3tlx_A Adenylate kinase 2; str 96.6 0.0014 4.6E-08 53.0 3.8 24 18-41 28-51 (243)
437 3dl0_A Adenylate kinase; phosp 96.6 0.0011 3.9E-08 52.1 3.3 21 21-41 2-22 (216)
438 1zak_A Adenylate kinase; ATP:A 96.6 0.0011 3.8E-08 52.5 3.2 23 19-41 5-27 (222)
439 2ze6_A Isopentenyl transferase 96.6 0.0012 4.2E-08 53.6 3.5 22 21-42 3-24 (253)
440 3iij_A Coilin-interacting nucl 96.6 0.0012 4E-08 50.5 3.1 22 19-40 11-32 (180)
441 2grj_A Dephospho-COA kinase; T 96.6 0.0014 4.7E-08 51.1 3.5 24 18-41 11-34 (192)
442 2chg_A Replication factor C sm 96.6 0.012 4.2E-07 45.5 9.2 22 21-42 40-61 (226)
443 1vht_A Dephospho-COA kinase; s 96.6 0.0015 5.3E-08 51.4 3.9 23 19-41 4-26 (218)
444 2dhr_A FTSH; AAA+ protein, hex 96.6 0.0062 2.1E-07 54.4 8.1 22 21-42 66-87 (499)
445 2p5t_B PEZT; postsegregational 96.6 0.001 3.5E-08 54.0 2.8 27 16-42 29-55 (253)
446 1jr3_A DNA polymerase III subu 96.6 0.0024 8.3E-08 54.3 5.2 23 20-42 39-61 (373)
447 2f6r_A COA synthase, bifunctio 96.6 0.0018 6.1E-08 53.5 4.2 24 17-40 73-96 (281)
448 1zd8_A GTP:AMP phosphotransfer 96.6 0.0014 4.6E-08 52.2 3.4 23 19-41 7-29 (227)
449 1n0w_A DNA repair protein RAD5 96.6 0.0012 3.9E-08 52.8 2.9 25 18-42 23-47 (243)
450 2qp9_X Vacuolar protein sortin 96.6 0.0021 7.1E-08 54.9 4.7 25 18-42 83-107 (355)
451 1nn5_A Similar to deoxythymidy 96.5 0.0016 5.4E-08 51.0 3.6 23 19-41 9-31 (215)
452 2bwj_A Adenylate kinase 5; pho 96.5 0.0015 5.1E-08 50.5 3.4 22 20-41 13-34 (199)
453 3kjh_A CO dehydrogenase/acetyl 96.5 0.0011 3.7E-08 53.2 2.5 65 67-149 130-195 (254)
454 3eie_A Vacuolar protein sortin 96.5 0.0057 1.9E-07 51.3 6.9 25 18-42 50-74 (322)
455 3qks_A DNA double-strand break 96.5 0.002 6.7E-08 50.5 3.8 21 20-40 24-44 (203)
456 1qf9_A UMP/CMP kinase, protein 96.5 0.0023 7.7E-08 49.1 4.0 22 20-41 7-28 (194)
457 2iyv_A Shikimate kinase, SK; t 96.5 0.0014 4.8E-08 50.1 2.8 22 20-41 3-24 (184)
458 1ypw_A Transitional endoplasmi 96.5 0.0061 2.1E-07 57.7 7.7 26 17-42 236-261 (806)
459 2pt5_A Shikimate kinase, SK; a 96.4 0.0018 6.2E-08 48.6 3.3 21 21-41 2-22 (168)
460 1q3t_A Cytidylate kinase; nucl 96.4 0.002 6.8E-08 51.6 3.7 24 18-41 15-38 (236)
461 1m7g_A Adenylylsulfate kinase; 96.4 0.0021 7.1E-08 50.5 3.7 25 18-42 24-48 (211)
462 2zan_A Vacuolar protein sortin 96.4 0.0056 1.9E-07 53.9 6.8 25 18-42 166-190 (444)
463 2v1u_A Cell division control p 96.4 0.016 5.4E-07 49.3 9.4 25 18-42 43-67 (387)
464 1uj2_A Uridine-cytidine kinase 96.4 0.0022 7.4E-08 51.9 3.7 24 18-41 21-44 (252)
465 3r20_A Cytidylate kinase; stru 96.4 0.0021 7.1E-08 51.6 3.4 23 19-41 9-31 (233)
466 1qvr_A CLPB protein; coiled co 96.4 0.0038 1.3E-07 59.5 5.8 23 20-42 192-214 (854)
467 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0023 7.9E-08 52.1 3.7 23 19-41 4-26 (260)
468 3cr8_A Sulfate adenylyltranfer 96.4 0.001 3.5E-08 60.2 1.7 26 18-43 368-393 (552)
469 1e4v_A Adenylate kinase; trans 96.4 0.002 6.8E-08 50.7 3.2 21 21-41 2-22 (214)
470 1e6c_A Shikimate kinase; phosp 96.4 0.0019 6.4E-08 48.8 2.9 22 20-41 3-24 (173)
471 2o5v_A DNA replication and rep 96.3 0.0017 5.7E-08 55.7 2.8 21 21-41 28-48 (359)
472 3qkt_A DNA double-strand break 96.3 0.0024 8.1E-08 54.2 3.8 21 20-40 24-44 (339)
473 1gtv_A TMK, thymidylate kinase 96.3 0.00084 2.9E-08 52.6 0.9 22 21-42 2-23 (214)
474 2pbr_A DTMP kinase, thymidylat 96.3 0.0022 7.5E-08 49.3 3.3 21 21-41 2-22 (195)
475 1w1w_A Structural maintenance 96.3 0.0018 6.1E-08 56.8 3.0 26 19-44 26-51 (430)
476 1nlf_A Regulatory protein REPA 96.3 0.0017 5.9E-08 53.3 2.8 24 18-41 29-52 (279)
477 2vli_A Antibiotic resistance p 96.3 0.0016 5.5E-08 49.6 2.4 23 19-41 5-27 (183)
478 1ak2_A Adenylate kinase isoenz 96.3 0.0026 8.9E-08 50.8 3.7 25 17-41 14-38 (233)
479 2z0h_A DTMP kinase, thymidylat 96.3 0.0023 8E-08 49.3 3.3 22 21-42 2-23 (197)
480 4eaq_A DTMP kinase, thymidylat 96.3 0.003 1E-07 50.5 3.9 25 18-42 25-49 (229)
481 3sr0_A Adenylate kinase; phosp 96.2 0.0027 9.2E-08 50.0 3.3 22 21-42 2-23 (206)
482 3be4_A Adenylate kinase; malar 96.2 0.0024 8.1E-08 50.4 3.0 22 20-41 6-27 (217)
483 2xb4_A Adenylate kinase; ATP-b 96.2 0.0027 9.2E-08 50.4 3.3 21 21-41 2-22 (223)
484 1jbk_A CLPB protein; beta barr 96.2 0.0033 1.1E-07 47.7 3.6 24 19-42 43-66 (195)
485 1zuh_A Shikimate kinase; alpha 96.2 0.003 1E-07 47.5 3.3 23 19-41 7-29 (168)
486 1e69_A Chromosome segregation 96.2 0.0018 6E-08 54.6 2.1 20 21-40 26-45 (322)
487 3hu3_A Transitional endoplasmi 96.2 0.012 4.2E-07 52.4 7.6 25 18-42 237-261 (489)
488 3umf_A Adenylate kinase; rossm 96.2 0.0046 1.6E-07 49.0 4.3 23 20-42 30-52 (217)
489 1r6b_X CLPA protein; AAA+, N-t 96.1 0.0064 2.2E-07 57.1 5.9 25 18-42 206-230 (758)
490 1pzn_A RAD51, DNA repair and r 96.1 0.0028 9.5E-08 54.0 3.0 26 18-43 130-155 (349)
491 3eph_A TRNA isopentenyltransfe 96.1 0.0043 1.5E-07 53.7 4.1 24 19-42 2-25 (409)
492 1tf7_A KAIC; homohexamer, hexa 96.1 0.0026 8.9E-08 57.2 2.8 25 18-42 38-64 (525)
493 3te6_A Regulatory protein SIR3 96.1 0.025 8.6E-07 47.4 8.6 25 18-42 44-68 (318)
494 3cf2_A TER ATPase, transitiona 96.1 0.011 3.6E-07 55.8 6.8 27 17-43 509-535 (806)
495 4fcw_A Chaperone protein CLPB; 96.0 0.0055 1.9E-07 50.8 4.4 25 18-42 46-70 (311)
496 3bos_A Putative DNA replicatio 96.0 0.0044 1.5E-07 49.0 3.6 25 18-42 51-75 (242)
497 2w58_A DNAI, primosome compone 96.0 0.0042 1.4E-07 48.2 3.4 23 20-42 55-77 (202)
498 3pvs_A Replication-associated 96.0 0.043 1.5E-06 48.3 10.2 23 20-42 51-73 (447)
499 3ake_A Cytidylate kinase; CMP 96.0 0.0041 1.4E-07 48.3 3.3 21 21-41 4-24 (208)
500 3foz_A TRNA delta(2)-isopenten 96.0 0.0055 1.9E-07 51.2 4.0 24 19-42 10-33 (316)
No 1
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.94 E-value=9e-26 Score=184.88 Aligned_cols=143 Identities=41% Similarity=0.716 Sum_probs=103.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
....++|+|+|++|+|||||+|+|+|...+..+....++|..+...... +.+..+.||||||+.+..........++..
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSS-WKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEE-ETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEE-eCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 3456899999999999999999999998765554444566666555554 478899999999999887777777788999
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHc
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~ 162 (253)
++..+++++|++|+|+|++ +++..+..++.++.+.++.....|++||+||+|.+. +..+++|+.
T Consensus 105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~--~~~~~~~i~ 168 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLG--DTNLHDYLR 168 (239)
T ss_dssp HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------
T ss_pred HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC--cccHHHHHH
Confidence 9988889999999999998 788888888999988888766679999999999987 555665554
No 2
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.93 E-value=9.1e-25 Score=179.87 Aligned_cols=193 Identities=31% Similarity=0.419 Sum_probs=131.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCc-HHHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-EFVGKEIV 94 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~ 94 (253)
..+.++|+|||.+|+|||||+|+|+|...+.....+.++|..+...... ..+..+.||||||+.+..... +.....+.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRR-WDKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEE-ETTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEE-ECCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 3456899999999999999999999998876655555566666655554 478999999999998655433 33456677
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc-cCeEEEEEeCCCCCCCChhhHHHHH------------
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI-FDYMIVVFTGGDELEDNDETLEDYL------------ 161 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~-~~~~ivv~~k~D~~~~~~~~~~~~~------------ 161 (253)
.++..+.+++|++|+|+|++ +++..+..+++++.+.||..+ ..|++|++||+|... ..+++++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG---GSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC---CCHHHHHhhcccHHHHHHH
Confidence 77777779999999999998 799999999999999988654 357888899998853 2333333
Q ss_pred cccCCchh------------hhhHHHhhhHHHHHHHcCC--CCHHHHHHHHHHHHHhHHHHHHHHH
Q 025391 162 GRECPKPL------------KKGATKLRDQQFEVDSLKG--YSKREISELKEQMHKSYEDQLKRIT 213 (253)
Q Consensus 162 ~~~~~~~l------------~~~~~~~~~~~~~~~~~~g--y~~~~~~~~~~~~~~~~~~~~~~~~ 213 (253)
......+. .....+++.+..++.++++ |++.+++..+.-.....+++.++..
T Consensus 173 ~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 238 (247)
T 3lxw_A 173 AECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPEERLRRVA 238 (247)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHGGGSCHHHHHHHHH
T ss_pred HHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcCChHHHHHHHH
Confidence 21111111 1334577788888888888 8887777664433333344444333
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=3.8e-22 Score=165.24 Aligned_cols=135 Identities=33% Similarity=0.577 Sum_probs=106.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
+..+.++|+|+|++|||||||+|+|+|...+.....+.++|..+...... +.+..+.||||||+.++....+...+.+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGS-WGNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEE-ETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEE-eCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 34456899999999999999999999988665544444455555444444 47889999999999987776666666777
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEe-CCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~-k~D~~~ 151 (253)
.++..+++++|++|+|+|++ +++..+..+++++.+.++.....|.++|+| |+|...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 78878889999999999998 688888888899999888665567788877 999874
No 4
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=3.2e-19 Score=147.90 Aligned_cols=141 Identities=22% Similarity=0.307 Sum_probs=104.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
..++|+++|.+|+|||||+|+|+|........ ..+.|......... ..+..+.+|||||+.++....+...+.+..++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~-~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRT-MGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEE-ETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEE-ECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 45899999999999999999999987533322 22334333333333 47889999999999887655555545555544
Q ss_pred HhhcCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHc
Q 025391 98 GMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~-~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~ 162 (253)
..+++|++|+|++++. +++..+..+++.+...++...+.|+++|+||+|........+++|+.
T Consensus 113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~ 176 (262)
T 3def_A 113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSS 176 (262)
T ss_dssp --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHH
T ss_pred --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHH
Confidence 2357899999988763 57777888999999999887777999999999987544566777776
No 5
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.81 E-value=6.5e-19 Score=146.64 Aligned_cols=141 Identities=23% Similarity=0.344 Sum_probs=101.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
..++|+++|.+|+|||||+|+|+|........ ..+.|..+...... ..+..+.+|||||+.++..........+..++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~-~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRS-RAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEE-ETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEe-eCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 45899999999999999999999987533332 22333333333333 46789999999999876543343333333321
Q ss_pred HhhcCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHc
Q 025391 98 GMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~-~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~ 162 (253)
..+++|++|||++++. +++..+..+++.+...+|...+.|+++|+||+|.....+..+++|+.
T Consensus 116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~ 179 (270)
T 1h65_A 116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFS 179 (270)
T ss_dssp --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHH
T ss_pred --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHH
Confidence 2457899999988864 67777888899998888877667999999999987633446777776
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.77 E-value=1.9e-17 Score=139.86 Aligned_cols=125 Identities=22% Similarity=0.251 Sum_probs=91.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+|+|++|+|||||+|+|+|......... .+.|.... ..+....+..+.+|||||+.++.. .+...+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~-~~tTr~~i-~~i~~~~~~~l~l~DTpG~~~~~~---~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPR-PQTTRKRL-RGILTEGRRQIVFVDTPGLHKPMD---ALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSS-SCCCCSCE-EEEEEETTEEEEEEECCCCCCCCS---HHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCC-CCceeEEE-EEEEEeCCcEEEEecCccccchhh---HHHHHHHHHHH
Confidence 46899999999999999999999876432221 12232222 222334678999999999986432 34455666677
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++..+|++|+|+|++++++..+..+++.+....+ ..|+++|+||+|...
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAK 131 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCS
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC---CCCEEEEEECcccCC
Confidence 77889999999999998888887766666655321 358999999999986
No 7
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.76 E-value=5.2e-18 Score=136.63 Aligned_cols=130 Identities=12% Similarity=0.172 Sum_probs=89.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHH--HHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~--~~~~~~ 94 (253)
...++|+|+|.+|+|||||+|+|++...........+.|............+..+.+|||||+.+....... ....+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 456899999999999999999999986321222233445554444443345678999999998765433321 112222
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+......+|++|+|+|+++.++..+..++.++... ..|+++|+||+|...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT-----GKPIHSLLTKCDKLT 158 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG-----CCCEEEEEECGGGSC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence 2222234568999999999988888888877776652 258999999999986
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.76 E-value=7.1e-18 Score=142.97 Aligned_cols=129 Identities=19% Similarity=0.284 Sum_probs=93.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC-CeEEEEEeCCCCCCCCCCcHHHHHH
Q 025391 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKE 92 (253)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~ 92 (253)
+++++...|+|+|.+|||||||+|+|+|........ ..+.|......... .. +..+.+|||||+.++.. .....+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~-~~~tT~~~~~~~~~-~~~~~~i~lvDTPG~~~~~~-~~~l~~~ 81 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISP-KAGTTRMRVLGVKN-IPNEAQIIFLDTPGIYEPKK-SDVLGHS 81 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEE-ETTTEEEEEEECCCCCCCCT-TCHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCC-CCCceeeEEEEEEe-cCCCCeEEEEECcCCCcccc-chhHHHH
Confidence 445566899999999999999999999987643222 22334333333333 45 88999999999987552 2345566
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
+......++..+|++|+|+|+++..+..+... ++.+.. ...|+++|+||+|..
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence 66666677788899999999998888888665 555544 235899999999998
No 9
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.74 E-value=1e-16 Score=126.25 Aligned_cols=125 Identities=22% Similarity=0.272 Sum_probs=81.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...++|+|+|.+|+|||||+|+|++...........+.|........ +..+.+|||||+.+...... ....+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~l~Dt~G~~~~~~~~~-~~~~~~~~ 95 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII----NDELHFVDVPGYGFAKVSKS-EREAWGRM 95 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE----TTTEEEEECCCBCCCSSCHH-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE----CCcEEEEECCCCCccccCHH-HHHHHHHH
Confidence 35689999999999999999999988632222222333433333221 34789999999876554322 12233333
Q ss_pred HHhh---cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMA---KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~---~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+ ...+|++++|+|++++.+..+..+++++... ..|+++|+||+|...
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIP 148 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 3322 2455999999999988888887777777652 248999999999986
No 10
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.73 E-value=4.9e-17 Score=123.85 Aligned_cols=152 Identities=23% Similarity=0.238 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
++|+++|++|+|||||+|+|++....... ...+.+......... ..+..+.+|||||...... ....+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVE-TDRGRFLLVDTGGLWSGDK----WEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEE-ETTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEE-eCCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence 68999999999999999999987642121 122233333333333 3677899999999876432 11334445556
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHHcccCCchhhhhHHHhhhH
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ 179 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (253)
++..+|++++|+|++++++.....+.+++... ..|+++|+||+|.... .....++.......++..+......+
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-----GKPVILVATKVDDPKH-ELYLGPLYGLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-----TCCEEEEEECCCSGGG-GGGCGGGGGGSSCSCEECBTTTTBSH
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-----CCCEEEEEECcccccc-hHhHHHHHhCCCCCeEEEecccCCCh
Confidence 67888999999999988888777777766652 2479999999999752 22233333222223444444444444
Q ss_pred HHHH
Q 025391 180 QFEV 183 (253)
Q Consensus 180 ~~~~ 183 (253)
++++
T Consensus 150 ~~l~ 153 (161)
T 2dyk_A 150 EELL 153 (161)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 11
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.72 E-value=5.6e-16 Score=125.46 Aligned_cols=134 Identities=17% Similarity=0.130 Sum_probs=81.7
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 025391 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE 92 (253)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 92 (253)
|......++|+|+|.+|+|||||+|+|++...... ...+.|......... ..+..+.+|||||+.+......... .
T Consensus 23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~-~ 98 (228)
T 2qu8_A 23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFD-HKLNKYQIIDTPGLLDRAFENRNTI-E 98 (228)
T ss_dssp CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEE-ETTEEEEEEECTTTTTSCGGGCCHH-H
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeee-cCCCeEEEEECCCCcCcccchhhhH-H
Confidence 44445679999999999999999999999865321 122233333333333 3668899999999975332111110 0
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+......+|++|+|+|++++.+........++..........|+++|+||+|...
T Consensus 99 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 99 -MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp -HHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred -HHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 1222233567799999999987655332223344443322212358999999999975
No 12
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.70 E-value=1.6e-16 Score=123.03 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=85.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...++|+++|.+|+|||||+|+|++........ .+.+.......+. ..+..+.+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~----------- 71 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVT-VNDKKITFLDTPGHEAFTTM----------- 71 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEE-ETTEEEEESCCCSSSSSSCS-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEE-eCCceEEEEECCCCHHHHHH-----------
Confidence 455899999999999999999999876533222 1222222223233 36788999999998764421
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHHHHH
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL 161 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~~~~ 161 (253)
....+..+|++|+|+|+++.........+..+.. ...|+++|+||+|........+...+
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~ 131 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAKA-----ANVPIIVAINKMDKPEANPDRVMQEL 131 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG-----GSCCEEEEEETTTSSCSCHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh-----CCCCEEEEEECccCCcCCHHHHHHHH
Confidence 2245678899999999987776666555544322 23589999999999863333444444
No 13
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.70 E-value=9.2e-16 Score=120.41 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=85.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEI 93 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~ 93 (253)
....++|+|+|.+|+|||||+|+|++....... ...+.|...... ..+..+.+|||||+........ .....+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINFY----LVNSKYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEEE----EETTTEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEEE----EECCcEEEEECCCCccccCChhhHHHHHHH
Confidence 345589999999999999999999998732222 222333333222 1245688999999765433221 112222
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.........++|++++|+|++...+.....+++++... ..|+++|+||+|...
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVK 147 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 23232333567999999999888888887777777664 248999999999986
No 14
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.70 E-value=1.9e-16 Score=122.79 Aligned_cols=127 Identities=22% Similarity=0.183 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+..+|+|+|++|+|||||+|+|++........ ..+.|.......+. .++..+.+|||||+.+.....+. ..+....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~-~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~--~~~~~~~ 78 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIH-IDGMPLHIIDTAGLREASDEVER--IGIERAW 78 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEEE-ETTEEEEEEECCCCSCCSSHHHH--HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeC-CCCceeceeeEEEE-ECCeEEEEEECCCcccchhHHHH--HHHHHHH
Confidence 45799999999999999999999876422211 12233333223333 46778999999999754321110 1122222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++..+|++++|+|++++.+.....++..+..... ...|+++|+||+|...
T Consensus 79 -~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 79 -QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITG 129 (172)
T ss_dssp -HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHC
T ss_pred -HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcc--cCCCEEEEEECccCCc
Confidence 23467899999999987776555556666655432 2358999999999853
No 15
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.70 E-value=2.3e-16 Score=122.34 Aligned_cols=119 Identities=21% Similarity=0.191 Sum_probs=77.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~ 93 (253)
..+.++|+|+|++|+|||||+|+|++....... ..+.+.......+. ..+ ..+.+|||||.....
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~---------- 72 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVE-INGEKVKLQIWDTAGQERFR---------- 72 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CC--TTTBSEEEEEEEEE-ETTEEEEEEEEEETTGGGCS----------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCcc--CCCceeEEEEEEEE-ECCEEEEEEEEcCCCchhhh----------
Confidence 345689999999999999999999987653222 22233333333333 244 578999999975433
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++|+|+|++++.+... ..++..+.... ...|+++|+||+|...
T Consensus 73 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 73 -TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPE 127 (181)
T ss_dssp -SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGG
T ss_pred -hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCch
Confidence 223355678899999999985433333 22334443332 2368999999999764
No 16
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.69 E-value=1.2e-16 Score=122.76 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=74.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
+..+|+++|++|+|||||+|++++...........+.+... ...... ....+.+|||||.... ...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~ 71 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLT--KKLNIGGKRVNLAIWDTAGQERF-----------HAL 71 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEE--EEEESSSCEEEEEEEECCCC-----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEE--EEEEECCEEEEEEEEECCCcHhh-----------hhh
Confidence 44899999999999999999999876432222222222211 122211 2347889999997532 234
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++++|+|++++.+... ..++..+....+. ..|+++|+||+|...
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEK 125 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGG
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECccccc
Confidence 4556788999999999985443333 3344445444332 358999999999864
No 17
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.69 E-value=1.7e-16 Score=124.58 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=79.6
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 025391 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE 92 (253)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 92 (253)
+......++|+|+|.+|+|||||+|+|++...........+.+......... .....+.+|||||......
T Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~-------- 86 (189)
T 2gf9_A 16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRH-DKRIKLQIWDTAGQERYRT-------- 86 (189)
T ss_dssp CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEET-TEEEEEEEEECCSCCSSCC--------
T ss_pred CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEEC-CeEEEEEEEeCCCcHHHhh--------
Confidence 3344456899999999999999999999876533222222222222211111 1245789999999865432
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 87 ---~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 87 ---ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW--DNAQVILVGNKCDLED 141 (189)
T ss_dssp ---SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred ---hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccc
Confidence 23456678899999999985433322 334444444321 2358999999999864
No 18
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.69 E-value=1.7e-16 Score=123.22 Aligned_cols=125 Identities=14% Similarity=0.067 Sum_probs=72.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
..+..+|+++|++|+|||||+|+|++...........+.+...............+.+|||||... +..
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~ 73 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQS 73 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH-----------hhh
Confidence 345689999999999999999999987643222222222222211111101245789999999643 224
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc--ccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g--~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+... ..++..+....+ .....|+++|+||+|...
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 44566788999999999985443332 334444444332 113458999999999863
No 19
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=5e-17 Score=124.69 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=75.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+++|++|+|||||+|+|++...........+.+......... .....+.+|||||..... ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~-----------~~~~ 70 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTIN-EHTVKFEIWDTAGQERFA-----------SLAP 70 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGG-----------GGHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCChhhh-----------hhhh
Confidence 4799999999999999999999876432222222222222222111 123478999999974321 2334
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++..+|++++|+|++++.+... ..++..+....+ ...|+++|+||+|...
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQ 122 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccc
Confidence 45578899999999985443333 333444444332 2358999999999875
No 20
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.69 E-value=1.6e-16 Score=123.01 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=76.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...++|+++|.+|+|||||+|+|++...........+.+......... .....+.+|||||..... ..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~-----------~~ 80 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQKIKLQIWDTAGQERFR-----------AV 80 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEET-TEEEEEEEEECTTGGGTC-----------HH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CeEEEEEEEECCCChHhh-----------hh
Confidence 345899999999999999999999876532222222222222222111 123578999999975432 23
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEA 134 (179)
T ss_dssp HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 3344467799999999985543332 334444444332 2358999999999864
No 21
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.69 E-value=5e-16 Score=129.41 Aligned_cols=134 Identities=20% Similarity=0.263 Sum_probs=80.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCC----CccceeeeeeeeEe-eCC--eEEEEEeCCCCCCCCCCcH---
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSE--- 87 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~----~~~t~~~~~~~~~~-~~~--~~~~liDtpG~~~~~~~~~--- 87 (253)
..++|+|+|.+|+|||||+|+|++...+...... ...|.......... ..+ ..+.+|||||+.++....+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 3489999999999999999999998876554210 01222222222221 133 3899999999976543221
Q ss_pred HHHHHH----HHHHHh---------hcCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 025391 88 FVGKEI----VKCIGM---------AKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (253)
Q Consensus 88 ~~~~~~----~~~~~~---------~~~~~~~~l~v~d~~~-~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~ 153 (253)
.+...+ ...+.. ...++|+++++++++. .+...+..+++.+.. ..|+++|+||+|.+.
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~-- 158 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT-- 158 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC--
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCC--
Confidence 121111 222221 1234789999997653 688888777776654 358999999999986
Q ss_pred hhhHHH
Q 025391 154 DETLED 159 (253)
Q Consensus 154 ~~~~~~ 159 (253)
...+..
T Consensus 159 ~~e~~~ 164 (274)
T 3t5d_A 159 PEECQQ 164 (274)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 22
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.69 E-value=9.1e-17 Score=126.51 Aligned_cols=119 Identities=20% Similarity=0.205 Sum_probs=78.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
...++|+|+|++|+|||||+|+|++........ ...+.......+.. .+ ..+.+|||||.....
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------- 79 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFR----------- 79 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--CCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGC-----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhhh-----------
Confidence 445899999999999999999999876533222 22233333333332 44 578999999975432
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|...
T Consensus 80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTT 135 (196)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTT
T ss_pred hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccccc
Confidence 233445578899999999985433222 3444555444332 358999999999875
No 23
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.69 E-value=1.4e-16 Score=128.30 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+.+||+|||.+|+|||||+++++..........+.+........... .....+.+|||+|...+. ...
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~-~~~v~l~iwDtaGqe~~~-----------~l~ 79 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTIRLQLWDTAGLERFR-----------SLI 79 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECS-SCEEEEEEECCSCTTTCG-----------GGH
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEec-ceEEEEEEEECCCchhhh-----------hHH
Confidence 45799999999999999999998665422222222222212111111 123478899999986543 344
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC---ChhhHHHHHcccCCchhhhhH
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKKGA 173 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~---~~~~~~~~~~~~~~~~l~~~~ 173 (253)
..++.+++++|+|+|++++-+... ..++..+....+.. .|++||.||+|+... .......+.......+++.++
T Consensus 80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SA 157 (216)
T 4dkx_A 80 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSA 157 (216)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBT
T ss_pred HHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeC
Confidence 566788999999999986555444 45556666555443 589999999998641 123444555544455666777
Q ss_pred HHhhhHHHHHH
Q 025391 174 TKLRDQQFEVD 184 (253)
Q Consensus 174 ~~~~~~~~~~~ 184 (253)
+....++++++
T Consensus 158 ktg~nV~e~F~ 168 (216)
T 4dkx_A 158 KAGYNVKQLFR 168 (216)
T ss_dssp TTTBSHHHHHH
T ss_pred CCCcCHHHHHH
Confidence 77777777665
No 24
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.68 E-value=1.4e-16 Score=123.67 Aligned_cols=121 Identities=21% Similarity=0.183 Sum_probs=77.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
....+|+++|.+|+|||||+|+|++.........+.+.+......... .....+.+|||||..... ..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~-----------~~ 77 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYH-----------SL 77 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET-TEEEEEEEEECCCSGGGG-----------GG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCChhhh-----------hh
Confidence 345799999999999999999999876533322222332222222111 123578999999974321 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 78 APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLD 131 (181)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTT
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccc
Confidence 3345577899999999985544332 444444444322 2358999999999975
No 25
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.68 E-value=1.9e-16 Score=123.64 Aligned_cols=119 Identities=15% Similarity=0.116 Sum_probs=78.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
...++|+|+|++|+|||||+|.|++......... ..+.......+. ..+ ..+.+|||||... +.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNH--TIGVEFGSKIIN-VGGKYVKLQIWDTAGQER-----------FR 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCC--CSEEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ccceEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HH
Confidence 4458999999999999999999998764322221 222222222222 233 5789999999743 33
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDA 129 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 455667789999999999985433322 334444444322 2468999999999863
No 26
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.68 E-value=9.7e-17 Score=123.08 Aligned_cols=120 Identities=17% Similarity=0.111 Sum_probs=75.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+..+|+++|++|+|||||+|+|++...........+.+......... ..+..+.+|||||.... ....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~-----------~~~~ 72 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQERY-----------HSLA 72 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGG-----------GGGH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHh-----------hhhh
Confidence 34799999999999999999999765432222222222222222111 12457899999997532 1233
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLAN 125 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence 445578899999999985543332 333444444322 2358999999999864
No 27
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.68 E-value=1.4e-16 Score=122.29 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=77.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+.++|+++|++|+|||||+|+|++...........+.+......... .....+.+|||||..... ...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~-----------~~~ 72 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-NELHKFLIWDTAGLERFR-----------ALA 72 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGG-----------GGT
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-CeEEEEEEEcCCCchhhh-----------ccc
Confidence 34899999999999999999999886433222222323222222111 123578999999984321 223
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTD 125 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGG
T ss_pred HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCcccc
Confidence 345577899999999985544333 344455554322 2358999999999874
No 28
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.6e-16 Score=125.19 Aligned_cols=121 Identities=18% Similarity=0.096 Sum_probs=78.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+.++|+|+|.+|+|||||+|+|++...........+.+......... .....+.+|||||..... ..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~-----------~~ 88 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFH-----------SL 88 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGG-----------GG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhH-----------hh
Confidence 456899999999999999999999876432222223333322222221 134589999999975322 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSD 142 (192)
T ss_dssp THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 3345577899999999985544333 334444444321 2358999999999863
No 29
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.68 E-value=3e-16 Score=124.82 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=77.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
..++|+|+|++|+|||||+|+|++...........+.+. ....+.. .+ ..+.+|||||...+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~l~Dt~G~~~~~~----------- 72 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF--KIKTVEL-DGKTVKLQIWDTAGQERFRT----------- 72 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCE--EEEEEEE-TTEEEEEEEECCTTTTTTTC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee--EEEEEEE-CCEEEEEEEEeCCChHHHHH-----------
Confidence 458999999999999999999998765322222222222 2222222 33 4789999999865432
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+... ..++..+..... ...|++||+||+|...
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKD 127 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTT
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence 23355678899999999985444333 334444444322 2358999999999975
No 30
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=4.1e-16 Score=120.96 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=74.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
.+..+|+++|++|+|||||+|+|++......... ...+......... ..+ ..+.+|||||... +.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~-----------~~ 74 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI-STVGIDFRNKVLD-VDGVKVKLQMWDTAGQER-----------FR 74 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCC-CCCSCEEEEEEEE-ETTEEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcC-CceeeEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HH
Confidence 3458999999999999999999998765322111 1112222111112 233 4789999999743 22
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAH 130 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTS
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCc
Confidence 344556678899999999985443332 344444544432 2358999999999975
No 31
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=123.69 Aligned_cols=120 Identities=18% Similarity=0.139 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
..++|+|+|.+|+|||||+|+|++.........+.+.+......... .....+.+|||||..... ...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~-----------~~~ 91 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTAGLERYR-----------AIT 91 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-TEEEEEEEEEESCCCTTC-----------TTH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCchhhh-----------hhh
Confidence 45899999999999999999999876533322222222222222111 124578999999986543 222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++|+|+|++++.+... ..++..+.... ....|+++|+||+|...
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGG
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCccc
Confidence 344577899999999985433222 23333333321 12468999999999864
No 32
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.67 E-value=3.8e-16 Score=122.51 Aligned_cols=120 Identities=17% Similarity=0.128 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
.+.++|+|+|.+|+|||||+|+|++...........+.+.. ...+.. .+ ..+.+|||||.. .+.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~-~~~~~~~~l~Dt~G~~-----------~~~ 83 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFR--ERAVDI-DGERIKIQLWDTAGQE-----------RFR 83 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEE--EEEEEE-TTEEEEEEEEECCCSH-----------HHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEE--EEEEEE-CCEEEEEEEEECCCch-----------hhh
Confidence 34589999999999999999999977653322222222222 222222 33 578999999963 233
Q ss_pred -HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 -KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 -~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++|+|+|+++..+... ..++..+..... ....|+++|+||+|...
T Consensus 84 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 84 KSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS 141 (189)
T ss_dssp TTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG
T ss_pred hhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 334455678899999999985433322 334444544431 22468999999999864
No 33
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.67 E-value=5.5e-16 Score=119.94 Aligned_cols=119 Identities=18% Similarity=0.079 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
+.++|+++|++|+|||||+|+|++...........+.+ .....+. ..+ ..+.+|||||... +..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~ 71 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE--FLNKDLE-VDGHFVTMQIWDTAGQER-----------FRS 71 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEE--EEEEEEE-ETTEEEEEEEEECCCCGG-----------GHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeee--EEEEEEE-ECCEEEEEEEEeCCCchh-----------hhh
Confidence 45899999999999999999999775422222122222 2122222 233 4789999999642 334
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDEL 150 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~ 150 (253)
....++..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|..
