Query 025393
Match_columns 253
No_of_seqs 337 out of 1363
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 1.4E-18 3.1E-23 143.0 14.3 81 153-241 34-114 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.1E-16 2.3E-21 147.5 12.5 82 153-242 269-350 (352)
3 TIGR01659 sex-lethal sex-letha 99.7 6.5E-16 1.4E-20 143.9 16.1 81 152-240 106-186 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.7E-16 3.7E-21 146.1 10.9 81 153-241 3-83 (352)
5 PF00076 RRM_1: RNA recognitio 99.7 5.3E-16 1.2E-20 109.7 9.4 67 156-226 1-67 (70)
6 KOG0121 Nuclear cap-binding pr 99.7 2E-16 4.3E-21 126.4 7.1 80 152-239 35-114 (153)
7 TIGR01659 sex-lethal sex-letha 99.6 1.4E-15 3E-20 141.7 11.4 83 153-241 193-275 (346)
8 KOG0107 Alternative splicing f 99.6 3.4E-15 7.5E-20 124.9 8.7 77 153-242 10-86 (195)
9 KOG0122 Translation initiation 99.6 4.6E-15 1E-19 129.7 9.1 82 152-241 188-269 (270)
10 PLN03120 nucleic acid binding 99.5 3.1E-14 6.7E-19 126.9 10.3 76 153-240 4-79 (260)
11 PF14259 RRM_6: RNA recognitio 99.5 6.6E-14 1.4E-18 100.0 9.9 66 156-225 1-66 (70)
12 KOG0113 U1 small nuclear ribon 99.5 6.2E-14 1.3E-18 125.7 11.3 84 150-241 98-181 (335)
13 KOG0114 Predicted RNA-binding 99.5 5.5E-14 1.2E-18 108.7 9.4 84 145-239 10-93 (124)
14 TIGR01645 half-pint poly-U bin 99.5 6.3E-14 1.4E-18 138.3 10.8 81 153-241 204-284 (612)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.5 9.6E-14 2.1E-18 134.1 11.7 81 152-240 294-374 (509)
16 TIGR01622 SF-CC1 splicing fact 99.5 7.6E-14 1.6E-18 133.2 10.6 80 153-240 186-265 (457)
17 TIGR01645 half-pint poly-U bin 99.5 5.8E-14 1.3E-18 138.5 9.9 80 153-240 107-186 (612)
18 KOG0105 Alternative splicing f 99.5 3.6E-14 7.7E-19 120.0 7.2 78 153-241 6-83 (241)
19 TIGR01628 PABP-1234 polyadenyl 99.5 8.3E-14 1.8E-18 136.7 10.5 78 155-240 2-79 (562)
20 TIGR01648 hnRNP-R-Q heterogene 99.5 9.6E-14 2.1E-18 136.5 10.7 79 152-238 57-135 (578)
21 KOG0125 Ataxin 2-binding prote 99.5 9.2E-14 2E-18 126.0 8.5 79 153-241 96-174 (376)
22 smart00362 RRM_2 RNA recogniti 99.5 2.7E-13 5.8E-18 94.3 8.9 71 155-235 1-71 (72)
23 TIGR01628 PABP-1234 polyadenyl 99.5 1.8E-13 3.8E-18 134.4 10.9 81 152-241 284-364 (562)
24 KOG0149 Predicted RNA-binding 99.5 7.5E-14 1.6E-18 121.6 6.9 68 154-225 13-80 (247)
25 TIGR01622 SF-CC1 splicing fact 99.5 2.8E-13 6.2E-18 129.2 10.8 81 152-241 88-168 (457)
26 KOG4207 Predicted splicing fac 99.5 1.6E-13 3.5E-18 117.8 7.6 81 153-241 13-93 (256)
27 TIGR01648 hnRNP-R-Q heterogene 99.5 5.3E-13 1.2E-17 131.3 12.1 73 153-241 233-307 (578)
28 COG0724 RNA-binding proteins ( 99.4 4.6E-13 1E-17 114.6 9.9 79 153-239 115-193 (306)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 7E-13 1.5E-17 128.4 10.9 77 152-241 274-351 (481)
30 KOG0148 Apoptosis-promoting RN 99.4 5.3E-13 1.2E-17 118.4 8.9 75 153-241 164-238 (321)
31 PLN03213 repressor of silencin 99.4 4.8E-13 1E-17 126.8 9.2 76 153-240 10-87 (759)
32 PLN03121 nucleic acid binding 99.4 9.2E-13 2E-17 116.0 9.6 75 153-239 5-79 (243)
33 smart00360 RRM RNA recognition 99.4 1.1E-12 2.4E-17 90.7 8.0 70 158-235 1-70 (71)
34 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 9E-13 2E-17 127.6 10.3 85 152-241 393-480 (481)
35 KOG0111 Cyclophilin-type pepti 99.4 1.9E-13 4.1E-18 118.4 4.6 88 151-246 8-95 (298)
36 cd00590 RRM RRM (RNA recogniti 99.4 3.1E-12 6.8E-17 89.3 9.8 74 155-237 1-74 (74)
37 KOG0144 RNA-binding protein CU 99.4 9.9E-13 2.1E-17 122.8 8.7 85 153-242 34-118 (510)
38 KOG0144 RNA-binding protein CU 99.4 3.8E-13 8.3E-18 125.6 5.4 87 153-245 124-210 (510)
39 KOG0117 Heterogeneous nuclear 99.4 3.1E-12 6.8E-17 119.9 10.4 81 153-240 83-163 (506)
40 KOG0108 mRNA cleavage and poly 99.4 1.3E-12 2.9E-17 124.5 7.9 82 154-243 19-100 (435)
41 KOG0126 Predicted RNA-binding 99.4 1.2E-13 2.6E-18 116.4 0.6 80 153-240 35-114 (219)
42 KOG0148 Apoptosis-promoting RN 99.3 2.5E-12 5.5E-17 114.2 7.8 81 153-241 62-142 (321)
43 KOG0130 RNA-binding protein RB 99.3 3.7E-12 8E-17 103.0 7.6 83 153-243 72-154 (170)
44 KOG0131 Splicing factor 3b, su 99.3 2.1E-12 4.6E-17 108.8 6.2 80 152-239 8-87 (203)
45 KOG0145 RNA-binding protein EL 99.3 5.4E-12 1.2E-16 111.7 8.4 81 153-241 41-121 (360)
46 KOG0145 RNA-binding protein EL 99.3 1.1E-11 2.5E-16 109.7 9.8 80 153-240 278-357 (360)
47 KOG4206 Spliceosomal protein s 99.3 6.1E-12 1.3E-16 109.1 7.7 78 153-241 9-90 (221)
48 KOG0127 Nucleolar protein fibr 99.3 8.1E-12 1.8E-16 119.6 8.5 80 153-241 117-196 (678)
49 KOG0117 Heterogeneous nuclear 99.3 7.8E-12 1.7E-16 117.3 7.5 73 153-241 259-331 (506)
50 PF13893 RRM_5: RNA recognitio 99.3 3.9E-11 8.4E-16 82.6 8.4 56 170-238 1-56 (56)
51 KOG0109 RNA-binding protein LA 99.2 8.2E-12 1.8E-16 111.9 5.3 72 154-241 3-74 (346)
52 KOG0415 Predicted peptidyl pro 99.2 4.4E-11 9.6E-16 109.7 7.1 80 153-240 239-318 (479)
53 KOG0127 Nucleolar protein fibr 99.2 9.2E-11 2E-15 112.5 8.7 80 153-240 292-377 (678)
54 KOG0132 RNA polymerase II C-te 99.2 6.4E-11 1.4E-15 117.2 7.7 80 152-245 420-499 (894)
55 KOG1457 RNA binding protein (c 99.1 2.4E-10 5.2E-15 99.4 9.9 87 150-241 31-118 (284)
56 smart00361 RRM_1 RNA recogniti 99.1 2E-10 4.4E-15 82.9 7.7 63 167-235 2-69 (70)
57 KOG0146 RNA-binding protein ET 99.1 8.7E-11 1.9E-15 104.5 5.9 82 152-241 284-365 (371)
58 KOG0147 Transcriptional coacti 99.1 1.4E-10 2.9E-15 111.3 6.2 78 155-240 280-357 (549)
59 KOG4212 RNA-binding protein hn 99.1 3.1E-10 6.8E-15 106.5 8.3 78 154-240 45-123 (608)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.0 8.6E-10 1.9E-14 106.6 9.4 84 152-240 408-501 (509)
61 KOG0146 RNA-binding protein ET 99.0 5E-10 1.1E-14 99.7 6.5 85 153-243 19-103 (371)
62 KOG0131 Splicing factor 3b, su 99.0 4.8E-10 1E-14 94.7 5.8 84 153-244 96-180 (203)
63 KOG0124 Polypyrimidine tract-b 99.0 3.1E-10 6.7E-15 104.6 4.9 75 154-236 114-188 (544)
64 KOG4212 RNA-binding protein hn 99.0 1.9E-09 4.1E-14 101.4 10.2 73 153-238 536-608 (608)
65 KOG0110 RNA-binding protein (R 99.0 3.6E-10 7.8E-15 111.1 4.8 81 153-241 613-693 (725)
66 KOG0109 RNA-binding protein LA 99.0 5.1E-10 1.1E-14 100.5 5.2 74 152-241 77-150 (346)
67 KOG0123 Polyadenylate-binding 99.0 1.7E-09 3.6E-14 101.8 8.4 75 156-241 79-153 (369)
68 KOG0153 Predicted RNA-binding 99.0 1.6E-09 3.4E-14 99.2 7.9 75 153-241 228-303 (377)
69 KOG4208 Nucleolar RNA-binding 99.0 1.6E-09 3.5E-14 93.0 7.4 80 153-240 49-129 (214)
70 KOG0110 RNA-binding protein (R 98.9 2.4E-09 5.2E-14 105.4 7.9 80 155-239 517-596 (725)
71 KOG0533 RRM motif-containing p 98.8 1.3E-08 2.9E-13 90.3 8.1 80 153-241 83-162 (243)
72 KOG4209 Splicing factor RNPS1, 98.8 1.7E-08 3.7E-13 89.3 7.5 80 153-241 101-180 (231)
73 KOG1457 RNA binding protein (c 98.8 6E-09 1.3E-13 90.8 4.0 69 152-227 209-277 (284)
74 KOG0124 Polypyrimidine tract-b 98.7 9.7E-09 2.1E-13 94.9 5.0 167 42-241 122-290 (544)
75 KOG0151 Predicted splicing reg 98.7 2.3E-08 5.1E-13 98.5 7.8 93 141-240 164-256 (877)
76 KOG0123 Polyadenylate-binding 98.7 3.1E-08 6.7E-13 93.3 8.0 73 154-240 2-74 (369)
77 KOG4454 RNA binding protein (R 98.6 9E-09 2E-13 89.4 1.7 76 153-238 9-84 (267)
78 KOG0106 Alternative splicing f 98.6 3.1E-08 6.7E-13 86.5 5.0 71 155-241 3-73 (216)
79 KOG4205 RNA-binding protein mu 98.6 2.9E-08 6.4E-13 91.2 5.0 63 152-217 5-67 (311)
80 KOG4661 Hsp27-ERE-TATA-binding 98.6 5.5E-08 1.2E-12 94.1 7.0 81 153-241 405-485 (940)
81 KOG0116 RasGAP SH3 binding pro 98.6 9.4E-08 2E-12 91.0 8.4 80 152-240 287-366 (419)
82 KOG4660 Protein Mei2, essentia 98.6 4.9E-08 1.1E-12 94.1 5.0 67 152-226 74-140 (549)
83 KOG4206 Spliceosomal protein s 98.6 1.9E-07 4E-12 81.4 7.7 76 152-239 145-220 (221)
84 KOG1548 Transcription elongati 98.5 2.8E-07 6E-12 84.7 8.3 81 152-241 133-221 (382)
85 KOG1190 Polypyrimidine tract-b 98.4 2E-06 4.2E-11 80.7 11.3 77 153-242 297-374 (492)
86 KOG0226 RNA-binding proteins [ 98.4 3.2E-07 7E-12 81.3 4.5 77 153-237 190-266 (290)
87 PF04059 RRM_2: RNA recognitio 98.3 4.7E-06 1E-10 64.3 9.4 85 154-242 2-88 (97)
88 KOG4205 RNA-binding protein mu 98.3 8.1E-07 1.8E-11 81.8 5.4 70 152-225 96-165 (311)
89 KOG1995 Conserved Zn-finger pr 98.2 3.6E-06 7.9E-11 77.7 7.6 81 153-241 66-154 (351)
90 KOG1456 Heterogeneous nuclear 98.2 8.3E-06 1.8E-10 75.9 9.1 78 153-241 120-199 (494)
91 PF11608 Limkain-b1: Limkain b 98.2 1.2E-05 2.5E-10 60.5 8.2 69 154-240 3-76 (90)
92 KOG1190 Polypyrimidine tract-b 98.1 7.5E-06 1.6E-10 76.9 8.2 78 152-240 413-490 (492)
93 KOG0120 Splicing factor U2AF, 98.1 2.6E-06 5.6E-11 82.6 3.5 81 152-240 288-368 (500)
94 KOG4211 Splicing factor hnRNP- 98.1 8.9E-06 1.9E-10 77.8 7.0 57 154-216 11-67 (510)
95 KOG4307 RNA binding protein RB 98.0 8.3E-05 1.8E-09 73.9 12.9 76 153-237 867-943 (944)
96 KOG4210 Nuclear localization s 97.9 1.2E-05 2.5E-10 73.5 4.8 80 153-241 184-264 (285)
97 PF08777 RRM_3: RNA binding mo 97.8 5.5E-05 1.2E-09 59.2 6.7 59 154-221 2-60 (105)
98 KOG1855 Predicted RNA-binding 97.8 3.4E-05 7.3E-10 72.9 5.3 71 152-222 230-310 (484)
99 KOG0106 Alternative splicing f 97.7 2.3E-05 5E-10 68.6 3.0 69 153-237 99-167 (216)
100 KOG2314 Translation initiation 97.7 7.7E-05 1.7E-09 72.6 6.4 76 153-236 58-139 (698)
101 KOG0147 Transcriptional coacti 97.6 1.2E-05 2.6E-10 77.7 0.3 80 152-240 178-257 (549)
102 KOG4849 mRNA cleavage factor I 97.6 5.3E-05 1.1E-09 70.1 3.7 80 153-239 80-161 (498)
103 KOG4211 Splicing factor hnRNP- 97.5 0.00031 6.7E-09 67.5 8.2 62 153-217 103-164 (510)
104 COG5175 MOT2 Transcriptional r 97.5 0.00028 6.2E-09 65.2 7.5 83 153-240 114-202 (480)
105 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00028 6.1E-09 48.4 5.0 52 154-215 2-53 (53)
