Query 025392
Match_columns 253
No_of_seqs 125 out of 1207
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 09:23:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 7.9E-44 2.7E-48 300.4 14.8 221 4-250 65-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 4.7E-42 1.6E-46 288.8 19.4 222 4-248 68-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.8E-37 6E-42 260.9 16.9 194 42-250 4-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 4.5E-37 1.6E-41 259.1 13.9 183 47-250 3-194 (303)
5 1y9i_A Low temperature require 63.6 9.4 0.00032 28.5 4.4 53 8-62 102-159 (178)
6 1rfz_A Hypothetical protein AP 49.9 20 0.00068 26.5 4.1 53 8-62 104-161 (168)
7 1tlq_A Hypothetical protein YP 38.3 35 0.0012 25.5 3.9 42 22-63 115-160 (189)
8 3tgu_G UQCRQ, mitochondrial ub 17.5 43 0.0015 21.4 0.9 32 219-250 37-68 (81)
9 3cx5_H Cytochrome B-C1 complex 14.7 99 0.0034 20.3 2.2 37 214-250 42-78 (93)
10 2acm_A Mucin-1; auto-catalytic 14.0 39 0.0013 20.1 0.0 20 83-102 40-59 (66)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=7.9e-44 Score=300.41 Aligned_cols=221 Identities=20% Similarity=0.314 Sum_probs=199.0
Q ss_pred ccccccchhhhhhcccchhHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHHHhhcchHHHHHHHHhcCC---CC
Q 025392 4 LAWQCASLTYGYAIHSHTIYSVTQIENIRCWFFQENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGE---PK 80 (253)
Q Consensus 4 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~k~~~~~~~~~~~~~~~~~~ag~~a~~~~~~v~~Pld~vk~r~Q~~~~---~~ 80 (253)
..|||..+.+...++..++++.+ ||.+|+.+.+..+ ..+....+++|++|++++.++++|+|+||+|+|++.. ..
T Consensus 65 glyrG~~~~l~~~~~~~~i~f~~-ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~ 142 (303)
T 2lck_A 65 SLYNGLVAGLQRQMSFASVRIGL-YDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGR 142 (303)
T ss_dssp HHHSSHHHHHHHHHHHHHHTTTH-HHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSS
T ss_pred HHHcCCHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCC
Confidence 36999999999999999999888 8999998876422 4677889999999999999999999999999999853 34
Q ss_pred cCCcHHHHHHHHHhhcChhhhcccchHHHHHHHhhhhHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCcchHHHHHHHh
Q 025392 81 VYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGL 160 (253)
Q Consensus 81 ~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (253)
.|.+..+++++|+++||++|||||+.+.+++.+++.+++|.+||.+|+.+.+.. ....+....+++|+
T Consensus 143 ~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~------------~~~~~~~~~~~~g~ 210 (303)
T 2lck_A 143 RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN------------LMTDDLPCHFTSAF 210 (303)
T ss_dssp SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT------------SCCSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------CCCCchHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999876541 12345678899999
Q ss_pred hhhhhhhhhcccHHHHHHHHHhhcccCCCCCCccccccccCcHHHHHHHHHHhhCccccccchhhhhhccccchhhHHHH
Q 025392 161 AAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVA 240 (253)
Q Consensus 161 ~ag~~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~i~~~~ 240 (253)
+||++++++++|+|+||+|+|.+. ...|.++++++++|+++||++|||||+.++++|.+|.++++|.+
T Consensus 211 ~ag~~~~~~~~P~dvvktrlq~~~------------~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ 278 (303)
T 2lck_A 211 GAGFCTTVIASPVDVVKTRYMNSA------------LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVT 278 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC------------SSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHhcc------------ccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999986 23589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 025392 241 YEYASDWLES 250 (253)
Q Consensus 241 y~~~~~~l~~ 250 (253)
||.+|+.+.+
T Consensus 279 ye~~k~~l~~ 288 (303)
T 2lck_A 279 YEQLKRALMA 288 (303)
T ss_dssp HHHHHSCCCC
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.7e-42 Score=288.78 Aligned_cols=222 Identities=22% Similarity=0.350 Sum_probs=188.5
Q ss_pred ccccccchhhhhhcccchhHHHHHHHHHHHhhhhc-CCCC---chhHHHHHHHHHHHHHHHHhhcchHHHHHHHHhcCC-
Q 025392 4 LAWQCASLTYGYAIHSHTIYSVTQIENIRCWFFQE-NHIN---LSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGE- 78 (253)
Q Consensus 4 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~k~~~~~~-~~~~---~~~~~~~~ag~~a~~~~~~v~~Pld~vk~r~Q~~~~- 78 (253)
..|||..+++....+..++++.+ ||.+|+.+..+ +... ......+++|++|++++.++++|+|+||+|+|++..