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 55667788999999999985443332 3344445444321 1235899999999986
No 34
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.67 E-value=6.3e-16 Score=122.03 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=85.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC-----------------------------
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------------------- 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------- 68 (253)
..++|+|+|++|+|||||+|+|++.........+.+... ....+.. .+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASF--CTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEE--EEEEEET-TC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCcccccee--EEEEEEe-cCccccccccccccccccccccccccccccc
Confidence 458999999999999999999998865322211111111 1111111 11
Q ss_pred ----------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccccc
Q 025391 69 ----------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIF 137 (253)
Q Consensus 69 ----------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~ 137 (253)
..+.+|||||..... .....++..+|++|+|+|++++.+... ..++..+....+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---- 147 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYA-----------SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---- 147 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCT-----------TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----
T ss_pred cccccCccceeEEEEEECCCcHHHH-----------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----
Confidence 688999999975433 223344567899999999985544333 334444444322
Q ss_pred CeEEEEEeCCCCCCC---ChhhHHHHHcccCCchhhhhHHHhhhHHHHH
Q 025391 138 DYMIVVFTGGDELED---NDETLEDYLGRECPKPLKKGATKLRDQQFEV 183 (253)
Q Consensus 138 ~~~ivv~~k~D~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 183 (253)
.|+++|+||+| ... ....+..+.......++..+......+..++
T Consensus 148 ~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 195 (208)
T 3clv_A 148 YIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIF 195 (208)
T ss_dssp CEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred CcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 68999999999 421 1234444544323333333333334444433
No 35
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.67 E-value=5.8e-16 Score=122.14 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=78.0
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 025391 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (253)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (253)
.+..+.++|+|+|.+|+|||||+|.|++........ ..|.......+. ..+..+.+|||||...+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~---~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~----------- 76 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI---TATVGYNVETFE-KGRVAFTVFDMGGAKKF----------- 76 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CC---CCCSSEEEEEEE-ETTEEEEEEEECCSGGG-----------
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccc---ccccceeEEEEE-eCCEEEEEEECCCCHhH-----------
Confidence 344566899999999999999999999987543111 112223333333 47789999999998532
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc------cccCeEEEEEeCCCCCC
Q 025391 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK------KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~------~~~~~~ivv~~k~D~~~ 151 (253)
......++..+|++|+|+|++++.+... ..++..+...... ....|++||+||+|...
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 2344566789999999999986554433 2222222221100 01468999999999986
No 36
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=3.3e-16 Score=120.32 Aligned_cols=120 Identities=22% Similarity=0.174 Sum_probs=74.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+++|++|+|||||+|+|++.........+.+.+... .... ......+.+|||||..+.. ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~~~Dt~G~~~~~-----------~~~~ 69 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISC-DKSICTLQITDTTGSHQFP-----------AMQR 69 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEE-TTEEEEEEEEECCSCSSCH-----------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE-EEEE-CCEEEEEEEEECCCchhhH-----------HHHH
Confidence 4899999999999999999999875432222222222211 1111 1123468999999986532 2222
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++..+|++++|+|++++.+... ..++..+.+..+.....|+++|+||+|...
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 33345699999999985433332 344555555443223468999999999864
No 37
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.67 E-value=9.6e-16 Score=121.51 Aligned_cols=118 Identities=12% Similarity=0.072 Sum_probs=76.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.++|+|+|++|+|||||+|.|++.........+.+.+... ..+.. .....+.+|||||... +....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~ 74 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKV--KTIYRNDKRIKLQIWDTAGLER-----------YRTIT 74 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEE--EEEEECCeEEEEEEEECCCchh-----------hcchH
Confidence 4899999999999999999999876533222222222222 22221 1245789999999743 22445
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMED 127 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTT
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCc
Confidence 566678899999999985433222 333444444321 2358999999999875
No 38
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.67 E-value=2e-15 Score=117.97 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=79.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+..+|+++|++|+|||||+|++++.. ..... .|.......+. .++..+.+|||||.. ++...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~----~t~~~~~~~~~-~~~~~~~~~Dt~G~~-----------~~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTIS----PTLGFNIKTLE-HRGFKLNIWDVGGQK-----------SLRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCC----CCSSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCccc----ccCccceEEEE-ECCEEEEEEECCCCH-----------hHHHH
Confidence 456999999999999999999999876 22111 12222233333 367899999999973 34445
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
...++.++|++++|+|++++.+... ...++...... ....|+++|+||+|...
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 5667789999999999986655433 22233333221 12468999999999976
No 39
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.66 E-value=7.6e-16 Score=136.60 Aligned_cols=123 Identities=22% Similarity=0.276 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
++|+|||.+|||||||+|.|+|....... ...++|......... +.+..+.+|||||+..... ......+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~~~-~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVE-WYGKTFKLVDTCGVFDNPQ--DIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEE-ETTEEEEEEECTTTTSSGG--GCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEEEE-ECCeEEEEEECCCcccccc--chHHHHHHHHHHH
Confidence 58999999999999999999998643222 234555555555444 5788999999999874321 1112445555666
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++..+|++|+|+|++.+++..+..+..++.+. + .|+++|+||+|...
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-~----~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENLR 124 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSHH
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCcc
Confidence 77899999999999988998887777777653 2 47999999999853
No 40
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.66 E-value=1.3e-15 Score=119.34 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC-----------CeEEEEEeCCCCCCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-----------GQVVNVIDTPGLFDFSAG 85 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~liDtpG~~~~~~~ 85 (253)
...++|+|+|++|+|||||+|+|++.........+.+..... ..... .. ...+.+|||||...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~Dt~G~~~---- 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFRE-KRVVY-RANGPDGAVGRGQRIHLQLWDTAGLER---- 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEEEE-CTTSCCCSSCCCEEEEEEEEEECCSGG----
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeee-EEEEE-ecCCcccccccCcEEEEEEEeCCCcHH----
Confidence 345899999999999999999999865432222222221110 11111 12 34899999999842
Q ss_pred cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+......++..+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|...
T Consensus 83 -------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 83 -------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLED 141 (195)
T ss_dssp -------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGG
T ss_pred -------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 33445666788999999999985444333 344444444321 12468999999999864
No 41
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.66 E-value=2.2e-15 Score=118.46 Aligned_cols=157 Identities=11% Similarity=0.018 Sum_probs=96.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCC------CCccceeeeeeeeE--e--eCCeEEEEEeCCCCCCCCCCc
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTV--L--KDGQVVNVIDTPGLFDFSAGS 86 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~------~~~~t~~~~~~~~~--~--~~~~~~~liDtpG~~~~~~~~ 86 (253)
...++|+|+|.+|+|||||++.|.|......... ....|....+.... . .....+.+|||||...+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--- 88 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN--- 88 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence 3458999999999999999999987654221110 01122222222111 1 123478999999986543
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHH----HHHHHHhcccccCeEEEEEeCCCCCCC-ChhhHHHHH
Q 025391 87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL----HSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYL 161 (253)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l----~~l~~~~g~~~~~~~ivv~~k~D~~~~-~~~~~~~~~ 161 (253)
.....++..+|++|+|+|++++........+ .|+..........|+++|+||+|.... ....+.++.
T Consensus 89 --------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 160 (198)
T 3t1o_A 89 --------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVV 160 (198)
T ss_dssp --------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred --------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHH
Confidence 3444567889999999999855444443333 333332111234689999999998652 134566666
Q ss_pred cccCC-chhhhhHHHhhhHHHHHH
Q 025391 162 GRECP-KPLKKGATKLRDQQFEVD 184 (253)
Q Consensus 162 ~~~~~-~~l~~~~~~~~~~~~~~~ 184 (253)
..... .++..+......++.++.
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~~l~~ 184 (198)
T 3t1o_A 161 DPEGKFPVLEAVATEGKGVFETLK 184 (198)
T ss_dssp CTTCCSCEEECBGGGTBTHHHHHH
T ss_pred HhcCCceEEEEecCCCcCHHHHHH
Confidence 64343 556666666666666555
No 42
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.66 E-value=4.4e-16 Score=122.43 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=74.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
.+..+|+|+|.+|+|||||+|.|++.........+.+.+... ..+. ..+ ..+.+|||||......
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~~~~i~Dt~G~~~~~~---------- 85 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMVN-IDGKQIKLQIWDTAGQESFRS---------- 85 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEE--EEEE-ETTEEEEEEEECCTTGGGTSC----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEE--EEEE-ECCEEEEEEEEECCCchhhhh----------
Confidence 445899999999999999999999876432222222222222 2222 233 4789999999754332
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 86 -~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 86 -ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLES 140 (191)
T ss_dssp -CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred -hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCC
Confidence 12344567899999999985433332 334444444322 2358999999999864
No 43
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=124.60 Aligned_cols=121 Identities=14% Similarity=0.190 Sum_probs=73.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHH
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE 92 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~ 92 (253)
+....++|+|+|.+|+|||||+|+|++.......... .+.......+.. .+ ..+.+|||||...+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~---------- 88 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKST--VGVDFKIKTVEL-RGKKIRLQIWDTAGQERF---------- 88 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CC--TTEEEEEEEEEE-TTEEEEEEEEEECCSGGG----------
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCc--cceeEEEEEEEE-CCeEEEEEEEeCCCcHHH----------
Confidence 3345579999999999999999999987653222222 222222222322 33 47899999996432
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
......++..+|++|+|+|++++.+... ..++..+..... ...|++||+||+|...
T Consensus 89 -~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 89 -NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET 145 (192)
T ss_dssp -HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred -HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 2233344456799999999985544433 334444444322 2358999999999864
No 44
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.65 E-value=2.4e-16 Score=120.95 Aligned_cols=117 Identities=13% Similarity=0.156 Sum_probs=72.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
.++|+++|++|+|||||+|+|++.......... .+............ ...+.+|||||...... ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~~ 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITT--IGIDFKIKTVDINGKKVKLQIWDTAGQERFRT-----------IT 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGGTSC-----------CC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCc--cceeEEEEEEEECCEEEEEEEEeCCCChhhhh-----------hH
Confidence 479999999999999999999987642222111 12222222222211 24789999999754332 12
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
..++..+|++|+|+|++++.+... ..++..+....+ ...|+++|+||+|..
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDME 121 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCC
Confidence 234567899999999985443322 344444544432 235899999999984
No 45
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.65 E-value=1.1e-15 Score=116.93 Aligned_cols=151 Identities=18% Similarity=0.001 Sum_probs=75.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.++|+++|++|+|||||+|++++....... ...+.+.. ..... ......+.+|||||.... .....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~i~D~~g~~~~-----------~~~~~ 67 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTYD-RSIVV-DGEEASLMVYDIWEQDGG-----------RWLPG 67 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE-EEEEE-TTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-CccccceE-EEEEE-CCEEEEEEEEECCCCccc-----------hhhhh
Confidence 479999999999999999999987643222 12222221 11111 112347889999997542 23334
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC---hhhHHHHHcccCCchhhhhHH
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT 174 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~---~~~~~~~~~~~~~~~l~~~~~ 174 (253)
.++..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|..... ......+.......++..+..
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (166)
T 3q72_A 68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA 146 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGG
T ss_pred hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccC
Confidence 55678899999999985443332 23333333321 12346899999999987422 122233333223344444555
Q ss_pred HhhhHHHHHH
Q 025391 175 KLRDQQFEVD 184 (253)
Q Consensus 175 ~~~~~~~~~~ 184 (253)
....++.++.
T Consensus 147 ~~~gi~~l~~ 156 (166)
T 3q72_A 147 LHHNVQALFE 156 (166)
T ss_dssp GTBSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 5555555444
No 46
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.65 E-value=2.3e-16 Score=122.15 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
.+..+|+++|++|+|||||+|.|++.........+.+.. .....+...+ ...+.+|||||...+..
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---------- 71 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLD--FFLRRITLPGNLNVTLQIWDIGGQTIGGK---------- 71 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSS--EEEEEEEETTTEEEEEEEEECTTCCTTCT----------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEE--EEEEEEEeCCCCEEEEEEEECCCCccccc----------
Confidence 345899999999999999999999875422111111211 2122222212 26899999999865432
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~-~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+... ..++..+....... ..+++++|+||+|...
T Consensus 72 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 72 -MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp -THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred -hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 22344577899999999985444332 33444444432111 1234889999999864
No 47
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.3e-15 Score=117.48 Aligned_cols=120 Identities=21% Similarity=0.161 Sum_probs=70.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
+.++|+|+|++|+|||||+|.|++........ +.+.+..... +. ..+ ..+.+|||||..... ...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~~~~D~~g~~~~~---------~~~ 69 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERT--LT-VDGEDTTLVVVDTWEAEKLD---------KSW 69 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEE--EE-ETTEEEEEEEECCC----------------CH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEE--EE-ECCEEEEEEEEecCCCCccc---------hhh
Confidence 45899999999999999999999886533222 2333322222 22 233 478899999985421 112
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|...
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH-QADHVPIILVGNKADLAR 125 (175)
T ss_dssp HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTT
T ss_pred hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhcc
Confidence 23455678899999999985444333 23333343321 112358999999999975
No 48
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=125.69 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=71.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
...++|+|+|.+|+|||||+|.|++...........+.+. ....+. ..+ ..+.+|||||... +.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~~l~l~Dt~G~~~-----------~~ 88 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEF--GSRVVN-VGGKTVKLQIWDTAGQER-----------FR 88 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCE--EEEEEE-ETTEEEEEEEECCTTHHH-----------HS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCccccee--EEEEEE-ECCeeeEEEEEcCCCcHh-----------HH
Confidence 3458999999999999999999998764322221112122 122222 233 5889999999632 22
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 89 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 89 SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDP 144 (200)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGG
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccc
Confidence 223445678899999999985443332 333444444322 2358999999999863
No 49
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=125.15 Aligned_cols=120 Identities=16% Similarity=0.098 Sum_probs=71.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...++|+|+|.+|+|||||+|+|++...........+.+.......+. .....+.+|||||..... ..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~-----------~~ 93 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD-GERTVLQLWDTAGQERFR-----------SI 93 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEET-TEEEEEEEEECTTCTTCH-----------HH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEEC-CEEEEEEEEECCCCcchh-----------hh
Confidence 345899999999999999999999876422222222222222222111 123568999999975431 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
...++..+|++|+|+|++++.+... ..++..+...... ..|++||+||+|..
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccc
Confidence 3334456799999999985444333 3344444443222 35899999999986
No 50
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.65 E-value=3e-15 Score=114.98 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
...+|+++|++|+|||||+|+|++...... ..|.......+. ..+..+.+|||||.... ....
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~~~Dt~G~~~~-----------~~~~ 68 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVT-YKNLKFQVWDLGGLTSI-----------RPYW 68 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEE-ETTEEEEEEEECCCGGG-----------GGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEE-ECCEEEEEEECCCChhh-----------hHHH
Confidence 458999999999999999999987654221 112222233333 36789999999998532 2334
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++|+|+|++++.+... ...++...+.. ....|+++|+||+|...
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 566788999999999986655443 22333333221 13468999999999976
No 51
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.65 E-value=3.3e-16 Score=122.03 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=56.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
...+|+|+|++|+|||||+|.+++........ .+.+.......+. ..+ ..+.+|||||...+ ..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~-----------~~ 72 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFI--STIGIDFKIRTIE-LDGKRIKLQIWDTAGQERF-----------RT 72 (183)
T ss_dssp EEEEEEEECCCCC----------------CHH--HHHCEEEEEEEEE-ETTEEEEEEEEEC-------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CcccceeEEEEEE-ECCEEEEEEEEcCCCChhh-----------hh
Confidence 45899999999999999999999764321111 1112222222222 244 57899999997532 23
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVND 127 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCS
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCc
Confidence 34466688999999999985433322 234444444322 2358999999999874
No 52
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=6.9e-16 Score=122.39 Aligned_cols=121 Identities=21% Similarity=0.185 Sum_probs=73.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+.++|+|+|.+|+|||||+|+|++.........+.+... ....... .....+.+|||||...+.. .
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~~~~-----------~ 88 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLG-KDEFHLHLVDTAGQDEYSI-----------L 88 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCC-----------C
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEEC-CEEEEEEEEECCCccchHH-----------H
Confidence 4568999999999999999999998765322221111111 1111111 2356789999999875442 2
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++|+|+|++++.+... ..++..+....+ ....|+++|+||+|...
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 89 PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSP 143 (201)
T ss_dssp CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGG
T ss_pred HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCcc
Confidence 3355678899999999985433322 222232322211 12358999999999864
No 53
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.65 E-value=1.9e-16 Score=121.29 Aligned_cols=118 Identities=21% Similarity=0.114 Sum_probs=74.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...+|+++|++|+|||||+|+|++.........+.+.... ....... ....+.+|||||...... .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~ 70 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL--ERQIQVNDEDVRLMLWDTAGQEEFDA-----------I 70 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEE--EEEEEETTEEEEEEEECCTTGGGTTC-----------C
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEE--EEEEEECCEEEEEEEEcCCCcHhHHH-----------H
Confidence 4589999999999999999999987543222222222221 1222211 134789999999754332 2
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++++|+|++++.+... ..++..+.... ...|+++|+||+|...
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLD 123 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCc
Confidence 2344567899999999985433222 33444444433 2358999999999864
No 54
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.65 E-value=1.2e-15 Score=121.11 Aligned_cols=121 Identities=22% Similarity=0.172 Sum_probs=56.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC--CCccccCCCCccceeeeeeeeEeeC---CeEEEEEeCCCCCCCCCCcHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR--RAFKSRASSSGVTSTCEMQRTVLKD---GQVVNVIDTPGLFDFSAGSEFVGKE 92 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~--~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~ 92 (253)
...+|+|+|.+|+|||||+|+|++. ........+.+ .......+.... ...+.+|||||. ..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------~~ 85 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSG--VEVVVAPVTIPDTTVSVELFLLDTAGS-----------DL 85 (208)
T ss_dssp EEEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTT-----------HH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccc--eEEEEEEEEECCcccEEEEEEEECCCc-----------HH
Confidence 4479999999999999999999987 32211111111 111222222212 357999999997 34
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCC
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~-~~~~~~ivv~~k~D~~~ 151 (253)
+......++.++|++|+|+|++++.+... ..++..+....+. ....|+++|+||+|...
T Consensus 86 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 86 YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 44566677889999999999985544333 3444445443220 02358999999999875
No 55
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=7.1e-16 Score=121.64 Aligned_cols=119 Identities=23% Similarity=0.202 Sum_probs=75.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
+..+|+|+|.+|+|||||+|+|++.........+.+.+. ....... ...+.+|||||..... .
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~ 71 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY----RQVISCDKSVCTLQITDTTGSHQFP-----------A 71 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE----EEEEEETTEEEEEEEEECCGGGSCH-----------H
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce----eEEEEECCEEEEEEEEeCCChHHhH-----------H
Confidence 458999999999999999999998654322221212111 1111122 3478999999975431 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|...
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 22333455799999999985433332 334555555543323468999999999874
No 56
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.65 E-value=2.9e-15 Score=117.47 Aligned_cols=116 Identities=18% Similarity=0.112 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+.++|+|+|.+|+|||||+|.|++....... ..|....+..+. ..+..+.+|||||.. .+....
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~l~Dt~G~~-----------~~~~~~ 84 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKIT-KGNVTIKLWDIGGQP-----------RFRSMW 84 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTTH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCCCceeEEEEE-eCCEEEEEEECCCCH-----------hHHHHH
Confidence 4589999999999999999999976543211 122222333333 467899999999963 333444
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++|+|+|++++-+... ...++...... ....|+++|+||+|...
T Consensus 85 ~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 85 ERYCRGVSAIVYMVDAADQEKIEA--SKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHccCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 556678899999999985544333 22333333321 13468999999999975
No 57
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.65 E-value=6.9e-16 Score=120.53 Aligned_cols=118 Identities=20% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
+.++|+++|++|+|||||+|+|++......... .+........ ...+. .+.+|||||......
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~---t~~~~~~~~~-~~~~~~~~~~i~Dt~G~~~~~~----------- 67 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDP---TIEDSYRKQV-VIDGETCLLDILDTAGQEEYSA----------- 67 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCT---TCCEEEEEEE-EETTEEEEEEEEECCCC---CT-----------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCC---CchheEEEEE-EECCcEEEEEEEECCCcHHHHH-----------
Confidence 458999999999999999999998764222111 1111111212 22443 477899999765432
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|...
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 68 MRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp THHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSS
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcc
Confidence 22233445799999999985433333 334444444322 23468999999999874
No 58
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.64 E-value=1.4e-15 Score=119.67 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=80.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+..+|+++|++|+|||||++++++...... ..|.......+. .++..+.+|||||..... ..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~-----------~~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELA-IGNIKFTTFDLGGHIQAR-----------RL 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEE-ETTEEEEEEECCCSGGGT-----------TS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEE-ECCEEEEEEECCCCHHHH-----------HH
Confidence 4557999999999999999999998754221 122222233333 367899999999986432 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCC-ChhhHHHHHc
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELED-NDETLEDYLG 162 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~~-~~~~~~~~~~ 162 (253)
...++..+|++++|+|++++.+... ...++...... ....|+++|+||+|.... ....+.+++.
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 150 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDE--ARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALG 150 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred HHHHHhcCCEEEEEEECCChHHHHH--HHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhC
Confidence 3456678899999999986655443 22233333221 134689999999999752 1234444443
No 59
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.64 E-value=8.3e-16 Score=121.50 Aligned_cols=129 Identities=14% Similarity=0.090 Sum_probs=78.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 025391 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (253)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (253)
.+.....+|+|+|.+|||||||++.+++........ ....+.......+.......+.+|||||...+......
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~----- 88 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD----- 88 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGG-GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC-----
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCccee-eeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh-----
Confidence 344566899999999999999999999864322111 11111111111111124468999999998764322100
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++.++|++|+|+|+++++......+..++.+........|+++|+||+|...
T Consensus 89 ---~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 89 ---YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp ---HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred ---cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 0233456799999999987643444555566665422223468999999999875
No 60
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.64 E-value=4.9e-16 Score=123.42 Aligned_cols=156 Identities=11% Similarity=0.073 Sum_probs=89.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
..+..+|+|+|++|+|||||+|+|++........ ...+.......+... ....+.+|||||.....
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------- 71 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ----------- 71 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS-----------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-----------
Confidence 3456899999999999999999999876432221 122222222222221 23578999999975432
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCC--hhhHHHHHc-ccCCch
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN--DETLEDYLG-RECPKP 168 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~~~--~~~~~~~~~-~~~~~~ 168 (253)
.....++..+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|..... ......+.. .....+
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPY 151 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCE
T ss_pred HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceE
Confidence 222345678899999999985433322 3344444443321 1235899999999987321 123333433 122234
Q ss_pred hhhhHHHhhhHHHHHH
Q 025391 169 LKKGATKLRDQQFEVD 184 (253)
Q Consensus 169 l~~~~~~~~~~~~~~~ 184 (253)
+..+......+..+++
T Consensus 152 ~~~Sa~~g~gi~~l~~ 167 (207)
T 1vg8_A 152 FETSAKEAINVEQAFQ 167 (207)
T ss_dssp EECBTTTTBSHHHHHH
T ss_pred EEEeCCCCCCHHHHHH
Confidence 4444444444444443
No 61
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.64 E-value=1.1e-15 Score=118.93 Aligned_cols=118 Identities=20% Similarity=0.209 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
..++|+|+|.+|+|||||+|+|++...........+.+ +.......+ ..+.+|||||...+..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------- 69 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT----FTKLITVNGQEYHLQLVDTAGQDEYSI----------- 69 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE----EEEEEEETTEEEEEEEEECCCCCTTCC-----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCcccc----EEEEEEECCEEEEEEEEeCCCchhhhH-----------
Confidence 35899999999999999999999655322211111111 122222344 4678999999876532
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++++|+|++++-+... ..++..+...+. ....|+++|+||+|...
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTT
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 22345678899999999985433333 233333433322 12358999999999864
No 62
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=7e-16 Score=122.70 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=77.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
..++|+|+|.+|+|||||+|+|++........ ...+.......+. .++ ..+.+|||||... +..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~-----------~~~ 90 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQG--ATIGVDFMIKTVE-INGEKVKLQIWDTAGQER-----------FRS 90 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCC--CCCSEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEE-ECCEEEEEEEEECCCcHH-----------HHH
Confidence 34799999999999999999999775422211 1122222222222 233 4789999999632 334
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAE 145 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence 55677789999999999985433322 334444444322 2358999999999864
No 63
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=3e-16 Score=123.30 Aligned_cols=120 Identities=18% Similarity=0.104 Sum_probs=74.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+.++|+|+|++|+|||||+|+|++...........+.+.......+. .....+.+|||||..... ...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~-----------~~~ 81 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD-GNKAKLAIWDTAGQERFR-----------TLT 81 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECSSGGGC-----------CSH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEEC-CeEEEEEEEeCCCchhhh-----------hhh
Confidence 45899999999999999999999876432222222222222222111 123578999999975432 223
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++|+|+|++++.+... ...++...... ....|+++|+||+|...
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRDTFVK--LDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHT--HHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred HHHhccCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 344577899999999985433222 22333333221 12468999999999853
No 64
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.64 E-value=7.1e-16 Score=122.46 Aligned_cols=151 Identities=12% Similarity=0.040 Sum_probs=86.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
...+|+|+|.+|+|||||+|.|++.........+ .+.......+. .++ ..+.+|||||... +..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~ 93 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGST--IGVDFTMKTLE-IQGKRVKLQIWDTAGQER-----------FRT 93 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEE-ETTEEEEEEEECCTTCGG-----------GHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCC--cceEEEEEEEE-ECCEEEEEEEEECCCcHh-----------HHH
Confidence 3479999999999999999999977542211111 11112122222 233 5889999999743 223
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC---ChhhHHHHHcccCC-chhh
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED---NDETLEDYLGRECP-KPLK 170 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~---~~~~~~~~~~~~~~-~~l~ 170 (253)
....++..+|++|+|+|++++.+... ..++..+....+ ...|++||+||+|.... ....+..+...... .++.
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIE 171 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEE
Confidence 44556678899999999985433322 334444444322 23589999999998641 12234444443222 3444
Q ss_pred hhHHHhhhHHHHHH
Q 025391 171 KGATKLRDQQFEVD 184 (253)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (253)
.+......++.++.
T Consensus 172 ~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 172 TSAKDSSNVEEAFL 185 (201)
T ss_dssp CBTTTTBSHHHHHH
T ss_pred EeCCCCCCHHHHHH
Confidence 44444444444443
No 65
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.64 E-value=1.3e-15 Score=117.97 Aligned_cols=122 Identities=21% Similarity=0.212 Sum_probs=74.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHH
Q 025391 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGK 91 (253)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~ 91 (253)
.+....++|+++|.+|+|||||+|+|++........ .|....+.......+ ..+.+|||||......-
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~------ 73 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD----PTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM------ 73 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCC----TTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC------
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccC----CCcCceEEEEEEECCEEEEEEEEECCCchhhHHH------
Confidence 344566899999999999999999999875422211 122111112222343 47889999998654321
Q ss_pred HHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|...
T Consensus 74 -----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 74 -----REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES 128 (181)
T ss_dssp -----HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGG
T ss_pred -----HHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 1122345689999999985433222 233333323222 12358999999999864
No 66
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.64 E-value=2.5e-15 Score=120.16 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=75.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
..++|+|+|.+|+|||||+++|++........ +.+ .....+.... +..+.+|||||.. .+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~ 69 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT---SIT--DSSAIYKVNNNRGNSLTLIDLPGHE-----------SLRF 69 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC---CCS--CEEEEEECSSTTCCEEEEEECCCCH-----------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC---Ccc--eeeEEEEecCCCccEEEEEECCCCh-----------hHHH
Confidence 45899999999999999999999876422211 111 2222233221 5689999999983 2333
Q ss_pred -HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccCeEEEEEeCCCCCC
Q 025391 96 -CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 -~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g----~~~~~~~ivv~~k~D~~~ 151 (253)
....++.++|++|+|+|+++ +.........++...+. .....|+++|+||+|...
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 70 QLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp HHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred HHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 44555788899999999984 32223333344333321 122468999999999986
No 67
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=2.9e-16 Score=123.49 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=78.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
..++|+|+|.+|+|||||+|+|++...........+.+......... .....+.+|||||. ..+....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~-----------~~~~~~~ 89 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-EKRVKLQIWDTAGQ-----------ERYRTIT 89 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET-TTTEEEEEECHHHH-----------HHCHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCh-----------HHHHHHH
Confidence 45899999999999999999999865422222222222222222221 24568999999995 3344555
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++|+|+|++++-+... ..++..+..... ...|+++|+||+|...
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEE 142 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence 666788899999999985433322 334444544322 2358999999999863
No 68
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.64 E-value=1.7e-15 Score=119.87 Aligned_cols=119 Identities=22% Similarity=0.131 Sum_probs=73.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHH
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE 92 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~ 92 (253)
...+..+|+++|.+|+|||||++.+++.... .... .|....+.......+ ..+.+|||||...+..
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~---~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------- 83 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP-TEYI---PTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK-------- 83 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS--------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCC-CCCC---CcccceeEEEEEECCEEEEEEEEECCCCHHHHH--------
Confidence 3455689999999999999999999987632 2111 111111111122344 3677999999876442
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++.++|++|+|+|++++.+.... .++..+....+ ..|+++|+||+|...
T Consensus 84 ---~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 84 ---LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRE 138 (201)
T ss_dssp ---SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGG
T ss_pred ---HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence 233556788999999999855444432 34555555432 358999999999975
No 69
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.64 E-value=2.2e-16 Score=126.75 Aligned_cols=119 Identities=21% Similarity=0.217 Sum_probs=76.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
..++|+|+|.+|+|||||+|+|++...........+.+..... .....+ ..+.+|||||.......
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~~~l~Dt~G~~~~~~~---------- 77 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVT--FLDDQGNVIKFNVWDTAGQEKKAVL---------- 77 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEE--EEBTTSCEEEEEEEEECSGGGTSCC----------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEE--EEeCCCcEEEEEEEecCCchhhchH----------
Confidence 4589999999999999999999977643222222222222211 111122 57999999997654321
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++|+|+|++++.+..+ ..++..+....+.. .|+++|+||+|...
T Consensus 78 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~ 131 (218)
T 4djt_A 78 -KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKN 131 (218)
T ss_dssp -CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC-
T ss_pred -HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence 1234567899999999986554433 34445555544332 58999999999875
No 70
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.63 E-value=1.6e-15 Score=115.98 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=72.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+|+++|.+|+|||||+|+|++........ .|............ ...+.+|||||...... .
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~ 67 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYD----PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-----------M 67 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCC----CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-----------H
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CCccceEEEEEEECCEEEEEEEEECCChHHHHH-----------H
Confidence 4799999999999999999999865422211 11111111111122 34788999999865431 1
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|...
T Consensus 68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 122 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGG
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccc
Confidence 2223345689999999985433232 334444444322 22468999999999864
No 71
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.63 E-value=2.4e-16 Score=122.03 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=74.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+|+|+|++|+|||||+|+|++........ ...+.......+. ..+ ..+.+|||||..... ..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~-----------~~ 79 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--ATIGIDFLSKTMY-LEDRTVRLQLWDTAGQERFR-----------SL 79 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCC--CCCSEEEEEEEEE-ETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeEEEEEEEE-ECCeEEEEEEEECCCcHHHH-----------HH
Confidence 4899999999999999999999765432221 1222222222222 233 478999999975322 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++|+|+|++++.+... ..++..+....+ ...|+++|+||+|...
T Consensus 80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 80 IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSD 133 (179)
T ss_dssp SHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGG
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccc
Confidence 2334457799999999985433222 334444444332 2358999999999864
No 72
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.63 E-value=1.6e-15 Score=118.24 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=77.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
....+|+++|.+|+|||||+|+|++....... ...+.+ ...+. .++..+.+|||||..... ..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~----~~~~~-~~~~~~~i~Dt~G~~~~~-----------~~ 81 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN----VEEIV-INNTRFLMWDIGGQESLR-----------SS 81 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEE-CCSSSS----CEEEE-ETTEEEEEEEESSSGGGT-----------CG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccC-CcCcee----eEEEE-ECCEEEEEEECCCCHhHH-----------HH
Confidence 35589999999999999999999987652111 122222 12233 367899999999985432 23
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++|+|+|++++.+... ...++...... ....|+++|+||+|...
T Consensus 82 ~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 82 WNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp GGGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 3456688899999999987655443 22333333221 13468999999999975
No 73
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.63 E-value=1.3e-15 Score=116.36 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=72.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
+..+|+++|.+|+|||||+|+|++.........+.+... ..... ..+ ..+.+|||||.... ..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~---~~~~~-~~~~~~~~~l~D~~G~~~~-----------~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY---RKKVV-LDGEEVQIDILDTAGQEDY-----------AA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE---EEEEE-ETTEEEEEEEEECCC---C-----------HH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE---EEEEE-ECCEEEEEEEEECCCcchh-----------HH
Confidence 348999999999999999999998764222111111111 11122 233 47899999997542 12
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|...
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGG
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccc
Confidence 33344456799999999985433332 334444444432 12358999999999864
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.63 E-value=3.5e-15 Score=113.64 Aligned_cols=117 Identities=21% Similarity=0.209 Sum_probs=72.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+|+++|.+|+|||||+|.|++...........+ ........ ..+ ..+.+|||||..... ..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~D~~G~~~~~-----------~~ 67 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE---DSYRKQVV-IDGETCLLDILDTAGQEEYS-----------AM 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC---EEEEEEEE-ETTEEEEEEEEECCCCSSCC-----------HH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc---eEEEEEEE-ECCEEEEEEEEECCCchhhh-----------HH
Confidence 37899999999999999999998754322111111 11111122 233 457899999986543 12
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhh
Confidence 2233345689999999884433222 334444444332 12358999999999875
No 75
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.63 E-value=1.4e-15 Score=119.82 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
....+|+++|.+|+|||||+|+|++........ .|....+.......+ ..+.+|||||...+.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------- 85 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYV----PTVFENFSHVMKYKNEEFILHLWDTAGQEEYD----------- 85 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCC----CCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-----------
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccC----CeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-----------
Confidence 345899999999999999999999876422211 122222222222233 356899999975432
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++.++|++|+|+|++++.+... ..++..+..... ..|+++|+||+|...
T Consensus 86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRK 141 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCC
T ss_pred HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 334566788999999999986544433 344455554322 358999999999874
No 76
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.62 E-value=1.5e-15 Score=121.84 Aligned_cols=118 Identities=13% Similarity=0.052 Sum_probs=77.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
....+|+|+|.+|+|||||++.|++.........+.+... ...+.. .....+.+|||||...+. .
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~ 90 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY---TACLETEEQRVELSLWDTSGSPYYD-----------N 90 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEEC--CEEEEEEEEECCSGGGT-----------T
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE---EEEEEECCEEEEEEEEECCCCHhHH-----------H
Confidence 3458999999999999999999998764322121211111 111111 123578999999975432 3
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++.++|++|+|+|++++.+... ..++..+..... ..|+++|+||+|...