106 KOG1456 Heterogeneous nuclear 97.4 0.00092 2E-08 62.6 9.7 77 152-241 286-363 (494)
107 KOG2416 Acinus (induces apopto 97.2 0.00031 6.8E-09 68.8 4.1 79 151-240 442-521 (718)
108 KOG0129 Predicted RNA-binding 97.1 0.0014 3E-08 63.5 6.9 66 152-218 258-326 (520)
109 KOG0112 Large RNA-binding prot 97.1 0.00078 1.7E-08 68.8 5.4 79 153-243 455-533 (975)
110 KOG4676 Splicing factor, argin 97.0 0.00066 1.4E-08 63.8 4.2 71 154-225 8-78 (479)
111 KOG0128 RNA-binding protein SA 97.0 0.00035 7.7E-09 70.8 1.9 79 153-240 736-814 (881)
112 KOG0129 Predicted RNA-binding 96.9 0.0028 6E-08 61.4 7.1 67 147-216 364-431 (520)
113 KOG1548 Transcription elongati 96.9 0.0032 6.9E-08 58.4 7.1 75 152-238 264-349 (382)
114 KOG0120 Splicing factor U2AF, 96.8 0.0038 8.2E-08 60.9 7.6 63 170-238 426-489 (500)
115 PF08675 RNA_bind: RNA binding 96.8 0.0096 2.1E-07 44.8 7.8 55 153-219 9-63 (87)
116 KOG0105 Alternative splicing f 96.6 0.018 3.9E-07 49.5 9.4 63 153-225 115-177 (241)
117 KOG3152 TBP-binding protein, a 96.6 0.0016 3.4E-08 58.2 2.7 75 153-227 74-157 (278)
118 KOG1365 RNA-binding protein Fu 96.5 0.0033 7.2E-08 59.1 4.5 69 153-225 280-351 (508)
119 KOG1365 RNA-binding protein Fu 96.5 0.013 2.8E-07 55.2 8.3 60 154-217 162-225 (508)
120 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.017 3.7E-07 44.8 7.6 78 153-239 6-90 (100)
121 PF08952 DUF1866: Domain of un 96.2 0.019 4E-07 47.5 7.1 54 169-239 52-105 (146)
122 KOG4307 RNA binding protein RB 96.2 0.0053 1.2E-07 61.5 4.4 84 146-237 427-510 (944)
123 PF10309 DUF2414: Protein of u 96.2 0.02 4.4E-07 40.6 6.0 54 154-218 6-62 (62)
124 PF03467 Smg4_UPF3: Smg-4/UPF3 95.9 0.024 5.3E-07 48.2 6.8 88 153-241 7-98 (176)
125 KOG2202 U2 snRNP splicing fact 95.7 0.0046 9.9E-08 55.2 1.5 62 170-240 85-147 (260)
126 KOG0115 RNA-binding protein p5 95.7 0.011 2.4E-07 52.9 3.8 65 154-222 32-96 (275)
127 KOG0128 RNA-binding protein SA 95.7 0.00078 1.7E-08 68.4 -4.1 69 153-224 667-735 (881)
128 KOG2193 IGF-II mRNA-binding pr 95.6 0.011 2.4E-07 56.3 3.7 74 154-240 2-75 (584)
129 PF07576 BRAP2: BRCA1-associat 95.6 0.3 6.4E-06 38.5 11.1 80 153-239 13-93 (110)
130 KOG1996 mRNA splicing factor [ 95.4 0.045 9.7E-07 50.1 6.4 65 167-238 300-364 (378)
131 KOG4574 RNA-binding protein (c 95.3 0.0099 2.2E-07 60.7 2.2 73 156-240 301-373 (1007)
132 KOG0112 Large RNA-binding prot 94.9 0.0058 1.2E-07 62.7 -0.8 78 152-238 371-448 (975)
133 PF04847 Calcipressin: Calcipr 94.6 0.064 1.4E-06 46.1 5.0 62 166-241 8-71 (184)
134 KOG2591 c-Mpl binding protein, 94.4 0.13 2.9E-06 50.6 7.2 64 152-225 174-246 (684)
135 KOG2068 MOT2 transcription fac 94.1 0.027 5.8E-07 52.1 1.9 82 153-241 77-163 (327)
136 PF15023 DUF4523: Protein of u 94.0 0.24 5.2E-06 41.0 7.0 71 153-239 86-160 (166)
137 KOG2253 U1 snRNP complex, subu 92.6 0.22 4.8E-06 49.9 5.6 63 153-227 40-102 (668)
138 KOG4660 Protein Mei2, essentia 92.6 0.18 3.9E-06 49.5 4.8 86 153-242 361-474 (549)
139 KOG2318 Uncharacterized conser 91.5 0.7 1.5E-05 45.9 7.5 84 152-238 173-305 (650)
140 PF03880 DbpA: DbpA RNA bindin 91.5 1.1 2.4E-05 32.4 6.9 66 155-238 2-74 (74)
141 KOG2135 Proteins containing th 90.3 0.15 3.2E-06 49.3 1.7 73 153-240 372-445 (526)
142 KOG4210 Nuclear localization s 88.7 0.25 5.5E-06 45.2 1.9 71 152-225 87-157 (285)
143 KOG0804 Cytoplasmic Zn-finger 87.0 2.6 5.6E-05 40.9 7.5 71 153-228 74-145 (493)
144 PF11767 SET_assoc: Histone ly 82.9 5.3 0.00012 28.6 5.9 50 164-225 11-60 (66)
145 KOG4285 Mitotic phosphoprotein 82.3 2 4.4E-05 39.6 4.4 60 156-226 200-259 (350)
146 KOG4676 Splicing factor, argin 73.7 0.67 1.5E-05 44.1 -1.3 65 153-225 151-215 (479)
147 KOG2193 IGF-II mRNA-binding pr 70.0 0.21 4.6E-06 47.9 -5.5 77 152-239 79-155 (584)
148 COG5638 Uncharacterized conser 68.0 14 0.0003 35.8 6.0 85 151-238 144-295 (622)
149 KOG4019 Calcineurin-mediated s 66.1 4.4 9.5E-05 34.8 2.1 74 154-240 11-89 (193)
150 KOG4454 RNA binding protein (R 56.5 2.7 6E-05 37.2 -0.8 68 154-225 81-152 (267)
151 PF03468 XS: XS domain; Inter 54.1 12 0.00027 29.6 2.7 50 155-210 10-68 (116)
152 COG0724 RNA-binding proteins ( 53.8 19 0.00042 30.0 4.0 63 152-217 224-286 (306)
153 KOG2891 Surface glycoprotein [ 53.0 8.9 0.00019 35.3 1.9 93 149-241 145-268 (445)
154 KOG4483 Uncharacterized conser 51.8 17 0.00038 34.9 3.7 53 154-216 392-445 (528)
155 KOG2295 C2H2 Zn-finger protein 46.6 3.3 7.2E-05 41.1 -2.0 71 153-226 231-301 (648)
156 KOG4410 5-formyltetrahydrofola 41.6 27 0.00059 32.3 3.1 48 154-209 331-378 (396)
157 KOG1295 Nonsense-mediated deca 37.0 44 0.00096 31.8 3.9 73 153-226 7-80 (376)
158 COG4907 Predicted membrane pro 36.7 31 0.00067 33.9 2.8 19 55-73 540-560 (595)
159 PF15513 DUF4651: Domain of un 34.6 79 0.0017 22.4 3.9 19 168-186 9-27 (62)
160 PF00403 HMA: Heavy-metal-asso 34.5 1.4E+02 0.003 19.8 5.9 54 155-217 1-58 (62)
161 PF07292 NID: Nmi/IFP 35 domai 30.2 35 0.00077 25.8 1.7 23 153-175 52-74 (88)
162 KOG4365 Uncharacterized conser 29.9 9.7 0.00021 37.0 -1.7 78 154-240 4-81 (572)
163 KOG4008 rRNA processing protei 29.9 33 0.00072 30.8 1.7 32 153-184 40-71 (261)
164 PF10567 Nab6_mRNP_bdg: RNA-re 28.4 81 0.0018 29.2 4.0 84 153-239 15-106 (309)
165 PF11411 DNA_ligase_IV: DNA li 28.1 37 0.00081 21.4 1.3 16 163-178 19-34 (36)
166 PF14893 PNMA: PNMA 28.0 47 0.001 31.2 2.5 23 153-175 18-40 (331)
167 PRK11634 ATP-dependent RNA hel 28.0 1.7E+02 0.0037 29.8 6.7 69 154-239 487-561 (629)
168 KOG3424 40S ribosomal protein 27.8 1E+02 0.0022 24.8 4.0 48 164-212 34-83 (132)
169 PF08156 NOP5NT: NOP5NT (NUC12 22.7 27 0.00059 24.9 -0.1 39 168-219 27-65 (67)
170 PF04026 SpoVG: SpoVG; InterP 22.1 1.7E+02 0.0037 21.8 4.1 47 179-238 2-48 (84)
171 KOG1134 Uncharacterized conser 21.9 1.1E+02 0.0023 31.9 4.0 38 197-241 304-341 (728)
172 PRK14548 50S ribosomal protein 21.7 2.1E+02 0.0047 21.3 4.6 56 157-218 24-81 (84)
173 TIGR03636 L23_arch archaeal ri 21.7 2.3E+02 0.005 20.8 4.7 56 156-217 16-73 (77)
174 KOG0226 RNA-binding proteins [ 21.7 10 0.00022 34.4 -3.0 74 25-109 189-262 (290)
175 COG0030 KsgA Dimethyladenosine 21.5 1.2E+02 0.0026 27.5 3.8 33 154-186 96-128 (259)
176 KOG4357 Uncharacterized conser 21.5 4.5E+02 0.0098 21.4 8.3 38 200-243 115-152 (164)
177 PRK13259 regulatory protein Sp 20.0 1.7E+02 0.0038 22.4 3.8 48 179-239 2-49 (94)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=1.4e-18 Score=143.04 Aligned_cols=81 Identities=19% Similarity=0.432 Sum_probs=75.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+++|||+|||+++||++|+++|++||.|.+++|+.+..+ ++++|||||+|++.++|++||+.||++.|++ +.
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kGfaFV~F~~~e~A~~Al~~lng~~i~G-----r~ 105 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET---GRSRGFGFVNFNDEGAATAAISEMDGKELNG-----RH 105 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEECC-----EE
Confidence 579999999999999999999999999999999977654 8899999999999999999999999999998 67
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|+|++.+
T Consensus 106 l~V~~a~~~ 114 (144)
T PLN03134 106 IRVNPANDR 114 (144)
T ss_pred EEEEeCCcC
Confidence 999999764
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=1.1e-16 Score=147.50 Aligned_cols=82 Identities=23% Similarity=0.402 Sum_probs=76.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+.+|||+|||+++++++|+++|++||.|.+|+|+.+..+ |++||||||+|.+.++|.+||+.|||..|.+ |.
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t---~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g-----r~ 340 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTT---NQCKGYGFVSMTNYDEAAMAILSLNGYTLGN-----RV 340 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCC---CCccceEEEEECCHHHHHHHHHHhCCCEECC-----eE
Confidence 457999999999999999999999999999999987644 8899999999999999999999999999998 68
Q ss_pred EEEEeecCCC
Q 025393 233 LRLQFSRNPG 242 (253)
Q Consensus 233 L~V~~ak~~~ 242 (253)
|+|+|+.+..
T Consensus 341 i~V~~~~~~~ 350 (352)
T TIGR01661 341 LQVSFKTNKA 350 (352)
T ss_pred EEEEEccCCC
Confidence 9999998753
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.69 E-value=6.5e-16 Score=143.90 Aligned_cols=81 Identities=28% Similarity=0.443 Sum_probs=75.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||+++||++|+++|++||.|++|+|+.+..+ ++++|||||+|.++++|++||+.||+..|.+ +
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~t---g~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g-----r 177 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKT---GYSFGYAFVDFGSEADSQRAIKNLNGITVRN-----K 177 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CccCcEEEEEEccHHHHHHHHHHcCCCccCC-----c
Confidence 4689999999999999999999999999999999977654 8899999999999999999999999999988 5
Q ss_pred cEEEEeecC
Q 025393 232 FLRLQFSRN 240 (253)
Q Consensus 232 ~L~V~~ak~ 240 (253)
+|+|+|++.
T Consensus 178 ~i~V~~a~p 186 (346)
T TIGR01659 178 RLKVSYARP 186 (346)
T ss_pred eeeeecccc
Confidence 799999875
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=1.7e-16 Score=146.08 Aligned_cols=81 Identities=26% Similarity=0.479 Sum_probs=75.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||.+++|++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++||+.|||+.|.+ +.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~---g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g-----~~ 74 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVT---GQSLGYGFVNYVRPEDAEKAVNSLNGLRLQN-----KT 74 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCC---CccceEEEEEECcHHHHHHHHhhcccEEECC-----ee
Confidence 589999999999999999999999999999999987654 8899999999999999999999999999998 57
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|+|++..