T Consensus 68 glyrG~~~~l~~~~~~~~~~f~~-ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~ 146 (297)
T 1okc_A 68 SFWRGNLANVIRYFPTQALNFAF-KDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 146 (297)
T ss_dssp GGGTTTHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred heecccHHHHHHHHHHHHHHHHH-HHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC
Confidence 46999999999999999999888 89999954332 2111 245678999999999999999999999999999853
Q ss_pred ---CCcCCcHHHHHHHHHhhcChhhhcccchHHHHHHHhhhhHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCcchHHH
Q 025392 79 ---PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQL 155 (253)
Q Consensus 79 ---~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (253)
...|.+..+++++|+++||++|||||+.+.+++.+++.+++|.+||.+|+.+.+. ...+....
T Consensus 147 ~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--------------~~~~~~~~ 212 (297)
T 1okc_A 147 GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--------------KNVHIIVS 212 (297)
T ss_dssp STTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--------------GCSCHHHH
T ss_pred CCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--------------CCccHHHH
Confidence 3468999999999999999999999999999999999999999999999976543 12456778
Q ss_pred HHHHhhhhhhhhhhcccHHHHHHHHHhhcccCCCCCCccccccccCcHHHHHHHHHHhhCccccccchhhhhhccccchh
Q 025392 156 FVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGA 235 (253)
Q Consensus 156 ~~~g~~ag~~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~ 235 (253)
+++|++||++++++++|+|+||+|+|++.... .....|+++++++++|+++||++|||||+.|+++|. +.++
T Consensus 213 ~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~-------~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~ 284 (297)
T 1okc_A 213 WMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK-------GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGA 284 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-------GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC-------CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccce
Confidence 99999999999999999999999999975211 113468999999999999999999999999999996 5789
Q ss_pred hHHHHHHHHHHHH
Q 025392 236 VTFVAYEYASDWL 248 (253)
Q Consensus 236 i~~~~y~~~~~~l 248 (253)
+.|.+||.+|+.+
T Consensus 285 ~~f~~ye~~k~~l 297 (297)
T 1okc_A 285 FVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHTC----
T ss_pred eeehHHHHHHhhC
Confidence 9999999998754
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.8e-37 Score=260.89 Aligned_cols=194 Identities=21% Similarity=0.317 Sum_probs=166.4
Q ss_pred CchhHHHHHHHHHHHHHHHHhhcchHHHHHHHHhcCC------CCcCCcHHHHHHHHHhhcChhhhcccchHHHHHHHhh
Q 025392 42 NLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGE------PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPY 115 (253)
Q Consensus 42 ~~~~~~~~~ag~~a~~~~~~v~~Pld~vk~r~Q~~~~------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~ 115 (253)
..+.+..+++|+++++++.++++|+|+||+|+|++.. ...|++..+++++|+++||++|||||+.+.+++.+++
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 4567889999999999999999999999999999853 2468999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCcchHHHHHHHhhhhhhhhhhcccHHHHHHHHHhhcccCCCCCCccc
Q 025392 116 AGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARV 195 (253)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~ 195 (253)
.+++|.+||.+|+.+..... . ...........+++|++||++++++++|+|+||+|+|++.....
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~----~----~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~------- 148 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVD----R----HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGA------- 148 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC----T----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSST-------
T ss_pred HHHHHHHHHHHHHHhccccC----c----ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCC-------
Confidence 99999999999986543210 0 00111245678999999999999999999999999999862211
Q ss_pred cccccCcHHHHHHHHHHhhCccccccchhhhhhccccchhhHHHHHHHHHHHHhh
Q 025392 196 EHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLES 250 (253)
Q Consensus 196 ~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~i~~~~y~~~~~~l~~ 250 (253)
....|+++++++++|+++||++|||||+.++++|.+|.++++|.+||.+|+.+.+
T Consensus 149 ~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 149 AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp TTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred cCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1346899999999999999999999999999999999999999999999987643
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.5e-37 Score=259.08 Aligned_cols=183 Identities=28% Similarity=0.483 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHhcCC---------CCcCCcHHHHHHHHHhhcChhhhcccchHHHHHHHhhhh
Q 025392 47 LSYVSGALAGCAATVGSYPFDLLRTILASQGE---------PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAG 117 (253)
Q Consensus 47 ~~~~ag~~a~~~~~~v~~Pld~vk~r~Q~~~~---------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~ 117 (253)
..+++|++|++++.++++|+|+||+|+|++.. ..+|++..+++++|+++||+++||||+.+.+++.+++.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 36899999999999999999999999999854 246899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCcchHHHHHHHhhhhhhhhhhcccHHHHHHHHHhhcccCCCCCCccccc
Q 025392 118 LQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEH 197 (253)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~ 197 (253)
++|.+||.+|+.+.+.. ...+....+++|++||++++++++|+|+||+|+|++.... ..