T Consensus 91 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 91 VRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRT 145 (214)
T ss_dssp TGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGG
T ss_pred HHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 34466788999999999986554443 345555555432 358999999999975
No 77
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.62 E-value=5.7e-15 Score=112.74 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+|+++|++|+|||||+|++++...... . .|.......+. ..+..+.+|||||... +......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-~----~t~~~~~~~~~-~~~~~~~i~Dt~G~~~-----------~~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-I----PTIGFNVETVE-YKNISFTVWDVGGQDK-----------IRPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-C----CCSSCCEEEEE-CSSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-c----CcCceeEEEEE-ECCEEEEEEEcCCChh-----------hHHHHHH
Confidence 4899999999999999999987654221 1 12222222333 3678899999999843 2244455
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
++.++|++++|+|++++-+... ...++...... ....|+++|+||+|...
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 6788999999999986544333 22344443321 12468999999999975
No 78
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.62 E-value=1e-14 Score=113.83 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=77.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
....+|+++|++|+|||||++.|++....... .|.......+. .++..+.+|||||... +...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~-----~t~g~~~~~~~-~~~~~l~i~Dt~G~~~-----------~~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQ-SQGFKLNVWDIGGQRK-----------IRPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEE-ETTEEEEEEECSSCGG-----------GHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCccc-----CcCCeEEEEEE-ECCEEEEEEECCCCHH-----------HHHH
Confidence 45689999999999999999999987532111 11111222233 3578899999999743 2234
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++++|+|++++-+... ...++...+.. ....|+++|+||+|...
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 4556678899999999986544433 22333333221 12468999999999975
No 79
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.62 E-value=6.2e-14 Score=121.07 Aligned_cols=127 Identities=18% Similarity=0.107 Sum_probs=83.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
....+|+++|.+|+|||||+|.|+|....... ....|......... ..+..+.+|||||+.+.......... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIAS--YPFTTRGINVGQFE-DGYFRYQIIDTPGLLDRPISERNEIE--KQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEEC--CTTCSSCEEEEEEE-ETTEEEEEEECTTTSSSCSTTSCHHH--HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCeeeceeEEEEE-ecCceEEEEeCCCccccchhhhhHHH--HHH
Confidence 45589999999999999999999998642221 12233333333333 35778999999999764332211111 122
Q ss_pred HHhhcCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~--~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+......+|++|+|+|+++.. +... ..++..+...++ ..|+++|+||+|...
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVAD 294 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCC
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCC
Confidence 333445679999999987543 5544 455666666543 358999999999986
No 80
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=7.1e-16 Score=123.02 Aligned_cols=119 Identities=14% Similarity=0.176 Sum_probs=75.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~ 93 (253)
....++|+|+|++|+|||||+|+|++.......... .+.......+. ..+ ..+.+|||||......
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~--------- 84 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITT--IGIDFKIKTVD-INGKKVKLQLWDTAGQERFRT--------- 84 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCC--CSCCEEEEEEE-ETTEEEEEEEECCTTGGGGTC---------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCc--ccceEEEEEEE-ECCEEEEEEEEeCCCcHHHHH---------
Confidence 345689999999999999999999987643222222 22222222232 244 5789999999754321
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
....++..+|++|+|+|++++.+... ..++..+....+. ..|+++|+||+|..
T Consensus 85 --~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~ 138 (213)
T 3cph_A 85 --ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDME 138 (213)
T ss_dssp --CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCS
T ss_pred --HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCc
Confidence 22344577899999999985433322 3444555444322 35899999999984
No 81
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.62 E-value=1.6e-15 Score=120.39 Aligned_cols=123 Identities=17% Similarity=0.102 Sum_probs=77.5
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHH
Q 025391 11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEF 88 (253)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~ 88 (253)
...+.....++|+++|.+|+|||||++++++...........+.... ..+. ..+ ..+.+|||||.....
T Consensus 17 ~~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~-~~~~~~~l~i~Dt~G~~~~~----- 87 (201)
T 2gco_A 17 RGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI---ADIE-VDGKQVELALWDTAGQEDYD----- 87 (201)
T ss_dssp -----CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE---EEEE-ETTEEEEEEEECCCCSGGGT-----
T ss_pred CCCCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE---EEEE-ECCEEEEEEEEECCCchhHH-----
Confidence 33445556689999999999999999999987653222111111111 1122 233 478999999975432
Q ss_pred HHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++|+|+|++++.+... ..++..+..... ..|+++|+||+|...
T Consensus 88 ------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 88 ------RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQ 143 (201)
T ss_dssp ------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTT
T ss_pred ------HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhc
Confidence 233456788899999999985433333 234455554322 358999999999986
No 82
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.62 E-value=7.6e-15 Score=116.30 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=74.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
.+.++|+|+|.+|+|||||+|.|++.........+.+. .....+. ..+ ..+.+|||||.....
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~---~~~~~~~-~~~~~~~~~l~Dt~G~~~~~----------- 76 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---SYRKKVV-LDGEEVQIDILDTAGQEDYA----------- 76 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCE---EEEEEEE-ETTEEEEEEEEECCCTTCCH-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce---EEEEEEE-ECCEEEEEEEEcCCChhhhH-----------
Confidence 34589999999999999999999987642221111111 1112222 233 378999999976532
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++++|+|+++..+... ..++..+..... ....|++||+||+|...
T Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 77 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 133 (206)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGG
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccc
Confidence 222333456799999999985433322 334444444332 12468999999999864
No 83
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.62 E-value=5.9e-15 Score=127.60 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=81.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCc--cce---------------------------------------
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG--VTS--------------------------------------- 56 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~--~t~--------------------------------------- 56 (253)
.-++|+|||++|||||||+|+|+|...++.+..... .+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 346999999999999999999999775433321110 000
Q ss_pred -----------eeeeeeeEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHH
Q 025391 57 -----------TCEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA 123 (253)
Q Consensus 57 -----------~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~ 123 (253)
......+.......+++|||||+...... .......+...+..++.++|++|+|+++. ..+.....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHH
Confidence 00000111123457899999999875321 22344566666777778999999998765 22222233
Q ss_pred HHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 124 ALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 124 ~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
++..+..... ...|+++|+||+|....
T Consensus 192 ~~~l~~~~~~--~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 192 AIKISREVDP--SGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHSCT--TCTTEEEEEECGGGCCT
T ss_pred HHHHHHHhcc--cCCCEEEEEeCCccCCC
Confidence 4444444321 23579999999999863
No 84
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.62 E-value=2.4e-15 Score=134.15 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=66.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+|+|++|+|||||+|+|++........ ..++|.......+. .++..+.+|||||+.++....+ ........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~-~~gtT~d~~~~~i~-~~g~~l~liDT~G~~~~~~~ve---~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSH-MPGTTRDYIEECFI-HDKTMFRLTDTAGLREAGEEIE---HEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEE-ETTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEE-ECCeEEEEEECCCCCcchhHHH---HHHHHHHH
Confidence 4789999999999999999999985422221 22344444334344 4788999999999975332111 11112234
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~-~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
.++..+|++|+|+|++++.+.... ....++.. +. ..|+++|+||+|....
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~---~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAA-HP---AAKFLTVANKLDRAAN 358 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CT---TSEEEEEEECTTSCTT
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cC---CCCEEEEEECcCCCCc
Confidence 456889999999999977776321 12222222 22 3589999999999863
No 85
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.62 E-value=1.8e-15 Score=117.85 Aligned_cols=124 Identities=23% Similarity=0.203 Sum_probs=74.6
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCe--EEEEEeCCCCCCCCCCcHHH
Q 025391 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFV 89 (253)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~ 89 (253)
+++...+.++|+|+|++|+|||||+|+|++......... +....+.......+. .+.+|||||......
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----- 81 (183)
T 3kkq_A 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDP----TIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA----- 81 (183)
T ss_dssp ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCT----TCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-----
T ss_pred CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----CccceeEEEEEeCCcEEEEEEEECCCchhhHH-----
Confidence 344555678999999999999999999997644222211 111111222223444 466799999754332
Q ss_pred HHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|...
T Consensus 82 ------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 82 ------MREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMH 137 (183)
T ss_dssp ------SHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCST
T ss_pred ------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchh
Confidence 12233345699999999985433322 334444444322 22358999999999864
No 86
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.62 E-value=4e-15 Score=116.63 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=70.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
+..+|+++|.+|+|||||+|.|++......... .+.......+. ..+ ..+.+|||||.... ..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~---t~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~-----------~~ 84 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP---TIEDSYRKQVV-IDGETCLLDILDTAGQEEY-----------SA 84 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCT---TCCEEEEEEEE-ETTEEEEEEEEECCC-----------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCC---ccceEEEEEEE-ECCEEEEEEEEECCChHHH-----------HH
Confidence 347999999999999999999998754221111 11111111222 233 45889999997532 23
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++++|+|+++..+..+ ..++..+..... ....|+++|+||+|...
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCc
Confidence 44556678899999999985443333 333444444322 12358999999999874
No 87
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.62 E-value=7.4e-16 Score=137.30 Aligned_cols=123 Identities=22% Similarity=0.180 Sum_probs=82.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.++|+|||.+|+|||||+|+|+|...... ....+.|......... +.+..+.+|||||+..... ....++.....
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~-~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~ 97 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAE-WLNYDFNLIDTGGIDIGDE---PFLAQIRQQAE 97 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECT-TCSSCCEEECCCC---------CCHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEE-ECCceEEEEECCCCCCcch---HHHHHHHHHHH
Confidence 47999999999999999999999765322 2234556555555444 4678999999999874322 22356666666
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++..+|++|+|+|....++..+..+.+++.+ ...|+++|+||+|...
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----
T ss_pred hhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchh
Confidence 67778899999999988899998877777654 2358999999999874
No 88
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.62 E-value=3.3e-15 Score=119.67 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=74.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeee--eeeEeeC-----------CeEEEEEeCCCCCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKD-----------GQVVNVIDTPGLFDFSA 84 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~-----------~~~~~liDtpG~~~~~~ 84 (253)
..++|+|+|.+|+|||||+|+|++...... ...|....+ ..+.... ...+.+|||||.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~----- 94 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ----- 94 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc-----
Confidence 347999999999999999999998754211 111221111 1122111 357999999995
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCC
Q 025391 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~ 151 (253)
..+......++..+|++|+|+|+++..+... ...++....... ...|++||+||+|...
T Consensus 95 ------~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 95 ------ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp ------HHHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred ------HhHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 3444555666788899999999984333222 223444332211 2468999999999864
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=117.99 Aligned_cols=121 Identities=14% Similarity=0.068 Sum_probs=77.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
..+.++|+|+|.+|+|||||+|+|++...+.... ..|.......+. ..+..+.+|||||..... .
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~-----------~ 82 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFK-SSSLSFTVFDMSGQGRYR-----------N 82 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEE-CSSCEEEEEEECCSTTTG-----------G
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEE-ECCEEEEEEECCCCHHHH-----------H
Confidence 3456899999999999999999999886322221 123223333333 357899999999976532 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~-~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|...
T Consensus 83 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 83 LWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp GGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 33455678899999999985433222 2233333222110 02468999999999975
No 90
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.62 E-value=4.2e-15 Score=125.80 Aligned_cols=125 Identities=19% Similarity=0.178 Sum_probs=83.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH-HHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI-VKCI 97 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~-~~~~ 97 (253)
..+|+|+|.+|+|||||+|.+++....... ...+.|...........++..+.+|||||...+ ...+ ....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~ 74 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-------MENYFTKQK 74 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-------HHHHHTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHHH-------hhhhhhhHH
Confidence 479999999999999999999887432221 123445555555444335778999999997421 1111 2334
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~-~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++.++|++|+|+|++++.+..+. .+..++..........|+++|+||+|...
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 4556789999999999966665553 34444544432222368999999999975
No 91
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.62 E-value=6.7e-15 Score=113.04 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=72.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+|+|++|+|||||+|+|+|...+.... .+.|.......+. ..+..+.+|||||+..+..... .+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~--~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFE-YNGEKFKVVDLPGVYSLTANSI--DEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEE-ETTEEEEEEECCCCSCSSSSSH--HHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCC--CCcceeeeEEEEE-ECCcEEEEEECCCcccCCCcch--hHHHHHHHH
Confidence 3799999999999999999999975432211 1223333333333 3578899999999987543221 122222211
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
. ..++|++++|+|+++ .. ....++..+.+ ...|+++|+||+|..
T Consensus 78 ~-~~~~~~~i~v~D~~~-~~-~~~~~~~~~~~-----~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 78 I-NEKPDLVVNIVDATA-LE-RNLYLTLQLME-----MGANLLLALNKMDLA 121 (165)
T ss_dssp H-HHCCSEEEEEEETTC-HH-HHHHHHHHHHH-----TTCCEEEEEECHHHH
T ss_pred h-cCCCCEEEEEecCCc-hh-HhHHHHHHHHh-----cCCCEEEEEEchHhc
Confidence 1 136799999999974 21 12223333332 135899999999975
No 92
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.61 E-value=3.1e-15 Score=114.15 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=72.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+|+++|++|+|||||+|++++.........+.+ ........ ..+ ..+.+|||||..... ..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~l~D~~G~~~~~-----------~~ 67 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE---DFYRKEIE-VDSSPSVLEILDTAGTEQFA-----------SM 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC---EEEEEEEE-ETTEEEEEEEEECCCTTCCH-----------HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc---eeEEEEEE-ECCEEEEEEEEECCCchhhH-----------HH
Confidence 47999999999999999999997654322211111 11112222 233 358899999975431 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccc
Confidence 2233455689999999985433322 333444444322 12468999999999864
No 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.3e-14 Score=113.58 Aligned_cols=116 Identities=15% Similarity=0.138 Sum_probs=75.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+..+|+++|.+|+|||||+|+|++....... .+.+ .....+. .++..+.+|||||..... ..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~----~~~~~~~-~~~~~~~i~Dt~G~~~~~-----------~~ 76 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG----SNVEEIV-INNTRFLMWDIGGQESLR-----------SS 76 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSC----SSCEEEE-ETTEEEEEEECCC----C-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCc-CCCc----cceEEEE-ECCEEEEEEECCCCHhHH-----------HH
Confidence 34589999999999999999999976653221 1112 1122233 367899999999985432 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
...++.++|++|+|+|++++-+... ...++...... ....|+++|+||+|...
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 2344578899999999986655444 22233333221 13468999999999975
No 94
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.61 E-value=2.7e-15 Score=116.79 Aligned_cols=118 Identities=19% Similarity=0.167 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
+.++|+|+|++|+|||||+|+|++.........+.+ ........ ..+ ..+.+|||||..... .
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~-----------~ 81 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVV-LDGEEVQIDILDTAGQEDYA-----------A 81 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCC---EEEEEEEE-ETTEEEEEEEEECCCTTCCH-----------H
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccc---eEEEEEEE-ECCEEEEEEEEECCCCcccH-----------H
Confidence 458999999999999999999998764222111111 11111122 233 478999999976431 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|...
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 137 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGG
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 22333456799999999985433222 334444444432 12358999999999864
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.61 E-value=3.7e-15 Score=115.95 Aligned_cols=127 Identities=15% Similarity=0.143 Sum_probs=79.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+..+|+++|++|+|||||+|++++....... .+.+ .....+. ..+..+.+|||||...... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~t~~----~~~~~~~-~~~~~~~i~Dt~G~~~~~~-----------~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG----FNVETLS-YKNLKLNVWDLGGQTSIRP-----------Y 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-SSTT----CCEEEEE-ETTEEEEEEEEC----CCT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccC-CcCc----cceEEEE-ECCEEEEEEECCCCHhHHH-----------H
Confidence 45689999999999999999999976542221 1112 1122233 3578999999999865432 2
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCC-hhhHHHHHc
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN-DETLEDYLG 162 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~~~-~~~~~~~~~ 162 (253)
...++..+|++++|+|++++.+... ...++...... ....|+++|+||+|..... ...+.+++.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~ 145 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELN 145 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhC
Confidence 3455678899999999986655443 23344444322 2346899999999987521 234444443
No 96
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.2e-15 Score=123.16 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=74.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
...++|+|+|++|+|||||+|.|++.........+.+.+... ..+. ..+ ..+.+|||||...+.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~~~~i~Dt~G~~~~~----------- 76 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFAT--RTLE-IEGKRIKAQIWDTAGQERYR----------- 76 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEE--EEEE-ETTEEEEEEEECCTTTTTTT-----------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEE--EEEE-ECCEEEEEEEEECCCccchh-----------
Confidence 345899999999999999999999876532222222222221 2222 233 578999999976543
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++|+|+|++++.+... ..++..+..... ...|++||+||+|...
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAH 132 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 223456678899999999985544333 333444444322 2358999999999864
No 97
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.61 E-value=2.3e-15 Score=115.48 Aligned_cols=152 Identities=20% Similarity=0.098 Sum_probs=79.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.++|+++|++|+|||||+|+|++.........+. +.......+. ..+ ..+.+|||||...... ..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~----------~~ 68 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMEN--SEDTYERRIM-VDKEEVTLIVYDIWEQGDAGG----------WL 68 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEE-ETTEEEEEEEECCCCC-----------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCC--cCCeeeEEEE-ECCeEEEEEEEECCCccccch----------hh
Confidence 3799999999999999999999765422222221 2222222222 233 4678999999865321 01
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC---hhhHHHHHcccCCchhhhh
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~---~~~~~~~~~~~~~~~l~~~ 172 (253)
...++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|..... ......+.......++..+
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (169)
T 3q85_A 69 QDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETS 147 (169)
T ss_dssp -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred hhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEec
Confidence 1222345699999999985433222 233333333321 1246899999999986311 2233334433333444444
Q ss_pred HHHhhhHHHHHH
Q 025391 173 ATKLRDQQFEVD 184 (253)
Q Consensus 173 ~~~~~~~~~~~~ 184 (253)
......+.+++.
T Consensus 148 a~~~~~v~~l~~ 159 (169)
T 3q85_A 148 AALHHNTRELFE 159 (169)
T ss_dssp TTTTBSHHHHHH
T ss_pred CccCCCHHHHHH
Confidence 444444444443
No 98
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=2.8e-15 Score=118.29 Aligned_cols=127 Identities=20% Similarity=0.140 Sum_probs=73.7
Q ss_pred CCCCCCCCC-CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCC
Q 025391 8 DDWELTSPS-NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSA 84 (253)
Q Consensus 8 ~~~~~~~~~-~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~ 84 (253)
.+|++.+.. .+..+|+|+|.+|+|||||+|+|++.........+.+ ..+....... ...+.+|||||... .
T Consensus 16 ~~~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~l~Dt~G~~~-~- 89 (196)
T 2atv_A 16 ENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE----STYRHQATIDDEVVSMEILDTAGQED-T- 89 (196)
T ss_dssp -----------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC----EEEEEEEEETTEEEEEEEEECCCCCC-C-
T ss_pred cccchhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCC----ceEEEEEEECCEEEEEEEEECCCCCc-c-
Confidence 456665543 4568999999999999999999998764322111111 1111111123 35689999999865 1
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|...
T Consensus 90 ----------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 90 ----------IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDH 146 (196)
T ss_dssp ----------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGG
T ss_pred ----------cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECccccc
Confidence 122233345689999999985433322 334444544322 22458999999999864
No 99
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=4.7e-15 Score=116.66 Aligned_cols=116 Identities=17% Similarity=0.076 Sum_probs=76.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
...+|+++|.+|+|||||++.|++.........+.+... ...+. ..+ ..+.+|||||...+. .
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~---~~~~~-~~~~~~~~~i~D~~G~~~~~-----------~ 81 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY---AVSVT-VGGKQYLLGLYDTAGQEDYD-----------R 81 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE---EEEEE-SSSCEEEEEEECCCCSSSST-----------T
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee---EEEEE-ECCEEEEEEEEECCCCcchh-----------H
Confidence 457999999999999999999998753221111111111 11122 233 578899999987543 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+... ..++..+....+ ..|+++|+||+|...
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRD 136 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTT
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 23456788999999999985543333 245555555432 358999999999986
No 100
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.61 E-value=3.2e-15 Score=115.87 Aligned_cols=112 Identities=20% Similarity=0.127 Sum_probs=72.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
+..+|+++|.+|+|||||++.+++..... ...+.+ ... ...+. ..+ ..+.+|||||...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~--~~~~~-~~~~~~~l~i~Dt~G~~~-------------- 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQY--KKEML-VDGQTHLVLIREEAGAPD-------------- 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEE--EEEEE-ETTEEEEEEEEECSSSCC--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeE--EEEEE-ECCEEEEEEEEECCCCch--------------
Confidence 45899999999999999999999876532 111111 111 11122 233 4688999999753
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccCeEEEEEeCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDEL 150 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~-~~~~~ivv~~k~D~~ 150 (253)
..++.++|++|+|+|++++.+... ..++.++....... ...|+++|+||+|..
T Consensus 67 --~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 67 --AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred --hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 122345699999999986554444 33444555543211 246899999999984
No 101
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.61 E-value=1.1e-14 Score=123.45 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCC--CCcc----ceee---------------------------------
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--SSGV----TSTC--------------------------------- 58 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~--~~~~----t~~~--------------------------------- 58 (253)
..++|+|+|.+|+|||||+|+|+|....+.+.. +... +...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 447999999999999999999999876333211 0000 0000
Q ss_pred ------------------eeeeeEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCCccEEEEEEeC-CCCC
Q 025391 59 ------------------EMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRF 117 (253)
Q Consensus 59 ------------------~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~d~-~~~~ 117 (253)
....+....+..+.+|||||+.+.... .......+......++..+|++++|+++ +..+
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 000011123467999999999752211 1112244555566666788999999987 4344
Q ss_pred CHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 118 SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 118 ~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+ ..+++++.. ...|+++|+||+|...
T Consensus 183 ~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 183 ANSDALQLAKEVDP-----EGKRTIGVITKLDLMD 212 (315)
T ss_dssp TTCSHHHHHHHHCS-----SCSSEEEEEECTTSSC
T ss_pred hhhHHHHHHHHhCC-----CCCcEEEEEcCcccCC
Confidence 4333 244444332 2358999999999986
No 102
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.60 E-value=9.1e-15 Score=121.81 Aligned_cols=122 Identities=20% Similarity=0.194 Sum_probs=80.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~ 96 (253)
.++|+|+|.+|+|||||+|+|+|... ..+. ..++|.......+.. .+..+.+|||||+.+..... ......+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~-~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGN-WAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEE-CTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCC-CCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 47999999999999999999999874 2222 234555554454443 57789999999998765211 1111222222
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+. ....+|++|+|+|+++ + .....+..++.+. ..|+++|+||+|...
T Consensus 80 ~~-~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 80 YI-LSGDADLLINVVDASN-L-ERNLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (274)
T ss_dssp HH-HHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH-----TCCEEEEEECHHHHH
T ss_pred HH-hhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc-----CCCEEEEEECccchh
Confidence 21 2368899999999984 2 2234444555543 258999999999864
No 103
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.60 E-value=5.2e-15 Score=122.06 Aligned_cols=121 Identities=16% Similarity=0.189 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~ 97 (253)
++|+|+|.+|+|||||+|+|+|....... ..++|.......+. ..+..+.+|||||+.+...... ...+.+.+.+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~--~pg~Tv~~~~~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGN--WPGVTVEKKTGEFL-LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEE--CTTSSSEEEEEEEE-ETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccC--CCCceEEEEEEEEE-ECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 58999999999999999999998643222 23455555444444 3678999999999987654210 1112222222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.. ...+|++|+|+|+++ + .....+..++.+ ...|+++|+||+|...
T Consensus 79 ~~-~~~~d~vi~VvDas~-~-~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 79 VI-DLEYDCIINVIDACH-L-ERHLYLTSQLFE-----LGKPVVVALNMMDIAE 124 (256)
T ss_dssp HH-HSCCSEEEEEEEGGG-H-HHHHHHHHHHTT-----SCSCEEEEEECHHHHH
T ss_pred Hh-hCCCCEEEEEeeCCC-c-hhHHHHHHHHHH-----cCCCEEEEEEChhcCC
Confidence 11 168899999999984 2 122333333332 2358999999999864
No 104
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.60 E-value=2.3e-15 Score=127.12 Aligned_cols=123 Identities=19% Similarity=0.233 Sum_probs=83.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCC-CCCCCcHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFVGKEIVKC 96 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~~~~ 96 (253)
+..+|+|+|++|+|||||+|+|+|........ ..+.|...... +....+..+.++||||+. .. .......+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~-~~~tTr~~~~g-i~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~ 81 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVG-IHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKA 81 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEE-EEEETTEEEEEESSSSCCHHH---HHHHHHHHTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCC-CCCcceeeEEE-EEEECCeeEEEEECcCCCccc---hhhHHHHHHHH
Confidence 34689999999999999999999987533221 12233322222 233467899999999985 21 01111222233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++++|+|+++ ++..+..+++.+.. ...|.++++||+|...
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCc
Confidence 3456678899999999986 99888766655542 1358999999999975
No 105
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.60 E-value=1.9e-15 Score=120.24 Aligned_cols=118 Identities=21% Similarity=0.124 Sum_probs=75.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~ 93 (253)
..+..+|+++|.+|+|||||++++++........ + |............+ ..+.+|||||...+.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~---~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------- 92 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI---P-TVFDNYSANVMVDGKPVNLGLWDTAGLEDYD---------- 92 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CC---C-CSEEEEEEEEECC-CEEEEEEEEECCSGGGT----------
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcC---C-eecceeEEEEEECCEEEEEEEEECCCchhhH----------
Confidence 3456899999999999999999999765422211 1 11111111111233 356699999985432
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++.++|++|+|+|++++.+.... .++..+.... ...|+++|+||+|...
T Consensus 93 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 93 -RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRD 148 (204)
T ss_dssp -TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHT
T ss_pred -HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhcc
Confidence 3344567889999999999855444442 3455555443 2358999999999976
No 106
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.60 E-value=4.1e-15 Score=119.19 Aligned_cols=116 Identities=21% Similarity=0.118 Sum_probs=64.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
+..+|+++|.+|+|||||+|+|++.........+ +.......+. ..+ ..+.+|||||...+ ..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~~-----------~~ 97 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT---VFERYMVNLQ-VKGKPVHLHIWDTAGQDDY-----------DR 97 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCC---CCEEEEEEEE-ETTEEEEEEEEEC-------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc---cceeEEEEEE-ECCEEEEEEEEECCCchhh-----------hH
Confidence 4589999999999999999999987542221111 1111111122 233 37899999997542 23
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++.++|++|+|+|++++.+.... .++..+..... ..|+++|+||+|...
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRK 152 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGS
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhc
Confidence 334556788999999999854433332 34444444322 358999999999986
No 107
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.60 E-value=7.2e-15 Score=115.78 Aligned_cols=117 Identities=13% Similarity=0.083 Sum_probs=74.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
..+..+|+++|++|+|||||+|++++...... ..|.......+. ..+..+.+|||||..... .
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~-----------~ 88 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVE-YKNICFTVWDVGGQDKIR-----------P 88 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEE-ETTEEEEEEECC-----C-----------T
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEE-ECCEEEEEEECCCCHhHH-----------H
Confidence 34568999999999999999999987654321 112222223333 367899999999986533 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+... ...++...... ....|+++|+||+|...
T Consensus 89 ~~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 89 LWRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp THHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 22334467799999999986544333 22334333321 12468999999999975
No 108
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.59 E-value=9.7e-15 Score=114.36 Aligned_cols=116 Identities=15% Similarity=0.105 Sum_probs=78.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+..+|+++|++|+|||||+|+|++....... . |.......+. ..+..+.+|||||...... .
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~----t~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~-----------~ 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTV-P----TVGVNLETLQ-YKNISFEVWDLGGQTGVRP-----------Y 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEEC-S----STTCCEEEEE-ETTEEEEEEEECCSSSSCC-----------C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcC-C----CCceEEEEEE-ECCEEEEEEECCCCHhHHH-----------H
Confidence 45689999999999999999999876643221 1 1112222233 3678999999999865432 1
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++|+|+|++++-+... ...++...+.. ....|+++|+||+|...
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 2345678899999999986655443 22333333321 12468999999999976
No 109
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.5e-15 Score=118.06 Aligned_cols=119 Identities=10% Similarity=0.111 Sum_probs=71.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+.++|+++|++|+|||||+|.|++........ ....+... . ..+..+.+|||||........ ...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~-~~~~~~~~-----~-~~~~~~~l~Dt~G~~~~~~~~-------~~~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAA-----D-YDGSGVTLVDFPGHVKLRYKL-------SDY 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------C-CCCTTCSEEEETTCCBSSCCH-------HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccc-cCCCceee-----e-ecCCeEEEEECCCCchHHHHH-------HHH
Confidence 455899999999999999999999876422111 11111111 1 145678899999997654321 223
Q ss_pred HHhhcCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-----cccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGK-----KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~-~~~~~~~~~~l~~l~~~~g~-----~~~~~~ivv~~k~D~~~ 151 (253)
+......+|++|+|+|++ +.-+ -.....++...+.. ....|+++|+||+|...
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDPKK--LTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCHHH--HHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred HHhhcccCCEEEEEEECCCCchh--HHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 333335579999999987 2211 12222333333211 12368999999999986
No 110
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.59 E-value=5.5e-15 Score=116.83 Aligned_cols=123 Identities=23% Similarity=0.125 Sum_probs=72.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHH
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE 92 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~ 92 (253)
.....++|+|+|.+|||||||+|.+++...........+..... ..+. .++ ..+.+|||||..... ..
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~l~i~Dt~g~~~~~-------~~ 88 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYE--RRIM-VDKEEVTLVVYDIWEQGDAG-------GW 88 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEE--EEEE-ETTEEEEEEEECCCCCSGGG-------HH
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEE--EEEE-ECCEEEEEEEEecCCCccch-------hh
Confidence 33456899999999999999999998754321211111222111 1222 233 467889999985421 11
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+... ..++..+....+ ....|+++|+||+|...
T Consensus 89 ---~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 89 ---LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR 144 (195)
T ss_dssp ---HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTT
T ss_pred ---hHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccc
Confidence 12233456799999999985443322 334444443321 12368999999999874
No 111
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.59 E-value=2.7e-15 Score=116.79 Aligned_cols=115 Identities=19% Similarity=0.083 Sum_probs=75.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+|+++|.+|+|||||++++++.........+.+... ..... ..+ ..+.+|||||...+. ..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~---~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------~~ 69 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVM-VDGKPVNLGLWDTAGQEDYD-----------RL 69 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE---EEEEE-ETTEEEEEEEECCCCSGGGT-----------TT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee---EEEEE-ECCEEEEEEEEECCCCHhHH-----------HH
Confidence 47999999999999999999997654222111111111 11111 233 467799999985432 23
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++|+|+|++++.+.... .++..+....+ ..|+++|+||+|...
T Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 70 RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 123 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHT
T ss_pred HHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccc
Confidence 34566788999999999855444332 35555555432 358999999999975
No 112
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.59 E-value=1.7e-14 Score=119.90 Aligned_cols=120 Identities=21% Similarity=0.230 Sum_probs=78.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
.++|+|+|++|+|||||+|+|+|.... .+. ..+.|......... ..+..+.+|||||+.+....... ..+...+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~-~~~-~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~- 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQH-VGN-WPGVTVEKKEGIME-YREKEFLVVDLPGIYSLTAHSID--ELIARNF- 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEE-EEE-CTTSSCEEEEEEEE-ETTEEEEEEECCCCSCCCSSCHH--HHHHHHH-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcc-cCC-CCCeEEEeeEEEEE-ECCceEEEEeCCCccccccCCHH--HHHHHHh-
Confidence 479999999999999999999998652 222 23345444444444 47788999999999876543321 1122211
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
.....+|++++|+|+++ + .....+...+.+. + ..|+++|+||+|..
T Consensus 77 ~~~~~~d~vi~v~D~~~-~-~~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTC-L-MRNLFLTLELFEM-E---VKNIILVLNKFDLL 122 (271)
T ss_dssp HHTTCCSEEEEEEEGGG-H-HHHHHHHHHHHHT-T---CCSEEEEEECHHHH
T ss_pred hhccCCcEEEEEecCCc-c-hhhHHHHHHHHhc-C---CCCEEEEEEChhcC
Confidence 22368899999999984 2 1222233333332 2 15899999999964
No 113
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.59 E-value=2.7e-15 Score=132.94 Aligned_cols=122 Identities=22% Similarity=0.184 Sum_probs=77.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
++|+|||++|+|||||+|+|+|...... ....++|......... +.+..+.+|||||+...... ....+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~-~~~~~~~l~DT~G~~~~~~~---~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAE-WLNYDFNLIDTGGIDIGDEP---FLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECT-TCSSCCEEEC---------C---HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEE-ECCceEEEEECCCCCCcchh---HHHHHHHHHHH
Confidence 6899999999999999999998764322 2234555555444443 46788999999998632211 33455555666
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++..+|++|+|+|++++++..+..+.+.+.+ ...|+++|+||+|...
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 125 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC--
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCcc
Confidence 6678899999999998899888766665543 2358999999999874
No 114
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.58 E-value=4.4e-15 Score=115.97 Aligned_cols=118 Identities=15% Similarity=0.093 Sum_probs=75.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
....+|+++|++|+|||||+|.|++.........+.+... ...+.. .....+.+|||||...+. .
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 70 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY---TASFEIDTQRIELSLWDTSGSPYYD-----------N 70 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEECSSCEEEEEEEEECCSGGGT-----------T
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE---EEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence 3458999999999999999999998754221111111111 111111 123578999999975432 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++.++|++|+|+|++++.+... ..++..+....+ ..|+++|+||+|...
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 125 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhc
Confidence 23456788999999999985444333 234444544322 358999999999974
No 115
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.58 E-value=1.4e-16 Score=126.20 Aligned_cols=119 Identities=19% Similarity=0.179 Sum_probs=72.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
...++|+|+|.+|+|||||+|+|++........ ...+.......+. ..+ ..+.+|||||......
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~---------- 97 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRT---------- 97 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEE-ETTEEEEEEEECCTTCTTCCC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEE-ECCEEEEEEEEECCCcHhHHH----------
Confidence 445899999999999999999999875422211 1122222222222 233 4789999999765432
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 98 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 98 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTT 152 (199)
T ss_dssp -CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC-
T ss_pred -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCc
Confidence 22345578899999999985544333 223333332211 2368999999999874
No 116
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.58 E-value=5.2e-15 Score=118.13 Aligned_cols=116 Identities=19% Similarity=0.106 Sum_probs=75.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
...+|+|+|.+|+|||||++.+++.........+.+... ...+. .++ ..+.+|||||...+..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~---~~~~~-~~~~~~~~~i~Dt~G~~~~~~----------- 72 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVA-VDGQIVNLGLWDTAGQEDYSR----------- 72 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE---EEEEE-CSSCEEEEEEECCCCCCCCCC-----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE---EEEEE-ECCEEEEEEEEECCCcHHHHH-----------
Confidence 458999999999999999999997654222111111111 11121 233 4889999999876542
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+... ..++..+....+ ..|++||+||.|...