T Consensus 75 i~v~~a~~~ 83 (352)
T TIGR01661 75 IKVSYARPS 83 (352)
T ss_pred EEEEeeccc
Confidence 999999754
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=5.3e-16 Score=109.72 Aligned_cols=67 Identities=31% Similarity=0.536 Sum_probs=62.4
Q ss_pred EEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025393 156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 226 (253)
Q Consensus 156 LfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~ 226 (253)
|||+|||+++|+++|+++|++||.|..+++..+.. ++.+++|||+|++.++|++|++.|||+.+.+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSS----GKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccccc----ccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 79999999999999999999999999999997632 77889999999999999999999999999983
No 6
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2e-16 Score=126.42 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=72.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
.++||||+||++.++||+|.+||+++|+|+.|.+-.++.+ -.+.|||||+|.+.++|+.|++-++|+.+++ +
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~k---ktpCGFCFVeyy~~~dA~~AlryisgtrLdd-----r 106 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFK---KTPCGFCFVEYYSRDDAEDALRYISGTRLDD-----R 106 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCC---cCccceEEEEEecchhHHHHHHHhccCcccc-----c
Confidence 4799999999999999999999999999999988876654 3477999999999999999999999999998 6
Q ss_pred cEEEEeec
Q 025393 232 FLRLQFSR 239 (253)
Q Consensus 232 ~L~V~~ak 239 (253)
+|+|.|.-
T Consensus 107 ~ir~D~D~ 114 (153)
T KOG0121|consen 107 PIRIDWDA 114 (153)
T ss_pred ceeeeccc
Confidence 89999874
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=1.4e-15 Score=141.70 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=75.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++||++|+++|++||.|++|+|+.++.+ |++||||||+|+++++|++||+.||++.+++.. ++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~t---g~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~---~~ 266 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLT---GTPRGVAFVRFNKREEAQEAISALNNVIPEGGS---QP 266 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCC---CccceEEEEEECCHHHHHHHHHHhCCCccCCCc---ee
Confidence 578999999999999999999999999999999977644 889999999999999999999999999998753 57
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|.|++..
T Consensus 267 l~V~~a~~~ 275 (346)
T TIGR01659 267 LTVRLAEEH 275 (346)
T ss_pred EEEEECCcc
Confidence 999999764
No 8
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=3.4e-15 Score=124.93 Aligned_cols=77 Identities=26% Similarity=0.405 Sum_probs=70.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+||+.++++.||+.+|..||.|..|.|.... -|||||||+++.+|+.|+..|+|..|++. .
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP--------PGfAFVEFed~RDA~DAvr~LDG~~~cG~-----r 76 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP--------PGFAFVEFEDPRDAEDAVRYLDGKDICGS-----R 76 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC--------CCceEEeccCcccHHHHHhhcCCccccCc-----e
Confidence 4789999999999999999999999999999988644 26999999999999999999999999994 6
Q ss_pred EEEEeecCCC
Q 025393 233 LRLQFSRNPG 242 (253)
Q Consensus 233 L~V~~ak~~~ 242 (253)
|+|++++-..
T Consensus 77 ~rVE~S~G~~ 86 (195)
T KOG0107|consen 77 IRVELSTGRP 86 (195)
T ss_pred EEEEeecCCc
Confidence 9999998753
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=4.6e-15 Score=129.73 Aligned_cols=82 Identities=30% Similarity=0.486 Sum_probs=76.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|-|.||+.+++|++|++||.+||.|..|.|..++.+ |.+||||||.|.++++|.+||+.|||+-++. -
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~T---G~~kGFAFVtF~sRddA~rAI~~LnG~gyd~-----L 259 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKET---GLSKGFAFVTFESRDDAARAIADLNGYGYDN-----L 259 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEcccc---CcccceEEEEEecHHHHHHHHHHccCcccce-----E
Confidence 4789999999999999999999999999999999988876 9999999999999999999999999999987 3
Q ss_pred cEEEEeecCC
Q 025393 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|+|++..
T Consensus 260 ILrvEwskP~ 269 (270)
T KOG0122|consen 260 ILRVEWSKPS 269 (270)
T ss_pred EEEEEecCCC
Confidence 6999999863
No 10
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.1e-14 Score=126.87 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=68.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+.+||++|+++|+.||.|.+|+|+.++. ++|||||+|+++++|+.|| .|||..|.+ +.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~------~~GfAFVtF~d~eaAe~Al-lLnG~~l~g-----r~ 71 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE------RSQIAYVTFKDPQGAETAL-LLSGATIVD-----QS 71 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC------CCCEEEEEeCcHHHHHHHH-HhcCCeeCC-----ce
Confidence 47999999999999999999999999999999986642 3479999999999999999 599999998 57
Q ss_pred EEEEeecC
Q 025393 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|+++..
T Consensus 72 V~Vt~a~~ 79 (260)
T PLN03120 72 VTITPAED 79 (260)
T ss_pred EEEEeccC
Confidence 99999974
No 11
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=6.6e-14 Score=100.02 Aligned_cols=66 Identities=29% Similarity=0.540 Sum_probs=60.0
Q ss_pred EEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025393 156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 156 LfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
|||+|||+++++++|.++|+.||.|..+++...+. ++++++|||+|.+.++|.+|++.+++..|.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~----~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD----GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec----cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 79999999999999999999999999999997653 6788999999999999999999999999988
No 12
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=6.2e-14 Score=125.66 Aligned_cols=84 Identities=21% Similarity=0.368 Sum_probs=77.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025393 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 229 (253)
Q Consensus 150 ~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 229 (253)
.++-+||||+-|+.+++|.+|+..|+.||.|+.|+|+.++.+ |++||||||+|+++.+...|.+..+|.+|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vT---gkskGYAFIeye~erdm~~AYK~adG~~Idg---- 170 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVT---GKSKGYAFIEYEHERDMKAAYKDADGIKIDG---- 170 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeeccc---CCccceEEEEeccHHHHHHHHHhccCceecC----
Confidence 356799999999999999999999999999999999988766 9999999999999999999999999999999
Q ss_pred CccEEEEeecCC
Q 025393 230 SKFLRLQFSRNP 241 (253)
Q Consensus 230 ~r~L~V~~ak~~ 241 (253)
+.|-|.+-+-.
T Consensus 171 -rri~VDvERgR 181 (335)
T KOG0113|consen 171 -RRILVDVERGR 181 (335)
T ss_pred -cEEEEEecccc
Confidence 56888887765
No 13
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=5.5e-14 Score=108.75 Aligned_cols=84 Identities=25% Similarity=0.475 Sum_probs=74.4
Q ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC
Q 025393 145 TLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 224 (253)
Q Consensus 145 ~~~~p~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~ 224 (253)
...+|+..++.|||.|||+++|.+++.+||.+||.|+.|+|-..+.+ +|-|||.|++..+|.+|++.|+|+.++
T Consensus 10 ~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T------rGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET------RGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred CCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc------CceEEEEehHhhhHHHHHHHhcccccC
Confidence 45667777899999999999999999999999999999999876543 479999999999999999999999999
Q ss_pred CCCCCCccEEEEeec
Q 025393 225 EDDPDSKFLRLQFSR 239 (253)
Q Consensus 225 g~~~~~r~L~V~~ak 239 (253)
+ +.|.|-|-.
T Consensus 84 ~-----ryl~vlyyq 93 (124)
T KOG0114|consen 84 N-----RYLVVLYYQ 93 (124)
T ss_pred C-----ceEEEEecC
Confidence 8 678887654
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.51 E-value=6.3e-14 Score=138.30 Aligned_cols=81 Identities=15% Similarity=0.337 Sum_probs=75.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+||++++++++|+++|+.||.|++++|..+..+ +++||||||+|++.++|.+|++.||+..|.+ +.
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~t---gksKGfGFVeFe~~e~A~kAI~amNg~elgG-----r~ 275 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG---RGHKGYGFIEYNNLQSQSEAIASMNLFDLGG-----QY 275 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC---CCcCCeEEEEECCHHHHHHHHHHhCCCeeCC-----eE
Confidence 579999999999999999999999999999999977654 7889999999999999999999999999998 57
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|.++..+
T Consensus 276 LrV~kAi~p 284 (612)
T TIGR01645 276 LRVGKCVTP 284 (612)
T ss_pred EEEEecCCC
Confidence 999999875
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.51 E-value=9.6e-14 Score=134.07 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=74.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||+.+++++|+++|++||.|..+.|+.+..+ |+++|||||+|.+.++|+.||+.|||..|.+ +
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~-----~ 365 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIAT---GLSKGYAFCEYKDPSVTDVAIAALNGKDTGD-----N 365 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---CCcCeEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 4579999999999999999999999999999999876544 8899999999999999999999999999998 4
Q ss_pred cEEEEeecC
Q 025393 232 FLRLQFSRN 240 (253)
Q Consensus 232 ~L~V~~ak~ 240 (253)
.|+|.++..
T Consensus 366 ~l~v~~a~~ 374 (509)
T TIGR01642 366 KLHVQRACV 374 (509)
T ss_pred EEEEEECcc
Confidence 699999865
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.51 E-value=7.6e-14 Score=133.19 Aligned_cols=80 Identities=24% Similarity=0.468 Sum_probs=74.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+.+|||+|||.++|+++|+++|++||.|..|+|+.+..+ |+++|||||+|.+.++|.+|++.|||..|.+ +.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~---g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g-----~~ 257 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPET---GRSKGFGFIQFHDAEEAKEALEVMNGFELAG-----RP 257 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHhcCCcEECC-----EE
Confidence 589999999999999999999999999999999977643 7889999999999999999999999999988 57
Q ss_pred EEEEeecC
Q 025393 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|.|++.
T Consensus 258 i~v~~a~~ 265 (457)
T TIGR01622 258 IKVGYAQD 265 (457)
T ss_pred EEEEEccC
Confidence 99999764
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.50 E-value=5.8e-14 Score=138.52 Aligned_cols=80 Identities=20% Similarity=0.383 Sum_probs=73.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |++||||||+|++.++|++|++.|||..|.+ +.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~T---gkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G-----R~ 178 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT---GKHKGFAFVEYEVPEAAQLALEQMNGQMLGG-----RN 178 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCC---CCcCCeEEEEeCcHHHHHHHHHhcCCeEEec-----ce
Confidence 579999999999999999999999999999999977654 8899999999999999999999999999998 57
Q ss_pred EEEEeecC
Q 025393 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|.+...
T Consensus 179 IkV~rp~~ 186 (612)
T TIGR01645 179 IKVGRPSN 186 (612)
T ss_pred eeeccccc
Confidence 99986543
No 18
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=3.6e-14 Score=120.02 Aligned_cols=78 Identities=33% Similarity=0.603 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+++|||+|||.+|.|.||++||.+||.|++|.|.... | +-.||||+|+++.+|+.||..-+|+.+++. .
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-----g-~ppfafVeFEd~RDAeDAiygRdGYdydg~-----r 74 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-----G-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGC-----R 74 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-----C-CCCeeEEEecCccchhhhhhcccccccCcc-----e
Confidence 5789999999999999999999999999999886543 1 236999999999999999999999999995 5
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|+|++.-
T Consensus 75 LRVEfprgg 83 (241)
T KOG0105|consen 75 LRVEFPRGG 83 (241)
T ss_pred EEEEeccCC
Confidence 999999763
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.50 E-value=8.3e-14 Score=136.66 Aligned_cols=78 Identities=31% Similarity=0.468 Sum_probs=72.6
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025393 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 234 (253)
Q Consensus 155 tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~ 234 (253)
+|||+|||.++||++|+++|++||.|.+|+|..+..+ ++++|||||+|.+.++|++|++.||+..|.+ +.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t---~~s~G~afV~F~~~~~A~~Al~~ln~~~i~g-----k~i~ 73 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVT---RRSLGYGYVNFQNPADAERALETMNFKRLGG-----KPIR 73 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECC-----eeEE
Confidence 7999999999999999999999999999999987654 7889999999999999999999999999998 5799
Q ss_pred EEeecC
Q 025393 235 LQFSRN 240 (253)
Q Consensus 235 V~~ak~ 240 (253)
|.|++.
T Consensus 74 i~~s~~ 79 (562)
T TIGR01628 74 IMWSQR 79 (562)
T ss_pred eecccc
Confidence 999864
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.50 E-value=9.6e-14 Score=136.52 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=69.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||++++|++|+++|++||.|.+++|+.+.+ |++||||||+|.+.++|++||+.||+++|... +
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~s----G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G----r 128 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFS----GQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG----R 128 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCC----CCccceEEEEeCCHHHHHHHHHHcCCCeecCC----c
Confidence 358999999999999999999999999999999997743 88999999999999999999999999999643 3
Q ss_pred cEEEEee
Q 025393 232 FLRLQFS 238 (253)
Q Consensus 232 ~L~V~~a 238 (253)
.|.|.++
T Consensus 129 ~l~V~~S 135 (578)
T TIGR01648 129 LLGVCIS 135 (578)
T ss_pred ccccccc
Confidence 4666554
No 21
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=9.2e-14 Score=125.95 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=72.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.+.|+|+|||+...|.||+.+|++||.|.+|.|+.++. -+|||+||+|++.++|++|-++|||..|.| |.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER-----GSKGFGFVTmen~~dadRARa~LHgt~VEG-----Rk 165 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER-----GSKGFGFVTMENPADADRARAELHGTVVEG-----RK 165 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC-----CCCccceEEecChhhHHHHHHHhhcceeec-----eE
Confidence 47899999999999999999999999999999998874 278999999999999999999999999999 77
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|.|..|...