T Consensus 83 i~f~~ye~~k~~~~~~~-------------~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~--------~~ 141 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS-------------EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG--------GG 141 (303)
T ss_dssp HTTTHHHHHHHHHSCCC-------------SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC--------CS
T ss_pred HHHHHHHHHHHHHhcCC-------------cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC--------CC
Confidence 99999999999875431 1256788999999999999999999999999999987321 12
Q ss_pred cccCcHHHHHHHHHHhhCccccccchhhhhhccccchhhHHHHHHHHHHHHhh
Q 025392 198 RAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLES 250 (253)
Q Consensus 198 ~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~i~~~~y~~~~~~l~~ 250 (253)
..|++.++++++|+++||++|||||+.+++++.+|.++++|.+||.+|+.+.+
T Consensus 142 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~ 194 (303)
T 2lck_A 142 RRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 194 (303)
T ss_dssp SSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999998754
No 5
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=63.64 E-value=9.4 Score=28.49 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=36.3
Q ss_pred ccchhhhhhcccchhHHHHHHHHHHHhhhhc-----CCCCchhHHHHHHHHHHHHHHHHh
Q 025392 8 CASLTYGYAIHSHTIYSVTQIENIRCWFFQE-----NHINLSAYLSYVSGALAGCAATVG 62 (253)
Q Consensus 8 g~~~~~~~~~~~~~l~~~~~~~~~k~~~~~~-----~~~~~~~~~~~~ag~~a~~~~~~v 62 (253)
|++++..++..+.++|.+ ||..|...-.. +..-...+.+++||..|+++..++
T Consensus 102 G~~Ia~~~g~~gf~~Fr~--fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l~ 159 (178)
T 1y9i_A 102 ALSIVNVYGSIGFTNYGY--IDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLA 159 (178)
T ss_dssp HHHHHGGGCGGGHHHHHH--HHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 455555566667777766 79999765321 223457889999999999877654
No 6
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=49.94 E-value=20 Score=26.50 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=36.6
Q ss_pred ccchhhhhhcccchhHHHHHHHHHHHhhhh-----cCCCCchhHHHHHHHHHHHHHHHHh
Q 025392 8 CASLTYGYAIHSHTIYSVTQIENIRCWFFQ-----ENHINLSAYLSYVSGALAGCAATVG 62 (253)
Q Consensus 8 g~~~~~~~~~~~~~l~~~~~~~~~k~~~~~-----~~~~~~~~~~~~~ag~~a~~~~~~v 62 (253)
|++++......+..+|.+ ||..|...-. .+..-.....+++||..|+++..++
T Consensus 104 G~~Ia~~~g~~gf~~Fr~--fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l~ 161 (168)
T 1rfz_A 104 ALSIVNVYGSIGFTNYGY--IDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRLA 161 (168)
T ss_dssp HHHHHHTTCTTHHHHHHH--HHHHCCTHHHHHHCSSSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHhccchhHHHhhcccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 555666666677777776 7998875432 1234467889999999998877554
No 7
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=38.31 E-value=35 Score=25.53 Aligned_cols=42 Identities=7% Similarity=-0.013 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhh-hhcC---CCCchhHHHHHHHHHHHHHHHHhh
Q 025392 22 IYSVTQIENIRCWF-FQEN---HINLSAYLSYVSGALAGCAATVGS 63 (253)
Q Consensus 22 l~~~~~~~~~k~~~-~~~~---~~~~~~~~~~~ag~~a~~~~~~v~ 63 (253)
++.|.+||..|.-. +.-+ ..-...+.++++|.+|++.+.+.-
T Consensus 115 ~tNfGylDk~KpGIi~~Ld~k~~~v~tFLDDiVgaiaAaaaSRlah 160 (189)
T 1tlq_A 115 LTNFGYLDKEKIGIIKELDESPDGIHTFLDDIVAALAAAAASRIAH 160 (189)
T ss_dssp HHHHHHHHHSCCTHHHHTSSSCSCCCTTHHHHHHHHHHHHHHHHHT
T ss_pred eeecccccccCcceeccccCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence 33444478888433 3322 124678999999999998888863
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=17.55 E-value=43 Score=21.44 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=23.8
Q ss_pred cccchhhhhhccccchhhHHHHHHHHHHHHhh
Q 025392 219 LYKGIVPSTVKAAPAGAVTFVAYEYASDWLES 250 (253)
Q Consensus 219 ly~G~~~~l~~~~~~~~i~~~~y~~~~~~l~~ 250 (253)
.+|-+..+++..+|.-++.+.+|++.++.-+.
T Consensus 37 ~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 37 VWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444466788889999999999998876554
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=14.69 E-value=99 Score=20.29 Aligned_cols=37 Identities=3% Similarity=0.062 Sum_probs=29.0
Q ss_pred hCccccccchhhhhhccccchhhHHHHHHHHHHHHhh
Q 025392 214 EGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLES 250 (253)
Q Consensus 214 ~G~~gly~G~~~~l~~~~~~~~i~~~~y~~~~~~l~~ 250 (253)
+|+...+|-+..+++..+|.-++...+|+..++.-+.
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~ 78 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEF 78 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHH
Confidence 5666677777777888888889999999998876544
No 10
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=14.05 E-value=39 Score=20.15 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=16.2
Q ss_pred CcHHHHHHHHHhhcChhhhc
Q 025392 83 PTMRSAFVDIISTRGFRGLY 102 (253)
Q Consensus 83 ~~~~~~~~~i~~~~G~~gly 102 (253)
+++...+.+|++++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 45778888899999988875
Done!