T Consensus 73 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRD 127 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhh
Confidence 23356688899999999985444333 235555554432 358999999999865
No 117
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.58 E-value=7.3e-15 Score=116.34 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+..+|+++|++|||||||++++++....... .+.+.+ ...+. .++..+.+|||||..... ..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-~t~~~~----~~~~~-~~~~~l~i~Dt~G~~~~~-----------~~ 85 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPT----SEELT-IAGMTFTTFDLGGHIQAR-----------RV 85 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS----CEEEE-ETTEEEEEEEECC----C-----------CG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccC-CCCCce----eEEEE-ECCEEEEEEECCCcHhhH-----------HH
Confidence 44589999999999999999999987642211 111121 22233 367899999999975432 23
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCC-ChhhHHHHHc
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELED-NDETLEDYLG 162 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~~-~~~~~~~~~~ 162 (253)
...++.++|++++|+|++++-+... ...++...... ....|+++|+||+|.... ....+.+++.
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 152 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLE--SKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFG 152 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhC
Confidence 3455678899999999986544333 22333333221 134689999999999642 1344555554
No 118
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.58 E-value=2.1e-14 Score=112.20 Aligned_cols=121 Identities=19% Similarity=0.266 Sum_probs=75.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+.++|+|+|++|+|||||+|+|++...+.... .+.+.......+. ..+..+.+|||||...+..... ...+...+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFE-YNGEKFKVVDLPGVYSLTANSI--DEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEE-ETTEEEEEEECCCCSCCSSSSH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEEE-eCCcEEEEEECCCcCccccccH--HHHHHHHH
Confidence 45899999999999999999999976433222 2334444344444 3678999999999987643221 11222221
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
... ..+|++++|+|+++ + . ....++..... ...|+++|+||+|...
T Consensus 81 ~~~-~~~~~~i~v~d~~~-~--~--~~~~~~~~~~~--~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 81 IIN-EKPDLVVNIVDATA-L--E--RNLYLTLQLME--MGANLLLALNKMDLAK 126 (188)
T ss_dssp HHH-HCCSEEEEEEEGGG-H--H--HHHHHHHHHHT--TTCCEEEEEECHHHHH
T ss_pred Hhc-cCCCEEEEEecchh-H--H--HHHHHHHHHHh--cCCCEEEEEEhhhccc
Confidence 111 24689999999873 2 1 12233333322 2358999999999853
No 119
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.58 E-value=3.8e-15 Score=132.01 Aligned_cols=127 Identities=18% Similarity=0.155 Sum_probs=81.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH-
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC- 96 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~- 96 (253)
..++|+++|++|+|||||+|+|+|........ ..+.|.......+. .++..+.+|||||+.+.....+.+ +.+...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~-~~gtT~d~~~~~~~-~~~~~~~l~DT~G~~~~~~~~~~~-e~~~~~~ 250 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFT-YNQQEFVIVDTAGMRKKGKVYETT-EKYSVLR 250 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEE-ETTEEEEETTHHHHTCBTTBCCCC-SHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecC-CCCceeeeeEEEEE-ECCeEEEEEECCCcCcCccccchH-HHHHHHH
Confidence 45899999999999999999999986532221 22344443333333 467889999999986543211100 111111
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
...++..+|++|+|+|++++.+..+..++..+... ..++++|+||+|....
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDK 301 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCC
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCc
Confidence 11233557999999999988998887766655442 2589999999999863
No 120
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.58 E-value=3.8e-14 Score=117.02 Aligned_cols=121 Identities=21% Similarity=0.230 Sum_probs=79.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
..++|+|+|.+|+|||||+|+|+|....... ..+.|.......+. ..+..+.+|||||..+....... ..+...+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~--~pg~tv~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--e~v~~~~ 78 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVAN--WPGVTVEKKEGVFT-YKGYTINLIDLPGTYSLGYSSID--EKIARDY 78 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEE-ETTEEEEEEECCCCSSCCSSSHH--HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceEEEEEEEEE-ECCeEEEEEECCCcCccCCCCHH--HHHHHHH
Confidence 3479999999999999999999997754222 22555555544444 36789999999999876543211 2222222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
... ..+|++++|+|+++ +.. ...+...+.+ ...|+++|+||+|...
T Consensus 79 ~~~-~~~d~ii~V~D~t~-~~~-~~~~~~~l~~-----~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 79 LLK-GDADLVILVADSVN-PEQ-SLYLLLEILE-----MEKKVILAMTAIDEAK 124 (258)
T ss_dssp HHH-SCCSEEEEEEETTS-CHH-HHHHHHHHHT-----TTCCEEEEEECHHHHH
T ss_pred Hhh-cCCCEEEEEeCCCc-hhh-HHHHHHHHHh-----cCCCEEEEEECcCCCC
Confidence 111 57899999999984 322 2223333332 1358999999999863
No 121
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.58 E-value=2.4e-14 Score=120.31 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=77.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccC-----CCC------------------c---ccee-------------
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA-----SSS------------------G---VTST------------- 57 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~-----~~~------------------~---~t~~------------- 57 (253)
...++|+|+|.+|+|||||+|+|+|....+... .+. + .+..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999999987632211 010 0 0000
Q ss_pred ----------eeeeeeEeeCCeEEEEEeCCCCCCCCC--CcHHHHHHHHHHHHhhcCCccEEE-EEEeCCCCCCHHHH-H
Q 025391 58 ----------CEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVL-VVFSVRSRFSQEEE-A 123 (253)
Q Consensus 58 ----------~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~v~d~~~~~~~~~~-~ 123 (253)
.....+.......+.+|||||+..... ..+.....+...+..++..+++++ +|+|++..++..+. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000001111246899999999975331 012222344455555556667665 78898866665552 2
Q ss_pred HHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 124 ALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 124 ~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+++.+.. ...|+++|+||+|...
T Consensus 184 ~~~~~~~-----~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 184 IAKEVDP-----QGQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHHCT-----TCSSEEEEEECGGGSC
T ss_pred HHHHhCC-----CCCeEEEEEEccccCC
Confidence 3333321 2358999999999986
No 122
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.58 E-value=2.3e-15 Score=116.90 Aligned_cols=118 Identities=17% Similarity=0.053 Sum_probs=70.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
...+|+++|++|+|||||++++++.........+.+...... ... ......+.+|||||..... ...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~-~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~ 73 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVV-NGATVNLGLWDTAGQEDYN-----------RLR 73 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCC-CC--------CEEECCCC-CTTT-----------TTG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEE-EEE-CCEEEEEEEEECCCChhhh-----------hhH
Confidence 458999999999999999999997653221111111111100 001 1123456799999986543 233
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..++.++|++++|+|++++.+.... .++..+....+ ..|+++|+||+|...
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 74 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRD 126 (182)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhc
Confidence 4556788999999999854443332 35555555432 358999999999875
No 123
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.57 E-value=1.6e-14 Score=115.72 Aligned_cols=120 Identities=11% Similarity=0.182 Sum_probs=73.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
...++|+|+|++|+|||||+++|++........ ....+.... .....+.+|||||+.... ..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-~~~~~~~~~------~~~~~~~l~Dt~G~~~~~-------~~~~~~ 75 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAAD------YDGSGVTLVDFPGHVKLR-------YKLSDY 75 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSCEEETT------GGGSSCEEEECCCCGGGT-------HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-ecCceEEEE------eeCceEEEEECCCcHHHH-------HHHHHH
Confidence 455899999999999999999999876422111 111111111 145678999999986432 222333
Q ss_pred HHhhcCCccEEEEEEeCC-C--CCCHHHHHHHHHHHHHhc--ccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVR-S--RFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~-~--~~~~~~~~~l~~l~~~~g--~~~~~~~ivv~~k~D~~~ 151 (253)
+......+|++|+|+|++ + .+...... +..+..... .....|+++|+||+|...
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEF-LVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHHHH-HHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHHHH-HHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 333234479999999998 3 33333332 222222211 112368999999999986
No 124
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=3.9e-14 Score=113.48 Aligned_cols=120 Identities=23% Similarity=0.166 Sum_probs=72.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC-ccccCCCCccceeeeeeeeEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
...+|+|||.+|||||||+|.++|... +.....+.+.+... ..+. .++. .+.+|||+|... ...
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~--~~i~-~~~~~~~l~~~Dt~g~~~----------~~~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYE--RTLM-VDGESATIILLDMWENKG----------ENE 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEE--EEEE-ETTEEEEEEEECCTTTTH----------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEE--EEEE-ECCeeeEEEEeecCCCcc----------hhh
Confidence 448999999999999999999997543 22221222222211 1122 2443 567899998642 111
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++|+|+|++++-+... ..+...+... ......|+++|.||+|+..
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~-~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA-RQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTS-GGGTTSCEEEEEECTTCGG
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCcEEEEEEChHHhc
Confidence 223456678899999999985444333 2233333322 1112468999999999863
No 125
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=114.15 Aligned_cols=119 Identities=24% Similarity=0.151 Sum_probs=71.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
.+..+|+|+|.+|+|||||++.+++......... |....+....... ...+.+|||||...+.. +
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~- 85 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDP----NLEDTYSSEETVDHQPVHLRVMDTADLDTPRN--------C- 85 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCT----TCCEEEEEEEEETTEEEEEEEEECCC---CCC--------T-
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCC----CccceeeEEEEECCEEEEEEEEECCCCCcchh--------H-
Confidence 3458999999999999999999998763221111 2211111111123 34688999999865432 1
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~-~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++|+|+|++++-+... ..++..+...... ....|+++|+||+|...
T Consensus 86 ---~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 86 ---ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp ---HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred ---HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 124467799999999985443333 3344444443210 12358999999999863
No 126
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.57 E-value=1.4e-14 Score=113.45 Aligned_cols=147 Identities=19% Similarity=0.089 Sum_probs=86.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~ 93 (253)
..+..+|+|+|.+|+|||||+|.+++....... .+ |.......+. ..+ ..+.+|||||...+.
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~-~~---t~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~---------- 81 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SP---EGGRFKKEIV-VDGQSYLLLIRDEGGPPELQ---------- 81 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC-CT---TCEEEEEEEE-ETTEEEEEEEEECSSSCCHH----------
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CC---CcceEEEEEE-ECCEEEEEEEEECCCChhhh----------
Confidence 345589999999999999999999877543221 11 1111112222 344 467789999986421
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC-----ChhhHHHHHcccC-C
Q 025391 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-----NDETLEDYLGREC-P 166 (253)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~-----~~~~~~~~~~~~~-~ 166 (253)
++..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|.... .......+..... .
T Consensus 82 ------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~ 154 (184)
T 3ihw_A 82 ------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRC 154 (184)
T ss_dssp ------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTC
T ss_pred ------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCC
Confidence 2345689999999986544444 33444443321 1134689999999998421 1233444444321 3
Q ss_pred chhhhhHHHhhhHHHHHH
Q 025391 167 KPLKKGATKLRDQQFEVD 184 (253)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~ 184 (253)
.++..+......++.++.
T Consensus 155 ~~~e~Sa~~~~gv~~lf~ 172 (184)
T 3ihw_A 155 TYYETCATYGLNVERVFQ 172 (184)
T ss_dssp EEEEEBTTTTBTHHHHHH
T ss_pred eEEEecCCCCCCHHHHHH
Confidence 444545545555555444
No 127
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.56 E-value=6.3e-15 Score=117.49 Aligned_cols=118 Identities=16% Similarity=0.103 Sum_probs=75.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeee-eeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (253)
.....+|+|+|.+|+|||||+|.|++........ .|....+ ..+.. .....+.+|||||...+.
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------- 90 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV----PTVFENYTASFEIDTQRIELSLWDTSGSPYYD---------- 90 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC----CCSEEEEEEEEESSSSEEEEEEEEECCSGGGT----------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC----CccceeEEEEEEECCEEEEEEEEeCCCcHhhh----------
Confidence 3455899999999999999999999875432111 1111111 11211 123578999999975432
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.....++..+|++|+|+|++++.+... ..++..+....+ ..|+++|+||+|...
T Consensus 91 -~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 91 -NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 146 (205)
T ss_dssp -TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred -HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhcc
Confidence 223456688999999999985444333 234455554422 358999999999974
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.56 E-value=1e-14 Score=129.96 Aligned_cols=128 Identities=19% Similarity=0.187 Sum_probs=84.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
....+|+++|.+|+|||||+|+|++........ ..+.|.......+. ..+..+.+|||||+.+.....+.. +.+...
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~~~-~~~~~~~l~DT~G~~~~~~~~~~~-e~~~~~ 269 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFT-YNQQEFVIVDTAGMRKKGKVYETT-EKYSVL 269 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEE-ETTEEEEETTGGGTTTBTTBCCCC-SHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEEEE-ECCceEEEEECCCCCcCcccchHH-HHHHHH
Confidence 456899999999999999999999886433322 22333333333333 477899999999975432110000 111111
Q ss_pred -HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 97 -IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 97 -~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
...+...+|++|+|+|++..++..+..++..+.+. + .|+++|+||+|....
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDK 321 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCC
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCC
Confidence 11234566999999999989998888888777662 3 589999999999853
No 129
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.4e-14 Score=115.41 Aligned_cols=115 Identities=19% Similarity=0.148 Sum_probs=74.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.++|+++|.+|+|||||+|+|++...........+... ..... ..+ ..+.+|||||..... ..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------~~ 89 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY---VADIE-VDGKQVELALWDTAGQEDYD-----------RL 89 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEE---EEEEE-ETTEEEEEEEEECTTCTTCT-----------TT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceE---EEEEE-ECCEEEEEEEEECCCcHHHH-----------HH
Confidence 47999999999999999999998764322111111111 11122 233 478899999986543 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..+|++|+|+|++++.+... ..++..+....+ ..|+++|+||+|...
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 90 RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRS 143 (207)
T ss_dssp GGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGG
T ss_pred HHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhc
Confidence 3356678899999999985433222 344555555322 358999999999975
No 130
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.56 E-value=5e-15 Score=131.67 Aligned_cols=121 Identities=23% Similarity=0.233 Sum_probs=74.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+|+|++|+|||||+|+|++........ ..+.|.......+. .++..+.+|||||+.++....+ ........
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~-~~g~~v~liDT~G~~~~~~~ve---~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-LPGTTRDVVESQLV-VGGIPVQVLDTAGIRETSDQVE---KIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSC-CTTCCHHHHHHEEE-ETTEEEEECC-----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCeeEEEEEEEEE-ECCEEEEEEECCccccchhHHH---HHHHHHHh
Confidence 4789999999999999999999875422221 22334333333333 4788999999999965432111 11112223
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+..+|++|+|+|++++.+..+..+++.+.. .|+++|+||+|...
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~ 344 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVE 344 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSC
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCc
Confidence 45678899999999998888877666554432 48999999999986
No 131
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.55 E-value=2.3e-15 Score=121.11 Aligned_cols=122 Identities=20% Similarity=0.129 Sum_probs=76.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
......+|+|+|.+|+|||||+|+++............+.+......... ..+..+.+|||||......
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~---------- 79 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIKFNVWDTAGQEKFGG---------- 79 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-TEEEEEEEEEECSGGGTSC----------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCChHHHhH----------
Confidence 33455899999999999999999955332211112222333333322221 1345789999999754332
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++.++|++|+|+|++++.+... ..++..+....+ ..|+++|+||+|...
T Consensus 80 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 80 -LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD 133 (221)
T ss_dssp -CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred -HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence 12234567899999999985444333 334444444432 358999999999874
No 132
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.55 E-value=5.2e-15 Score=132.14 Aligned_cols=119 Identities=22% Similarity=0.266 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCC-CCCCCcHHH-HHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFV-GKEIVKCI 97 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~-~~~~~~~~ 97 (253)
.+|+|+|.+|+|||||+|+|++....... ...++|.......+. .++..+.+|||||+. .+....+.. .....
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs-~~~gTT~d~~~~~i~-~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~--- 318 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIV-IRGILFRIVDTAGVRSETNDLVERLGIERTL--- 318 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEE-ETTEEEEEEESSCCCSSCCTTCCCCCHHHHH---
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccC-CCCCeeeeeEEEEEe-cCCeEEEEEECCCccccchhhHHHHHHHHHH---
Confidence 79999999999999999999997642222 122344444444444 378899999999997 543222110 01111
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+..+|++|+|+|++++.+..+..+++.+ . ..|+++|+||+|...
T Consensus 319 -~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 319 -QEIEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVE 364 (482)
T ss_dssp -HHHHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCC
T ss_pred -HHhhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECccccc
Confidence 223456999999999878887766555433 2 248999999999975
No 133
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.54 E-value=4.1e-13 Score=115.74 Aligned_cols=130 Identities=17% Similarity=0.135 Sum_probs=75.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCC--CCccc------------------------ee--------------
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--SSGVT------------------------ST-------------- 57 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~--~~~~t------------------------~~-------------- 57 (253)
..++|+|+|.+|+|||||+|+|+|....+.+.. ....+ ..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 347999999999999999999999875322211 00001 00
Q ss_pred ---------eeeeeeEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCCc-cEEEEEEeCCCCCCHHHHHHH
Q 025391 58 ---------CEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEEEAAL 125 (253)
Q Consensus 58 ---------~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~l~v~d~~~~~~~~~~~~l 125 (253)
.....+.......++||||||+...... .......+...+..++..+ +++|+|++++..+...+ ..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~--~~ 187 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--AL 187 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH--HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH--HH
Confidence 0000011112467999999999764321 2222334455555444444 45666677765555444 22
Q ss_pred HHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 126 HSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 126 ~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+....+ ...|+++|+||+|...
T Consensus 188 ~i~~~~~~--~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 188 KVAKEVDP--QGQRTIGVITKLDLMD 211 (353)
T ss_dssp HHHHHHCT--TCTTEEEEEECGGGSC
T ss_pred HHHHHhCc--CCCceEEEeccccccC
Confidence 33333322 2358999999999985
No 134
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.54 E-value=2.4e-14 Score=111.87 Aligned_cols=122 Identities=20% Similarity=0.141 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
++|+++|.+|+|||||+|+|++.... .... .+.+...... .. . .+.+|||||+.............+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~-~~~t~~~~~~--~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKR-PGVTRKIIEI--EW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSS-TTCTTSCEEE--EE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCC-CCccceeEEE--ec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 58999999999999999999988642 2221 2333332222 11 2 688999999765443332222333333322
Q ss_pred h----cCCccEEEEEEeCCCCCCHHHHHHHH---------HHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 A----KDGIHAVLVVFSVRSRFSQEEEAALH---------SLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~----~~~~~~~l~v~d~~~~~~~~~~~~l~---------~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+ ..+++++++|+|.. .+......+.. .+.... ....|+++|+||+|...
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLR--ELDIPTIVAVNKLDKIK 136 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHH--HTTCCEEEEEECGGGCS
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHH--hcCCceEEEeehHhccC
Confidence 2 34556777777765 22111011111 111111 12358999999999986
No 135
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.54 E-value=5.4e-14 Score=116.93 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=75.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+|+|.+|+|||||+|.|+|...+.... .++|.......+. . +..+.+|||||..+...... .+.+...+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~--pg~tv~~~~~~~~-~-~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNW--PGVTVERKSGLVK-K-NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS--SCCCCSCEEEECT-T-CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCCcEEEEEEEEe-c-CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 4799999999999999999999976433222 2444443333332 2 66899999999987643221 122222221
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
. ...+|++++|+|+++ +. ....+...+.+ ...|+++|+||+|..
T Consensus 77 ~-~~~~d~vi~V~D~t~-~e-~~~~~~~~l~~-----~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 77 L-SQRADSILNVVDATN-LE-RNLYLTTQLIE-----TGIPVTIALNMIDVL 120 (272)
T ss_dssp H-TTCCSEEEEEEEGGG-HH-HHHHHHHHHHH-----TCSCEEEEEECHHHH
T ss_pred h-cCCCCEEEEEecCCc-hH-hHHHHHHHHHh-----cCCCEEEEEEChhhC
Confidence 1 146899999999973 21 12223333333 125899999999985
No 136
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.53 E-value=2.2e-14 Score=112.11 Aligned_cols=117 Identities=18% Similarity=0.146 Sum_probs=66.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeE------eeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV------LKDGQVVNVIDTPGLFDFSAGSEFVGKE 92 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~liDtpG~~~~~~~~~~~~~~ 92 (253)
..+|+|+|++|+|||||++.|++......+.. ..|....+.... ......+.+|||||.. +
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~--~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~ 68 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQ--SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE-----------E 68 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-------------CSEEEEEEEC---------CEEEEEEECSHH-----------H
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCc--ceeccEEeEEeeeccccCCCCceEEEEEecCCCH-----------H
Confidence 36999999999999999999998632111111 112111111111 0135578999999963 2
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+......++.+.+++++|+|++++.+..+ ..++..+.... ...|+++|.||+|...
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSD 126 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCC
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCccc
Confidence 22222334456689999999985432211 23333333321 2358999999999875
No 137
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.53 E-value=7.6e-14 Score=119.17 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=75.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
..++|+|+|.+|+|||||++.|++....... .|.......+. ..+..+.+|||||...+. ...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-----pT~~~~~~~~~-~~~~~l~i~Dt~G~~~~~-----------~~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVE-YKNISFTVWDVGGQDKIR-----------PLW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-----EETTEEEEEEE-ETTEEEEEEECC-----C-----------CSH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-----cccceEEEEEe-cCcEEEEEEECCCCHhHH-----------HHH
Confidence 3469999999999999999999987642221 23333344444 467899999999965433 233
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~--~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++|+|+|++++-+... ...++...+... ...|++||+||+|...
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHhccCCEEEEEEECCchHHHHH--HHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 445578899999999986655443 122222222211 2468999999999975
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.53 E-value=2.8e-14 Score=125.40 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=82.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
+....++|+|+|++|+|||||+|+|++....... ...+.|...............+.+|||||+.++..-.......
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~-- 106 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEK-- 106 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHH--
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHH--
Confidence 3445689999999999999999999998753222 2334455555555554333489999999998765432211111
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~ 153 (253)
...++..+|++|+|+|+ ........++.++.+. ..|+++|+||+|.....
T Consensus 107 --~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 107 --ARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp --HHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCC
T ss_pred --HHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCcc
Confidence 22344678999999998 5666677777777764 24899999999998643
No 139
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.51 E-value=1.2e-14 Score=124.45 Aligned_cols=126 Identities=18% Similarity=0.134 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
.+|+|+|.+|||||||+|+|++...... .....|.......+....+..+.+|||||+.+.......+...+.+.+.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~- 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE- 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH-
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH-
Confidence 3689999999999999999998754221 1222344444444443334789999999975322111112233333333
Q ss_pred hcCCccEEEEEEeCCC---CCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRS---RFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~---~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+|++|+|+|+++ +-+..+ ..++..+..+.......|+++|+||+|...
T Consensus 236 ---~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 236 ---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp ---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred ---hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 3589999999985 222233 334444544321123468999999999985
No 140
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=2.1e-13 Score=117.86 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=66.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCC-----CccceeeeeeeeEe-eCC--eEEEEEeCCCCCCCCCCcH--
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSE-- 87 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~--~~~~liDtpG~~~~~~~~~-- 87 (253)
..++|+|+|++|+|||||+|+|++...+..+..+ ...|.......... ..+ ..+.+|||||+.+.....+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 3478999999999999999999988765443221 01222222222111 123 3689999999966432211
Q ss_pred -----HHHHHHHHHHHhh---------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 88 -----FVGKEIVKCIGMA---------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 88 -----~~~~~~~~~~~~~---------~~~~~~~l~v~d~-~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+...+...+... ..++|+++|+++. ...+...+..+++.+ .. ..|+++|+||+|...
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~--~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTLT 188 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----cc--CCCEEEEEECCCCCC
Confidence 1111222223221 1245788888876 557877776555543 22 358999999999986
No 141
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.50 E-value=8.8e-14 Score=125.60 Aligned_cols=117 Identities=15% Similarity=0.192 Sum_probs=83.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcc----------------cc----CCCCccceeeeeeeeEeeCCeEEEEEeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFK----------------SR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTP 77 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtp 77 (253)
..++|+|+|++|+|||||+|+|++..... .. ....++|.......+. +.+..+++||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFP-YKDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEE-ETTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEE-eCCEEEEEEECC
Confidence 45899999999999999999997322110 00 0012334434344444 478899999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
|+.++. .....++..+|++|+|+|++...+.....++..+... + .|+++|+||+|...
T Consensus 91 G~~df~-----------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-~----iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 91 GHADFT-----------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-H----TPIMTFINKMDRDT 148 (528)
T ss_dssp CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-T----CCEEEEEECTTSCC
T ss_pred CchhHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCcc
Confidence 998765 2234455678999999999988888887777665542 2 48999999999975
No 142
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.50 E-value=1.1e-12 Score=115.30 Aligned_cols=120 Identities=16% Similarity=0.284 Sum_probs=79.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc-CCCCccceeeeeeeeEee--------------C--------CeEEEE
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLK--------------D--------GQVVNV 73 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l 73 (253)
.+.++|+++|+.++|||||+++|+|....... ....++|....+...... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 34589999999999999999999976421111 112334443332221110 0 167999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
|||||+ ..+..........+|++|+|+|+++.. .......+..+.. ++. +|+++++||+|...
T Consensus 86 iDtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 86 VDSPGH-----------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVD 149 (408)
T ss_dssp EECSSH-----------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSC
T ss_pred EECCCH-----------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCC
Confidence 999996 334444445556789999999998776 6666666665543 343 37999999999986
No 143
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.49 E-value=3.8e-13 Score=119.08 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=80.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc------------CC-------------------CCccceeeeeeeeEe
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------------AS-------------------SSGVTSTCEMQRTVL 65 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~------------~~-------------------~~~~t~~~~~~~~~~ 65 (253)
.+.++|+++|+.|+|||||+|+|++....... .. ..++|....+..+.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~- 100 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS- 100 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee-
Confidence 34489999999999999999999865411000 00 02344444444343
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEe
Q 025391 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (253)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~ 145 (253)
..+..+.+|||||+.++ .......+..+|++|+|+|+++.........+..+.. ++. +++++|+|
T Consensus 101 ~~~~~~~iiDtpGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~---~~iIvviN 165 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQY-----------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGI---KHIVVAIN 165 (434)
T ss_dssp CSSEEEEEEECCCSGGG-----------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CEEEEEEE
T ss_pred cCCceEEEEECCChHHH-----------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEE
Confidence 35778999999997542 2233344578899999999998888777777665544 332 36999999
Q ss_pred CCCCCC
Q 025391 146 GGDELE 151 (253)
Q Consensus 146 k~D~~~ 151 (253)
|+|...
T Consensus 166 K~Dl~~ 171 (434)
T 1zun_B 166 KMDLNG 171 (434)
T ss_dssp CTTTTT
T ss_pred cCcCCc
Confidence 999975
No 144
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.49 E-value=3.1e-13 Score=107.47 Aligned_cols=125 Identities=16% Similarity=0.299 Sum_probs=72.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.+..+|+|+|++|+|||||+|.|+|...........+.+...... .. .+ .+.++||||+.......+. ...+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~--~~-~~-~~~l~Dt~G~~~~~~~~~~-~~~~~~~ 98 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF--EV-AD-GKRLVDLPGYGYAEVPEEM-KRKWQRA 98 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE--EE-ET-TEEEEECCCCC------CC-HHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE--Ee-cC-CEEEEECcCCcccccCHHH-HHHHHHH
Confidence 345899999999999999999999976211111122333322221 11 22 5789999998643221110 1112222
Q ss_pred HH---hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IG---MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~---~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+. .....++++++++|++...+..+.....++.. .+ .|.++|.||+|.+.
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~s 151 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SN----IAVLVLLTKADKLA 151 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSC
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEecccCCC
Confidence 22 22356789999999987777665555555543 22 47889999999986
No 145
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.49 E-value=4.9e-14 Score=128.00 Aligned_cols=135 Identities=19% Similarity=0.290 Sum_probs=79.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCcccee-eeeeee----------------------E---------
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQRT----------------------V--------- 64 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~-~~~~~~----------------------~--------- 64 (253)
...++|+|+|.+|+|||||+|+|+|.............|.. ...... .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 34589999999999999999999998753111111111111 000000 0
Q ss_pred ----eeCC---eEEEEEeCCCCCCCCCCcHHHHHH--HHHHHHhhcCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcc
Q 025391 65 ----LKDG---QVVNVIDTPGLFDFSAGSEFVGKE--IVKCIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGK 134 (253)
Q Consensus 65 ----~~~~---~~~~liDtpG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~~l~~l~~~~g~ 134 (253)
...+ ..+++|||||+.+.... .+.+. +......++..+|++|+|+|++. .....+..+++.+...
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--- 217 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--- 217 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---
T ss_pred ceEEeccccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---
Confidence 0000 36899999999752210 00000 22333444456799999999985 3666666666555431
Q ss_pred cccCeEEEEEeCCCCCCCChhhHHHH
Q 025391 135 KIFDYMIVVFTGGDELEDNDETLEDY 160 (253)
Q Consensus 135 ~~~~~~ivv~~k~D~~~~~~~~~~~~ 160 (253)
..++++|+||+|... ...+...
T Consensus 218 --~~pvilVlNK~Dl~~--~~el~~~ 239 (550)
T 2qpt_A 218 --EDKIRVVLNKADMVE--TQQLMRV 239 (550)
T ss_dssp --GGGEEEEEECGGGSC--HHHHHHH
T ss_pred --CCCEEEEEECCCccC--HHHHHHH
Confidence 247999999999986 5444433
No 146
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.49 E-value=1.5e-13 Score=123.58 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=79.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
...+|+|+|.+|+|||||+|.|++..... . ..|.......+. ..+..+.+|||||...+. ...
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~--~---~~T~~~~~~~~~-~~~~~~~l~Dt~G~~~~~-----------~~~ 383 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT--T---IPTVGFNVETVT-YKNVKFNVWDVGGQDKIR-----------PLW 383 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC--C---CCCSSEEEEEEE-SSSCEEEEEEECCCGGGS-----------GGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC--c---CCccceeEEEEE-eCCEEEEEEECCCcHHHH-----------HHH
Confidence 45899999999999999999999876321 1 124444444444 367899999999975432 334
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~--~~~~~~ivv~~k~D~~~ 151 (253)
..++..+|++|+|+|++++.+... ...++...+.. ....|++||+||+|...
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDE--ARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred HHHhccCCEEEEEEECcchhHHHH--HHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 566788999999999986544433 22233333221 12468999999999975
No 147
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.49 E-value=3.1e-13 Score=119.69 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=80.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc-----------------------------CCCCccceeeeeeeeEeeC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLKD 67 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 67 (253)
.+.++|+++|+.++|||||+|.|++....... ....++|.......+.. .
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~ 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-E 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-C
Confidence 34589999999999999999999765321100 01135566666655553 6
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhcccccCeE
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFDYM 140 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-------~~~~~~l~~l~~~~g~~~~~~~ 140 (253)
+..+.+|||||+.+ +.......+..+|++|+|+|++.... ...+..+..+.. .+. +++
T Consensus 94 ~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v---~~i 158 (439)
T 3j2k_7 94 KKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV---KHL 158 (439)
T ss_pred CeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---CeE
Confidence 77999999999743 33444444567899999999986653 345555554443 232 248
Q ss_pred EEEEeCCCCCC
Q 025391 141 IVVFTGGDELE 151 (253)
Q Consensus 141 ivv~~k~D~~~ 151 (253)
++++||+|...
T Consensus 159 IvviNK~Dl~~ 169 (439)
T 3j2k_7 159 IVLINKMDDPT 169 (439)
T ss_pred EEEeecCCCcc
Confidence 99999999864
No 148
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.49 E-value=1.1e-13 Score=122.80 Aligned_cols=126 Identities=21% Similarity=0.211 Sum_probs=76.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH--HH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI--VK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~--~~ 95 (253)
..++|+|+|++|||||||+|+|+|........ ..+.|.......+. .++..+.+|||||+.............+ ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~-~~gtT~d~~~~~i~-~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVF-IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEE-ETTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCC-CCCCcCCceEEEEE-ECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 45899999999999999999999986532222 22334333333333 4788899999999853221100000000 01
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
. ..++..+|++++|+|++...+..+..+...+.. .+ .++++|+||+|...
T Consensus 257 ~-~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~----~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 257 V-VDSIEKADVVVIVLDATQGITRQDQRMAGLMER-RG----RASVVVFNKWDLVV 306 (439)
T ss_dssp H-HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGST
T ss_pred H-HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCCC
Confidence 1 122345689999999987888777555554443 23 57999999999986
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.49 E-value=1.5e-13 Score=123.27 Aligned_cols=118 Identities=15% Similarity=0.224 Sum_probs=79.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccc-----------------------------cCCCCccceeeeeeeeEeeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKDG 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~ 68 (253)
+.++|+++|.+|+|||||+|+|++...... .....++|.......+.. .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 448999999999999999999976521000 011125565555555543 67
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccCeEE
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI 141 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~l~~l~~~~g~~~~~~~i 141 (253)
..+.+|||||+.+ +.......+..+|++|+|+|+++. +.......+..+.. ++. ++++
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLI 175 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEE
Confidence 8999999999853 234444555788999999999865 34455555544443 332 3699
Q ss_pred EEEeCCCCCC
Q 025391 142 VVFTGGDELE 151 (253)
Q Consensus 142 vv~~k~D~~~ 151 (253)
||+||+|...
T Consensus 176 vviNK~Dl~~ 185 (483)
T 3p26_A 176 IAMNKMDNVD 185 (483)
T ss_dssp EEEECGGGGT
T ss_pred EEEECcCccc
Confidence 9999999875
No 150
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.48 E-value=7.8e-14 Score=129.99 Aligned_cols=122 Identities=19% Similarity=0.209 Sum_probs=77.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCcccee-eeee-----eeEe-------------------eCC----
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQ-----RTVL-------------------KDG---- 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~-~~~~-----~~~~-------------------~~~---- 68 (253)
+.++|+|+|.+|+|||||+|+|+|....+.+..+...... ..+. .... ..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4589999999999999999999999865544332221000 0000 0000 000
Q ss_pred --------------------------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHH
Q 025391 69 --------------------------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE 122 (253)
Q Consensus 69 --------------------------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~ 122 (253)
..+.+|||||+.+... ....+..+++.+|++|+|+|++..++..+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~ 219 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGER 219 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence 3689999999864221 122333444678999999999888888776
Q ss_pred HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 123 AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 123 ~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+... +. ....|+++|+||+|...
T Consensus 220 ~~l~~~---l~-~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 220 RYLENY---IK-GRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp HHHHHH---TT-TSCCCEEEEEECGGGGG
T ss_pred HHHHHH---HH-hhCCCEEEEEECccccc
Confidence 554322 11 11247999999999874
No 151
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=7.6e-13 Score=116.03 Aligned_cols=128 Identities=17% Similarity=0.202 Sum_probs=70.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCC----Cccceeeeeeee-EeeC--CeEEEEEeCCCCCCCCCCcHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMQRT-VLKD--GQVVNVIDTPGLFDFSAGSEFV 89 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~----~~~t~~~~~~~~-~~~~--~~~~~liDtpG~~~~~~~~~~~ 89 (253)
+-.++|+|+|++|+|||||+|+|+|...+..+... ...+........ .... ...+++|||||+...... ...