T Consensus 166 IEVn~ATar 174 (376)
T KOG0125|consen 166 IEVNNATAR 174 (376)
T ss_pred EEEeccchh
Confidence 999888653
No 22
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=2.7e-13 Score=94.31 Aligned_cols=71 Identities=31% Similarity=0.537 Sum_probs=63.6
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025393 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 234 (253)
Q Consensus 155 tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~ 234 (253)
+|||.|||.++++++|+++|++||.|.++++.... +.++++|||+|.+.++|++|++.|++..+.+ +.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~-----~~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-----GKSKGFAFVEFESEEDAEKAIEALNGTKLGG-----RPLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CCCCceEEEEeCCHHHHHHHHHHhCCcEECC-----EEEe
Confidence 58999999999999999999999999999988654 4567899999999999999999999999987 3566
Q ss_pred E
Q 025393 235 L 235 (253)
Q Consensus 235 V 235 (253)
|
T Consensus 71 v 71 (72)
T smart00362 71 V 71 (72)
T ss_pred e
Confidence 5
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.48 E-value=1.8e-13 Score=134.38 Aligned_cols=81 Identities=22% Similarity=0.356 Sum_probs=74.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+||++++|+++|+++|++||.|++|+++.+.. |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~----g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g-----k 354 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK----GVSRGFGFVCFSNPEEANRAVTEMHGRMLGG-----K 354 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC----CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC-----c
Confidence 357899999999999999999999999999999998743 8889999999999999999999999999988 5
Q ss_pred cEEEEeecCC
Q 025393 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
+|+|.||+..
T Consensus 355 ~l~V~~a~~k 364 (562)
T TIGR01628 355 PLYVALAQRK 364 (562)
T ss_pred eeEEEeccCc
Confidence 7999999863
No 24
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=7.5e-14 Score=121.64 Aligned_cols=68 Identities=21% Similarity=0.325 Sum_probs=61.6
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
++|||++|+|++..++|++.|++||+|++..|++++.+ |++|||+||+|.+.+.|++|++.-| -.|++
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t---~rskGyGfVTf~d~~aa~rAc~dp~-piIdG 80 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNT---GRSKGYGFVTFRDAEAATRACKDPN-PIIDG 80 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCC---ccccceeeEEeecHHHHHHHhcCCC-Ccccc
Confidence 67999999999999999999999999999999999876 9999999999999999999996543 34555
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.46 E-value=2.8e-13 Score=129.24 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||.++++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++||. |+|..|.+ +
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~---~~skg~afVeF~~~e~A~~Al~-l~g~~~~g-----~ 158 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNS---RRSKGVAYVEFYDVESVIKALA-LTGQMLLG-----R 158 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC---CCcceEEEEEECCHHHHHHHHH-hCCCEECC-----e
Confidence 4689999999999999999999999999999999977654 8899999999999999999995 99999998 5
Q ss_pred cEEEEeecCC
Q 025393 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
+|.|++++..
T Consensus 159 ~i~v~~~~~~ 168 (457)
T TIGR01622 159 PIIVQSSQAE 168 (457)
T ss_pred eeEEeecchh
Confidence 7999887654
No 26
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.45 E-value=1.6e-13 Score=117.76 Aligned_cols=81 Identities=22% Similarity=0.335 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
-.+|-|-||.+.++.++|+.+|++||.|-+|.|..+.-+ .+++|||||-|.+..+|+.|+++|+|..|++ +.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~T---r~sRgFaFVrf~~k~daedA~damDG~~ldg-----Re 84 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYT---RQSRGFAFVRFHDKRDAEDALDAMDGAVLDG-----RE 84 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceeccccccc---ccccceeEEEeeecchHHHHHHhhcceeecc-----ce
Confidence 478999999999999999999999999999999877655 7899999999999999999999999999999 57
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|++|+.-
T Consensus 85 lrVq~aryg 93 (256)
T KOG4207|consen 85 LRVQMARYG 93 (256)
T ss_pred eeehhhhcC
Confidence 999999863
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.45 E-value=5.3e-13 Score=131.30 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=67.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCC--CcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~f--G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.++|||+||++++++++|+++|++| |.|++|+++. +||||+|++.++|++|++.||+..|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-----------gfAFVeF~s~e~A~kAi~~lnG~~i~G----- 296 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-----------DYAFVHFEDREDAVKAMDELNGKELEG----- 296 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-----------CeEEEEeCCHHHHHHHHHHhCCCEECC-----
Confidence 5789999999999999999999999 9999987752 499999999999999999999999999
Q ss_pred ccEEEEeecCC
Q 025393 231 KFLRLQFSRNP 241 (253)
Q Consensus 231 r~L~V~~ak~~ 241 (253)
+.|+|+|++.+
T Consensus 297 r~I~V~~Akp~ 307 (578)
T TIGR01648 297 SEIEVTLAKPV 307 (578)
T ss_pred EEEEEEEccCC
Confidence 57999999876
No 28
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=4.6e-13 Score=114.62 Aligned_cols=79 Identities=33% Similarity=0.548 Sum_probs=73.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|.++|.+||.|..+++..++.+ ++++|||||+|.+.++|..|++.|++..|.+ +.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~---~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~-----~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRET---GKSRGFAFVEFESEESAEKAIEELNGKELEG-----RP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecccc---CccCceEEEEecCHHHHHHHHHHcCCCeECC-----ce
Confidence 589999999999999999999999999999999877633 8899999999999999999999999999999 67
Q ss_pred EEEEeec
Q 025393 233 LRLQFSR 239 (253)
Q Consensus 233 L~V~~ak 239 (253)
|+|.++.
T Consensus 187 ~~v~~~~ 193 (306)
T COG0724 187 LRVQKAQ 193 (306)
T ss_pred eEeeccc
Confidence 9999975
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.43 E-value=7e-13 Score=128.36 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025393 152 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 152 ~~~tLfV~nLp~-~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
++++|||+||++ .+|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++|++.|||..|.+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--------~g~afV~f~~~~~A~~Ai~~lng~~l~g----- 340 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--------KETALIEMADPYQAQLALTHLNGVKLFG----- 340 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 468999999998 69999999999999999999998653 3699999999999999999999999998
Q ss_pred ccEEEEeecCC
Q 025393 231 KFLRLQFSRNP 241 (253)
Q Consensus 231 r~L~V~~ak~~ 241 (253)
++|+|++++..
T Consensus 341 ~~l~v~~s~~~ 351 (481)
T TIGR01649 341 KPLRVCPSKQQ 351 (481)
T ss_pred ceEEEEEcccc
Confidence 57999999764
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.3e-13 Score=118.44 Aligned_cols=75 Identities=23% Similarity=0.427 Sum_probs=70.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+++|||+|++.-+||++|++.|++||.|.+||+.+.+ ||+||.|++.|+|..||..+|+++|.++ .
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q---------GYaFVrF~tkEaAahAIv~mNntei~G~-----~ 229 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ---------GYAFVRFETKEAAAHAIVQMNNTEIGGQ-----L 229 (321)
T ss_pred CceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc---------ceEEEEecchhhHHHHHHHhcCceeCce-----E
Confidence 6999999999999999999999999999999999775 6999999999999999999999999995 6
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
+|..|.|..
T Consensus 230 VkCsWGKe~ 238 (321)
T KOG0148|consen 230 VRCSWGKEG 238 (321)
T ss_pred EEEeccccC
Confidence 999999974
No 31
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=4.8e-13 Score=126.76 Aligned_cols=76 Identities=24% Similarity=0.374 Sum_probs=69.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCH--HHHHHHHHHHcCceeCCCCCCC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP--ACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~--~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
..+||||||++.+++++|..+|+.||.|..|.|+.. + | ||||||+|.+. .++.+||..|||.++.|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--T---G--RGFAFVEMssdddaEeeKAISaLNGAEWKG----- 77 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--K---G--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----- 77 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--c---C--CceEEEEecCCcHHHHHHHHHHhcCCeecC-----
Confidence 468999999999999999999999999999999922 2 5 79999999987 78999999999999999
Q ss_pred ccEEEEeecC
Q 025393 231 KFLRLQFSRN 240 (253)
Q Consensus 231 r~L~V~~ak~ 240 (253)
+.|+|+-||.
T Consensus 78 R~LKVNKAKP 87 (759)
T PLN03213 78 GRLRLEKAKE 87 (759)
T ss_pred ceeEEeeccH
Confidence 6799999875
No 32
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.41 E-value=9.2e-13 Score=116.02 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=66.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
..||||+||++.+||++|+++|+.||.|.+|+|+.+. +.++||||+|.++++|+.|+ .|+|..|.++ +
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~------et~gfAfVtF~d~~aaetAl-lLnGa~l~d~-----~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG------EYACTAYVTFKDAYALETAV-LLSGATIVDQ-----R 72 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC------CcceEEEEEECCHHHHHHHH-hcCCCeeCCc-----e
Confidence 4799999999999999999999999999999999663 34579999999999999999 8999999984 5
Q ss_pred EEEEeec
Q 025393 233 LRLQFSR 239 (253)
Q Consensus 233 L~V~~ak 239 (253)
|.|.-..
T Consensus 73 I~It~~~ 79 (243)
T PLN03121 73 VCITRWG 79 (243)
T ss_pred EEEEeCc
Confidence 7776543
No 33
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.1e-12 Score=90.73 Aligned_cols=70 Identities=36% Similarity=0.549 Sum_probs=62.3
Q ss_pred EeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEE
Q 025393 158 VEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 235 (253)
Q Consensus 158 V~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V 235 (253)
|+|||..+++++|+++|++||.|.++.+...... ++++++|||+|.+.++|..|++.|++..+.+ +.|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~---~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~-----~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDT---GKSKGFAFVEFESEEDAEKALEALNGKELDG-----RPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCC---CCCCceEEEEeCCHHHHHHHHHHcCCCeeCC-----cEEEe
Confidence 5799999999999999999999999999866532 6788999999999999999999999999987 35665
No 34
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.41 E-value=9e-13 Score=127.59 Aligned_cols=85 Identities=20% Similarity=0.331 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCc--EEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC-C
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVG--YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD-P 228 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~--i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~-~ 228 (253)
++.+|||+|||+++++++|+++|++||. |+.+++...+. ..+++|||+|++.++|.+||..||++.|.+.. .
T Consensus 393 ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~-----~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~ 467 (481)
T TIGR01649 393 PSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDN-----ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGS 467 (481)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCC-----CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCC
Confidence 4689999999999999999999999998 88888875542 24679999999999999999999999998842 0
Q ss_pred CCccEEEEeecCC
Q 025393 229 DSKFLRLQFSRNP 241 (253)
Q Consensus 229 ~~r~L~V~~ak~~ 241 (253)
....|+|+||+++
T Consensus 468 ~~~~lkv~fs~~~ 480 (481)
T TIGR01649 468 APYHLKVSFSTSR 480 (481)
T ss_pred ccceEEEEeccCC
Confidence 1125999999864
No 35
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.9e-13 Score=118.37 Aligned_cols=88 Identities=22% Similarity=0.366 Sum_probs=79.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025393 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
+..+||||++|..+++|.-|...|-+||.|+.|.+..+... .+.+||+||+|+..|+|.+||..||+.++.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyes---qkHRgFgFVefe~aEDAaaAiDNMnesEL~G----- 79 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYES---QKHRGFGFVEFEEAEDAAAAIDNMNESELFG----- 79 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhc---ccccceeEEEeeccchhHHHhhcCchhhhcc-----
Confidence 34689999999999999999999999999999999966543 6778899999999999999999999999999
Q ss_pred ccEEEEeecCCCCCCC
Q 025393 231 KFLRLQFSRNPGPRSV 246 (253)
Q Consensus 231 r~L~V~~ak~~~~r~g 246 (253)
|.|+|.||+.+..+.+
T Consensus 80 rtirVN~AkP~kikeg 95 (298)
T KOG0111|consen 80 RTIRVNLAKPEKIKEG 95 (298)
T ss_pred eeEEEeecCCccccCC
Confidence 7899999999876654
No 36
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.40 E-value=3.1e-12 Score=89.33 Aligned_cols=74 Identities=34% Similarity=0.558 Sum_probs=65.6
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025393 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 234 (253)
Q Consensus 155 tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~ 234 (253)
+|+|+|||..+++++|+++|+.||.|..+.+..... .+++++|||+|.+.++|..|++.+++..+.+ +.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~----~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~-----~~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD----TKSKGFAFVEFEDEEDAEKALEALNGKELGG-----RPLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCeECC-----eEEE
Confidence 489999999999999999999999999999986653 3556899999999999999999999999887 4677
Q ss_pred EEe
Q 025393 235 LQF 237 (253)
Q Consensus 235 V~~ 237 (253)
|+|
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 764
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=9.9e-13 Score=122.84 Aligned_cols=85 Identities=18% Similarity=0.366 Sum_probs=75.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.-+|||+-||...+|+||+++|++||.|.+|.|++++.+ +.++|||||.|.++++|.+|+.+||..+...... .+
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t---~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~--~p 108 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKST---GQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH--HP 108 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeeccccc---CcccceEEEEeccHHHHHHHHHHhhcccccCCCC--cc
Confidence 567999999999999999999999999999999998876 8999999999999999999999999877644321 47
Q ss_pred EEEEeecCCC
Q 025393 233 LRLQFSRNPG 242 (253)
Q Consensus 233 L~V~~ak~~~ 242 (253)
|+|.||....
T Consensus 109 vqvk~Ad~E~ 118 (510)
T KOG0144|consen 109 VQVKYADGER 118 (510)
T ss_pred eeecccchhh
Confidence 9999997653
No 38
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=3.8e-13 Score=125.58 Aligned_cols=87 Identities=24% Similarity=0.324 Sum_probs=77.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+-|+..+||.||++||++||.|++|.|+.+.. +.+||||||.|.+++.|..||++|||..-.+.+. -+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~----~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs--~P 197 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD----GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCS--QP 197 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheeccc----ccccceeEEEEehHHHHHHHHHhhccceeeccCC--Cc
Confidence 47899999999999999999999999999999998765 7899999999999999999999999977655442 58
Q ss_pred EEEEeecCCCCCC
Q 025393 233 LRLQFSRNPGPRS 245 (253)
Q Consensus 233 L~V~~ak~~~~r~ 245 (253)
|.|.||.....|.