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-~~~ 107 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-SNC 107 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC------------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc-hhh
Confidence 34478999999999999999999998764332110 011211111111 1111 237899999999764221 111
Q ss_pred HHHH----HHHHH-----------hhc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 90 GKEI----VKCIG-----------MAK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 90 ~~~~----~~~~~-----------~~~--~~~~~~l~v~d~~-~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+..+ ...+. ..+ +.+|++||+++++ ..+++.+..+++.+.. ..++|+|+||+|.+.
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 181 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCcc
Confidence 1111 11111 112 3456788888887 5899888766665532 258999999999986
No 152
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.48 E-value=3.9e-13 Score=120.38 Aligned_cols=116 Identities=18% Similarity=0.294 Sum_probs=80.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcc-----ccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFK-----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (253)
.++|+++|+.++|||||+++|++..... ......++|....+..... .+..+.+|||||+ ..+
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh-----------~~~ 86 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGH-----------ADL 86 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSH-----------HHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCCh-----------HHH
Confidence 4799999999999999999999876100 1112334565555555543 6789999999997 334
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.......+..+|++|+|+|+++...+.....+..+.. ++ .|.++|+||+|...
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FN----IPIIVVITKSDNAG 139 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCBCEEEECTTSSC
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cC----CCEEEEEECCCccc
Confidence 4445556678899999999988888888777776554 34 35799999999986
No 153
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.22 E-value=3.1e-15 Score=118.77 Aligned_cols=118 Identities=17% Similarity=0.045 Sum_probs=74.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
....+|+++|.+|+|||||++++++...........+... ...+.. .....+.+|||||.... ..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMVDGKPVNLGLWDTAGQEDY-----------DR 93 (204)
Confidence 4558999999999999999999987654222111111111 111111 12345679999997542 23
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++|+|+|++++.+.... .++..+....+ ..|+++|+||+|...
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 148 (204)
Confidence 334456778999999999865544442 44444444322 358999999999975
No 154
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.47 E-value=9.4e-13 Score=109.28 Aligned_cols=135 Identities=20% Similarity=0.254 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC-----ccc-eeeeeeeeEeeC--CeEEEEEeCCCCCCCCCCc---HH
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----GVT-STCEMQRTVLKD--GQVVNVIDTPGLFDFSAGS---EF 88 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~-----~~t-~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~---~~ 88 (253)
++++|+|+||+|||||+|+|+|...+..+.... ..+ .......+.... ...++++|+||+....... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 789999999999999999999987655442110 011 111111111111 2378999999997543221 11
Q ss_pred HHH----HHHHHHHhh----------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 025391 89 VGK----EIVKCIGMA----------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (253)
Q Consensus 89 ~~~----~~~~~~~~~----------~~~~~~~l~v~d~-~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~ 153 (253)
+.. .+....... ...+++.++++|. ++.+++.+...++.+.+. .++++|++|+|.+.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt-- 154 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMT-- 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSC--
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCC--
Confidence 211 122222111 1235888888875 578999998888777653 37999999999998
Q ss_pred hhhHHHHHc
Q 025391 154 DETLEDYLG 162 (253)
Q Consensus 154 ~~~~~~~~~ 162 (253)
...+..+..
T Consensus 155 ~~e~~~~k~ 163 (270)
T 3sop_A 155 LEEKSEFKQ 163 (270)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555544
No 155
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.4e-13 Score=117.44 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=81.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (253)
..+|+|||.++||||||+|+|+|..... ....++|..+....+. ..+.++.++||||+.............+...+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~-~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIR-YKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEE-ETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEE-eCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 3699999999999999999999986432 2234566666665555 588999999999998654444434444444444
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccCeEEEEEeCCCCC
Q 025391 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK-IFDYMIVVFTGGDEL 150 (253)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~-~~~~~ivv~~k~D~~ 150 (253)
. +|++++|+|+++++. +...+..-...++.. ..+|.++++||.|.-
T Consensus 149 ~----ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 T----CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp H----CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred h----cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 4 489999999874433 233333223333433 345788999999974
No 156
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.46 E-value=3.6e-13 Score=113.87 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=76.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
||+++|.+|+|||||++.+.+...+. .....+.|.......+ .....+.+|||||...+..+. + ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~-~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~------l--~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL-DTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS------Y--DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG-GGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS------H--HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC-ccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh------h--hhhhh
Confidence 68999999999999999888664322 1112233333333222 134689999999998764210 0 12355
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+++++++|+|+|+++++...-..+.+++..........|+++|+||+|...
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 689999999999987743333333333433211122358999999999986
No 157
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.46 E-value=1e-13 Score=109.61 Aligned_cols=117 Identities=21% Similarity=0.194 Sum_probs=71.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.++|+|+|++|||||||++.|+|.........+.+ .......+. .++ ..+.+|||||...... .
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~--~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~-----------~ 70 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQ-VDGKTIKAQIWDTAGQERYRR-----------I 70 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCS--CEEEEEEEE-ETTEEEEEEEEECSSGGGTTC-----------C
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEEE-ECCEEEEEEEEECCCchhhhh-----------h
Confidence 47999999999999999999998764222211111 122222232 244 3567899999754321 1
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...++..++++++|+|+++..+... ..++..+.... ....|+++|+||+|...
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccc
Confidence 2233457799999999875444332 22333333321 12358999999999863
No 158
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.46 E-value=6e-13 Score=116.69 Aligned_cols=120 Identities=17% Similarity=0.199 Sum_probs=76.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc-C------------CCCccceeeeee--eeE--eeCCeEEEEEeCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-A------------SSSGVTSTCEMQ--RTV--LKDGQVVNVIDTPGL 79 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-~------------~~~~~t~~~~~~--~~~--~~~~~~~~liDtpG~ 79 (253)
.+.++|+++|++|+|||||+|+|++....... . .....+...... ... ......+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 34589999999999999999999985321100 0 000000000000 000 011268999999997
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+ +.......+..+|++|+|+|+++.. ......++..+... +. +|+++|+||+|...
T Consensus 86 ~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 86 EV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVS 143 (403)
T ss_dssp GG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred HH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccc
Confidence 43 2333444457789999999998776 56666666655543 43 37999999999986
No 159
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.46 E-value=1.8e-13 Score=107.85 Aligned_cols=153 Identities=18% Similarity=0.103 Sum_probs=81.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC-ccccCCCCccceeeeeeeeEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV 94 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~ 94 (253)
+..+|+|+|.+|||||||+|.++|... +.....+.+.+... ..+. .++. .+.+|||+|......
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~l~~~Dt~~~~~~~~---------- 71 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYE--RTLM-VDGESATIILLDMWENKGENE---------- 71 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEE--EEEE-ETTEEEEEEEECCCCC----C----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEE--EEEE-ECCeEEEEEEEEeccCcchhh----------
Confidence 348999999999999999999997432 21211112222211 1122 2443 567899998653100
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCChhhHH---HHHcccCCchhh
Q 025391 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE---DYLGRECPKPLK 170 (253)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~~~~~~---~~~~~~~~~~l~ 170 (253)
.....++..+|++++|+|++++-+... ..++..+..... ....|+++|.||+|.........+ .+.......++.
T Consensus 72 ~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e 150 (192)
T 2cjw_A 72 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIE 150 (192)
T ss_dssp TTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred hHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEE
Confidence 011233345689999999986544433 233344444321 123589999999998641111111 221212224445
Q ss_pred hhHHHhhhHHHHHH
Q 025391 171 KGATKLRDQQFEVD 184 (253)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (253)
.+......+..++.
T Consensus 151 ~SA~~g~~v~~lf~ 164 (192)
T 2cjw_A 151 TSAAVQHNVKELFE 164 (192)
T ss_dssp CBTTTTBSHHHHHH
T ss_pred eccccCCCHHHHHH
Confidence 55555555555554
No 160
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.46 E-value=6.9e-13 Score=119.86 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=79.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc--------------------CCCCccceeeeeeeeEeeCCeEEEEEeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTP 77 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~--------------------~~~~~~t~~~~~~~~~~~~~~~~~liDtp 77 (253)
..++|+|+|++|+|||||+++|++....... ....+.|.......+. +.+..+++||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP-YHDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEE-ETTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEE-ECCeEEEEEECC
Confidence 4589999999999999999999864211100 0012233333333333 467899999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
|+.++. .....++..+|++|+|+|++.........++..+... ..|+++++||+|....
T Consensus 91 G~~df~-----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~-----~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFS-----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR-----DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT-----TCCEEEEEECTTSCCS
T ss_pred CChhHH-----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc-----CCCEEEEEcCcCCccc
Confidence 997764 2233445678999999999888877666665544321 2479999999999763
No 161
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.45 E-value=1.2e-12 Score=115.13 Aligned_cols=120 Identities=16% Similarity=0.254 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccc-cCCCCccceeeeeeeeEee----------------------CCeEEEE
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLK----------------------DGQVVNV 73 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~----------------------~~~~~~l 73 (253)
.+.++|+++|+.++|||||+++|+|...... .....++|....+...... ....+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 3458999999999999999999997642111 1112334444333222110 0167999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
|||||+. .+..........+|++|+|+|+++.. .......+..+.. ++. +|+++++||+|...
T Consensus 88 iDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~---~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 88 IDAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQ---KNIIIAQNKIELVD 151 (410)
T ss_dssp EECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGSC
T ss_pred EECCChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEECccCCC
Confidence 9999963 33344444446779999999998776 6677666665544 343 37999999999986
No 162
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.45 E-value=4.4e-13 Score=123.09 Aligned_cols=119 Identities=15% Similarity=0.220 Sum_probs=81.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccC-----------------------------CCCccceeeeeeeeEeeC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA-----------------------------SSSGVTSTCEMQRTVLKD 67 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~ 67 (253)
.+.++|++||++|+|||||+|+|++........ ...++|.......+.. .
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-S
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-C
Confidence 445899999999999999999999774311110 0134565555555543 6
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccCeE
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYM 140 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~l~~l~~~~g~~~~~~~ 140 (253)
+..+.||||||+.+ +.......+..+|++|+|+|++.. ........+..+.. +|. +++
T Consensus 244 ~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~i 308 (611)
T 3izq_1 244 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNL 308 (611)
T ss_dssp SCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEE
T ss_pred CceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeE
Confidence 78999999999854 334455666889999999999742 23344444443332 232 369
Q ss_pred EEEEeCCCCCC
Q 025391 141 IVVFTGGDELE 151 (253)
Q Consensus 141 ivv~~k~D~~~ 151 (253)
+||+||+|...
T Consensus 309 IVVvNKiDl~~ 319 (611)
T 3izq_1 309 IIAMNKMDNVD 319 (611)
T ss_dssp EEEEECTTTTT
T ss_pred EEEEecccccc
Confidence 99999999875
No 163
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.45 E-value=8.3e-15 Score=132.05 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=85.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+.++|+++|++|+|||||+++|++...... ...+.|.......+....+..++||||||+.++.. ..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-----------~~ 69 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-----------MR 69 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-----------SB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-----------HH
Confidence 357999999999999999999997654322 33445555544444433566899999999876542 22
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+..+|++|+|+|+++...+.....+..+... + .|+++++||+|...
T Consensus 70 ~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-~----vPiIVViNKiDl~~ 118 (537)
T 3izy_P 70 ARGTQVTDIVILVVAADDGVMKQTVESIQHAKDA-H----VPIVLAINKCDKAE 118 (537)
T ss_dssp BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT-T----CCEEECCBSGGGTT
T ss_pred HHHHccCCEEEEEEECCCCccHHHHHHHHHHHHc-C----CcEEEEEecccccc
Confidence 3455778999999999988888887777665542 2 47999999999874
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.44 E-value=5.8e-13 Score=116.56 Aligned_cols=117 Identities=17% Similarity=0.205 Sum_probs=81.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC------cc----cc----CCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRA------FK----SR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~------~~----~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (253)
+.++|+++|+.|+|||||+++|++... +. .. ....+.|.......+. ..+..+.+|||||+.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~~~iiDtpG~~--- 77 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHA--- 77 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHH---
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-cCCeEEEEEECCChH---
Confidence 347999999999999999999987411 00 00 0023445544333333 256899999999973
Q ss_pred CCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCe-EEEEEeCCCCCC
Q 025391 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELE 151 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~-~ivv~~k~D~~~ 151 (253)
.+.......+..+|++|+|+|+++.........+..+.. .+ .| +++++||+|...
T Consensus 78 --------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~----vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 78 --------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IG----VEHVVVYVNKADAVQ 133 (397)
T ss_dssp --------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCCEEEEEECGGGCS
T ss_pred --------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCeEEEEEECcccCC
Confidence 344445556788999999999998888877777755544 23 24 789999999974
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.44 E-value=1.2e-12 Score=113.16 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
++|+|+|++|||||||+|.|+|...... ...+.|.......+. ..+..+.++||||+.... +. .....+...+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~-~~g~~v~l~DT~G~i~~l-p~-~lve~f~~tl~- 253 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIP-INNRKIMLVDTVGFIRGI-PP-QIVDAFFVTLS- 253 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEE-ETTEEEEEEECCCBCSSC-CG-GGHHHHHHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEE-ECCEEEEEEeCCCchhcC-CH-HHHHHHHHHHH-
Confidence 4599999999999999999999865221 122334333333343 366889999999975421 11 12233333333
Q ss_pred hcCCccEEEEEEeCCCCC--CHHHHH-HHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRF--SQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~--~~~~~~-~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....+|++++|+|++++. ...... +...+.. ++. ...|+++|+||+|.+.
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~-~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGV-SGKPILVTLNKIDKIN 306 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTC-CSCCEEEEEECGGGCC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCc-CCCCEEEEEECCCCCC
Confidence 346789999999997543 122222 2233333 332 1358999999999986
No 166
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.44 E-value=1.2e-12 Score=122.00 Aligned_cols=119 Identities=24% Similarity=0.346 Sum_probs=80.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccc--c-CC-------------CCccceeeeeeeeEeeCCeEEEEEeCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS--R-AS-------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~--~-~~-------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (253)
...++|+|+|++|+|||||+|+|++...... + .. ..++|.......+. +.+..+++|||||+.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA-WEGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE-ETTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE-ECCeeEEEEECcCCc
Confidence 4458999999999999999999984211000 0 00 12334444444343 467899999999998
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
++. ......+ ..+|++|+|+|++...+..+...+..+... + .|+++|+||+|....
T Consensus 87 df~-------~~~~~~l----~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-~----~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFT-------VEVERSL----RVLDGAVTVLDAQSGVEPQTETVWRQATTY-G----VPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCC-------HHHHHHH----HHCSEEEEEEETTTBSCHHHHHHHHHHHHT-T----CCEEEEEECTTSTTC
T ss_pred chH-------HHHHHHH----HHCCEEEEEECCCCCCcHHHHHHHHHHHHc-C----CCEEEEEECCCcccc
Confidence 754 2233333 346999999999988888887777766542 2 479999999999863
No 167
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.43 E-value=4.4e-13 Score=113.96 Aligned_cols=116 Identities=21% Similarity=0.117 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK 95 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (253)
...+|+++|.+|+|||||++.+++........ .|............+. .+.+|||||...+. .
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~ 218 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYI----PTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-----------R 218 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCC----CCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-----------T
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccC----CcccceeEEEEEECCEEEEEEEEeCCCchhhh-----------H
Confidence 34899999999999999999999765422211 1221212212223444 45599999985432 3
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++..+|++++|+|++++.+..+. .++..+....+ ..|+++|+||+|...
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 273 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHT
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccc
Confidence 334566788999999999865544442 34455555432 358999999999865
No 168
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.42 E-value=1.6e-12 Score=121.01 Aligned_cols=122 Identities=20% Similarity=0.246 Sum_probs=80.3
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhC---CCCccccC-------------CCCccceeeeeeeeEeeCCeEEEEEeCC
Q 025391 14 SPSNGERTVVLVGRTGNGKSATGNSILG---RRAFKSRA-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTP 77 (253)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTl~n~l~g---~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtp 77 (253)
......++|+|+|+.|+|||||+++|+. ........ ...+.|.......+. +.+..+++||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~-~~~~~i~liDTP 85 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF-WKDHRINIIDTP 85 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEE-ETTEEEEEECCC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEE-ECCeEEEEEECc
Confidence 3445568999999999999999999983 21000000 022344444444444 467899999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
|+.++. ....+. +..+|++|+|+|++...+......+..+... ..|+++|+||+|....
T Consensus 86 G~~df~-------~~~~~~----l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 86 GHVDFT-------IEVERS----MRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGA 144 (691)
T ss_dssp SSTTCH-------HHHHHH----HHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTC
T ss_pred CccchH-------HHHHHH----HHHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCcccC
Confidence 997643 222333 3446999999999988888887777665542 2479999999999864
No 169
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.42 E-value=2.2e-12 Score=117.11 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=87.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcc----------------c----cCCCCccceeeeeeeeEeeCCeEEEEEeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFK----------------S----RASSSGVTSTCEMQRTVLKDGQVVNVIDTP 77 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~----------------~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtp 77 (253)
+.++|+|+|+.++|||||..+|+-..... . .....++|.......+. +++..++|||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP-YRDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE-ETTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE-ECCEEEEEEeCC
Confidence 45899999999999999999986322100 0 01134566666666565 589999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 025391 78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (253)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~ 153 (253)
|+.||. .+..+++..+ |++|+|+|+..........+++.+.+. + .|.++++||+|....+
T Consensus 109 GHvDF~-------~Ev~raL~~~----DgAvlVvda~~GV~~qT~~v~~~a~~~-~----lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 109 GHQDFS-------EDTYRVLTAV----DSALVVIDAAKGVEAQTRKLMDVCRMR-A----TPVMTFVNKMDREALH 168 (548)
T ss_dssp CGGGCS-------HHHHHHHHSC----SEEEEEEETTTBSCHHHHHHHHHHHHT-T----CCEEEEEECTTSCCCC
T ss_pred CcHHHH-------HHHHHHHHhc----CceEEEeecCCCcccccHHHHHHHHHh-C----CceEEEEecccchhcc
Confidence 999987 4555555554 899999999999999999888877764 3 4799999999997543
No 170
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.42 E-value=2.1e-12 Score=120.21 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCc--------------------------------------------
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-------------------------------------------- 53 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~-------------------------------------------- 53 (253)
..++|+|+|.+++|||||+|+|+|...++.+.....
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 347999999999999999999999876444321100
Q ss_pred -----cceeeeeeeeEeeCCeEEEEEeCCCCCCCCC--CcHHHHHHHHHHHHhhc-CCccEEEEEEeCCCCCCHHHH-HH
Q 025391 54 -----VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEE-AA 124 (253)
Q Consensus 54 -----~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~v~d~~~~~~~~~~-~~ 124 (253)
++.......+.......++||||||+..... ........+...+..+. ..+|++|+|+|++..+...+. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 0000001111122345689999999987432 12223334444443333 577999999999877776664 45
Q ss_pred HHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 125 LHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 125 l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++.+.. ...|+++|+||+|.+.
T Consensus 210 l~~L~~-----~g~pvIlVlNKiDlv~ 231 (772)
T 3zvr_A 210 AKEVDP-----QGQRTIGVITKLDLMD 231 (772)
T ss_dssp HHHHCT-----TCSSEEEEEECTTSSC
T ss_pred HHHHHh-----cCCCEEEEEeCcccCC
Confidence 544433 1358999999999986
No 171
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.41 E-value=4.1e-13 Score=117.80 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=80.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC-------Ccccc--C------CCCccceeeeeeeeEeeCCeEEEEEeCCCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR-------AFKSR--A------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~-------~~~~~--~------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (253)
+.++|+++|+.|+|||||+++|++.. .+... . ...+.|.......+. ..+..+.+|||||+.++
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSGGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec-cCCeEEEEEECCChHHH
Confidence 45899999999999999999998731 00000 0 012344444333333 35688999999998642
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCe-EEEEEeCCCCCC
Q 025391 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELE 151 (253)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~-~ivv~~k~D~~~ 151 (253)
.......+..+|++|+|+|+++........++..+... + .| +++++||+|...
T Consensus 89 -----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 89 -----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFMNKVDMVD 142 (405)
T ss_dssp -----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGCC
T ss_pred -----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEEECccccC
Confidence 23333445688999999999888887777777665542 3 24 889999999984
No 172
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.41 E-value=3.7e-13 Score=123.04 Aligned_cols=116 Identities=17% Similarity=0.227 Sum_probs=79.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-----------------eCCeEEEEEeCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------KDGQVVNVIDTPGLF 80 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtpG~~ 80 (253)
+.++|+|+|++|+|||||+++|++..... ..+++.|.......... .....+++|||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 34799999999999999999999764321 11223332221111110 112269999999998
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++... ....+..+|++|+|+|+++.+.+.....+..+... + .|+++++||+|...
T Consensus 82 ~F~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-~----vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFTTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRMY-R----TPFVVAANKIDRIH 136 (594)
T ss_dssp CCTTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGST
T ss_pred HHHHH-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-C----CeEEEEeccccccc
Confidence 76532 12345678999999999988888887777766542 2 47999999999974
No 173
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.40 E-value=6.7e-14 Score=125.17 Aligned_cols=115 Identities=16% Similarity=0.228 Sum_probs=81.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
+.++|+++|+.++|||||+++|++...... ...++|.......+. ..+..+++|||||+.++... .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~--e~~GIT~~i~~~~v~-~~~~~i~~iDTPGhe~f~~~-----------~ 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASG--EAGGITQHIGAYHVE-TENGMITFLDTPGHAAFTSM-----------R 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBT--TBCCCCCCSSCCCCC-TTSSCCCEECCCTTTCCTTS-----------B
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccc--cCCCeeEeEEEEEEE-ECCEEEEEEECCCcHHHHHH-----------H
Confidence 457999999999999999999987543221 123444444444443 35678999999999776532 2
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+..+|++|+|+|+++...+.....+..+.. .+ .|+++++||+|...
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~-~~----vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKA-AQ----VPVVVAVNKIDKPE 117 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH-TT----CCEEEEEECSSSST
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHh-cC----ceEEEEEEeccccc
Confidence 244567899999999987766666666655443 22 47999999999974
No 174
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.40 E-value=6.5e-13 Score=104.44 Aligned_cols=117 Identities=21% Similarity=0.220 Sum_probs=71.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
..+|+|+|++|||||||++.|+|.........+ .+.......+. .++. .+.+|||||...... .
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t--~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~-----------~ 94 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST--IGVEFATRSIQ-VDGKTIKAQIWDTAGLERYRA-----------I 94 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCC--CSEEEEEEEEE-ETTEEEEEEEEEECSCCSSSC-----------C
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc--cceEEEEEEEE-ECCEEEEEEEEECCCCcchhh-----------h
Confidence 479999999999999999999987653222222 22222222233 3454 455799999865432 1
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+...+..++++++|+|.++..+... ..++..+.... ....++++++||.|...
T Consensus 95 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGG
T ss_pred hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccc
Confidence 2233456789999999874433222 22333333321 12358999999999853
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.39 E-value=1.2e-12 Score=116.59 Aligned_cols=117 Identities=19% Similarity=0.242 Sum_probs=76.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC-Cccc-------------cC---------------CCCccceeeeeeeeEeeCCe
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRR-AFKS-------------RA---------------SSSGVTSTCEMQRTVLKDGQ 69 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~-~~~~-------------~~---------------~~~~~t~~~~~~~~~~~~~~ 69 (253)
.++|+++|+.++|||||+|+|++.. .+.. +. ...++|.......+. ..+.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~-~~~~ 85 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPKY 85 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CSSE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe-cCCc
Confidence 4899999999999999999998641 1100 00 013445554444444 3677
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhcccccCeEEE
Q 025391 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ-------EEEAALHSLQTLFGKKIFDYMIV 142 (253)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~-------~~~~~l~~l~~~~g~~~~~~~iv 142 (253)
.+.+|||||+.+ +.......+..+|++|+|+|+++...+ .....+..+.. .+- ++++|
T Consensus 86 ~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~iiv 150 (458)
T 1f60_A 86 QVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLIV 150 (458)
T ss_dssp EEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEEE
T ss_pred eEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeEEE
Confidence 899999999753 334445566889999999999844322 33333333322 232 35899
Q ss_pred EEeCCCCCC
Q 025391 143 VFTGGDELE 151 (253)
Q Consensus 143 v~~k~D~~~ 151 (253)
|+||+|...
T Consensus 151 viNK~Dl~~ 159 (458)
T 1f60_A 151 AVNKMDSVK 159 (458)
T ss_dssp EEECGGGGT
T ss_pred EEEcccccc
Confidence 999999973
No 176
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.38 E-value=5.7e-12 Score=117.55 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=79.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc---CC-------------CCccceeeeeeeeEeeCC-------eEEEE
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR---AS-------------SSGVTSTCEMQRTVLKDG-------QVVNV 73 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~---~~-------------~~~~t~~~~~~~~~~~~~-------~~~~l 73 (253)
...++|+|+|+.|+|||||++.|+........ .. ..++|......... +.+ ..++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~-~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAF-WSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEE-ECCccccCCceeEEE
Confidence 45589999999999999999999753210000 00 12344444444443 244 78999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
|||||+.++. ..+..++..+|++|+|+|++..........+..+... ..|+++++||+|...
T Consensus 87 iDTPG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFT-----------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-----KVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchH-----------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEeCCCccc
Confidence 9999997643 2223334556999999999978777776666554432 247999999999875
No 177
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.38 E-value=6.8e-13 Score=117.46 Aligned_cols=118 Identities=24% Similarity=0.321 Sum_probs=73.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC-Ccccc----------------------------CCCCccceeeeeeeeEeeCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR-AFKSR----------------------------ASSSGVTSTCEMQRTVLKDG 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~-~~~~~----------------------------~~~~~~t~~~~~~~~~~~~~ 68 (253)
+.++|+++|+.|+|||||+++|++.. .+... ....++|.......+. ..+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~-~~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TKK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CSS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-cCC
Confidence 44899999999999999999998641 11000 0023455555444444 367
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccCeEE
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI 141 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~l~~l~~~~g~~~~~~~i 141 (253)
..+.+|||||+.++ .......+..+|++|+|+|+++. .....+..+..+.. ++. ++++
T Consensus 84 ~~~~iiDtpG~~~f-----------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~ii 148 (435)
T 1jny_A 84 YFFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLI 148 (435)
T ss_dssp CEEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCE
T ss_pred eEEEEEECCCcHHH-----------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEE
Confidence 88999999998652 23344566889999999999853 22233444433333 232 3689
Q ss_pred EEEeCCCCCC
Q 025391 142 VVFTGGDELE 151 (253)
Q Consensus 142 vv~~k~D~~~ 151 (253)
|++||+|...
T Consensus 149 vviNK~Dl~~ 158 (435)
T 1jny_A 149 VAVNKMDLTE 158 (435)
T ss_dssp EEEECGGGSS
T ss_pred EEEEcccCCC
Confidence 9999999975
No 178
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=3.3e-12 Score=111.74 Aligned_cols=125 Identities=15% Similarity=0.202 Sum_probs=69.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCC--CCccceeeeeeeeEeeCC--eEEEEEeCCCCCCCCCCcHH------
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--SSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEF------ 88 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~--~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~------ 88 (253)
.++++|+|+||+|||||+|+|+|......... ..+.+.. ....+....+ ..++++|+||+.... ....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~D~~~~g~~~-~~~~~~~~i~ 119 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKLTIVSTVGFGDQI-NKEDSYKPIV 119 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEEEEEEEECCCC-C-CHHHHSHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCccccccchhhhhhhhhcc-ccchhhhHHH
Confidence 35599999999999999999999853211111 1122221 2222222122 278999999997532 2211
Q ss_pred --HHHHHHHHHHhh---------cC--CccE-EEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 89 --VGKEIVKCIGMA---------KD--GIHA-VLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 89 --~~~~~~~~~~~~---------~~--~~~~-~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+...+...+... .+ .+|+ ++||.|++..++..+..+++.+. . ..|+|+|+||+|.+.
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~--~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----S--KVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----S--CSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----h--CCCEEEEEcchhccc
Confidence 112222223221 11 1355 55566777788888877766654 1 248999999999997
No 179
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=3.6e-12 Score=111.30 Aligned_cols=91 Identities=14% Similarity=0.062 Sum_probs=45.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeE--------------------eeC---CeEEEEEeC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV--------------------LKD---GQVVNVIDT 76 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~--------------------~~~---~~~~~liDt 76 (253)
++|+|+|.+|+|||||+|+|+|... .... ..+.|......... ... ...+.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~~-~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV-EIAN-YPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cccC-CCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 4799999999999999999999862 1111 11122222221100 012 247899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC
Q 025391 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR 116 (253)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~ 116 (253)
||+....+.. +.+...+...+..+|++++|+|+++.
T Consensus 79 pG~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhh----hhHHHHHHHHHhcCCEEEEEEecccc
Confidence 9996532211 11222222445788999999999754
No 180
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.36 E-value=3.2e-12 Score=116.68 Aligned_cols=119 Identities=22% Similarity=0.260 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc-------------CCCCccceeeeeeeeEee--C--CeEEEEEeCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLF 80 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtpG~~ 80 (253)
..++|+|+|+.|+|||||+++|++....... ....++|.........+. + ...+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3479999999999999999999753210000 001234443333333221 1 2578899999997
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
++. .++. .++..+|++|+|+|+++..+......+...... ..|+++++||+|....
T Consensus 85 dF~-------~ev~----r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 85 DFS-------YEVS----RALAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVIIPVINKIDLPSA 140 (600)
T ss_dssp GGH-------HHHH----HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEEEEEEECTTSTTC
T ss_pred hHH-------HHHH----HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCEEEEEeccCcccc
Confidence 643 2222 333566999999999988888776665544432 2479999999999753
No 181
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.36 E-value=3.4e-12 Score=116.59 Aligned_cols=118 Identities=21% Similarity=0.212 Sum_probs=70.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc-------------CCCCccceeeeeeeeEee--C--CeEEEEEeCCCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD 81 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtpG~~~ 81 (253)
.++|+|+|+.|+|||||+++|+........ ....++|.......+.+. + +..+++|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 479999999999999999999863211000 012344544433334332 1 35789999999976
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
+. .++.+. +..+|++|+|+|+++..+......+...... ..|+++|+||+|....
T Consensus 84 F~-------~ev~~~----l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 84 FS-------YEVSRS----LAACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPAA 138 (599)
T ss_dssp GH-------HHHHHH----HHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTTC
T ss_pred HH-------HHHHHH----HHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEeeeccCcccc
Confidence 43 233333 3445899999999888887776655444332 2489999999999753
No 182
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.36 E-value=2.8e-12 Score=111.01 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=73.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
+|+++|+.++|||||+++|+ ..++|.......+. ..+..+.+|||||+.++. ......
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~-~~~~~i~iiDtPGh~~f~-----------~~~~~~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNND-KEGRNMVFVDAHSYPKTL-----------KSLITA 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEEC-SSSSEEEEEECTTTTTCH-----------HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEe-cCCeEEEEEECCChHHHH-----------HHHHHH
Confidence 89999999999999999998 12334444444444 356789999999997642 222223
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEe-CCCCCC
Q 025391 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDELE 151 (253)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~-k~D~~~ 151 (253)
+..+|++|+|+| +.......+..+..+.. ++.+ .+++++| |+|. .
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i~---~~ivvvNNK~Dl-~ 126 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDL-LGFK---HGIIALTRSDST-H 126 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTCC---EEEEEECCGGGS-C
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCCC---eEEEEEEeccCC-C
Confidence 357799999999 77777777777665544 3422 3488888 9999 5
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.35 E-value=7.5e-12 Score=105.47 Aligned_cols=128 Identities=21% Similarity=0.186 Sum_probs=64.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCC-----CccceeeeeeeeE-e--eCCeEEEEEeCCCCCCCCCCc---
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMQRTV-L--KDGQVVNVIDTPGLFDFSAGS--- 86 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~-----~~~t~~~~~~~~~-~--~~~~~~~liDtpG~~~~~~~~--- 86 (253)
-.++|+|+|++|+|||||+|+|+|...++....+ ...+.......+. . .....+++|||||+.......
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3489999999999999999999997333221110 0011111111111 1 123578999999995332100
Q ss_pred HHHHHHHH----HHHHhh---------cCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 87 EFVGKEIV----KCIGMA---------KDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 87 ~~~~~~~~----~~~~~~---------~~~~~~~l~v~d~~~-~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
..+...+. ..+... ...+++++|+++++. .+++.+..+++.+ .. ..++++|+||.|...
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l----~~--~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTLT 169 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH----TT--TSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH----Hh--cCCEEEEEEeCCCCC
Confidence 11111111 222211 123567888888865 4998875444333 22 247999999999986
No 184
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.35 E-value=3.4e-12 Score=115.81 Aligned_cols=119 Identities=16% Similarity=0.132 Sum_probs=72.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeee----eeEe---eCCeEEEEEeCCCCCCCCCCcHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ----RTVL---KDGQVVNVIDTPGLFDFSAGSEFV 89 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~----~~~~---~~~~~~~liDtpG~~~~~~~~~~~ 89 (253)
....+|+|+|.+|||||||+|+|++.........+.+.+...... .+.. ..+..+.+|||||.........
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~-- 116 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ-- 116 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH--
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH--
Confidence 345899999999999999999999876432222222222221100 1111 1257899999999765443211
Q ss_pred HHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.++..+|++|+|+|+++. .....++..+....+ ..|+++|+||+|...
T Consensus 117 ---------~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 117 ---------FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGG---KSPVIVVMNKIDENP 164 (535)
T ss_dssp ---------HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSS---SCCEEEEECCTTTCT
T ss_pred ---------HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCC---CCCEEEEEECCCccc
Confidence 223457999999998733 233556666666532 358999999999875
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.33 E-value=5.6e-12 Score=117.03 Aligned_cols=116 Identities=29% Similarity=0.298 Sum_probs=80.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcc--ccCC--------------CCccceeeeeeeeEeeCCeEEEEEeCCCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFK--SRAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~--~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (253)
+..+|+|+|++|+|||||+++|++..... .+.. ..+++.......+. +.+..+++|||||+.+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~-~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-FRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-ETTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe-eCCEEEEEEeCCCccc
Confidence 45799999999999999999999543210 0000 11334433333333 4678999999999865
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
+. ..... ++..+|++++|+|+++.++.....+++.+... + .|+++++||+|..
T Consensus 87 f~-------~~~~~----~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~----ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FV-------GEIRG----ALEAADAALVAVSAEAGVQVGTERAWTVAERL-G----LPRMVVVTKLDKG 139 (665)
T ss_dssp GH-------HHHHH----HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCEEEEEECGGGC
T ss_pred hH-------HHHHH----HHhhcCcEEEEEcCCcccchhHHHHHHHHHHc-c----CCEEEEecCCchh
Confidence 32 22223 33455899999999988998888777776652 3 4799999999987
No 186
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.31 E-value=1.5e-11 Score=118.23 Aligned_cols=119 Identities=16% Similarity=0.202 Sum_probs=79.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCC------cc--------ccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRA------FK--------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (253)
.+.++|+++|+.++|||||++.|++... +. ......++|.......+. ..+..+.+|||||+.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-~~~~kI~IIDTPGHe-- 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-TPTRHYAHVDCPGHA-- 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-CSSCEEEEEECCCHH--
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-CCCEEEEEEECCChH--
Confidence 3458999999999999999999987410 00 001123444443333333 256899999999973
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
.+.......+..+|++|+|+|+++.........+..+.. .+- ++++|++||+|...