T Consensus 198 LVVkFADtqkdk~ 210 (510)
T KOG0144|consen 198 LVVKFADTQKDKD 210 (510)
T ss_pred eEEEecccCCCch
Confidence 9999998865553
No 39
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=3.1e-12 Score=119.94 Aligned_cols=81 Identities=25% Similarity=0.371 Sum_probs=73.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.+-|||+.||.++.|++|..||++.|.|-++||+.+... |++||||||.|.+.++|++|++.||+++|.-. +.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~s---G~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G----K~ 155 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFS---GDNRGYAFVTFCTKEEAQEAIKELNNYEIRPG----KL 155 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccC---CCCcceEEEEeecHHHHHHHHHHhhCccccCC----CE
Confidence 688999999999999999999999999999999988544 99999999999999999999999999999764 56
Q ss_pred EEEEeecC
Q 025393 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|.|..+..
T Consensus 156 igvc~Sva 163 (506)
T KOG0117|consen 156 LGVCVSVA 163 (506)
T ss_pred eEEEEeee
Confidence 87776644
No 40
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.36 E-value=1.3e-12 Score=124.47 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=77.6
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 233 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 233 (253)
+.|||+|||++++|++|.++|+..|.|.+++++.+..+ |++|||+|++|.+.++|+.|++.|||+++.+ |+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~t---G~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g-----r~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRET---GKPKGFGFCEFTDEETAERAIRNLNGAEFNG-----RKL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccC---CCcCceeeEecCchhhHHHHHHhcCCcccCC-----ceE
Confidence 78999999999999999999999999999999988876 9999999999999999999999999999998 789
Q ss_pred EEEeecCCCC
Q 025393 234 RLQFSRNPGP 243 (253)
Q Consensus 234 ~V~~ak~~~~ 243 (253)
+|.|+.....
T Consensus 91 ~v~~~~~~~~ 100 (435)
T KOG0108|consen 91 RVNYASNRKN 100 (435)
T ss_pred Eeecccccch
Confidence 9999987643
No 41
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.2e-13 Score=116.43 Aligned_cols=80 Identities=20% Similarity=0.435 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+.-|||+|||+++||.+|.-+|++||+|+.|.|+.++.+ |+++||||+.|++..+...|+..|||.+|.+ |.
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~T---GKSKGFaFLcYEDQRSTILAVDN~NGiki~g-----Rt 106 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKT---GKSKGFAFLCYEDQRSTILAVDNLNGIKILG-----RT 106 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCC---CcccceEEEEecCccceEEEEeccCCceecc-----ee
Confidence 577999999999999999999999999999999988876 9999999999999999999999999999999 78
Q ss_pred EEEEeecC
Q 025393 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|.-.-+
T Consensus 107 irVDHv~~ 114 (219)
T KOG0126|consen 107 IRVDHVSN 114 (219)
T ss_pred EEeeeccc
Confidence 99976543
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.5e-12 Score=114.17 Aligned_cols=81 Identities=17% Similarity=0.349 Sum_probs=75.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.-.+||+.|...|+.++|++.|.+||+|.+++|+.+..+ +|+|||+||.|-+.++||.||..|||.-|.. |.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T---~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~-----R~ 133 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNT---GKSKGYGFVSFPNKEDAENAIQQMNGQWLGR-----RT 133 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccC---CcccceeEEeccchHHHHHHHHHhCCeeecc-----ce
Confidence 456999999999999999999999999999999988876 8999999999999999999999999999987 78
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
||-.||...
T Consensus 134 IRTNWATRK 142 (321)
T KOG0148|consen 134 IRTNWATRK 142 (321)
T ss_pred eeccccccC
Confidence 999999653
No 43
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=3.7e-12 Score=102.98 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=75.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
..+|||.++...+||++|.+.|..||+|+.+.|..++.+ |-.||||+|+|++.++|.+|+.+|||..|.++ .
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRt---Gy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q-----~ 143 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRT---GYVKGYALVEYETLKEAQAAIDALNGAELLGQ-----N 143 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeecccccc---ccccceeeeehHhHHHHHHHHHhccchhhhCC-----c
Confidence 578999999999999999999999999999999877755 99999999999999999999999999999996 4
Q ss_pred EEEEeecCCCC
Q 025393 233 LRLQFSRNPGP 243 (253)
Q Consensus 233 L~V~~ak~~~~ 243 (253)
|.|.|+=..++
T Consensus 144 v~VDw~Fv~gp 154 (170)
T KOG0130|consen 144 VSVDWCFVKGP 154 (170)
T ss_pred eeEEEEEecCC
Confidence 89999855443
No 44
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.32 E-value=2.1e-12 Score=108.84 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
.-.||||+||+..++++.|+++|-+.|.|+++++..++-+ .+.+|||||||.++++|+-|++.||..++.+ |
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~---~~~qGygF~Ef~~eedadYAikiln~VkLYg-----r 79 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVT---QKHQGYGFAEFRTEEDADYAIKILNMVKLYG-----R 79 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhc---ccccceeEEEEechhhhHHHHHHHHHHHhcC-----c
Confidence 3589999999999999999999999999999999977654 4577899999999999999999999999999 6
Q ss_pred cEEEEeec
Q 025393 232 FLRLQFSR 239 (253)
Q Consensus 232 ~L~V~~ak 239 (253)
+|+|.-+.
T Consensus 80 pIrv~kas 87 (203)
T KOG0131|consen 80 PIRVNKAS 87 (203)
T ss_pred eeEEEecc
Confidence 89998876
No 45
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=5.4e-12 Score=111.73 Aligned_cols=81 Identities=26% Similarity=0.474 Sum_probs=75.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.+.|.|.-||.++|++||+.||+..|+|.+|+++.++.+ |++.||+||.|.++++|++|+..|||-.+.. +.
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKit---GqSLGYGFVNYv~p~DAe~AintlNGLrLQ~-----KT 112 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKIT---GQSLGYGFVNYVRPKDAEKAINTLNGLRLQN-----KT 112 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeecccc---ccccccceeeecChHHHHHHHhhhcceeecc-----ce
Confidence 356899999999999999999999999999999988876 9999999999999999999999999999987 57
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|+||+..
T Consensus 113 IKVSyARPS 121 (360)
T KOG0145|consen 113 IKVSYARPS 121 (360)
T ss_pred EEEEeccCC
Confidence 999999974
No 46
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=1.1e-11 Score=109.70 Aligned_cols=80 Identities=25% Similarity=0.433 Sum_probs=74.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
...|||-||.++++|..|+++|.+||.|..|+++.+.++ .++|||+||.+.+-++|..||..|||+.+.+ |.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~tt---nkCKGfgFVtMtNYdEAamAi~sLNGy~lg~-----rv 349 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTT---NKCKGFGFVTMTNYDEAAMAIASLNGYRLGD-----RV 349 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCc---ccccceeEEEecchHHHHHHHHHhcCccccc-----eE
Confidence 467999999999999999999999999999999988765 6889999999999999999999999999988 78
Q ss_pred EEEEeecC
Q 025393 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|.|+|..+
T Consensus 350 LQVsFKtn 357 (360)
T KOG0145|consen 350 LQVSFKTN 357 (360)
T ss_pred EEEEEecC
Confidence 99999765
No 47
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.30 E-value=6.1e-12 Score=109.15 Aligned_cols=78 Identities=27% Similarity=0.419 Sum_probs=70.9
Q ss_pred CCEEEEeCCCCCCCHHHHHH----hhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025393 153 SSTLYVEGLPADSTKREVAH----IFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~----lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
+.||||.||+..+..++|++ ||++||.|..|..... .+.+|.|||.|.+.+.|..|+.+|+|..+.+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt------~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg--- 79 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT------PKMRGQAFVVFKETEAASAALRALQGFPFYG--- 79 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC------CCccCceEEEecChhHHHHHHHHhcCCcccC---
Confidence 45999999999999999887 9999999999987743 4567899999999999999999999999999
Q ss_pred CCccEEEEeecCC
Q 025393 229 DSKFLRLQFSRNP 241 (253)
Q Consensus 229 ~~r~L~V~~ak~~ 241 (253)
++|+|+||+++
T Consensus 80 --K~mriqyA~s~ 90 (221)
T KOG4206|consen 80 --KPMRIQYAKSD 90 (221)
T ss_pred --chhheecccCc
Confidence 58999999986
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=8.1e-12 Score=119.60 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=73.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
...|.|.||||.|.+.+|+.+|++||.|.+|.|+.+.. |+.+|||||.|.+..+|++||+.||+.+|++ |+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d----gklcGFaFV~fk~~~dA~~Al~~~N~~~i~g-----R~ 187 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD----GKLCGFAFVQFKEKKDAEKALEFFNGNKIDG-----RP 187 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC----CCccceEEEEEeeHHHHHHHHHhccCceecC-----ce
Confidence 56899999999999999999999999999999985543 7777999999999999999999999999999 79
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|-|.||-..
T Consensus 188 VAVDWAV~K 196 (678)
T KOG0127|consen 188 VAVDWAVDK 196 (678)
T ss_pred eEEeeeccc
Confidence 999999653
No 49
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=7.8e-12 Score=117.28 Aligned_cols=73 Identities=21% Similarity=0.351 Sum_probs=67.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.+.|||.||+.++|||.|+++|++||.|..|+.+.+ ||||.|.++++|-+|++.|||+.|+++ .
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----------YaFVHf~eR~davkAm~~~ngkeldG~-----~ 322 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----------YAFVHFAEREDAVKAMKETNGKELDGS-----P 322 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----------eeEEeecchHHHHHHHHHhcCceecCc-----e
Confidence 478999999999999999999999999999887633 999999999999999999999999996 6
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|.|.+||.+
T Consensus 323 iEvtLAKP~ 331 (506)
T KOG0117|consen 323 IEVTLAKPV 331 (506)
T ss_pred EEEEecCCh
Confidence 999999986
No 50
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=3.9e-11 Score=82.56 Aligned_cols=56 Identities=21% Similarity=0.438 Sum_probs=49.9
Q ss_pred HHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEee
Q 025393 170 VAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 238 (253)
Q Consensus 170 L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~a 238 (253)
|.++|++||.|.++++..++ +++|||+|.+.++|++|++.|||..+.+ ++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--------~~~a~V~f~~~~~A~~a~~~l~~~~~~g-----~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--------RGFAFVEFASVEDAQKAIEQLNGRQFNG-----RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--------TTEEEEEESSHHHHHHHHHHHTTSEETT-----EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECC-----cEEEEEEC
Confidence 68999999999999998654 2599999999999999999999999988 68999997
No 51
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.23 E-value=8.2e-12 Score=111.90 Aligned_cols=72 Identities=24% Similarity=0.463 Sum_probs=67.5
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 233 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 233 (253)
.+|||+|||.++++.+|+.||++||.|.++.|+++ |+||..++...|+.||+.|||++|.+. .|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdktaaedairNLhgYtLhg~-----nI 66 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDKTAAEDAIRNLHGYTLHGV-----NI 66 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------cceEEeecccccHHHHhhcccceecce-----EE
Confidence 47999999999999999999999999999999965 899999999999999999999999994 69
Q ss_pred EEEeecCC
Q 025393 234 RLQFSRNP 241 (253)
Q Consensus 234 ~V~~ak~~ 241 (253)
+|+-+|+.
T Consensus 67 nVeaSksK 74 (346)
T KOG0109|consen 67 NVEASKSK 74 (346)
T ss_pred EEEecccc
Confidence 99988886
No 52
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.4e-11 Score=109.71 Aligned_cols=80 Identities=23% Similarity=0.418 Sum_probs=75.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.+.|||..|.+-+|.++|.-||+.||.|+++.|+.+..+ |.+.-||||||++.+++++|.-+|++..|+. +.
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~kt---gdsLqyaFiEFen~escE~AyFKMdNvLIDD-----rR 310 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKT---GDSLQYAFIEFENKESCEQAYFKMDNVLIDD-----RR 310 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccc---cchhheeeeeecchhhHHHHHhhhcceeecc-----ce
Confidence 589999999999999999999999999999999987765 8899999999999999999999999999998 68
Q ss_pred EEEEeecC
Q 025393 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|.|+.+
T Consensus 311 IHVDFSQS 318 (479)
T KOG0415|consen 311 IHVDFSQS 318 (479)
T ss_pred EEeehhhh
Confidence 99999876
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=9.2e-11 Score=112.47 Aligned_cols=80 Identities=25% Similarity=0.425 Sum_probs=71.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHH-----cC-ceeCCC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-----QG-YRMDED 226 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L-----nG-~~i~g~ 226 (253)
..||||.|||+++||++|.++|++||.|..+.|+..+.+ +.++|+|||.|.+..+|.+||.+. .| ..|++
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T---~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G- 367 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDT---GHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG- 367 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCC---CCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec-
Confidence 479999999999999999999999999999999987766 899999999999999999999877 34 56666
Q ss_pred CCCCccEEEEeecC
Q 025393 227 DPDSKFLRLQFSRN 240 (253)
Q Consensus 227 ~~~~r~L~V~~ak~ 240 (253)
|.|+|..|-.
T Consensus 368 ----R~Lkv~~Av~ 377 (678)
T KOG0127|consen 368 ----RLLKVTLAVT 377 (678)
T ss_pred ----cEEeeeeccc
Confidence 7899988754
No 54
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.16 E-value=6.4e-11 Score=117.18 Aligned_cols=80 Identities=25% Similarity=0.483 Sum_probs=74.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
.++||||+.|+.+++|.+|..+|+.||+|.+|.++..+ +||||.+..+.+|++|+.+|+.+++.. +
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R---------~cAfI~M~~RqdA~kalqkl~n~kv~~-----k 485 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR---------GCAFIKMVRRQDAEKALQKLSNVKVAD-----K 485 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC---------ceeEEEEeehhHHHHHHHHHhcccccc-----e
Confidence 57899999999999999999999999999999998664 599999999999999999999999987 5
Q ss_pred cEEEEeecCCCCCC
Q 025393 232 FLRLQFSRNPGPRS 245 (253)
Q Consensus 232 ~L~V~~ak~~~~r~ 245 (253)
.|+|.|+...+.+.
T Consensus 486 ~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 486 TIKIAWAVGKGPKS 499 (894)
T ss_pred eeEEeeeccCCcch
Confidence 79999999988765
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.15 E-value=2.4e-10 Score=99.38 Aligned_cols=87 Identities=31% Similarity=0.522 Sum_probs=72.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCC-ccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025393 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGG-DPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 150 ~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG-~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
+...+||||.+||.++...||+.||..|-......|...... + -++.++||+|.+..+|.+|+++|||..|+-.+.
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~---~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKG---DQVCKPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCC---CccccceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 345799999999999999999999999988877666532211 1 145799999999999999999999999998764
Q ss_pred CCccEEEEeecCC
Q 025393 229 DSKFLRLQFSRNP 241 (253)
Q Consensus 229 ~~r~L~V~~ak~~ 241 (253)
..|+|++||++
T Consensus 108 --stLhiElAKSN 118 (284)
T KOG1457|consen 108 --STLHIELAKSN 118 (284)
T ss_pred --ceeEeeehhcC
Confidence 57999999986
No 56
>smart00361 RRM_1 RNA recognition motif.
Probab=99.14 E-value=2e-10 Score=82.86 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=51.5
Q ss_pred HHHHHHhhc----CCCcEEEEE-EeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEE
Q 025393 167 KREVAHIFR----PFVGYKEVR-LVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 235 (253)
Q Consensus 167 e~~L~~lF~----~fG~i~~vr-l~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V 235 (253)
+++|+++|+ +||.|.+|. ++.++.+ ..++++||+||+|.+.++|.+|++.|||..+.+ +.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~-~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g-----r~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVG-YENHKRGNVYITFERSEDAARAIVDLNGRYFDG-----RTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCC-CCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC-----EEEEe
Confidence 678899998 999999995 4433321 126788999999999999999999999999998 56765
No 57
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=8.7e-11 Score=104.48 Aligned_cols=82 Identities=26% Similarity=0.518 Sum_probs=75.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.+.|||-.||.+..+.||..+|-.||.|++.++..++.+ .++|+|+||.|+++.+|..||.+|||..|.- +
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRAT---NQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM-----K 355 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRAT---NQSKCFGFVSFDNPASAQAAIQAMNGFQIGM-----K 355 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcc---ccccceeeEecCCchhHHHHHHHhcchhhhh-----h
Confidence 3688999999999999999999999999999999988876 6789999999999999999999999999987 4
Q ss_pred cEEEEeecCC
Q 025393 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|+..|..
T Consensus 356 RLKVQLKRPk 365 (371)
T KOG0146|consen 356 RLKVQLKRPK 365 (371)
T ss_pred hhhhhhcCcc
Confidence 6999998775
No 58
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.08 E-value=1.4e-10 Score=111.30 Aligned_cols=78 Identities=26% Similarity=0.436 Sum_probs=70.8
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025393 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 234 (253)
Q Consensus 155 tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~ 234 (253)
.|||+||.++++|++|+.+|++||.|..|.+..+..+ |++|||+||+|.+.++|.+|++.|||.+|-| +.|+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~t---G~skgfGfi~f~~~~~ar~a~e~lngfelAG-----r~ik 351 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSET---GRSKGFGFITFVNKEDARKALEQLNGFELAG-----RLIK 351 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeecccccc---ccccCcceEEEecHHHHHHHHHHhccceecC-----ceEE
Confidence 3999999999999999999999999999998877544 9999999999999999999999999999888 6788
Q ss_pred EEeecC
Q 025393 235 LQFSRN 240 (253)
Q Consensus 235 V~~ak~ 240 (253)
|.....
T Consensus 352 V~~v~~ 357 (549)
T KOG0147|consen 352 VSVVTE 357 (549)
T ss_pred EEEeee
Confidence 876544
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.08 E-value=3.1e-10 Score=106.52 Aligned_cols=78 Identities=21% Similarity=0.381 Sum_probs=70.7
Q ss_pred CEEEEeCCCCCCCHHHHHHhhc-CCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 154 STLYVEGLPADSTKREVAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~-~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+.+||.|||+++.+.+|++||. +.|+|..|.|+.+.. ||+||||.|||+++|.+++|++.||.+.+.+ |+
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~----GK~rGcavVEFk~~E~~qKa~E~lnk~~~~G-----R~ 115 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES----GKARGCAVVEFKDPENVQKALEKLNKYEVNG-----RE 115 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC----CCcCCceEEEeeCHHHHHHHHHHhhhccccC-----ce
Confidence 5699999999999999999997 569999999998876 9999999999999999999999999999998 68
Q ss_pred EEEEeecC
Q 025393 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|.-...
T Consensus 116 l~vKEd~d 123 (608)
T KOG4212|consen 116 LVVKEDHD 123 (608)
T ss_pred EEEeccCc
Confidence 88865543
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.03 E-value=8.6e-10 Score=106.61 Aligned_cols=84 Identities=10% Similarity=0.201 Sum_probs=67.3
Q ss_pred CCCEEEEeCCCCC--C--------CHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc
Q 025393 152 ASSTLYVEGLPAD--S--------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 221 (253)
Q Consensus 152 ~~~tLfV~nLp~~--v--------te~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~ 221 (253)
++++|+|.||... + ..++|+++|++||.|++|+|+.....+..+..+|++||+|++.++|++|+.+|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 4688999999642 1 13578999999999999999854322222456789999999999999999999999
Q ss_pred eeCCCCCCCccEEEEeecC
Q 025393 222 RMDEDDPDSKFLRLQFSRN 240 (253)
Q Consensus 222 ~i~g~~~~~r~L~V~~ak~ 240 (253)
+|.+ +.|.|.|...
T Consensus 488 ~~~g-----r~v~~~~~~~ 501 (509)
T TIGR01642 488 KFND-----RVVVAAFYGE 501 (509)
T ss_pred EECC-----eEEEEEEeCH
Confidence 9998 6899998753
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=5e-10 Score=99.66 Aligned_cols=85 Identities=24% Similarity=0.371 Sum_probs=74.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+=|...-.|||++.+|..||.|.+|.+..... |.+|||+||.|.+..+|..||+.|||......-. ..
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d----g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGAS--SS 92 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD----GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGAS--SS 92 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC----CCCCCceEEEeccchHHHHHHHHhcccccCCCCc--cc
Confidence 47899999999999999999999999999999986654 8899999999999999999999999987654322 46
Q ss_pred EEEEeecCCCC
Q 025393 233 LRLQFSRNPGP 243 (253)
Q Consensus 233 L~V~~ak~~~~ 243 (253)
|.|.|+...+.
T Consensus 93 LVVK~ADTdkE 103 (371)
T KOG0146|consen 93 LVVKFADTDKE 103 (371)
T ss_pred eEEEeccchHH
Confidence 99999987543
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.01 E-value=4.8e-10 Score=94.72 Aligned_cols=84 Identities=12% Similarity=0.313 Sum_probs=72.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEE-EEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~v-rl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+..|||+||.++++|..|.++|+.||.+... +++....+ |+++||+||.|++.+.+.+|+..|||..+.. +
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~t---g~~~~~g~i~~~sfeasd~ai~s~ngq~l~n-----r 167 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDT---GNPKGFGFINYASFEASDAAIGSMNGQYLCN-----R 167 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccC---CCCCCCeEEechhHHHHHHHHHHhccchhcC-----C
Confidence 3679999999999999999999999988653 45545443 7889999999999999999999999999887 6
Q ss_pred cEEEEeecCCCCC
Q 025393 232 FLRLQFSRNPGPR 244 (253)
Q Consensus 232 ~L~V~~ak~~~~r 244 (253)
+|+|+|+.....+
T Consensus 168 ~itv~ya~k~~~k 180 (203)
T KOG0131|consen 168 PITVSYAFKKDTK 180 (203)
T ss_pred ceEEEEEEecCCC
Confidence 8999999886443
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=3.1e-10 Score=104.63 Aligned_cols=75 Identities=20% Similarity=0.411 Sum_probs=70.0
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 233 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 233 (253)
+.|||+.+.+++.|+.|+..|.+||.|+++.+..+..+ ++.||||||||+-+|.|..|++.|||..+.+ |.|
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T---~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG-----RNi 185 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT---GKHKGFAFVEYEVPEAAQLALEQMNGQMLGG-----RNI 185 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeeccccccc---ccccceEEEEEeCcHHHHHHHHHhccccccC-----ccc
Confidence 67999999999999999999999999999999877765 8899999999999999999999999999998 568
Q ss_pred EEE
Q 025393 234 RLQ 236 (253)
Q Consensus 234 ~V~ 236 (253)
+|.
T Consensus 186 KVg 188 (544)
T KOG0124|consen 186 KVG 188 (544)
T ss_pred ccc
Confidence 875
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.00 E-value=1.9e-09 Score=101.35 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=66.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||.|||+++|++.|++-|..||.|..+.|+.. |++|| .|.|.++++|+.|+..|+|.++++ |.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~------GkskG--VVrF~s~edAEra~a~Mngs~l~G-----r~ 602 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN------GKSKG--VVRFFSPEDAERACALMNGSRLDG-----RN 602 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhcc------CCccc--eEEecCHHHHHHHHHHhccCcccC-----ce
Confidence 578999999999999999999999999999988543 77777 899999999999999999999999 56
Q ss_pred EEEEee
Q 025393 233 LRLQFS 238 (253)
Q Consensus 233 L~V~~a 238 (253)
|+|.|.
T Consensus 603 I~V~y~ 608 (608)
T KOG4212|consen 603 IKVTYF 608 (608)
T ss_pred eeeeeC
Confidence 999874
No 65
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=3.6e-10 Score=111.08 Aligned_cols=81 Identities=33% Similarity=0.473 Sum_probs=74.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
++.|+|.|||+..+..+|+.||+.||.|++|+|+.+..+ +..+|||||+|-++.+|.+|+++|..+.+.| |.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k---~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG-----Rr 684 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGK---GAHRGFGFVDFLTPREAKNAFDALGSTHLYG-----RR 684 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcc---hhhccceeeeccCcHHHHHHHHhhcccceec-----hh
Confidence 578999999999999999999999999999999976332 5568999999999999999999999999999 78
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|.++||+..
T Consensus 685 LVLEwA~~d 693 (725)
T KOG0110|consen 685 LVLEWAKSD 693 (725)
T ss_pred hheehhccc
Confidence 999999874
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.98 E-value=5.1e-10 Score=100.53 Aligned_cols=74 Identities=24% Similarity=0.347 Sum_probs=69.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|+|+||.+.|+.+||+..|++||.|+++.|+++ |+||.|+-.++|..|++.||+++|.+ +
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----------y~fvh~d~~eda~~air~l~~~~~~g-----k 140 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----------YAFVHFDRAEDAVEAIRGLDNTEFQG-----K 140 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----------eeEEEEeeccchHHHHhccccccccc-----c
Confidence 4689999999999999999999999999999999854 99999999999999999999999999 4
Q ss_pred cEEEEeecCC
Q 025393 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|+.+.+.
T Consensus 141 ~m~vq~stsr 150 (346)
T KOG0109|consen 141 RMHVQLSTSR 150 (346)
T ss_pred eeeeeeeccc
Confidence 7999999875
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.7e-09 Score=101.83 Aligned_cols=75 Identities=17% Similarity=0.334 Sum_probs=67.7
Q ss_pred EEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEE
Q 025393 156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 235 (253)
Q Consensus 156 LfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V 235 (253)
|||.||+..++..+|.++|+.||+|.+|++..+.. | +||| ||+|+++++|.+|++.|||..+.++ .|.|
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~----g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k-----ki~v 147 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN----G-SKGY-FVQFESEESAKKAIEKLNGMLLNGK-----KIYV 147 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC----C-ceee-EEEeCCHHHHHHHHHHhcCcccCCC-----eeEE
Confidence 99999999999999999999999999999998875 5 8999 9999999999999999999999985 4776
Q ss_pred EeecCC
Q 025393 236 QFSRNP 241 (253)
Q Consensus 236 ~~ak~~ 241 (253)
......
T Consensus 148 g~~~~~ 153 (369)
T KOG0123|consen 148 GLFERK 153 (369)
T ss_pred eeccch
Confidence 555443
No 68
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=1.6e-09 Score=99.24 Aligned_cols=75 Identities=19% Similarity=0.353 Sum_probs=65.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHH-cCceeCCCCCCCc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L-nG~~i~g~~~~~r 231 (253)
..||||++|-..++|.+|+++|.+||+|+.++++..+ +||||+|.+++.|+.|.+++ |-..|++ .
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~---------~CAFv~ftTR~aAE~Aae~~~n~lvI~G-----~ 293 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK---------GCAFVTFTTREAAEKAAEKSFNKLVING-----F 293 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc---------ccceeeehhhHHHHHHHHhhcceeeecc-----e
Confidence 5789999999999999999999999999999998765 49999999999999997655 4444555 5
Q ss_pred cEEEEeecCC
Q 025393 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|.|++..