T Consensus 371 ---------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-lgI---P~IIVVINKiDLv~ 426 (1289)
T 3avx_A 371 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-VGV---PYIIVFLNKCDMVD 426 (1289)
T ss_dssp ---------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-HTC---SCEEEEEECCTTCC
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-cCC---CeEEEEEeeccccc
Confidence 344555556788999999999988777777777765554 232 23789999999985
No 187
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.30 E-value=4.3e-12 Score=113.25 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=67.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCC-cc-------------cc---------------CCCCccceeeeeeeeEeeC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRA-FK-------------SR---------------ASSSGVTSTCEMQRTVLKD 67 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~-~~-------------~~---------------~~~~~~t~~~~~~~~~~~~ 67 (253)
.+.++|+++|+.++|||||++.|++... +. .+ ....++|.......+. ..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~-~~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE-TE 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-CS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe-cC
Confidence 3457999999999999999999974221 00 00 0023455555544444 36
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhcccccCeE
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFDYM 140 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-------~~~~~~l~~l~~~~g~~~~~~~ 140 (253)
+..+.+|||||+.++. ......+..+|++|+|+|+++... ...+..+..+.. .|- +++
T Consensus 120 ~~~~~iiDtPGh~~f~-----------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~i 184 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYV-----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHL 184 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSE
T ss_pred CeEEEEEECCCcHHHH-----------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEE
Confidence 7899999999986542 333344578899999999986531 233344433322 232 248
Q ss_pred EEEEeCCCCCC
Q 025391 141 IVVFTGGDELE 151 (253)
Q Consensus 141 ivv~~k~D~~~ 151 (253)
+|++||+|...
T Consensus 185 ivviNK~Dl~~ 195 (467)
T 1r5b_A 185 VVVINKMDEPS 195 (467)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECccCCC
Confidence 99999999964
No 188
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.29 E-value=2e-11 Score=114.24 Aligned_cols=120 Identities=27% Similarity=0.340 Sum_probs=85.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccc----------------cCCCCccceeeeeeeeEee------CCeEEEEE
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLK------DGQVVNVI 74 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~~~------~~~~~~li 74 (253)
++.++|+|||+.++|||||..+|+-...... .....++|......+..+. ++..+++|
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 4458999999999999999999863321000 0112355665555555432 24689999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 025391 75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (253)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~ 152 (253)
||||+.||. .+..+++..+ |++|+|+|+..........+++...+. + .|.++++||+|....
T Consensus 91 DTPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~-~----lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY-G----VPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH-T----CCEEEEEECSSSTTC
T ss_pred eCCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc-C----CCeEEEEccccccCc
Confidence 999999987 5666777666 899999999999999999888887764 3 479999999999753
No 189
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.29 E-value=8e-12 Score=118.70 Aligned_cols=117 Identities=24% Similarity=0.290 Sum_probs=77.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccC--------------CCCccceeeeeeeeEee---------------CC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK---------------DG 68 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~~ 68 (253)
..++|+|+|+.|+|||||+++|++........ ...++|.........+. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 44799999999999999999998652111100 01223333322222221 25
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
..+++|||||+.++. .+ +..++..+|++|+|+|+++..+......+..+... ..|+++++||+|
T Consensus 98 ~~i~liDTPG~~df~-------~~----~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-----~~p~ilviNK~D 161 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS-------SE----VTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE-----RIKPVVVINKVD 161 (842)
T ss_dssp EEEEEECCCCCCSSC-------HH----HHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCEEEEEEECHH
T ss_pred ceEEEEECcCchhhH-------HH----HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCeEEEEECCC
Confidence 689999999998865 22 22334567999999999988888876665544332 247999999999
Q ss_pred CC
Q 025391 149 EL 150 (253)
Q Consensus 149 ~~ 150 (253)
..
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 86
No 190
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.28 E-value=2.4e-13 Score=124.46 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=61.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc-----------------------------CCCCccceeeeeeeeEeeC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLKD 67 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 67 (253)
.+.++|+++|++++|||||+|.|++....... ....++|.......+.. .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 34578999999999999999999753210000 00224555555444443 5
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhcccccCeE
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-----F--SQEEEAALHSLQTLFGKKIFDYM 140 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-----~--~~~~~~~l~~l~~~~g~~~~~~~ 140 (253)
+..+.||||||+.++.. .....+..+|++|+|+|++.. + .......+..+.. +|. +++
T Consensus 254 ~~~i~iiDTPGh~~f~~-----------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~i 318 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFIS-----------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SEI 318 (592)
T ss_dssp -----CCEEESSSEEEE-----------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CCE
T ss_pred CeEEEEEECCChHHHHH-----------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeE
Confidence 67899999999875431 112334567999999999753 2 5555556555544 342 248
Q ss_pred EEEEeCCCCCC
Q 025391 141 IVVFTGGDELE 151 (253)
Q Consensus 141 ivv~~k~D~~~ 151 (253)
+||+||+|...
T Consensus 319 IvviNKiDl~~ 329 (592)
T 3mca_A 319 VVSVNKLDLMS 329 (592)
T ss_dssp EEEEECGGGGT
T ss_pred EEEEecccccc
Confidence 99999999874
No 191
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.24 E-value=5.3e-12 Score=116.63 Aligned_cols=117 Identities=19% Similarity=0.309 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccc---cCC-------------CCccceeeeeeeeEeeCCeEEEEEeCCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKS---RAS-------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~---~~~-------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (253)
++|+|+|+.++|||||..+|+....... ... ..++|......++. +++..+++|||||+.||.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-WENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB-CSSCBCCCEECCCSSSTH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEE-ECCEEEEEEECCCcHHHH
Confidence 6899999999999999999863221100 000 11456665555555 478899999999999976
Q ss_pred CCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 025391 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~~~ 153 (253)
.+..+.+ .-+|++|+|+|+..........+++.+.+. + .|.++++||+|....+
T Consensus 82 -------~Ev~raL----~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-~----lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 82 -------AEVYRSL----SVLDGAILLISAKDGVQAQTRILFHALRKM-G----IPTIFFINKIDQNGID 135 (638)
T ss_dssp -------HHHHHHH----TTCSEEECCEESSCTTCSHHHHHHHHHHHH-T----CSCEECCEECCSSSCC
T ss_pred -------HHHHHHH----HHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-C----CCeEEEEeccccccCC
Confidence 3444444 445999999999999999998888887765 3 3689999999997543
No 192
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.24 E-value=5.6e-11 Score=104.11 Aligned_cols=125 Identities=16% Similarity=0.133 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (253)
..|+|||++|||||||+++|++....... ....|.......+.......++++||||+.+.......+...+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~--~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~---- 231 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR---- 231 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH----
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccC--cccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH----
Confidence 45899999999999999999998542221 112233333333443223789999999996532111001111111
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
....++.+|+++|++ +-...+ ....+.+..+...-...|.++|+||+|...
T Consensus 232 ~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 232 HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 124678999999986 222222 222222222211112358899999999986
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.16 E-value=2.8e-11 Score=99.59 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=31.2
Q ss_pred CccEEEEEEeCCCC--CCHHH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 103 GIHAVLVVFSVRSR--FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 103 ~~~~~l~v~d~~~~--~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++|++|+|+|++++ .+... ..++..+..... ....|++||+||+|...
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGV 212 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccc
Confidence 57999999999865 55544 334444443311 12358999999999865
No 194
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.13 E-value=1.9e-10 Score=105.68 Aligned_cols=128 Identities=19% Similarity=0.162 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCc-cccCCCCccce------------eeeeee------------------------
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTS------------TCEMQR------------------------ 62 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~-~~~~~~~~~t~------------~~~~~~------------------------ 62 (253)
+.|+|||++|||||||+++|+|...+ ..|......+. ......
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999998644 23322111000 000000
Q ss_pred ---------------eEeeCCeEEEEEeCCCCCCCC--CCcHHHHHHHHHHHHhhcCCc-cEEEEEEeCCCCCCHHHHHH
Q 025391 63 ---------------TVLKDGQVVNVIDTPGLFDFS--AGSEFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEEEAA 124 (253)
Q Consensus 63 ---------------~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~l~v~d~~~~~~~~~~~~ 124 (253)
........+.++|.||+.... +-+......+...+..+...+ ..++++++.+ .+......
T Consensus 126 ~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~--~d~a~~~~ 203 (608)
T 3szr_A 126 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN--VDIATTEA 203 (608)
T ss_dssp HCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESS--SCTTTCHH
T ss_pred cCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecc--chhccHHH
Confidence 001123468999999987532 222334466777776654544 4445555543 33223334
Q ss_pred HHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 125 LHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 125 l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
++.+...-.. ..++++|+||.|.+.
T Consensus 204 l~la~~v~~~--g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 204 LSMAQEVDPE--GDRTIGILTKPDLVD 228 (608)
T ss_dssp HHHHHHHCSS--CCSEEEEEECGGGSS
T ss_pred HHHHHHHhhc--CCceEEEecchhhcC
Confidence 5555554222 247999999999985
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.11 E-value=2.1e-10 Score=98.79 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
...++|+|+|.+|+|||||++.|++
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4558999999999999999999863
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=7.5e-11 Score=101.32 Aligned_cols=90 Identities=16% Similarity=0.016 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC----------------CeEEEEEeCCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS 83 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~~~~ 83 (253)
.+|+|||.+|+|||||+|+|++.... ... ..++|.......+...+ +..+.+|||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~-v~~-~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE-AAN-YPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc-ccC-CCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 68999999999999999999987621 111 11223222222222111 2479999999997542
Q ss_pred CCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC
Q 025391 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS 115 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~ 115 (253)
+..+. +...+...++.+|++++|+|+++
T Consensus 81 ~~~~g----l~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEG----LGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGG----GTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccch----HHHHHHHHHHhcCeEEEEEecCC
Confidence 11111 11111123357799999999874
No 197
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.09 E-value=1.4e-10 Score=100.54 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=47.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC----------------CeEEEEEeCCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLF 80 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~ 80 (253)
....+|+|||.+|+|||||+|+|+|.... .. ...++|.......+...+ ...+.+|||||+.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~-~~-~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQAS-AE-NFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcc-cc-CCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 34579999999999999999999998641 11 111223222222222111 2358999999997
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC
Q 025391 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS 115 (253)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~ 115 (253)
...+..+. +...+...+..+|++++|+|+++
T Consensus 98 ~~as~~~g----lg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 98 KGAHNGQG----LGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccchhhH----HHHHHHHHHHhcCeEEEEEecCC
Confidence 64432221 11122333467799999999863
No 198
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.06 E-value=6.3e-10 Score=101.19 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=63.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCC-ccccCCCCccceeeeeeeeE--eeCCeEEEEEeCCCCCCCCC-CcHHHHH
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLFDFSA-GSEFVGK 91 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtpG~~~~~~-~~~~~~~ 91 (253)
..+..+|+|+|.+|+|||||+|.|+|... +..+..+.+.|.....+..+ ...+..+.|+||||+.+... .......
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence 44568999999999999999999999864 22221122333333222211 12567899999999987543 2221112
Q ss_pred HHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 025391 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130 (253)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~ 130 (253)
.++-....+ + ++|+++...++..+...+..+.+
T Consensus 115 ~fala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 115 IFALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence 111111111 1 45555555888888666655443
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.04 E-value=3e-10 Score=98.02 Aligned_cols=90 Identities=20% Similarity=0.149 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe--------------------eCCeEEEEEeCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------KDGQVVNVIDTPGL 79 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~~~~~~liDtpG~ 79 (253)
++|+|||.+|+|||||+|+|++.... ... ....|.......... ..+..+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~-v~~-~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANAL-AAN-YPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTT-CSS-CCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCc-ccC-CCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 57999999999999999999986421 111 111222222221111 12457999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC
Q 025391 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS 115 (253)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~ 115 (253)
....+..+.+...+... ...+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~----ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAH----IREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHH----HHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHH----HHhCCEEEEEEECCC
Confidence 86543322222333322 356699999999874
No 200
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.04 E-value=6.8e-12 Score=108.57 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=67.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcc----c-cCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHH-HHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFK----S-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFV-GKE 92 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~----~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-~~~ 92 (253)
..+|+++|.+|+|||||+|+|+|..... . .....+.|...... . -+..+.++||||+.+...-.+.. ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~--~--~~~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDI--P--LDEESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEE--E--SSSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEE--E--ecCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 3689999999999999999999863211 1 11122333333222 2 12238999999998754222222 122
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
+..++. ...++.+++++++...+-..+...+..+. + ...|+++++||.|.+.
T Consensus 236 l~~~~~--~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~--~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 236 LKLITP--TKEIKPMVFQLNEEQTLFFSGLARFDYVS---G--GRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHHSC--SSCCCCEEEEECTTEEEEETTTEEEEEEE---S--SSEEEEEEECTTSCEE
T ss_pred HHHhcc--ccccCceEEEEcCCCEEEEcceEEEEEec---C--CCceEEEEecCccccc
Confidence 222221 25678889998874221111111111111 1 1247999999999986
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.03 E-value=3.7e-10 Score=96.75 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=37.5
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeC
Q 025391 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (253)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k 146 (253)
.+..+++|||||+.++. .. ....+|++|+|++++..-. ...+.. ... ..|.++|+||
T Consensus 147 ~~~~i~liDTpG~~~~~-------~~-------~~~~aD~vl~Vvd~~~~~~---~~~l~~--~~~----~~p~ivv~NK 203 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSE-------TE-------VARMVDCFISLQIAGGGDD---LQGIKK--GLM----EVADLIVINK 203 (341)
T ss_dssp TTCSEEEEEEECCTTHH-------HH-------HHTTCSEEEEEECC---------CCCCH--HHH----HHCSEEEECC
T ss_pred cCCCEEEEeCCCccchH-------HH-------HHHhCCEEEEEEeCCccHH---HHHHHH--hhh----cccCEEEEEC
Confidence 46789999999986521 11 1267899999999863211 111110 111 1368999999
Q ss_pred CCCCC
Q 025391 147 GDELE 151 (253)
Q Consensus 147 ~D~~~ 151 (253)
+|...
T Consensus 204 ~Dl~~ 208 (341)
T 2p67_A 204 DDGDN 208 (341)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 99975
No 202
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.03 E-value=2.3e-09 Score=95.97 Aligned_cols=122 Identities=15% Similarity=0.157 Sum_probs=71.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh------CCCCccccCCCCccce-----------eeeeeee--------------E-
Q 025391 17 NGERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSSGVTS-----------TCEMQRT--------------V- 64 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~------g~~~~~~~~~~~~~t~-----------~~~~~~~--------------~- 64 (253)
.+..+|+|+|.+|+||||+++.|+ |..+.....++..... ...+... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345789999999999999999999 7654322221111000 0000000 0
Q ss_pred -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCe-EEE
Q 025391 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIV 142 (253)
Q Consensus 65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~-~iv 142 (253)
...+.+++||||||.... ......++...... ..||.+++|+|++...+ .....+.+.+. .| .+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~gv 245 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVASV 245 (504)
T ss_dssp HHHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCCE
T ss_pred HHHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceEE
Confidence 015678999999998752 22333444333322 26799999999976554 22333333332 24 489
Q ss_pred EEeCCCCCC
Q 025391 143 VFTGGDELE 151 (253)
Q Consensus 143 v~~k~D~~~ 151 (253)
|+||+|...
T Consensus 246 VlNK~D~~~ 254 (504)
T 2j37_W 246 IVTKLDGHA 254 (504)
T ss_dssp EEECTTSCC
T ss_pred EEeCCcccc
Confidence 999999875
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.03 E-value=2.3e-10 Score=98.37 Aligned_cols=24 Identities=29% Similarity=0.111 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
+...|+|+|++|||||||+|.|+|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 358999999999999999999997
No 204
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.98 E-value=1.2e-09 Score=94.91 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=58.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeC----------------CeEEEEEeCCCC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGL 79 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~ 79 (253)
.....+|+|||+||||||||+|+|+|........ ..++|.......+...+ +..+.+|||||+
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~-~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPAN-YPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTC-CSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccC-CCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 3455899999999999999999999965412221 11223322222222211 135789999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC
Q 025391 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS 115 (253)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~ 115 (253)
....+..+.+...+. .....+|++++|+++..
T Consensus 96 ~~~~s~~e~L~~~fl----~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFL----SHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHH----HHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHH----HHHHHHHHHHHHHhccc
Confidence 865443332222222 23356799999999753
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.98 E-value=6.1e-12 Score=108.93 Aligned_cols=122 Identities=20% Similarity=0.184 Sum_probs=69.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC-----CCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (253)
..+|+++|.+|+|||||+|+|++. .....+. ..+.|....... -+..+.++||||+.+...-......+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~-~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSY-FPGTTLDMIEIP----LESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEE-CTTSSCEEEEEE----CSTTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecC-CCCeEEeeEEEE----eCCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 368999999999999999999987 2222222 223444333222 223479999999986542222221211
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 025391 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~~ 151 (253)
...+. ....+|++++++++...+-......+..+. + ...|+++++||.|.+.
T Consensus 237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~--~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---G--GRRSFVCYMANELTVH 288 (369)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---S--SSEEEEEEECTTSCEE
T ss_pred HHHHh-cccccCceEEEEcCCceEEECCEEEEEEcc---C--CCceEEEEecCCcccc
Confidence 11111 125679999999884221111111111111 1 1247999999999985
No 206
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.92 E-value=2.8e-09 Score=88.79 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=41.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE 87 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 87 (253)
....+|+++|.+|+|||||+|+|+|......+..+ +.|..... +. -+..+.++||||+........
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~-g~T~~~~~--~~--~~~~~~l~DtpG~~~~~~~~~ 183 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRP-GITTSQQW--VK--VGKELELLDTPGILWPKFEDE 183 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EE--ETTTEEEEECCCCCCSCCCCH
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCC-CeeeeeEE--EE--eCCCEEEEECcCcCCCCCCCH
Confidence 34579999999999999999999998764444322 34443322 21 245789999999987655444
No 207
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.89 E-value=1.1e-08 Score=89.38 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=69.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
...|+|+|+||||||||+|.|+|...+..+....+.+.......+.. .....++++|+||+...... . .++...+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~---~-~~~L~~~ 144 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFP---P-DTYLEKM 144 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCC---H-HHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHH---H-HHHHHHc
Confidence 35899999999999999999999765544433221111000011111 12236899999998642111 1 2222222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
. ....+.+++ ++.+ +.......+.+.+... + .|+++|.|+.|.+
T Consensus 145 ~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-~----~p~~lV~tkpdll 188 (413)
T 1tq4_A 145 K--FYEYDFFII-ISAT-RFKKNDIDIAKAISMM-K----KEFYFVRTKVDSD 188 (413)
T ss_dssp T--GGGCSEEEE-EESS-CCCHHHHHHHHHHHHT-T----CEEEEEECCHHHH
T ss_pred C--CCccCCeEE-eCCC-CccHHHHHHHHHHHhc-C----CCeEEEEecCccc
Confidence 1 223345554 6765 4566666666666553 2 4899999998876
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.89 E-value=9.3e-10 Score=94.06 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
.+...|+|+|+||||||||+|.|+|
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999984
No 209
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.89 E-value=4e-09 Score=86.51 Aligned_cols=128 Identities=14% Similarity=0.039 Sum_probs=69.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh-----CCCCccccCCCCcccee----------eeeeee------------------
Q 025391 17 NGERTVVLVGRTGNGKSATGNSIL-----GRRAFKSRASSSGVTST----------CEMQRT------------------ 63 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~-----g~~~~~~~~~~~~~t~~----------~~~~~~------------------ 63 (253)
.....++++|+.|+|||||++.|+ |..+......+...... ......
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 345789999999999999999998 66553333222111000 000000
Q ss_pred ------------EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHH-HHHHHHH
Q 025391 64 ------------VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQT 130 (253)
Q Consensus 64 ------------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~l~~l~~ 130 (253)
....+..+++|||||..+.. ....+...+...+.. +++++++|+....+..+.. .......
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~-----~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~ 165 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETF-----LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL 165 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH-----HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchh-----hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence 00012378999999985311 001111122223345 8999999887566655522 1111111
Q ss_pred HhcccccCeEEEEEeCCCCCC
Q 025391 131 LFGKKIFDYMIVVFTGGDELE 151 (253)
Q Consensus 131 ~~g~~~~~~~ivv~~k~D~~~ 151 (253)
... ....|+++|+||+|...
T Consensus 166 ~~~-~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 166 IDL-RLGATTIPALNKVDLLS 185 (262)
T ss_dssp HHH-HHTSCEEEEECCGGGCC
T ss_pred Hhc-ccCCCeEEEEecccccc
Confidence 111 11247999999999986
No 210
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.81 E-value=3.7e-08 Score=82.89 Aligned_cols=127 Identities=16% Similarity=0.110 Sum_probs=70.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccC------CCCcc-----------ceeeeeeeeE----------------
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGV-----------TSTCEMQRTV---------------- 64 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~------~~~~~-----------t~~~~~~~~~---------------- 64 (253)
+...|+|+|+||||||||++.|+|...+..+. ..... .....+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998654322211 10000 0001111000
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH-hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEE
Q 025391 65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 143 (253)
Q Consensus 65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv 143 (253)
...+..+.++||+|........-......+..+. .....|+.+++++|++.... ....+..+.+..| .++|+
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~-----~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVG-----LTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHC-----CSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcC-----CcEEE
Confidence 0123457799999986432111111122333333 33456888888999874533 2333444444333 48999
Q ss_pred EeCCCCCC
Q 025391 144 FTGGDELE 151 (253)
Q Consensus 144 ~~k~D~~~ 151 (253)
+||.|...
T Consensus 254 vTh~d~~a 261 (304)
T 1rj9_A 254 VTKLDGTA 261 (304)
T ss_dssp EECTTSSC
T ss_pred EECCcccc
Confidence 99998764
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.78 E-value=6e-08 Score=85.24 Aligned_cols=122 Identities=15% Similarity=0.109 Sum_probs=70.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh------CCCCccccCCCCcc-----------ceeeeeeeeE--------------e-
Q 025391 18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSSGV-----------TSTCEMQRTV--------------L- 65 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~------g~~~~~~~~~~~~~-----------t~~~~~~~~~--------------~- 65 (253)
++..|+++|++|+||||++..|+ |..+.....++... ......+... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999987 44432211111100 0000000000 0
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEE
Q 025391 66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (253)
Q Consensus 66 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~ 144 (253)
..+.++++|||||.... ......++...... ..||.+++|+|++...+ .....+.+.+.. ....||+
T Consensus 179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~--~~pd~vlLVvDA~~gq~--a~~~a~~f~~~~-----~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNV--IHPHEVILVIDGTIGQQ--AYNQALAFKEAT-----PIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGGGG--HHHHHHHHHHSC-----TTEEEEE
T ss_pred HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHh--hcCceEEEEEeCCCchh--HHHHHHHHHhhC-----CCeEEEE
Confidence 13468999999997642 23344555444332 35789999999874322 222333333322 3578999
Q ss_pred eCCCCCC
Q 025391 145 TGGDELE 151 (253)
Q Consensus 145 ~k~D~~~ 151 (253)
||.|...
T Consensus 247 TKlD~~~ 253 (443)
T 3dm5_A 247 TKLDGSA 253 (443)
T ss_dssp ECCSSCS
T ss_pred ECCCCcc
Confidence 9999874
No 212
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.73 E-value=7.1e-09 Score=82.79 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..++|+|+|.+|+|||||++.|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999865
No 213
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.70 E-value=1.7e-08 Score=89.63 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=70.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccC------CCCcc-------c----eeeeeeeeE---------------
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGV-------T----STCEMQRTV--------------- 64 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~------~~~~~-------t----~~~~~~~~~--------------- 64 (253)
.....|+|+|+||+|||||++.|+|...+..+. ..... . ....+....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 345789999999999999999998754322211 11000 0 000011000
Q ss_pred -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH---Hhh-cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCe
Q 025391 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI---GMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139 (253)
Q Consensus 65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~ 139 (253)
...+.+++++||+|.... ......++...+ ... ...|+-++||+|++... .....++.+.+.++ .
T Consensus 371 a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~-----i 440 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVG-----L 440 (503)
T ss_dssp HHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTC-----C
T ss_pred HHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcC-----C
Confidence 013457889999998643 233333443332 222 23478899999986332 22333444444433 4
Q ss_pred EEEEEeCCCCCC
Q 025391 140 MIVVFTGGDELE 151 (253)
Q Consensus 140 ~ivv~~k~D~~~ 151 (253)
+.+|+||.|...
T Consensus 441 tgvIlTKLD~ta 452 (503)
T 2yhs_A 441 TGITLTKLDGTA 452 (503)
T ss_dssp SEEEEECGGGCS
T ss_pred CEEEEEcCCCcc
Confidence 778999999753
No 214
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.70 E-value=1.1e-08 Score=84.40 Aligned_cols=60 Identities=30% Similarity=0.416 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (253)
.+|+++|.+|+|||||+|+|+|......+.. .+.|..... + ..+..+.+|||||+.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~-~g~T~~~~~--~--~~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ-PGITKGIQW--F--SLENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCE--E--ECTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC-CCCccceEE--E--EeCCCEEEEECCCcccCcC
Confidence 5999999999999999999999876444332 233433321 1 1245789999999987654
No 215
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.67 E-value=2.1e-08 Score=88.28 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=67.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC------CccccCCCC----------------------c-cceee-ee--eeeEee
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRR------AFKSRASSS----------------------G-VTSTC-EM--QRTVLK 66 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~------~~~~~~~~~----------------------~-~t~~~-~~--~~~~~~ 66 (253)
...|+++|++|+||||+++.|++.. +......+. + .+... .. ..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998732 111110000 0 00000 00 001112
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc-CeEEEEEe
Q 025391 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF-DYMIVVFT 145 (253)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~-~~~ivv~~ 145 (253)
.+.++++|||||.... ......++.. + .....||.+++|+|++...+ .+..+. .|... . ..+.+|+|
T Consensus 179 ~~~D~vIIDT~G~~~~---~~~l~~~l~~-i-~~~~~~d~vllVvda~~g~~-----~~~~~~-~~~~~-~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE---EKGLLEEMKQ-I-KEITNPDEIILVIDGTIGQQ-----AGIQAK-AFKEA-VGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCSS---HHHHHHHHHH-T-TSSSCCSEEEEEEEGGGGGG-----HHHHHH-HHHTT-SCSCEEEEEE
T ss_pred hCCCEEEEcCCCCccc---cHHHHHHHHH-H-HHHhcCcceeEEeeccccHH-----HHHHHH-HHhhc-ccCCeEEEEe
Confidence 4568999999998642 2223333322 1 12236899999999864432 222222 23321 2 24899999
Q ss_pred CCCCCC
Q 025391 146 GGDELE 151 (253)
Q Consensus 146 k~D~~~ 151 (253)
|+|...
T Consensus 247 K~D~~~ 252 (432)
T 2v3c_C 247 KLDGSA 252 (432)
T ss_dssp CSSSCS
T ss_pred CCCCcc
Confidence 999864
No 216
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.67 E-value=2.6e-08 Score=87.42 Aligned_cols=124 Identities=18% Similarity=0.164 Sum_probs=70.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh------CCCCccccCCCC---------------ccceeeeee----------eeEe-
Q 025391 18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSS---------------GVTSTCEMQ----------RTVL- 65 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~------g~~~~~~~~~~~---------------~~t~~~~~~----------~~~~- 65 (253)
++..|+++|++|+||||++..|+ |..+.....+.. +........ ....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45789999999999999999987 433311111100 000000000 0000
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEE
Q 025391 66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (253)
Q Consensus 66 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~ 144 (253)
..+.+++++||||..... .......++....... .||.+++|+|+.... ......+.+.+.+ .+..||+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~gq--~a~~~a~~f~~~~-----~~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIGQ--KAYDLASRFHQAS-----PIGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGGG--GGHHHHHHHHHHC-----SSEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccch--HHHHHHHHHhccc-----CCcEEEE
Confidence 135689999999975411 1223445555544433 468999999986332 2233334444333 3588999
Q ss_pred eCCCCCC
Q 025391 145 TGGDELE 151 (253)
Q Consensus 145 ~k~D~~~ 151 (253)
||.|...
T Consensus 246 TKlD~~a 252 (433)
T 3kl4_A 246 TKMDGTA 252 (433)
T ss_dssp ECGGGCS
T ss_pred ecccccc
Confidence 9999864
No 217
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.63 E-value=7.4e-08 Score=80.96 Aligned_cols=125 Identities=17% Similarity=0.233 Sum_probs=70.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccC------CCCcc-------ce----eeeeeeeEe--------------
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGV-------TS----TCEMQRTVL-------------- 65 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~------~~~~~-------t~----~~~~~~~~~-------------- 65 (253)
.++..++|+|+||||||||++.|+|...+..+. ..... .. ...+.....
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 345789999999999999999998864322221 11000 00 011110000
Q ss_pred ---eCCeEEEEEeCCCCCCCCCCcHHHHHHH---HHHHHh-hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccC
Q 025391 66 ---KDGQVVNVIDTPGLFDFSAGSEFVGKEI---VKCIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD 138 (253)
Q Consensus 66 ---~~~~~~~liDtpG~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~ 138 (253)
..+....++||.|..... .....++ +.++.. ....|+-+++|+|++..++.... ++.+.+..|
T Consensus 178 ~~~~~~~d~~lldt~gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g----- 247 (302)
T 3b9q_A 178 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVG----- 247 (302)
T ss_dssp HHHHTTCSEEEECCCCCSSCC---HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTC-----
T ss_pred HHHHcCCcchHHhcCCCCcch---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcC-----
Confidence 012346789999986432 2222223 233332 33467777777778767765542 333433333
Q ss_pred eEEEEEeCCCCCC
Q 025391 139 YMIVVFTGGDELE 151 (253)
Q Consensus 139 ~~ivv~~k~D~~~ 151 (253)
.+++++||.|...
T Consensus 248 ~t~iiiThlD~~~ 260 (302)
T 3b9q_A 248 ITGLILTKLDGSA 260 (302)
T ss_dssp CCEEEEECCSSCS
T ss_pred CCEEEEeCCCCCC
Confidence 4789999988764
No 218
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.63 E-value=2.1e-08 Score=85.17 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=68.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccC------CCCccc-----------eeeeeeeeE---------------
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGVT-----------STCEMQRTV--------------- 64 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~------~~~~~t-----------~~~~~~~~~--------------- 64 (253)
.++..|+|+|+||+|||||++.|+|...+..+. ...... ....+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 455799999999999999999998764322211 000000 000000000
Q ss_pred -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEE
Q 025391 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 143 (253)
Q Consensus 65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv 143 (253)
...+..+.++||+|...... ....++....... .||..++++|++... .-...++.+.+.++ .++++
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~---~l~~eL~~i~ral--~~de~llvLDa~t~~--~~~~~~~~~~~~~~-----it~ii 274 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNR---NLMDEMKKIARVT--KPNLVIFVGDALAGN--AIVEQARQFNEAVK-----IDGII 274 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTT---CHHHHHHHHHHHH--CCSEEEEEEEGGGTT--HHHHHHHHHHHHSC-----CCEEE
T ss_pred HHhccchhhHHhhccchhHHH---HHHHHHHHHHHHh--cCCCCEEEEecHHHH--HHHHHHHHHHHhcC-----CCEEE
Confidence 01234577899999864332 2334444333222 367888888876442 22223333333322 57899
Q ss_pred EeCCCCCC
Q 025391 144 FTGGDELE 151 (253)
Q Consensus 144 ~~k~D~~~ 151 (253)
+||.|...
T Consensus 275 lTKlD~~a 282 (328)
T 3e70_C 275 LTKLDADA 282 (328)
T ss_dssp EECGGGCS
T ss_pred EeCcCCcc
Confidence 99999753
No 219
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.63 E-value=1.3e-07 Score=80.21 Aligned_cols=75 Identities=11% Similarity=0.148 Sum_probs=52.7
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC-------CCCCHH-HHHHHHHHHHHhccc--
Q 025391 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SRFSQE-EEAALHSLQTLFGKK-- 135 (253)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-------~~~~~~-~~~~l~~l~~~~g~~-- 135 (253)
.++..+.+|||+|. +..+..+..++.+++++|||+|++ +.-+.. -...+.++......+
T Consensus 164 ~~~v~l~iwDtgGQ-----------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 164 LQSVIFRMVDVGGQ-----------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp ETTEEEEEEEECCS-----------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred eeceeeEEEEcCCc-----------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 36778999999997 566677788999999999999765 111111 133455555554332
Q ss_pred ccCeEEEEEeCCCCCC
Q 025391 136 IFDYMIVVFTGGDELE 151 (253)
Q Consensus 136 ~~~~~ivv~~k~D~~~ 151 (253)
...|+++++||+|.+.
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 2368999999999863
No 220
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.61 E-value=8.8e-08 Score=82.22 Aligned_cols=125 Identities=17% Similarity=0.256 Sum_probs=70.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccC------CCCcc-------c----eeeeeeeeEe--------------
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGV-------T----STCEMQRTVL-------------- 65 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~------~~~~~-------t----~~~~~~~~~~-------------- 65 (253)
.++..|+|+|+||||||||++.|+|...+..+. ..... . ....+.....
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 345789999999999999999998864322211 11000 0 0011111000
Q ss_pred ---eCCeEEEEEeCCCCCCCCCCcHHHHHHH---HHHHH-hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccC
Q 025391 66 ---KDGQVVNVIDTPGLFDFSAGSEFVGKEI---VKCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD 138 (253)
Q Consensus 66 ---~~~~~~~liDtpG~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~ 138 (253)
..+....++||.|..... .....++ +..+. .....|+-+++|+|++..++.... ++.+.+..|
T Consensus 235 ~~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g----- 304 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVG----- 304 (359)
T ss_dssp HHHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTC-----
T ss_pred HHHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcC-----
Confidence 012346789999986532 2222222 23333 334567777777788767765543 333333333
Q ss_pred eEEEEEeCCCCCC
Q 025391 139 YMIVVFTGGDELE 151 (253)
Q Consensus 139 ~~ivv~~k~D~~~ 151 (253)
.++|++||.|...
T Consensus 305 ~t~iiiThlD~~~ 317 (359)
T 2og2_A 305 ITGLILTKLDGSA 317 (359)
T ss_dssp CCEEEEESCTTCS
T ss_pred CeEEEEecCcccc
Confidence 4889999988764
No 221
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.59 E-value=9.3e-07 Score=75.19 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=52.1
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC-------CCC-HHHHHHHHHHHHHhccc--c
Q 025391 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-------RFS-QEEEAALHSLQTLFGKK--I 136 (253)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-------~~~-~~~~~~l~~l~~~~g~~--~ 136 (253)
++..+.+|||+|. +.++..+..++.+++++|||+|+++ .-+ ..-...+.++....... .
T Consensus 159 ~~v~l~iwDtaGQ-----------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~ 227 (340)
T 4fid_A 159 KDIPFHLIDVGGQ-----------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK 227 (340)
T ss_dssp SSCEEEEEECCSC-----------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred eeeeeccccCCCc-----------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence 5678999999997 6677888889999999999999871 001 11123444444443322 2
Q ss_pred cCeEEEEEeCCCCCC
Q 025391 137 FDYMIVVFTGGDELE 151 (253)
Q Consensus 137 ~~~~ivv~~k~D~~~ 151 (253)
..|++|++||+|.+.