T Consensus 294 Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 294 RLKIKWGRPK 303 (377)
T ss_pred EEEEEeCCCc
Confidence 7999999983
No 69
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.96 E-value=1.6e-09 Score=93.04 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=69.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCC-CcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~f-G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
...+||..+|+-+.+.+|..+|.+| |.+..+++-.++.+ |.+||||||+|++++.|+-|.+.||+|.+.++
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrT---GNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~----- 120 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRT---GNSKGYAFVEFESEEVAKIAAETMNNYLLMEH----- 120 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccccc---CCcCceEEEEeccHHHHHHHHHHhhhhhhhhh-----
Confidence 4578999999999999999999999 66777777655544 99999999999999999999999999999994
Q ss_pred cEEEEeecC
Q 025393 232 FLRLQFSRN 240 (253)
Q Consensus 232 ~L~V~~ak~ 240 (253)
.|.+.|-..
T Consensus 121 lL~c~vmpp 129 (214)
T KOG4208|consen 121 LLECHVMPP 129 (214)
T ss_pred eeeeEEeCc
Confidence 578777543
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=2.4e-09 Score=105.36 Aligned_cols=80 Identities=28% Similarity=0.373 Sum_probs=69.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025393 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 234 (253)
Q Consensus 155 tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~ 234 (253)
+|||.||++++|.++|..+|...|.|+++.|...+....-=.+.||+||+|.+.++|+.|+++|||+.|+++ .|.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH-----~l~ 591 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH-----KLE 591 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc-----eEE
Confidence 399999999999999999999999999999886553211123669999999999999999999999999996 599
Q ss_pred EEeec
Q 025393 235 LQFSR 239 (253)
Q Consensus 235 V~~ak 239 (253)
|+++.
T Consensus 592 lk~S~ 596 (725)
T KOG0110|consen 592 LKISE 596 (725)
T ss_pred EEecc
Confidence 99988
No 71
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.81 E-value=1.3e-08 Score=90.34 Aligned_cols=80 Identities=21% Similarity=0.347 Sum_probs=71.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
..+|+|.|||..|++++|+++|+.|+.++.+-|-.++. |++.|+|-|.|...++|+.|++.|||..+++ ++
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~----G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG-----~~ 153 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA----GRSLGTADVSFNRRDDAERAVKKYNGVALDG-----RP 153 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC----CCCCccceeeecchHhHHHHHHHhcCcccCC-----ce
Confidence 47899999999999999999999999888777766654 8999999999999999999999999999988 56
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+++....+
T Consensus 154 mk~~~i~~~ 162 (243)
T KOG0533|consen 154 MKIEIISSP 162 (243)
T ss_pred eeeEEecCc
Confidence 888777655
No 72
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.78 E-value=1.7e-08 Score=89.31 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
...+||+|+.+.+|.+++..+|+.||.|..|.|.+++.+ +++|||+||+|.+.+.+++|+. ||+..|.+ +.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~---~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~-----~~ 171 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFR---GHPKGFAYVEFSSYELVEEAYK-LDGSEIPG-----PA 171 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccC---CCcceeEEEecccHhhhHHHhh-cCCccccc-----cc
Confidence 468999999999999999999999999998888887765 7899999999999999999998 99999998 57
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|.|++.+.+
T Consensus 172 i~vt~~r~~ 180 (231)
T KOG4209|consen 172 IEVTLKRTN 180 (231)
T ss_pred ceeeeeeee
Confidence 999988775
No 73
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.76 E-value=6e-09 Score=90.77 Aligned_cols=69 Identities=28% Similarity=0.511 Sum_probs=61.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 227 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 227 (253)
.|.||||.||..+|+|++|+.+|+.|-.+..++|-.+. |. ..|||+|++.+.|+.|+..|+|..|...+
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-----g~--~vaf~~~~~~~~at~am~~lqg~~~s~~d 277 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-----GM--PVAFADFEEIEQATDAMNHLQGNLLSSSD 277 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-----Cc--ceEeecHHHHHHHHHHHHHhhcceecccc
Confidence 57899999999999999999999999988888876443 44 38999999999999999999999997655
No 74
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=9.7e-09 Score=94.87 Aligned_cols=167 Identities=14% Similarity=0.262 Sum_probs=106.0
Q ss_pred ccccccc-ccccCCCCCCCccccchhHHhhhhcCCcccCCCCcCCCCCCcccCCCCCCCCCCCCCCCccccCCCCCCCCc
Q 025393 42 NYLSQDD-DLGELQPLKDTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPDL 120 (253)
Q Consensus 42 ~y~~~~~-~r~~~~~~~~~~~~~~~~dr~~~~~~~~~~~~g~~~~~gg~G~~r~~~gg~~g~~~~~~~~~g~~g~gg~~~ 120 (253)
.|.++|| -|..+-.|...|+|..++|-...-+....|-.=|-....- =+. --|+| .|+|+
T Consensus 122 sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAq----LAl-EqMNg------~mlGG-------- 182 (544)
T KOG0124|consen 122 SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQ----LAL-EQMNG------QMLGG-------- 182 (544)
T ss_pred EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHH----HHH-HHhcc------ccccC--------
Confidence 4556654 4999999999999999999764444333232211000000 001 13444 22222
Q ss_pred cCCCCcCCCCCCCCcc-ccCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccce
Q 025393 121 VQNLRSSSIDDQLPFD-AAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLI 199 (253)
Q Consensus 121 ~~~gr~~g~g~~~p~~-~~~~pg~~~~~~p~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG 199 (253)
|++-.+. |.+ +.+.|--.........-+.|||..+.++++|++|+.+|+-||+|+.|.+....+. +..||
T Consensus 183 ----RNiKVgr--PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~---~~HkG 253 (544)
T KOG0124|consen 183 ----RNIKVGR--PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG---RGHKG 253 (544)
T ss_pred ----ccccccC--CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCC---CCccc
Confidence 4443332 110 0000000000001113478999999999999999999999999999999866643 56789
Q ss_pred EEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeecCC
Q 025393 200 LCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNP 241 (253)
Q Consensus 200 ~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~ak~~ 241 (253)
|+||||.+.....+|+..||=..+.++ -|+|--+-.|
T Consensus 254 yGfiEy~n~qs~~eAiasMNlFDLGGQ-----yLRVGk~vTP 290 (544)
T KOG0124|consen 254 YGFIEYNNLQSQSEAIASMNLFDLGGQ-----YLRVGKCVTP 290 (544)
T ss_pred eeeEEeccccchHHHhhhcchhhcccc-----eEecccccCC
Confidence 999999999999999999999999885 4777655443
No 75
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.74 E-value=2.3e-08 Score=98.54 Aligned_cols=93 Identities=25% Similarity=0.284 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcC
Q 025393 141 PGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 220 (253)
Q Consensus 141 pg~~~~~~p~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG 220 (253)
|+.-+...|. .+.|||+||++.++|+.|...|..||.|..|+|+..++.-..-+.+-|+||.|-++.+|++|++.|||
T Consensus 164 ~gsfDdgDP~--TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg 241 (877)
T KOG0151|consen 164 PGSFDDGDPQ--TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG 241 (877)
T ss_pred CCcCCCCCCc--ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc
Confidence 3444433333 36799999999999999999999999999999994432111133456999999999999999999999
Q ss_pred ceeCCCCCCCccEEEEeecC
Q 025393 221 YRMDEDDPDSKFLRLQFSRN 240 (253)
Q Consensus 221 ~~i~g~~~~~r~L~V~~ak~ 240 (253)
..|.. ..|++-|+|.
T Consensus 242 ~iv~~-----~e~K~gWgk~ 256 (877)
T KOG0151|consen 242 IIVME-----YEMKLGWGKA 256 (877)
T ss_pred eeeee-----eeeeeccccc
Confidence 99998 5799999975
No 76
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=3.1e-08 Score=93.28 Aligned_cols=73 Identities=26% Similarity=0.372 Sum_probs=66.9
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 233 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 233 (253)
..|||+ +++||..|.++|+++|.|.++++..+. + +.|||||.|.++++|++||++||-..+.+ ++|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-----slgy~yvnf~~~~da~~A~~~~n~~~~~~-----~~~ 67 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-----SLGYAYVNFQQPADAERALDTMNFDVLKG-----KPI 67 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-----ccceEEEecCCHHHHHHHHHHcCCcccCC-----cEE
Confidence 469999 899999999999999999999998765 2 67899999999999999999999999999 589
Q ss_pred EEEeecC
Q 025393 234 RLQFSRN 240 (253)
Q Consensus 234 ~V~~ak~ 240 (253)
+|.|+..
T Consensus 68 rim~s~r 74 (369)
T KOG0123|consen 68 RIMWSQR 74 (369)
T ss_pred Eeehhcc
Confidence 9999865
No 77
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=9e-09 Score=89.41 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=67.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
..||||+|+-..++|+-|.++|-+.|.|+.|.|...+. ++.| ||||+|.++....-|++.|||.++.+. .
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d----~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~-----e 78 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD----QEQK-FAYVFFPNENSVQLAGQLENGDDLEED-----E 78 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc----CCCc-eeeeecccccchhhhhhhcccchhccc-----h
Confidence 48999999999999999999999999999999986654 6677 999999999999999999999999884 4
Q ss_pred EEEEee
Q 025393 233 LRLQFS 238 (253)
Q Consensus 233 L~V~~a 238 (253)
|+|++-
T Consensus 79 ~q~~~r 84 (267)
T KOG4454|consen 79 EQRTLR 84 (267)
T ss_pred hhcccc
Confidence 666553
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=3.1e-08 Score=86.50 Aligned_cols=71 Identities=24% Similarity=0.436 Sum_probs=64.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025393 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 234 (253)
Q Consensus 155 tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~ 234 (253)
.+||++||+.+.+.+|.++|..||.|.++.+.. ||+||+|++..+|+.|+..||+..|.+. .+.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-----------gf~fv~fed~rda~Dav~~l~~~~l~~e-----~~v 66 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN-----------GFGFVEFEDPRDADDAVHDLDGKELCGE-----RLV 66 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec-----------ccceeccCchhhhhcccchhcCceecce-----eee
Confidence 589999999999999999999999999887752 4899999999999999999999999985 389
Q ss_pred EEeecCC
Q 025393 235 LQFSRNP 241 (253)
Q Consensus 235 V~~ak~~ 241 (253)
|+|++..
T Consensus 67 ve~~r~~ 73 (216)
T KOG0106|consen 67 VEHARGK 73 (216)
T ss_pred eeccccc
Confidence 9999865
No 79
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.64 E-value=2.9e-08 Score=91.23 Aligned_cols=63 Identities=24% Similarity=0.396 Sum_probs=57.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHH
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 217 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 217 (253)
..++|||++|+|+++++.|++.|++||+|.++.++.+..+ ++++||+||+|++.++..++|..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t---~rsrgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPST---GRSRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCC---CCcccccceecCCCcchheeecc
Confidence 3589999999999999999999999999999999988766 88999999999999998888743
No 80
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.64 E-value=5.5e-08 Score=94.12 Aligned_cols=81 Identities=16% Similarity=0.343 Sum_probs=71.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.+.|||.+|...+...+|+.||++||.|+-.+|+++... ++ -++|+||++.+.++|.+||+.||-+.|.+ +.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRs-PG--aRCYGfVTMSts~eAtkCI~hLHrTELHG-----rm 476 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARS-PG--ARCYGFVTMSTSAEATKCIEHLHRTELHG-----RM 476 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCC-CC--cceeEEEEecchHHHHHHHHHhhhhhhcc-----ee
Confidence 467999999999999999999999999999999977543 33 35799999999999999999999999998 67
Q ss_pred EEEEeecCC
Q 025393 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|.|+-+|+.
T Consensus 477 ISVEkaKNE 485 (940)
T KOG4661|consen 477 ISVEKAKNE 485 (940)
T ss_pred eeeeecccC
Confidence 999999874
No 81
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.63 E-value=9.4e-08 Score=91.02 Aligned_cols=80 Identities=28% Similarity=0.466 Sum_probs=64.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
...+|||.|||+++++++|+++|.+||.|++..|.... ++++...|+||+|.+.+++..||++- =..|.+ +
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~---~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~-----~ 357 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS---PGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG-----R 357 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEec---cCCCcCceEEEEEeecchhhhhhhcC-ccccCC-----e
Confidence 45679999999999999999999999999999888655 22555589999999999999999765 333343 5
Q ss_pred cEEEEeecC
Q 025393 232 FLRLQFSRN 240 (253)
Q Consensus 232 ~L~V~~ak~ 240 (253)
.|.|+--+.
T Consensus 358 kl~Veek~~ 366 (419)
T KOG0116|consen 358 KLNVEEKRP 366 (419)
T ss_pred eEEEEeccc
Confidence 688876655
No 82
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=4.9e-08 Score=94.10 Aligned_cols=67 Identities=25% Similarity=0.339 Sum_probs=60.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 226 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~ 226 (253)
+..+|+|-|||..|++++|..+|+.||+|++|+.-..+. |.+||+|-|..+|++|+++|++.+|.++
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~--------~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR--------GIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC--------ceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 467999999999999999999999999999987765542 5899999999999999999999999885
No 83
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.57 E-value=1.9e-07 Score=81.37 Aligned_cols=76 Identities=28% Similarity=0.621 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++.+||+.|||..++.+.|..+|++|...++|+++.... +.|||+|.+...|..|...|++..|--. .
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~--------~iAfve~~~d~~a~~a~~~lq~~~it~~----~ 212 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS--------GIAFVEFLSDRQASAAQQALQGFKITKK----N 212 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC--------ceeEEecchhhhhHHHhhhhccceeccC----c
Confidence 468999999999999999999999999999999997653 5899999999999999999999999853 3
Q ss_pred cEEEEeec
Q 025393 232 FLRLQFSR 239 (253)
Q Consensus 232 ~L~V~~ak 239 (253)
+|+|.|++
T Consensus 213 ~m~i~~a~ 220 (221)
T KOG4206|consen 213 TMQITFAK 220 (221)
T ss_pred eEEecccC
Confidence 79999886
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.54 E-value=2.8e-07 Score=84.68 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEE--------EEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCcee
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 223 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~--------vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i 223 (253)
-++.|||.|||.++|-+++.++|++||.|.. |+|...+. |+.||=|++.|--.++.+.|++.|++..|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~----G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ----GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC----CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3566999999999999999999999998864 55555443 99999999999999999999999999999
Q ss_pred CCCCCCCccEEEEeecCC
Q 025393 224 DEDDPDSKFLRLQFSRNP 241 (253)
Q Consensus 224 ~g~~~~~r~L~V~~ak~~ 241 (253)
.+. .|+|+-|+..