T Consensus 228 ~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 228 GAVKLIFLNKMDLFE 242 (340)
T ss_dssp TSEEEEEEECHHHHH
T ss_pred CCeEEEEEECchhhh
Confidence 368999999999874
No 222
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.58 E-value=1.5e-07 Score=80.97 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=46.4
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC--------CHHHHHHHHHHHHHhccc--c
Q 025391 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQTLFGKK--I 136 (253)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~--------~~~~~~~l~~l~~~~g~~--~ 136 (253)
++..+.+|||||.. ..+..+..++.+++++|||+|+++.- ...-...+.++....... .
T Consensus 199 ~~~~l~i~Dt~Gq~-----------~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 199 KNVPFKMVDVGGQR-----------SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred CCeEEEEEeccchh-----------hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 56789999999984 33455667889999999999998410 111223444444443321 2
Q ss_pred cCeEEEEEeCCCCC
Q 025391 137 FDYMIVVFTGGDEL 150 (253)
Q Consensus 137 ~~~~ivv~~k~D~~ 150 (253)
..|++|++||.|.+
T Consensus 268 ~~piILv~NK~DL~ 281 (362)
T 1zcb_A 268 NVSIILFLNKTDLL 281 (362)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCCEEEEEEChhhh
Confidence 36899999999986
No 223
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.55 E-value=2.1e-06 Score=69.46 Aligned_cols=30 Identities=27% Similarity=0.210 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||||||||++.|+|...+..+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 60 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence 358999999999999999999998765444
No 224
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.51 E-value=3e-07 Score=81.04 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=60.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC-----------------CCccccCCCCccceeeeeeee----EeeC--CeEEE
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGR-----------------RAFKSRASSSGVTSTCEMQRT----VLKD--GQVVN 72 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~-----------------~~~~~~~~~~~~t~~~~~~~~----~~~~--~~~~~ 72 (253)
..+...|+|+|+.++|||||+|.|+|. ..|..+......|.-...... .... ...+.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEE
Confidence 345578999999999999999999974 122222222222322222211 1111 35799
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 025391 73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL 131 (253)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~ 131 (253)
++||||+++...+ ......+....... .+.+||-. ...++..+...|..+.++
T Consensus 144 llDTeG~~~~~~~-~~~d~~ifal~~lL---Ss~~IyN~--~~~i~~~~l~~L~~~~e~ 196 (447)
T 3q5d_A 144 LMDTQGTFDSQST-LRDSATVFALSTMI---SSIQVYNL--SQNVQEDDLQHLQLFTEY 196 (447)
T ss_dssp EEEEECCCSSHHH-HHHHHHHHHHHHHH---CSEEEEEE--SSSCCHHHHHHHHHHHHH
T ss_pred EEcCCcccccccc-hhhhHHHHHHHHHH---hhHHHHhh--cccccHHHHHHHHHHHHH
Confidence 9999999865321 11112222211111 13444444 347888887777665553
No 225
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.50 E-value=7.1e-07 Score=73.17 Aligned_cols=31 Identities=26% Similarity=0.178 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G 70 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 70 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3358999999999999999999998655443
No 226
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.46 E-value=4.2e-06 Score=68.80 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G 79 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG 79 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence 3458999999999999999999998665443
No 227
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.44 E-value=7e-07 Score=72.50 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 61 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 358999999999999999999998765444
No 228
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.43 E-value=2.2e-06 Score=70.10 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 60 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 358999999999999999999998654443
No 229
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.42 E-value=1.3e-06 Score=74.95 Aligned_cols=73 Identities=11% Similarity=0.116 Sum_probs=51.0
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCC--------HHHHHHHHHHHHHhccc--c
Q 025391 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS--------QEEEAALHSLQTLFGKK--I 136 (253)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~--------~~~~~~l~~l~~~~g~~--~ 136 (253)
++..+.+|||+|... ++..+..++.+++++|||+|+++.-+ ..-.....++....... .
T Consensus 191 ~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 191 KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 577899999999743 34556788899999999999984211 11233445555554322 2
Q ss_pred cCeEEEEEeCCCCC
Q 025391 137 FDYMIVVFTGGDEL 150 (253)
Q Consensus 137 ~~~~ivv~~k~D~~ 150 (253)
..|++|++||.|.+
T Consensus 260 ~~piiLv~NK~DL~ 273 (353)
T 1cip_A 260 DTSIILFLNKKDLF 273 (353)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCcEEEEEECcCch
Confidence 46899999999986
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.42 E-value=1.5e-06 Score=72.86 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=66.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC------CCCccccCCCCcc-ce----------eeeeee--------------eEe--
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG------RRAFKSRASSSGV-TS----------TCEMQR--------------TVL-- 65 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g------~~~~~~~~~~~~~-t~----------~~~~~~--------------~~~-- 65 (253)
...|+++|++|+||||++..|++ ..+.......... .. ...... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999873 3322111111100 00 000000 000
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEe
Q 025391 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (253)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~ 145 (253)
..+.+++++||||.... ...+....++...... ..+|.+++|++++.. . ..+..+.. |... .....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~~--~~~d~vllVvda~~g--~---~~~~~~~~-~~~~-~~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYEA--IKPDEVTLVIDASIG--Q---KAYDLASK-FNQA-SKIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--G---GHHHHHHH-HHHT-CTTEEEEEE
T ss_pred hCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHHH--hcCCEEEEEeeCCch--H---HHHHHHHH-HHhh-CCCCEEEEe
Confidence 14567999999998651 1222233333332222 257899999998632 1 22333322 2221 223788999
Q ss_pred CCCCCC
Q 025391 146 GGDELE 151 (253)
Q Consensus 146 k~D~~~ 151 (253)
|.|...
T Consensus 248 k~D~~~ 253 (297)
T 1j8m_F 248 KMDGTA 253 (297)
T ss_dssp CGGGCT
T ss_pred CCCCCc
Confidence 999864
No 231
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.41 E-value=3.2e-06 Score=67.87 Aligned_cols=30 Identities=23% Similarity=0.155 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||||||||++.|+|...+..+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 59 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDAPTEG 59 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 358999999999999999999998665443
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.38 E-value=2.8e-06 Score=74.80 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=68.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh-------CCCCccccCCCCccc-----------eeeeeee--------------eE
Q 025391 17 NGERTVVLVGRTGNGKSATGNSIL-------GRRAFKSRASSSGVT-----------STCEMQR--------------TV 64 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~-------g~~~~~~~~~~~~~t-----------~~~~~~~--------------~~ 64 (253)
.+...|+++|++|+||||++..|+ |..+.....++.... ....... +.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345789999999999999999987 655432222211100 0000000 00
Q ss_pred e--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEE
Q 025391 65 L--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142 (253)
Q Consensus 65 ~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~iv 142 (253)
. ..+.+++||||||..... ..+...+..... ...|+.+++|++++...+. +..+.. |.... ....+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~---~~l~~~L~~~~~--~~~p~~vllVvda~~g~~~-----~~~~~~-f~~~l-~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVD---EAMMDEIKQVHA--SINPVETLFVVDAMTGQDA-----ANTAKA-FNEAL-PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTC---HHHHHHHHHHHH--HSCCSEEEEEEETTBCTTH-----HHHHHH-HHHHS-CCCCE
T ss_pred HHHhCCCCEEEEECCCccccc---HHHHHHHHHHHH--hhcCcceeEEeecchhHHH-----HHHHHH-HhccC-CCeEE
Confidence 0 135689999999976432 223333333321 2367899999998744332 222222 22211 22567
Q ss_pred EEeCCCCCC
Q 025391 143 VFTGGDELE 151 (253)
Q Consensus 143 v~~k~D~~~ 151 (253)
|+||.|...
T Consensus 246 VlnK~D~~~ 254 (433)
T 2xxa_A 246 VLTKVDGDA 254 (433)
T ss_dssp EEECTTSSS
T ss_pred EEecCCCCc
Confidence 999999864
No 233
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.37 E-value=3.4e-06 Score=67.90 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 63 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 358999999999999999999998654433
No 234
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.37 E-value=3.2e-07 Score=76.85 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=64.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc-------CCCCcccee-----------eeeee----------eEeeCCe
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------ASSSGVTST-----------CEMQR----------TVLKDGQ 69 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~-------~~~~~~t~~-----------~~~~~----------~~~~~~~ 69 (253)
+...|+|+|++|+||||++..|++......+ ..+...+.. ..... +....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 4568999999999999999998754321111 111000000 00000 0011345
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 025391 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (253)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D~ 149 (253)
++.++||||..... .....++...+. ...++.+++|++++... . .+..+.+.|. .....-+|+||.|.
T Consensus 184 dlvIiDT~G~~~~~---~~~~~el~~~l~--~~~~~~~~lVl~at~~~--~---~~~~~~~~~~--~l~~~giVltk~D~ 251 (296)
T 2px0_A 184 DHVFVDTAGRNFKD---PQYIDELKETIP--FESSIQSFLVLSATAKY--E---DMKHIVKRFS--SVPVNQYIFTKIDE 251 (296)
T ss_dssp SEEEEECCCCCTTS---HHHHHHHHHHSC--CCTTEEEEEEEETTBCH--H---HHHHHTTTTS--SSCCCEEEEECTTT
T ss_pred CEEEEeCCCCChhh---HHHHHHHHHHHh--hcCCCeEEEEEECCCCH--H---HHHHHHHHHh--cCCCCEEEEeCCCc
Confidence 89999999987432 222222322221 12467888888876321 1 2222233333 12345677899998
Q ss_pred CC
Q 025391 150 LE 151 (253)
Q Consensus 150 ~~ 151 (253)
..
T Consensus 252 ~~ 253 (296)
T 2px0_A 252 TT 253 (296)
T ss_dssp CS
T ss_pred cc
Confidence 74
No 235
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.35 E-value=2.5e-07 Score=77.85 Aligned_cols=125 Identities=17% Similarity=0.211 Sum_probs=66.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCcccc------CCCCccc-----------eeeeeee--------------e--
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGVT-----------STCEMQR--------------T-- 63 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~------~~~~~~t-----------~~~~~~~--------------~-- 63 (253)
.+...|+|+|++|+||||++..|++......+ .+..... ....... +
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 34568999999999999999998764321111 0000000 0000000 0
Q ss_pred EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh----hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCe
Q 025391 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM----AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139 (253)
Q Consensus 64 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~ 139 (253)
....+.++.++||||.. ........++...... ....||.+++|++++ +. ...++....+ ... ...
T Consensus 182 a~~~~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~--~~~l~~a~~~-~~~-~~i 251 (306)
T 1vma_A 182 ALARNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TG--QNGLVQAKIF-KEA-VNV 251 (306)
T ss_dssp HHHTTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GH--HHHHHHHHHH-HHH-SCC
T ss_pred HHhcCCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CC--HHHHHHHHHH-Hhc-CCC
Confidence 01134579999999963 2233344444433322 224589999999886 22 2223333222 111 234
Q ss_pred EEEEEeCCCCCC
Q 025391 140 MIVVFTGGDELE 151 (253)
Q Consensus 140 ~ivv~~k~D~~~ 151 (253)
.-+|+||.|...
T Consensus 252 ~gvVlTk~D~~~ 263 (306)
T 1vma_A 252 TGIILTKLDGTA 263 (306)
T ss_dssp CEEEEECGGGCS
T ss_pred CEEEEeCCCCcc
Confidence 678889999864
No 236
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.35 E-value=6.5e-06 Score=67.12 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFK 46 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~ 46 (253)
.-.++|+|+||+|||||++.|+|...+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 3589999999999999999999986554
No 237
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.34 E-value=1.4e-07 Score=79.27 Aligned_cols=59 Identities=29% Similarity=0.379 Sum_probs=33.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC------ccceeeeeeeeEeeCCeEEEEEeCCCCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (253)
...++|+|+||+|||||+|.|+|...+..+.... .+|..... .. .. ...++||||+..+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~-~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IH-TS--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EE-ET--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hh-cC--CEEEecCCCcccc
Confidence 4689999999999999999999987655543321 22221111 11 11 3478999998753
No 238
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.33 E-value=1.1e-05 Score=69.24 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||||||||++.|+|...+..+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G 83 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence 3468999999999999999999998765444
No 239
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.30 E-value=4.4e-06 Score=71.57 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||||||||++.|+|...+..+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 59 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQPDSG 59 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 358999999999999999999998765544
No 240
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.30 E-value=1.1e-06 Score=77.02 Aligned_cols=122 Identities=20% Similarity=0.198 Sum_probs=65.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccc------cCCCCcc-c----------eeeeeee--------------eEe-
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS------RASSSGV-T----------STCEMQR--------------TVL- 65 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~------~~~~~~~-t----------~~~~~~~--------------~~~- 65 (253)
+...|+++|++|+||||++..|++...... ..+.... . ....... +..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 456899999999999999998875432111 1111000 0 0000000 000
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEE
Q 025391 66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (253)
Q Consensus 66 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~ 144 (253)
..+.++++|||||.... ......++....... .||.+++|+|++... ..+..+.. |... .....||+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tgq-----~av~~a~~-f~~~-l~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTGQ-----EALSVARA-FDEK-VGVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGTT-----HHHHHHHH-HHHH-TCCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccchH-----HHHHHHHH-HHhc-CCceEEEE
Confidence 14557999999997643 233334443333322 578889999986331 12222222 2211 12477899
Q ss_pred eCCCCCC
Q 025391 145 TGGDELE 151 (253)
Q Consensus 145 ~k~D~~~ 151 (253)
||.|...
T Consensus 245 TKlD~~~ 251 (425)
T 2ffh_A 245 TKLDGDA 251 (425)
T ss_dssp ESGGGCS
T ss_pred eCcCCcc
Confidence 9998753
No 241
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.29 E-value=1.8e-06 Score=74.00 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=47.6
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC----------CCCCHHHHHHHHHHHHHhccc--
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR----------SRFSQEEEAALHSLQTLFGKK-- 135 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~l~~l~~~~g~~-- 135 (253)
...+.+|||+|... ++.....++++++++|+|+|++ +.-+. ..+..++.......
T Consensus 182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~--~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM--METKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHH--HHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHH--HHHHHHHHHHHhcccc
Confidence 45789999999854 3355568889999999999987 22222 23444454443321
Q ss_pred ccCeEEEEEeCCCCCC
Q 025391 136 IFDYMIVVFTGGDELE 151 (253)
Q Consensus 136 ~~~~~ivv~~k~D~~~ 151 (253)
...|++||+||+|...
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 2468999999999863
No 242
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.29 E-value=5.8e-06 Score=71.34 Aligned_cols=30 Identities=37% Similarity=0.422 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||||||||++.|+|...+..+
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 58 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSG 58 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCCCCCe
Confidence 358999999999999999999998765444
No 243
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.29 E-value=1.3e-06 Score=73.48 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G 109 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDISSG 109 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence 4468999999999999999999998654443
No 244
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.27 E-value=7.2e-06 Score=70.18 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 70 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERPTKG 70 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence 358999999999999999999998765444
No 245
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.26 E-value=1.7e-05 Score=68.11 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSG 58 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCce
Confidence 358999999999999999999998765443
No 246
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.26 E-value=1.5e-05 Score=68.69 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence 357999999999999999999998765444
No 247
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.24 E-value=4.8e-06 Score=71.78 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 66 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence 358999999999999999999998765444
No 248
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.24 E-value=1.2e-05 Score=70.73 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=63.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHh-------C----------CCCccccCCCCccceeeeeeeeE----eeC--CeEEE
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSIL-------G----------RRAFKSRASSSGVTSTCEMQRTV----LKD--GQVVN 72 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~-------g----------~~~~~~~~~~~~~t~~~~~~~~~----~~~--~~~~~ 72 (253)
..+...|+|+|+.++|||+|+|.|+ | ...|..+....+.|.-...+..+ ... +..+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 4466789999999999999999765 2 23344433334445444444322 112 34699
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHH-HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 025391 73 VIDTPGLFDFSAGSEFVGKEIVKC-IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130 (253)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~ 130 (253)
++||.|+++...+.+. ...+... +-.+ ..+||=.. ..++..+.+.|..+.+
T Consensus 144 llDTEG~~d~~~~~~~-d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~te 195 (457)
T 4ido_A 144 LMDTQGTFDSQSTLRD-SATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTE 195 (457)
T ss_dssp EEEECCBTCTTCCHHH-HHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHH
T ss_pred EEeccCCCCcccCccc-cHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHH
Confidence 9999999887664322 2222222 2222 35555443 3677777666665554
No 249
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.22 E-value=9.8e-06 Score=67.54 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G 93 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 3458999999999999999999998654443
No 250
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.22 E-value=1.7e-05 Score=67.74 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 55 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHVPDSG 55 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCCCCCc
Confidence 358999999999999999999998765444
No 251
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.21 E-value=9.6e-06 Score=69.46 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 60 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDVPSTG 60 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 358999999999999999999998765444
No 252
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.18 E-value=3e-06 Score=76.59 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~ 49 (253)
+.-.++|+|+||||||||++.|+|...+..+.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~ 55 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGD 55 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCCTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 44689999999999999999999987665543
No 253
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.18 E-value=5.1e-06 Score=70.23 Aligned_cols=125 Identities=21% Similarity=0.204 Sum_probs=67.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccc------cCCCCcc-------ce-----eeeeeee-E-------------
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS------RASSSGV-------TS-----TCEMQRT-V------------- 64 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~------~~~~~~~-------t~-----~~~~~~~-~------------- 64 (253)
.+...|+++|++|+||||++..|++...... +.+.... .. ......+ .
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 4457899999999999999998865432111 1111000 00 0001111 0
Q ss_pred -----eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH---HHHhh-cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 025391 65 -----LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK---CIGMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK 135 (253)
Q Consensus 65 -----~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~ 135 (253)
...+.++++|||||.... ......++.. .+... ...+|.+++|++++.. ...+..+.. |...
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-----~~~l~~~~~-~~~~ 253 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-----QNGVIQAEE-FSKV 253 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-----HHHHHHHHH-HTTT
T ss_pred HHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-----HHHHHHHHH-Hhhc
Confidence 013457999999998531 1222233332 22212 2357899999988732 223344443 3322
Q ss_pred ccCeEEEEEeCCCCCC
Q 025391 136 IFDYMIVVFTGGDELE 151 (253)
Q Consensus 136 ~~~~~ivv~~k~D~~~ 151 (253)
....-+|+||.|...
T Consensus 254 -~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 254 -ADVSGIILTKMDSTS 268 (320)
T ss_dssp -SCCCEEEEECGGGCS
T ss_pred -CCCcEEEEeCCCCCC
Confidence 234568899999754
No 254
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.18 E-value=1.5e-05 Score=68.38 Aligned_cols=30 Identities=30% Similarity=0.284 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSG 58 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCCCCcc
Confidence 358999999999999999999998765443
No 255
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.16 E-value=2.8e-06 Score=71.35 Aligned_cols=58 Identities=26% Similarity=0.322 Sum_probs=36.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC----c--cceeeeeeeeEeeCCeEEEEEeCCCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (253)
...++|+|+||+|||||+|.|+ ...+..+.... + .|.... ... . .....++||||+..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~-~-~~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIP-F-GKGSFVGDTPGFSK 228 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEE-E-TTTEEEESSCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEE-c-CCCcEEEECcCcCc
Confidence 3689999999999999999999 66555443322 1 121111 111 1 12347899999864
No 256
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.16 E-value=1.2e-06 Score=74.98 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCC-cccc
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRA-FKSR 48 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~-~~~~ 48 (253)
..++|+|+||+|||||+|.|+|... +..+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccC
Confidence 5899999999999999999999876 5444
No 257
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.14 E-value=4.4e-06 Score=75.64 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~ 49 (253)
.+.-.++|+|+||+|||||++.|+|...+..+.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 455799999999999999999999987655443
No 258
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.14 E-value=9.3e-07 Score=70.57 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..++|+|+|.+|+|||||++.|++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999865
No 259
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.12 E-value=9e-06 Score=74.52 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~ 49 (253)
.-.++|+|+||+|||||++.|+|...+..+.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 412 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 4589999999999999999999987655543
No 260
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.11 E-value=1.1e-05 Score=73.68 Aligned_cols=31 Identities=39% Similarity=0.474 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
++-.++|+|+||+|||||++.|+|...+..|
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 398 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 4468999999999999999999998665444
No 261
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.10 E-value=2.4e-06 Score=71.70 Aligned_cols=59 Identities=27% Similarity=0.320 Sum_probs=35.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC----c--cceeeeeeeeEeeCCeEEEEEeCCCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (253)
...++|+|+||+|||||+|.|+|...+..+.... + .|..... .. ......++|+||+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~~--~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LK--FDFGGYVVDTPGFAN 233 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EE--CTTSCEEESSCSSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--EE--cCCCCEEEECcCCCc
Confidence 3579999999999999999999987665553322 1 1211111 11 112347899999864
No 262
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.08 E-value=4.4e-06 Score=69.89 Aligned_cols=122 Identities=22% Similarity=0.229 Sum_probs=66.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc------CCCCcc-ce----------eeeeee--------------eEe-
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-TS----------TCEMQR--------------TVL- 65 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~------~~~~~~-t~----------~~~~~~--------------~~~- 65 (253)
+...|+++|++|+||||++..|++......+ ...... .. ...... +..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998764321111 110000 00 000000 000
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEE
Q 025391 66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (253)
Q Consensus 66 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~ 144 (253)
..+.+++++||||.... ......++....... .|+.+++|++++.. . ..++.+.. |... ....-+|+
T Consensus 177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~---~~~~~~~~-~~~~-~~i~givl 244 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--Q---EALSVARA-FDEK-VGVTGLVL 244 (295)
T ss_dssp HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--H---HHHHHHHH-HHHH-TCCCEEEE
T ss_pred HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--H---HHHHHHHH-Hhhc-CCCCEEEE
Confidence 13457999999987543 233334444444333 46788899987632 2 22233322 2211 12466889
Q ss_pred eCCCCCC
Q 025391 145 TGGDELE 151 (253)
Q Consensus 145 ~k~D~~~ 151 (253)
||.|...
T Consensus 245 nk~d~~~ 251 (295)
T 1ls1_A 245 TKLDGDA 251 (295)
T ss_dssp ECGGGCS
T ss_pred ECCCCCc
Confidence 9998764
No 263
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.9e-05 Score=72.37 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~ 49 (253)
.+.-.++|+|+||+|||||++.|+|...+..+.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~ 133 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCce
Confidence 455789999999999999999999987766554
No 264
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.7e-05 Score=72.70 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~ 49 (253)
-.++|+|+||+|||||++.|+|...+..+.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 358999999999999999999987766553
No 265
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.01 E-value=1.5e-05 Score=72.19 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~ 49 (253)
.-.++|+|+||+|||||++.|+|...+..+.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 342 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 4589999999999999999999987655543
No 266
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.97 E-value=1.1e-05 Score=73.77 Aligned_cols=31 Identities=35% Similarity=0.309 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
++-.++|+|+||+|||||++.|+|...+..|
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 396 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 4468999999999999999999998665443
No 267
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.96 E-value=1.1e-05 Score=72.85 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G 323 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEITADEG 323 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 357999999999999999999998765544
No 268
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.94 E-value=7.1e-06 Score=66.61 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4468999999999999999999998765443
No 269
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.93 E-value=5.4e-06 Score=67.23 Aligned_cols=29 Identities=34% Similarity=0.299 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
-.++|+|+||||||||++.|+|...+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 53 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRG 53 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 47999999999999999999998755443
No 270
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.93 E-value=6e-06 Score=67.83 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||||||||++.|+|...+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 61 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEG 61 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3358999999999999999999998765443
No 271
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.93 E-value=2e-05 Score=72.09 Aligned_cols=31 Identities=29% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G 398 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERG 398 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence 4468999999999999999999998665443
No 272
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.92 E-value=6.7e-06 Score=67.71 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||||||||++.|+|...+..+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 66 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 3468999999999999999999998765443
No 273
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.92 E-value=5.6e-06 Score=65.95 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G 64 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 357999999999999999999998654443
No 274
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.92 E-value=6.3e-06 Score=67.54 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 62 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKADEG 62 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3358999999999999999999998765444
No 275
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.91 E-value=5.8e-06 Score=66.92 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3458999999999999999999998654433
No 276
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.91 E-value=1.3e-05 Score=73.40 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..|
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 4569999999999999999999998665443
No 277
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.90 E-value=6.7e-06 Score=68.01 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||||||||++.|+|...+..+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G 63 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILKPSSG 63 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 358999999999999999999998655443
No 278
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.90 E-value=4.7e-06 Score=64.42 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
+++|+|+||+|||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999874
No 279
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.90 E-value=5.1e-06 Score=66.42 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
+...++|+|+||||||||++.|+|...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 446899999999999999999998754
No 280
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.89 E-value=2.4e-05 Score=71.54 Aligned_cols=31 Identities=35% Similarity=0.479 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
++-.++|+|+||+|||||++.|+|...+..|
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 398 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEG 398 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence 4468999999999999999999998655443
No 281
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.88 E-value=7.8e-06 Score=66.56 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 64 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 358999999999999999999998665443
No 282
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.88 E-value=1e-05 Score=80.52 Aligned_cols=31 Identities=26% Similarity=0.202 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-+|+|||++|+|||||++.|+|-..+..|
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1134 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCccCCCC
Confidence 4568999999999999999999997654433
No 283
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.88 E-value=2.1e-05 Score=72.05 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
++-.++|+|+||+|||||++.|+|...+..|
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 399 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDPASG 399 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 3468999999999999999999998655443
No 284
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.87 E-value=8.3e-06 Score=67.63 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G 76 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPATSG 76 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence 358999999999999999999998765444
No 285
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.87 E-value=8.7e-06 Score=67.02 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
.-.++|+|+||+|||||++.|+|...+..+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G 62 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 358999999999999999999998765444
No 286
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.87 E-value=8.4e-06 Score=61.72 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|++|||||||++.|+|.. +..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 34689999999999999999999976 4444
No 287
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.87 E-value=9e-06 Score=67.11 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|+|+||+|||||++.|+|...+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G 74 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 3458999999999999999999998765443
No 288
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.86 E-value=5.1e-06 Score=65.24 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
...++|+|+||||||||++.|+|.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999985
No 289
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.84 E-value=0.0002 Score=68.53 Aligned_cols=116 Identities=10% Similarity=0.004 Sum_probs=59.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHH--------hCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCC-CCcHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSI--------LGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS-AGSEFV 89 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l--------~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~ 89 (253)
...++|+|+||+|||||++.| .|..++... ..... -..-+.-+......... ++...-
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~------------~~~~~-~d~i~~~ig~~d~l~~~lStf~~e 728 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES------------AEVSI-VDCILARVGAGDSQLKGVSTFMAE 728 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE------------EEEEC-CSEEEEECC---------CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc------------ccchH-HHHHHHhcCchhhHHHhHhhhHHH
Confidence 467999999999999999999 554332211 00110 11111111111110001 111111
Q ss_pred HHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccCeEEEEEeCCCCC
Q 025391 90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l-~~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
..++...+.. ...+ .++++++++..+++.+...+ ..+.+.+... ...+++++||...+
T Consensus 729 ~~~~a~il~~-a~~~-sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~-~g~~vl~aTH~~el 787 (934)
T 3thx_A 729 MLETASILRS-ATKD-SLIIIDELGRGTSTYDGFGLAWAISEYIATK-IGAFCMFATHFHEL 787 (934)
T ss_dssp HHHHHHHHHH-CCTT-CEEEEESCSCSSCHHHHHHHHHHHHHHHHHT-TCCEEEEEESCGGG
T ss_pred HHHHHHHHHh-ccCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCCEEEEEcCcHHH
Confidence 2334444433 3344 78889999989998875443 3333333211 12588889997554
No 290
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.84 E-value=3.4e-05 Score=65.46 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCc
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAF 45 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~ 45 (253)
..++|+|+||+|||||++.|+|...+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 57999999999999999999997543
No 291
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.83 E-value=7.7e-06 Score=64.57 Aligned_cols=26 Identities=35% Similarity=0.357 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
+.-.++|+|+||||||||++.|+|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999864
No 292
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.79 E-value=1.9e-05 Score=78.65 Aligned_cols=31 Identities=32% Similarity=0.352 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-.++|||++|+|||||++.|+|...+..|
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G 473 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccccccC
Confidence 4468999999999999999999998655444
No 293
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.78 E-value=1.3e-05 Score=65.79 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
-.++|+|+||+|||||++.|+|.. +..+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G 58 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-PYSG 58 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence 589999999999999999999987 5544
No 294
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00019 Score=62.22 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=44.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (253)
++.-|+|.||+|+|||+|+++|++... ..+..++.+.+.+...+. ....++..+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~------------------------~~f~~v~~s~l~sk~vGe--se~~vr~lF 234 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD------------------------CKFIRVSGAELVQKYIGE--GSRMVRELF 234 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT------------------------CEEEEEEGGGGSCSSTTH--HHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC------------------------CCceEEEhHHhhccccch--HHHHHHHHH
Confidence 446799999999999999999987521 112234444444332222 124444555
Q ss_pred HhhcCCccEEEEEEeCCC
Q 025391 98 GMAKDGIHAVLVVFSVRS 115 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~ 115 (253)
..+.....++||+++++.
T Consensus 235 ~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 235 VMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp HHHHHTCSEEEEEESSSC
T ss_pred HHHHHhCCceEeeecchh
Confidence 444344458999988763
No 295
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.77 E-value=1.2e-05 Score=63.05 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
+..|+|+|+||||||||++.|+|..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999999863
No 296
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00021 Score=62.76 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=45.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.++.-|+|.||+|+|||+|+++|++... ..+..++.+.+.+...+.. ...++..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~------------------------~~~~~v~~s~l~sk~~Ges--e~~ir~~ 266 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIG------------------------ANFIFSPASGIVDKYIGES--ARIIREM 266 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT------------------------CEEEEEEGGGTCCSSSSHH--HHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC------------------------CCEEEEehhhhccccchHH--HHHHHHH
Confidence 3457899999999999999999986521 1233455555554333221 2334444
Q ss_pred HHhhcCCccEEEEEEeCC
Q 025391 97 IGMAKDGIHAVLVVFSVR 114 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~ 114 (253)
+..+.....++||+.+++
T Consensus 267 F~~A~~~~P~IifiDEiD 284 (437)
T 4b4t_L 267 FAYAKEHEPCIIFMDEVD 284 (437)
T ss_dssp HHHHHHSCSEEEEEECCC
T ss_pred HHHHHhcCCceeeeeccc
Confidence 444433445899988776
No 297
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.76 E-value=1.4e-05 Score=65.16 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.-.++|+|+||+|||||++.|+|.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999996
No 298
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.76 E-value=1.6e-05 Score=65.46 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+.-.++|+|+||+|||||++.|+|.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3358999999999999999999997
No 299
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.75 E-value=4.5e-05 Score=75.77 Aligned_cols=31 Identities=32% Similarity=0.295 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-+++|||+||+|||||++.|+|...+..|
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G 445 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 4468999999999999999999998654443
No 300
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.75 E-value=2.7e-05 Score=66.71 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
.-.|+|+|+||+|||||+++|+|...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 35899999999999999999988643
No 301
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.75 E-value=7.3e-05 Score=55.89 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
+...++|+|++|+|||||++.|++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998763
No 302
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.75 E-value=1.9e-05 Score=61.12 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|+|+||||||||++.|++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999986
No 303
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.74 E-value=1.6e-05 Score=65.13 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
+.-.++|+|+||+|||||++.|+|...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999999854
No 304
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.73 E-value=1.4e-05 Score=61.62 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
...++|+|++|||||||++.|++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998854
No 305
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.73 E-value=6.3e-06 Score=65.34 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~ 49 (253)
-.++|+|+||+|||||++.|+|. .+..+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~ 51 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQ 51 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCcCCe
Confidence 57999999999999999999998 655543
No 306
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.73 E-value=1.2e-05 Score=64.21 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
+...++|+|+||||||||++.|+|..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999864
No 307
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.73 E-value=1.1e-05 Score=62.57 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
..++|+|+||||||||++.|+|...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999998653
No 308
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00019 Score=62.63 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+..-|+|.|++|+|||+|+++|++.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 4468999999999999999999875
No 309
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.71 E-value=1.5e-05 Score=62.90 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
..+...|+|+|+||+|||||++.|+|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455799999999999999999998864
No 310
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00027 Score=61.91 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=43.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.++.-|+|.||+|+|||+|+++|++... ..+..++.+.+.+...+. ....++..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~------------------------~~~~~v~~~~l~~~~~Ge--~e~~ir~l 257 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTK------------------------AAFIRVNGSEFVHKYLGE--GPRMVRDV 257 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHT------------------------CEEEEEEGGGTCCSSCSH--HHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC------------------------CCeEEEecchhhccccch--hHHHHHHH
Confidence 3446799999999999999999986521 122334555554433222 12344444
Q ss_pred HHhhcCCccEEEEEEeCC
Q 025391 97 IGMAKDGIHAVLVVFSVR 114 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~ 114 (253)
+..+.....++||+.+++
T Consensus 258 F~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 258 FRLARENAPSIIFIDEVD 275 (428)
T ss_dssp HHHHHHTCSEEEEEECTH
T ss_pred HHHHHHcCCCeeechhhh
Confidence 444433445888887753
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.68 E-value=1.2e-05 Score=64.57 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=16.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh-CCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSIL-GRR 43 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~-g~~ 43 (253)
...|+|+|+||||||||++.|+ |..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999999 764
No 312
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.66 E-value=2e-05 Score=62.10 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|+|++|+|||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999885
No 313
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.65 E-value=8.6e-05 Score=73.73 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+.-+++|+|+||+|||||++.|+|...+..|
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 4468999999999999999999998665443
No 314
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.63 E-value=3.2e-05 Score=59.15 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh
Q 025391 19 ERTVVLVGRTGNGKSATGNSIL 40 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~ 40 (253)
.-.++|+|+||||||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999654
No 315
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.63 E-value=0.00019 Score=67.39 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
...++|+|+||+|||||++.|.|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4689999999999999999998754
No 316
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.61 E-value=0.00012 Score=70.23 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
++-+++|+|+||+|||||++.|+|.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999954
No 317
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.61 E-value=0.00016 Score=69.07 Aligned_cols=124 Identities=10% Similarity=0.046 Sum_probs=57.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCC-CCcHHHHHHHHHHH
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS-AGSEFVGKEIVKCI 97 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~ 97 (253)
...++|+|+||+|||||++.|.+...........+.. .. .+.. -..-+.-+......... +.-..-..++...+
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~-~~---~i~~-~d~i~~~ig~~d~l~~~~stfs~em~~~~~il 747 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAE-EA---TIGI-VDGIFTRMGAADNIYKGRSTFMEELTDTAEII 747 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSS-EE---EEEC-CSEEEEEC----------CCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccch-hh---hhhH-HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHH
Confidence 3689999999999999999986421100000000000 00 0110 01111111111100000 11111123333333
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHH-HHHHHhcccccCeEEEEEeCCCCC
Q 025391 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALH-SLQTLFGKKIFDYMIVVFTGGDEL 150 (253)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~l~-~l~~~~g~~~~~~~ivv~~k~D~~ 150 (253)
.. ... ..+|++++++..+++.+...+. .+.+.+... ...++|++||.-.+
T Consensus 748 ~~-a~~-p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~-~g~tvl~vTH~~el 798 (918)
T 3thx_B 748 RK-ATS-QSLVILDELGRGTSTHDGIAIAYATLEYFIRD-VKSLTLFVTHYPPV 798 (918)
T ss_dssp HH-CCT-TCEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCCEEEEECSCGGG
T ss_pred Hh-ccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh-cCCeEEEEeCcHHH
Confidence 33 233 3688899999899998754443 333332111 12488889997544
No 318
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.61 E-value=2.9e-05 Score=62.90 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|+|++|||||||++.|+|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999874
No 319
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.60 E-value=0.00011 Score=68.13 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=28.2
Q ss_pred CCcc-EEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccCeEEEEEeCC
Q 025391 102 DGIH-AVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGG 147 (253)
Q Consensus 102 ~~~~-~~l~v~d~~~~~~~~~~~~l-~~l~~~~g~~~~~~~ivv~~k~ 147 (253)
..|+ .+|+++++++.+++.....+ +.+.+.-.. ..++|+++|.
T Consensus 219 ~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~---g~tvi~vtHd 263 (670)
T 3ux8_A 219 SRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL---GNTLIVVEHD 263 (670)
T ss_dssp TCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT---TCEEEEECCC
T ss_pred hCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc---CCEEEEEeCC
Confidence 3443 48888999999999875444 444443211 2588889985
No 320
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.59 E-value=3.6e-05 Score=62.34 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh---CCCCcc
Q 025391 19 ERTVVLVGRTGNGKSATGNSIL---GRRAFK 46 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~---g~~~~~ 46 (253)
...|+|+|++|||||||++.|+ |...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4689999999999999999999 876543
No 321
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.59 E-value=4e-05 Score=58.48 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|+|++|+||||+++.|.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4468999999999999999998753
No 322
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.58 E-value=0.00035 Score=54.47 Aligned_cols=81 Identities=7% Similarity=0.015 Sum_probs=47.7
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCC
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~ 147 (253)
..+++|+|||+... ......+.. +|.+|+++.++ ..+.....+++.+..........++.+|+|+.
T Consensus 75 ~yD~viiD~~~~~~---------~~~~~~l~~----ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS---------VITSAAVMV----SDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSS---------HHHHHHHHH----CSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCC---------HHHHHHHHH----CCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 45789999998653 222233333 48899999887 44444456666665542112223568999999
Q ss_pred CCCCCChhhHHHHHc
Q 025391 148 DELEDNDETLEDYLG 162 (253)
Q Consensus 148 D~~~~~~~~~~~~~~ 162 (253)
+.-......+.++++
T Consensus 141 ~~~~~~~~~~~~~l~ 155 (206)
T 4dzz_A 141 IEMATMLNVLKESIK 155 (206)
T ss_dssp CTTEEEEHHHHHHHH
T ss_pred CCCchHHHHHHHHHH
Confidence 864321234445544
No 323
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.57 E-value=3.5e-05 Score=62.79 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh---CCCCc
Q 025391 17 NGERTVVLVGRTGNGKSATGNSIL---GRRAF 45 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~---g~~~~ 45 (253)
.+...|+|+|++||||||+++.|+ |...+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 345789999999999999999999 76543
No 324
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.57 E-value=0.00022 Score=67.34 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...++|+|+||+|||||++.|.|.
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4468999999999999999999875
No 325
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.56 E-value=3.7e-05 Score=63.05 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
.+.-.++|+|+||+|||||++.|+|...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3456899999999999999999998643
No 326
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.55 E-value=2.8e-05 Score=60.62 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
+++|+|+||+|||||++.|+|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998643
No 327
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.54 E-value=3.6e-05 Score=64.44 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+.-.++|+|+||+|||||++.|+|.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4468999999999999999999975
No 328
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.54 E-value=4.3e-05 Score=60.31 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
+...|+|+|++|||||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999874
No 329
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00025 Score=62.24 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.++.-|+|.||+|+|||+|+++|++.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34578999999999999999999875
No 330
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00049 Score=60.56 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.+..-|+|.|++|+|||+|+++|++.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 34578999999999999999999875
No 331
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.53 E-value=4.6e-05 Score=59.71 Aligned_cols=26 Identities=38% Similarity=0.760 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
+...|+|+|++|+|||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999754
No 332
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.52 E-value=4.4e-05 Score=64.29 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
..++..|+|+|+||||||||++.|.|...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34567999999999999999999998643
No 333
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.51 E-value=0.0009 Score=52.59 Aligned_cols=24 Identities=13% Similarity=-0.031 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
+.-.++|+|++|+|||||+..|++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 334
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.49 E-value=5.4e-05 Score=59.24 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
+..|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998875
No 335
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.49 E-value=0.00018 Score=66.87 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=27.4
Q ss_pred EEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccCeEEEEEeCC
Q 025391 106 AVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGG 147 (253)
Q Consensus 106 ~~l~v~d~~~~~~~~~~~-~l~~l~~~~g~~~~~~~ivv~~k~ 147 (253)
-+|+++++++.+++.... +++.+.+.... ..++|+++|.
T Consensus 566 ~llllDEPt~~LD~~~~~~i~~~l~~l~~~---g~tvi~vtHd 605 (670)
T 3ux8_A 566 TLYILDEPTTGLHVDDIARLLDVLHRLVDN---GDTVLVIEHN 605 (670)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCC
Confidence 688889999999998844 44444444221 2589999995
No 336
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.48 E-value=0.00029 Score=59.89 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.++|+|++|+||||+++.|++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999873
No 337
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.47 E-value=5.4e-05 Score=59.29 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|+|++||||||+++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999764
No 338
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.47 E-value=0.00076 Score=54.59 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
....|+|.|++|+|||++++.|...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 339
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.47 E-value=7.8e-05 Score=68.34 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~ 49 (253)
.+.-.++|+|+||+|||||++.|+|...+..+.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 455789999999999999999999987665544
No 340
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.43 E-value=5.9e-05 Score=58.35 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 025391 20 RTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g 41 (253)
..++|+|+||||||||++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999986
No 341
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.42 E-value=8.1e-05 Score=63.95 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAF 45 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~ 45 (253)
+...++|+|+||+|||||++.|+|...+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3468999999999999999999997543
No 342
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.40 E-value=0.00023 Score=61.81 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=51.1
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC----------CCCHHHHHHHHHHHHHhccc-
Q 025391 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS----------RFSQEEEAALHSLQTLFGKK- 135 (253)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~l~~l~~~~g~~- 135 (253)
++..+.+|||+|... ++..+..++.+++++|||+|+++ .-+. ..+..++.......
T Consensus 215 ~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~--~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 215 DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL--QEALNLFKSIWNNRW 281 (402)
T ss_dssp TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHH--HHHHHHHHHHHTCTT
T ss_pred CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccchH--HHHHHHHHHHHhccc
Confidence 578899999999843 34556788899999999999985 2222 33445555544321
Q ss_pred -ccCeEEEEEeCCCCCC
Q 025391 136 -IFDYMIVVFTGGDELE 151 (253)
Q Consensus 136 -~~~~~ivv~~k~D~~~ 151 (253)
...|++||+||.|+..
T Consensus 282 ~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 282 LRTISVILFLNKQDLLA 298 (402)
T ss_dssp CSSCCEEEEEECHHHHH
T ss_pred CCCCeEEEEEEChhhhh
Confidence 2458999999999863
No 343
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.39 E-value=0.0006 Score=56.06 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
...++|.|++|+|||+|++.|+..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999764
No 344
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.39 E-value=9.3e-05 Score=64.12 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
+.-.++|+|+||+|||||++.|+|...
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 346899999999999999999999754
No 345
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.38 E-value=9.1e-05 Score=62.16 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.+...|+|+|++|+|||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999999885
No 346
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.37 E-value=6.9e-05 Score=56.94 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..|+|+|++|+||||+++.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 347
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.36 E-value=9.5e-05 Score=57.86 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|+|++|+||||+++.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 348
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.36 E-value=8.7e-05 Score=58.95 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
+.-.++|+|+||+|||||++.|+|..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999999843
No 349
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.32 E-value=0.0017 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..|+|+|++|+|||||+++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 350
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.31 E-value=0.00013 Score=58.72 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh
Q 025391 17 NGERTVVLVGRTGNGKSATGNSIL 40 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~ 40 (253)
.+.-.++|+|+||||||||++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 344689999999999999999998
No 351
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.31 E-value=0.00021 Score=56.08 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..+...|+|+|++|+||||+++.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345578999999999999999999986
No 352
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.31 E-value=6.5e-05 Score=66.56 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+..+++|+|+||+|||||++.|+|...+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 4468999999999999999999998654433
No 353
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.31 E-value=0.0021 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|.|++|+|||+|++.|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 4468999999999999999999864
No 354
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.30 E-value=0.0019 Score=53.44 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|.|++|+||||+++.|.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
No 355
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.30 E-value=0.0014 Score=63.51 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
...++|+|+||+|||||++.| |..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 468999999999999999998 654
No 356
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.27 E-value=5.8e-05 Score=58.63 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
-|+|+||+|||||||++.|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3899999999999999999754
No 357
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.26 E-value=0.00016 Score=61.05 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
......|+|+|++|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345578999999999999999999765
No 358
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.25 E-value=0.00011 Score=63.02 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFK 46 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~ 46 (253)
..+++|+|+||+|||||++.|+|...+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5799999999999999999999875543
No 359
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.25 E-value=0.00016 Score=56.76 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|+|++||||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999999764
No 360
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.25 E-value=0.00017 Score=56.46 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 025391 20 RTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g 41 (253)
..|+|+|++||||||+++.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 361
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.23 E-value=0.00015 Score=58.06 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.++..|+|+|++||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44578999999999999999999875
No 362
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.21 E-value=0.00016 Score=62.41 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
+.-.|+|+|+||+|||||++.|+|..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44689999999999999999999864
No 363
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.21 E-value=0.00013 Score=62.29 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
+.-+++|+|+||+|||||++.|+|...
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456999999999999999999999854
No 364
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.21 E-value=0.00012 Score=64.94 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
-.++|+|+||+|||||++.|+|...+..+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 58999999999999999999986554333
No 365
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.20 E-value=0.00016 Score=57.47 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.+|+|+|++|+||||+++.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999764
No 366
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.20 E-value=0.00015 Score=56.71 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 025391 20 RTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g 41 (253)
.+|+|+|++||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 367
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.20 E-value=0.00016 Score=64.86 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
...|+|+|+||||||||+++|+|...
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34699999999999999999998753
No 368
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.19 E-value=0.00012 Score=56.21 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
...++|+|++|+|||||++.|++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998764
No 369
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.18 E-value=0.0002 Score=56.11 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.+...|+|+|++|+|||||++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999864
No 370
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.17 E-value=7.6e-05 Score=57.15 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
..|+|+|++|+|||||++.|++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998864
No 371
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.16 E-value=0.00016 Score=55.41 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..+|+|+||+|||||+++|.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998764
No 372
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.15 E-value=0.0002 Score=62.65 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
+.-.|+|+|+||+|||||+++|+|...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 345799999999999999999998643
No 373
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.12 E-value=0.00015 Score=69.45 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~ 48 (253)
+-+++|+|+||+|||||++.|+|...+..|
T Consensus 699 GeivaIiGpNGSGKSTLLklLaGll~P~sG 728 (986)
T 2iw3_A 699 SSRIAVIGPNGAGKSTLINVLTGELLPTSG 728 (986)
T ss_dssp TCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 358999999999999999999998765443
No 374
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.10 E-value=0.0015 Score=54.43 Aligned_cols=77 Identities=12% Similarity=0.003 Sum_probs=41.5
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCe-EEEEEe
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDY-MIVVFT 145 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~-~ivv~~ 145 (253)
..+++|+|||+..... .+......+|.+|+|+.++ ..+... ..+++.+... +.....+ +-+|+|
T Consensus 156 ~yD~ViiD~p~~~~~~------------~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~~gvV~N 221 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG------------GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAK-SKNYKVRLAGCVAN 221 (307)
T ss_dssp SCSEEEEEECCSSCCG------------GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTT-TTTCCCEEEEEEEE
T ss_pred cCCEEEEeCCCccchH------------HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHh-hhcCCCceEEEEEe
Confidence 3578899998754321 1112335568899998765 333222 3444555443 2222223 348999
Q ss_pred CCCCCCCChhhHHHHHc
Q 025391 146 GGDELEDNDETLEDYLG 162 (253)
Q Consensus 146 k~D~~~~~~~~~~~~~~ 162 (253)
+.+.- ..++++.+
T Consensus 222 ~~~~~----~~~~~~~~ 234 (307)
T 3end_A 222 RSRAT----DEVDRFCK 234 (307)
T ss_dssp SCSCC----HHHHHHHH
T ss_pred cCCcH----HHHHHHHH
Confidence 99842 34444443
No 375
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.09 E-value=0.00032 Score=54.73 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|+|++|+||||+++.|++.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999754
No 376
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.07 E-value=0.0038 Score=53.32 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.++|.|++|+|||||++.+++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999865
No 377
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.05 E-value=0.00038 Score=57.90 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
..+...|+|+|++|+|||||++.|.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999987653
No 378
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.04 E-value=0.00029 Score=59.32 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
...++|+|++|||||||+|.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3678999999999999999999864
No 379
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.01 E-value=0.00025 Score=62.47 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
+.-+++|+|+||+|||||++.|+|...
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 446999999999999999999999754
No 380
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.01 E-value=0.00046 Score=53.61 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.....|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999864
No 381
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.99 E-value=0.00053 Score=53.69 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
..+..|+|+|.+|+||||+++.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999964
No 382
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.97 E-value=0.00043 Score=52.20 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 025391 20 RTVVLVGRTGNGKSATGNSI 39 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l 39 (253)
..|+|+|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 383
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.97 E-value=0.0027 Score=51.90 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...++|.|++|+|||+++..|...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4468999999999999999999754
No 384
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.97 E-value=0.0015 Score=54.28 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+.-++|.|++|+|||+|+++|+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356777899999999999999865
No 385
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.97 E-value=0.00036 Score=53.52 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..++|+|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 68999999999999999999875
No 386
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.96 E-value=0.00045 Score=53.88 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..|+|+|.+||||||+++.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998653
No 387
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.95 E-value=0.00045 Score=52.09 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.|+|+|++||||||+++.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
No 388
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.94 E-value=0.00099 Score=52.63 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..++|.|++|+|||||++.++..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998754
No 389
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.94 E-value=0.0031 Score=59.43 Aligned_cols=72 Identities=18% Similarity=0.306 Sum_probs=45.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeeeeeeEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (253)
.++.-|+|.|++|+|||+|+++|++... ..+..++.|.+.....+ .....++..
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg------------------------~~~~~v~~~~l~sk~~g--ese~~lr~l 289 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG------------------------AFFFLINGPEIMSKLAG--ESESNLRKA 289 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT------------------------CEEEEEEHHHHHSSCTT--HHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC------------------------CeEEEEEhHHhhcccch--HHHHHHHHH
Confidence 3557899999999999999999997631 11223344333221111 222555566
Q ss_pred HHhhcCCccEEEEEEeCC
Q 025391 97 IGMAKDGIHAVLVVFSVR 114 (253)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~ 114 (253)
+..+.....++||+.+++
T Consensus 290 F~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 290 FEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp HHHHTTSCSEEEEEESGG
T ss_pred HHHHHHcCCeEEEEehhc
Confidence 666655666899998775
No 390
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.93 E-value=0.00034 Score=57.66 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 025391 22 VVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 22 i~lvG~~g~GKSTl~n~l~g~ 42 (253)
++|+|++|+|||||+++|+|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999875
No 391
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.91 E-value=0.00059 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 025391 20 RTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g 41 (253)
..|+|+|.+|+||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999975
No 392
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.91 E-value=0.014 Score=55.84 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=27.9
Q ss_pred cEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccCeEEEEEeCC
Q 025391 105 HAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGG 147 (253)
Q Consensus 105 ~~~l~v~d~~~~~~~~~~~~l-~~l~~~~g~~~~~~~ivv~~k~ 147 (253)
.-+++++++|+.++..+...+ +.+.+.... ..++|+++|.
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~---G~TVIvI~Hd 867 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDR---GNTVIVIEHN 867 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhc---CCEEEEEeCC
Confidence 368889999999999984444 444443221 2589999984
No 393
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.91 E-value=0.0006 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..|+|+|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999754
No 394
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.91 E-value=0.0007 Score=52.11 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..+|+|+|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999754
No 395
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.90 E-value=0.00069 Score=50.46 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSIL 40 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~ 40 (253)
...+|+|+||+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999975
No 396
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.90 E-value=0.0038 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|.|++|+|||+|++.|+..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999654
No 397
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.90 E-value=0.00058 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
+..|+|+|.+||||||+++.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999973
No 398
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.89 E-value=0.0048 Score=54.76 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.-|+|+|++|+|||+|+++|.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999875
No 399
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.88 E-value=0.00085 Score=51.57 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.+...|+|+|.+|+||||+++.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999764
No 400
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.85 E-value=0.00053 Score=54.30 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.-.++|+|+||+|||||++.|++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999854
No 401
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.83 E-value=0.00069 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 025391 20 RTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g 41 (253)
..|+|+|++|+||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.83 E-value=0.00064 Score=51.95 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|+|.+|+||||+++.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999764
No 403
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.82 E-value=0.00058 Score=58.66 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 025391 21 TVVLVGRTGNGKSATGNSIL 40 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~ 40 (253)
-.+|+|+||||||||+++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999987
No 404
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.81 E-value=0.00082 Score=51.73 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
...|+|+|.+||||||+++.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 405
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.81 E-value=0.01 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh
Q 025391 18 GERTVVLVGRTGNGKSATGNSIL 40 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~ 40 (253)
+.-.++|+|++|+|||||+..|+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 34589999999999999999654
No 406
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.81 E-value=0.0016 Score=54.32 Aligned_cols=100 Identities=13% Similarity=-0.001 Sum_probs=60.0
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHH-HHHHHHHHHHhcccccCeEEEEEeC
Q 025391 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEE-EAALHSLQTLFGKKIFDYMIVVFTG 146 (253)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k 146 (253)
..+.+||| +..+. .....++.++|++|+|+|++++. +... ..++..+.. ...|+++|+||
T Consensus 63 ~~~~iwD~--qer~~-----------~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHRKN-----------LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCCSC-----------EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECC
T ss_pred CeEEEEEE--ccccc-----------eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeH
Confidence 37899999 32221 22335678999999999998664 4432 233333322 13589999999
Q ss_pred CCCCCCChhh---HHHHHcccC--CchhhhhHHHhhhHHHHHHHcCC
Q 025391 147 GDELEDNDET---LEDYLGREC--PKPLKKGATKLRDQQFEVDSLKG 188 (253)
Q Consensus 147 ~D~~~~~~~~---~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~g 188 (253)
+|+.. ... ..++..... ..++..+......+++++....+
T Consensus 125 ~DL~~--~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 125 MDLYD--EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp GGGCC--HHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHcCC--chhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99975 433 334443222 34555666666666666655443
No 407
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.79 E-value=0.00078 Score=51.70 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 025391 20 RTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g 41 (253)
..|+|+|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999864
No 408
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.79 E-value=0.00062 Score=56.49 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
+.-.++|+|+||+|||||++.|++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999987643
No 409
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.79 E-value=0.00053 Score=55.51 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
-++|+|++|+|||||+++|++.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999875
No 410
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.78 E-value=0.0011 Score=51.55 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
.....|+|+|.+|+||||+++.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999874
No 411
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.78 E-value=6.1e-05 Score=60.39 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCc
Q 025391 21 TVVLVGRTGNGKSATGNSILGRRAF 45 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~~~~ 45 (253)
.++|+|+||+|||||+++|+|...+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccccc
Confidence 4678999999999999999987543
No 412
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.78 E-value=0.0038 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..|.|.|++|+|||++++.|...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 56999999999999999999754
No 413
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.77 E-value=0.001 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
..+..|+|+|.+|+||||+++.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999864
No 414
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.77 E-value=0.00086 Score=55.62 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
..+..|+|+|++||||||+++.|+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999964
No 415
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.76 E-value=0.00081 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999754
No 416
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.75 E-value=0.00091 Score=52.90 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
+...|+|+|.+||||||+++.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999864
No 417
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.74 E-value=0.00021 Score=62.22 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=27.2
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 025391 106 AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (253)
Q Consensus 106 ~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~~~~~~ivv~~k~D 148 (253)
-+|+++++++.++......+..+.+.+.. ..++|++||.-
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~---~~~vi~itH~~ 356 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLAD---TRQVLVVTHLA 356 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTT---TSEEEEECSCH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhC---CCEEEEEeCcH
Confidence 57788889989999885555444333332 25888899963
No 418
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.71 E-value=0.0097 Score=46.87 Aligned_cols=59 Identities=7% Similarity=0.045 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccCeEEEEEeCC-CC
Q 025391 91 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK---IFDYMIVVFTGG-DE 149 (253)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~l~~l~~~~g~~---~~~~~ivv~~k~-D~ 149 (253)
..++..+..++.+.|++|||+|.+++-....+.-+..+..++... ...|++|+.||. |.
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDl 175 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD 175 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTT
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCc
Confidence 456666777888889999999987553222333333334444322 235888999984 44
No 419
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.71 E-value=0.001 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
+..|+|+|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998863
No 420
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.71 E-value=0.0022 Score=54.24 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
..|+|+|++|+|||||...|+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 479999999999999999998764
No 421
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.69 E-value=0.00071 Score=57.29 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
..++|+|++|+|||||++.|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999998763
No 422
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.69 E-value=0.001 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..|+|+|.+|+||||+++.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999653
No 423
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.69 E-value=0.0011 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
...|+|+|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 424
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.69 E-value=0.0066 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|.|++|+|||+|++.|+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999754
No 425
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.68 E-value=0.0011 Score=50.48 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.+.|+|+|++|+|||||++.|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999998764
No 426
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.68 E-value=0.0053 Score=49.91 Aligned_cols=77 Identities=17% Similarity=0.084 Sum_probs=43.6
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEeC
Q 025391 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTG 146 (253)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~k 146 (253)
..+++|+|||+..+ . ........+|.+|+++.++ ..+... ..+++.+... +.. .++.+|+|+
T Consensus 144 ~yD~viiD~pp~~~---------~----~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~-~~~--~~~~vv~N~ 206 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------V----TLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKL-NLF--LPIFLIITR 206 (267)
T ss_dssp TCSEEEEEECSSCS---------H----HHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTT-TCC--CCEEEEEEE
T ss_pred CCCEEEEECcCCcc---------H----HHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHH-hcc--CCEEEEEec
Confidence 34789999988643 1 1222234468999999886 544443 3444444443 322 356788898
Q ss_pred CCCCCCChhhHHHHHc
Q 025391 147 GDELEDNDETLEDYLG 162 (253)
Q Consensus 147 ~D~~~~~~~~~~~~~~ 162 (253)
.+.-. ....+.+.+.
T Consensus 207 ~~~~~-~~~~~~~~l~ 221 (267)
T 3k9g_A 207 FKKNR-THKTLFEILK 221 (267)
T ss_dssp ECTTC-SCCHHHHHHT
T ss_pred ccCcc-hHHHHHHHHh
Confidence 84332 1334445554
No 427
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.67 E-value=0.00088 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+|+|+|++|+||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999653
No 428
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.66 E-value=0.0012 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..|+|+|.+||||||+++.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 429
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.66 E-value=0.001 Score=52.34 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 025391 21 TVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g 41 (253)
+|+|+|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999853
No 430
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.66 E-value=0.00074 Score=55.53 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
-|+|+|++|+|||||+++|++.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999875
No 431
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.66 E-value=0.00075 Score=54.84 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
...|+|+|++|+||||+++.|.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999763
No 432
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.65 E-value=0.0013 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+..|+|+|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999765
No 433
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.65 E-value=0.00091 Score=57.64 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|+|++|+|||||++.|++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999864
No 434
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.63 E-value=0.0027 Score=49.89 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=42.8
Q ss_pred CeEEEEEeCCCC-CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEe
Q 025391 68 GQVVNVIDTPGL-FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFT 145 (253)
Q Consensus 68 ~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~ 145 (253)
..+++++|||+. ... .....+ ..+|.+|+++.++ ..+... ..+++.+... . ..++.+|+|
T Consensus 67 ~yD~viiD~p~~~~~~---------~~~~~l----~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~-~---~~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------DLEALA----DGCDLLVIPSTPD-ALALDALMLTIETLQKL-G---NNRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS---------HHHHHH----HTSSEEEEEECSS-HHHHHHHHHHHHHHHHT-C---SSSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH---------HHHHHH----HHCCEEEEEecCC-chhHHHHHHHHHHHHhc-c---CCCEEEEEE
Confidence 457899999986 431 112222 3458888888765 322222 3344444442 1 235789999
Q ss_pred CCCCCC-CChhhHHHHHc
Q 025391 146 GGDELE-DNDETLEDYLG 162 (253)
Q Consensus 146 k~D~~~-~~~~~~~~~~~ 162 (253)
+.+.-. .....+.++++
T Consensus 129 ~~~~~~~~~~~~~~~~l~ 146 (209)
T 3cwq_A 129 IIPPYPSKDGDEARQLLT 146 (209)
T ss_dssp SBCCTTSCHHHHHHHHHH
T ss_pred ecCCccchHHHHHHHHHH
Confidence 988753 22334445554
No 435
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.63 E-value=0.022 Score=48.59 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...+.|+|++|+|||||+..++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999988754
No 436
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.63 E-value=0.0014 Score=52.96 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
++.+|+|+|++||||||+++.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999863
No 437
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.62 E-value=0.0011 Score=52.12 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 025391 21 TVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g 41 (253)
+|+|+|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 438
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.62 E-value=0.0011 Score=52.49 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
...|+|+|++||||||+++.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 439
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.61 E-value=0.0012 Score=53.60 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.|+|+|++|+|||||.+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999998753
No 440
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.60 E-value=0.0012 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh
Q 025391 19 ERTVVLVGRTGNGKSATGNSIL 40 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~ 40 (253)
...|+|+|.+|+||||+++.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 441
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.60 E-value=0.0014 Score=51.05 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
.-..|+|+|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999864
No 442
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.60 E-value=0.012 Score=45.52 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.++|.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998754
No 443
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.59 E-value=0.0015 Score=51.43 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
...|+|+|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 444
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.58 E-value=0.0062 Score=54.40 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
-|+|+|++|+|||||+++|.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999875
No 445
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.57 E-value=0.001 Score=53.96 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=22.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 16 SNGERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
...+..|+|+|++||||||+++.|...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 334578999999999999999998754
No 446
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.57 E-value=0.0024 Score=54.33 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.-++|.|++|+||||+++.++..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998654
No 447
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.56 E-value=0.0018 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh
Q 025391 17 NGERTVVLVGRTGNGKSATGNSIL 40 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~ 40 (253)
.....|+|+|.+||||||+++.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999997
No 448
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.56 E-value=0.0014 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
...|+|+|.+||||||+++.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999874
No 449
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.55 E-value=0.0012 Score=52.80 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+.-.++|+|++|+|||||+..|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999999999984
No 450
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.55 E-value=0.0021 Score=54.92 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|.|++|+|||+|++.|+..
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999864
No 451
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.54 E-value=0.0016 Score=51.01 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
+..|+|+|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
No 452
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.53 E-value=0.0015 Score=50.47 Aligned_cols=22 Identities=18% Similarity=0.576 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 025391 20 RTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g 41 (253)
..|+|+|.+|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 453
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.51 E-value=0.0011 Score=53.15 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=36.3
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccCeEEEEEe
Q 025391 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFT 145 (253)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~l~~l~~~~g~~~~~~~ivv~~ 145 (253)
...+++|+|||+..+... ......+|.+|+++.++ ..+... ..+.+.+ ..++. ..+.+|+|
T Consensus 130 ~~yD~viiD~pp~~~~~~-------------~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~-~~~~~---~~~~~v~N 191 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEHLT-------------RGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLA-GDLGI---KKVRYVIN 191 (254)
T ss_dssp TCCSEEEEEECTTCTTCC-------------HHHHTTCSEEEEEECSS-HHHHHHHHHHHHHH-HHHTC---SCEEEEEE
T ss_pred CCCCEEEEeCCCcccHHH-------------HHHHHHCCEEEEecCCC-HHHHHHHHHHHHHH-HHcCC---ccEEEEEe
Confidence 345788999977553211 11224558899988765 333333 2222322 22332 45789999
Q ss_pred CCCC
Q 025391 146 GGDE 149 (253)
Q Consensus 146 k~D~ 149 (253)
+.+.
T Consensus 192 ~~~~ 195 (254)
T 3kjh_A 192 KVRN 195 (254)
T ss_dssp EECC
T ss_pred CCCC
Confidence 9883
No 454
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.48 E-value=0.0057 Score=51.34 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|.|++|+|||+|+++|+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4468999999999999999999754
No 455
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.47 E-value=0.002 Score=50.54 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSIL 40 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~ 40 (253)
.-.+|+|+||+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 467899999999999999874
No 456
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.47 E-value=0.0023 Score=49.07 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 025391 20 RTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g 41 (253)
..|+|+|.+|+||||+++.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 457
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.47 E-value=0.0014 Score=50.14 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 025391 20 RTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g 41 (253)
.+|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999854
No 458
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.46 E-value=0.0061 Score=57.71 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.+...|+|+|++|+|||||+++|++.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34468999999999999999999876
No 459
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.45 E-value=0.0018 Score=48.64 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 025391 21 TVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g 41 (253)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 460
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.44 E-value=0.002 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
+...|+|+|++|+||||+++.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999875
No 461
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.44 E-value=0.0021 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|+|.+|+||||+++.|.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999764
No 462
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.44 E-value=0.0056 Score=53.91 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|.|++|+|||+|+++|+..
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999865
No 463
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.40 E-value=0.016 Score=49.26 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
....++|.|++|+|||||++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999754
No 464
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.39 E-value=0.0022 Score=51.92 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
....|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999999865
No 465
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.39 E-value=0.0021 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
...|+|+|++|+||||+++.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999973
No 466
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.37 E-value=0.0038 Score=59.51 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..++|+|++|+||||+++.|+..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
No 467
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.37 E-value=0.0023 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
...|+|+|.+||||||+++.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 468
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.37 E-value=0.001 Score=60.22 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
+...|+|+|.+|||||||++.|++..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999998864
No 469
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.36 E-value=0.002 Score=50.71 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 025391 21 TVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g 41 (253)
+|+|+|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 470
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.35 E-value=0.0019 Score=48.76 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 025391 20 RTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g 41 (253)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 471
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.35 E-value=0.0017 Score=55.65 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 025391 21 TVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g 41 (253)
..+|+|+||+||||++++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 789999999999999999875
No 472
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.34 E-value=0.0024 Score=54.20 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 025391 20 RTVVLVGRTGNGKSATGNSIL 40 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~ 40 (253)
...+|+|+||+||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999874
No 473
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.34 E-value=0.00084 Score=52.61 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 474
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.34 E-value=0.0022 Score=49.25 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 025391 21 TVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g 41 (253)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 475
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.34 E-value=0.0018 Score=56.80 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~~~ 44 (253)
...++|+|+||+|||||+++|.+...
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 35789999999999999999987543
No 476
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.34 E-value=0.0017 Score=53.34 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
+.-.++|+|++|+|||||+..|++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 477
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.33 E-value=0.0016 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=16.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 478
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.33 E-value=0.0026 Score=50.78 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
.....|+|+|.+|+||||+++.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999864
No 479
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.31 E-value=0.0023 Score=49.25 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
.|+|.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998643
No 480
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.28 E-value=0.003 Score=50.49 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
....|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999765
No 481
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.23 E-value=0.0027 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 025391 21 TVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+|+|+|++||||+|....|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 482
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.23 E-value=0.0024 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 025391 20 RTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g 41 (253)
..|+|+|.+||||||+++.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999854
No 483
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.23 E-value=0.0027 Score=50.39 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 025391 21 TVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g 41 (253)
.|+|+|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 484
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.22 E-value=0.0033 Score=47.70 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
...++|.|++|+|||++++.++..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998754
No 485
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.21 E-value=0.003 Score=47.54 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g 41 (253)
-..|+|+|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999854
No 486
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.18 E-value=0.0018 Score=54.57 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 025391 21 TVVLVGRTGNGKSATGNSIL 40 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~ 40 (253)
..+|+|+||+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 78899999999999999997
No 487
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.17 E-value=0.012 Score=52.39 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...|+|.|++|+|||+++++|...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 488
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.16 E-value=0.0046 Score=49.05 Aligned_cols=23 Identities=17% Similarity=0.563 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..|+|+|++||||+|....|+..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999998754
No 489
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.13 E-value=0.0064 Score=57.12 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
....++|+|++|+|||++++.|...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998764
No 490
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.11 E-value=0.0028 Score=54.04 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
+...++|+|++|+|||||++.|++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998864
No 491
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.09 E-value=0.0043 Score=53.69 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
...|+|+|++|+|||||...|+..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHH
Confidence 367899999999999999998643
No 492
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.07 E-value=0.0026 Score=57.24 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHH--HhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNS--ILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~--l~g~ 42 (253)
+.-.++|+|+||+|||||++. +.|.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999 4554
No 493
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.025 Score=47.44 Aligned_cols=25 Identities=8% Similarity=0.124 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
....+.|.|++|+|||++++.++..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999765
No 494
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.06 E-value=0.011 Score=55.84 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 025391 17 NGERTVVLVGRTGNGKSATGNSILGRR 43 (253)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTl~n~l~g~~ 43 (253)
.+...|+|.|++|+|||.++++|++..
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHh
Confidence 344679999999999999999998763
No 495
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.04 E-value=0.0055 Score=50.80 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
+...++|+|++|+|||++++.|.+.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHH
Confidence 3457999999999999999999865
No 496
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.01 E-value=0.0044 Score=49.02 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 18 GERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 18 ~~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
....++|.|++|+|||||++.|...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998754
No 497
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.01 E-value=0.0042 Score=48.17 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..|+|.|++|+|||+|+..|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998764
No 498
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.99 E-value=0.043 Score=48.25 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 025391 20 RTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 20 ~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
..++|.|++|+|||||++.|...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999999865
No 499
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.99 E-value=0.0041 Score=48.27 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 025391 21 TVVLVGRTGNGKSATGNSILG 41 (253)
Q Consensus 21 ~i~lvG~~g~GKSTl~n~l~g 41 (253)
.|+|.|++|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999865
No 500
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.96 E-value=0.0055 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 025391 19 ERTVVLVGRTGNGKSATGNSILGR 42 (253)
Q Consensus 19 ~~~i~lvG~~g~GKSTl~n~l~g~ 42 (253)
...|+|+|++|+|||||...|+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 357899999999999999999754
Done!