T Consensus 209 rg~-----~~rVerAkfq 221 (382)
T KOG1548|consen 209 RGK-----KLRVERAKFQ 221 (382)
T ss_pred cCc-----EEEEehhhhh
Confidence 984 6999999874
No 85
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.44 E-value=2e-06 Score=80.73 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=70.2
Q ss_pred CCEEEEeCCCCC-CCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 153 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLfV~nLp~~-vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+..|.|.||..+ +|.+.|..+|+-||.|..|+|+.++.. -|+|++.+...|+-|++.|+|.++.+ +
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd--------~ALIQmsd~~qAqLA~~hL~g~~l~g-----k 363 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD--------NALIQMSDGQQAQLAMEHLEGHKLYG-----K 363 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc--------ceeeeecchhHHHHHHHHhhcceecC-----c
Confidence 578999999876 899999999999999999999977643 59999999999999999999999999 5
Q ss_pred cEEEEeecCCC
Q 025393 232 FLRLQFSRNPG 242 (253)
Q Consensus 232 ~L~V~~ak~~~ 242 (253)
.|+|.++|...
T Consensus 364 ~lrvt~SKH~~ 374 (492)
T KOG1190|consen 364 KLRVTLSKHTN 374 (492)
T ss_pred eEEEeeccCcc
Confidence 79999999974
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.38 E-value=3.2e-07 Score=81.32 Aligned_cols=77 Identities=17% Similarity=0.366 Sum_probs=69.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
-..||++.|..+++.+.|...|.+|-.+...+++.++.+ |++|||+||.|.+.+++..|++.|+|..+.. |+
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRT---gKSkgygfVSf~~pad~~rAmrem~gkyVgs-----rp 261 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRT---GKSKGYGFVSFRDPADYVRAMREMNGKYVGS-----RP 261 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccc---cccccceeeeecCHHHHHHHHHhhccccccc-----ch
Confidence 467999999999999999999999999988888877755 9999999999999999999999999999876 67
Q ss_pred EEEEe
Q 025393 233 LRLQF 237 (253)
Q Consensus 233 L~V~~ 237 (253)
|++.-
T Consensus 262 iklRk 266 (290)
T KOG0226|consen 262 IKLRK 266 (290)
T ss_pred hHhhh
Confidence 77643
No 87
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.33 E-value=4.7e-06 Score=64.32 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=67.3
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCC--CcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 154 STLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~f--G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+||=|.|||...|.++|.+++... |.+.-+-|+.+..+ ....|||||.|.+++.|.+-.+.++|.++..-. ..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~---~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~-s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKN---KCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFN-SKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccC---CCceEEEEEEcCCHHHHHHHHHHHcCCccccCC-CCc
Confidence 689999999999999999888643 55555556544432 456799999999999999999999999997542 236
Q ss_pred cEEEEeecCCC
Q 025393 232 FLRLQFSRNPG 242 (253)
Q Consensus 232 ~L~V~~ak~~~ 242 (253)
.+.|.||+-.+
T Consensus 78 vc~i~yAriQG 88 (97)
T PF04059_consen 78 VCEISYARIQG 88 (97)
T ss_pred EEEEehhHhhC
Confidence 78999998643
No 88
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.30 E-value=8.1e-07 Score=81.77 Aligned_cols=70 Identities=19% Similarity=0.358 Sum_probs=59.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
...+|||++||.++++++|++.|++||.|..+.++.+..+ .+++||+||.|.+++.+++++. ..-+.|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~---~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~g 165 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT---SRPRGFGFVTFDSEDSVDKVTL-QKFHDFNG 165 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc---cccccceeeEeccccccceecc-cceeeecC
Confidence 3678999999999999999999999999888888877665 7789999999999999999873 34445555
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.22 E-value=3.6e-06 Score=77.71 Aligned_cols=81 Identities=19% Similarity=0.336 Sum_probs=69.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEE--------EEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 224 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~--------vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~ 224 (253)
+.||||-+||..+++++|.++|.+++.|.. |.|-+++.+ +++|+=|.|.|++...|+.|+..+++..+.
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT---~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKET---GAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccc---cCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 579999999999999999999999998853 334444433 889999999999999999999999999999
Q ss_pred CCCCCCccEEEEeecCC
Q 025393 225 EDDPDSKFLRLQFSRNP 241 (253)
Q Consensus 225 g~~~~~r~L~V~~ak~~ 241 (253)
++ +|+|.++...
T Consensus 143 gn-----~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GN-----TIKVSLAERR 154 (351)
T ss_pred CC-----Cchhhhhhhc
Confidence 94 6898888654
No 90
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.18 E-value=8.3e-06 Score=75.93 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=66.6
Q ss_pred CCEEEEeCCC--CCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025393 153 SSTLYVEGLP--ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 153 ~~tLfV~nLp--~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
++.|.+.=|. ..+|-+-|..|....|.|..|.|+++. | ..|.|||++.+.|++|.++|||..|...++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----g---VQAmVEFdsv~~AqrAk~alNGADIYsGCC-- 189 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----G---VQAMVEFDSVEVAQRAKAALNGADIYSGCC-- 189 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----c---eeeEEeechhHHHHHHHhhcccccccccce--
Confidence 5666665444 569999999999999999999998664 2 479999999999999999999999988774
Q ss_pred ccEEEEeecCC
Q 025393 231 KFLRLQFSRNP 241 (253)
Q Consensus 231 r~L~V~~ak~~ 241 (253)
+|+|+|||..
T Consensus 190 -TLKIeyAkP~ 199 (494)
T KOG1456|consen 190 -TLKIEYAKPT 199 (494)
T ss_pred -eEEEEecCcc
Confidence 8999999864
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.18 E-value=1.2e-05 Score=60.45 Aligned_cols=69 Identities=22% Similarity=0.281 Sum_probs=47.6
Q ss_pred CEEEEeCCCCCCCHHH----HHHhhcCCCc-EEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025393 154 STLYVEGLPADSTKRE----VAHIFRPFVG-YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~----L~~lF~~fG~-i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
+.|||.|||.+.+... |+.|+..||+ |.+| .. +.|+|.|.+.+.|++|.+.|+|..+.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---~~----------~tAilrF~~~~~A~RA~KRmegEdVfG~-- 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---SG----------GTAILRFPNQEFAERAQKRMEGEDVFGN-- 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T----------T-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---eC----------CEEEEEeCCHHHHHHHHHhhcccccccc--
Confidence 5799999999988665 6688889965 3333 11 3799999999999999999999999995
Q ss_pred CCccEEEEeecC
Q 025393 229 DSKFLRLQFSRN 240 (253)
Q Consensus 229 ~~r~L~V~~ak~ 240 (253)
.|.|+|...
T Consensus 68 ---kI~v~~~~~ 76 (90)
T PF11608_consen 68 ---KISVSFSPK 76 (90)
T ss_dssp -----EEESS--
T ss_pred ---eEEEEEcCC
Confidence 599999854
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.15 E-value=7.5e-06 Score=76.90 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=65.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++.||...|+|.+++||+|+++|..-|..+.......+. +-++++.+++.|+|..|+..|+.+.+.+..
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd-------~kmal~q~~sveeA~~ali~~hnh~lgen~---- 481 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD-------RKMALPQLESVEEAIQALIDLHNHYLGENH---- 481 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC-------cceeecccCChhHhhhhccccccccCCCCc----
Confidence 478999999999999999999999998765443332221 228999999999999999999999999874
Q ss_pred cEEEEeecC
Q 025393 232 FLRLQFSRN 240 (253)
Q Consensus 232 ~L~V~~ak~ 240 (253)
.|||+|+|+
T Consensus 482 hlRvSFSks 490 (492)
T KOG1190|consen 482 HLRVSFSKS 490 (492)
T ss_pred eEEEEeecc
Confidence 599999986
No 93
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.06 E-value=2.6e-06 Score=82.56 Aligned_cols=81 Identities=23% Similarity=0.437 Sum_probs=73.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..+.+||++||..+++.++.++...||.++..+++.+... |.+|||||.+|.+......|+..|||+.+.+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~---g~skg~af~ey~dpsvtd~A~agLnGm~lgd~----- 359 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT---GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK----- 359 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc---ccccceeeeeeeCCcchhhhhcccchhhhcCc-----
Confidence 4578999999999999999999999999999999987765 78899999999999999999999999999984
Q ss_pred cEEEEeecC
Q 025393 232 FLRLQFSRN 240 (253)
Q Consensus 232 ~L~V~~ak~ 240 (253)
.|.|+.|-.
T Consensus 360 ~lvvq~A~~ 368 (500)
T KOG0120|consen 360 KLVVQRAIV 368 (500)
T ss_pred eeEeehhhc
Confidence 688887743
No 94
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.06 E-value=8.9e-06 Score=77.83 Aligned_cols=57 Identities=21% Similarity=0.372 Sum_probs=48.9
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHH
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALS 216 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~ 216 (253)
..|-+.+|||++|++||.++|+.++ |.++.+.... |++.|=|||||++.+++++|++
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~-----Gr~sGeA~Ve~~seedv~~Alk 67 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRN-----GRPSGEAYVEFTSEEDVEKALK 67 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccC-----CCcCcceEEEeechHHHHHHHH
Confidence 4567789999999999999999995 7776665443 7888999999999999999995
No 95
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.02 E-value=8.3e-05 Score=73.94 Aligned_cols=76 Identities=22% Similarity=0.407 Sum_probs=62.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEE-EEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~-vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++.|-|.|+|++++-+||.++|..|-.+-. |++..++. |++.|-|.|.|++.++|..|...|++.+|.. |
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~----G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n-----r 937 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDD----GVPTGECMVAFESQEEARRASMDLDGQKIRN-----R 937 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCC----CCcccceeEeecCHHHHHhhhhccccCcccc-----e
Confidence 347889999999999999999999966543 34433332 8889999999999999999999999999987 5
Q ss_pred cEEEEe
Q 025393 232 FLRLQF 237 (253)
Q Consensus 232 ~L~V~~ 237 (253)
+++|.+
T Consensus 938 ~V~l~i 943 (944)
T KOG4307|consen 938 VVSLRI 943 (944)
T ss_pred eEEEEe
Confidence 676653
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.92 E-value=1.2e-05 Score=73.48 Aligned_cols=80 Identities=26% Similarity=0.311 Sum_probs=70.9
Q ss_pred CCEEE-EeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 153 SSTLY-VEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLf-V~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++| |++|++++++++|+.+|..++.|..+++...... +.++||+||+|.+...+..|+.. +...+.+ +
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s---~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~-----~ 254 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEES---GDSKGFAYVDFSAGNSKKLALND-QTRSIGG-----R 254 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCc---cchhhhhhhhhhhchhHHHHhhc-ccCcccC-----c
Confidence 45566 9999999999999999999999999999987765 89999999999999999999877 7778777 6
Q ss_pred cEEEEeecCC
Q 025393 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
++.|.+.+..
T Consensus 255 ~~~~~~~~~~ 264 (285)
T KOG4210|consen 255 PLRLEEDEPR 264 (285)
T ss_pred ccccccCCCC
Confidence 8999998875
No 97
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.84 E-value=5.5e-05 Score=59.16 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=39.8
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 221 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~ 221 (253)
..|+|.+++..++.++|+++|++|+.|..|.+..... -|||-|.+.+.|++|+.++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~---------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT---------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S---------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC---------EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999988876543 6999999999999999887655
No 98
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.77 E-value=3.4e-05 Score=72.92 Aligned_cols=71 Identities=24% Similarity=0.321 Sum_probs=57.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeec---CCccCCCcc-------ceEEEEEeCCHHHHHHHHHHHcCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK---ESKLRGGDP-------LILCFVDFENPACAATALSALQGY 221 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~---~~~~~gG~~-------kG~aFVeF~~~~~A~~Al~~LnG~ 221 (253)
+++||.+.|||.+-.-+.|.+||+.+|.|+.|+|..- ....++..+ +-||||||+..+.|.+|.+.|+-.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5799999999999888999999999999999999854 222122222 568999999999999999988543
Q ss_pred e
Q 025393 222 R 222 (253)
Q Consensus 222 ~ 222 (253)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 99
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.71 E-value=2.3e-05 Score=68.59 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=59.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.+.|+|.||+..+.+.+|.++|+++|.+.++.+ .. +++||+|.+.++|.+|+..|++.++.+. .
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~---------~~~~v~Fs~~~da~ra~~~l~~~~~~~~-----~ 162 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RR---------NFAFVEFSEQEDAKRALEKLDGKKLNGR-----R 162 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh--hc---------cccceeehhhhhhhhcchhccchhhcCc-----e
Confidence 478999999999999999999999999855544 11 3899999999999999999999999984 5
Q ss_pred EEEEe
Q 025393 233 LRLQF 237 (253)
Q Consensus 233 L~V~~ 237 (253)
|++..
T Consensus 163 l~~~~ 167 (216)
T KOG0106|consen 163 ISVEK 167 (216)
T ss_pred eeecc
Confidence 77743
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=7.7e-05 Score=72.64 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=61.9
Q ss_pred CCEEEEeCCCCCCC------HHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025393 153 SSTLYVEGLPADST------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 226 (253)
Q Consensus 153 ~~tLfV~nLp~~vt------e~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~ 226 (253)
-+.|+|.|+|---. ..-|..+|+++|.|+.+.+..... |.++||.|++|++..+|+.|++.|||+.|+.+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~----ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE----GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc----CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 36799999985321 224678999999999988886654 66999999999999999999999999999987
Q ss_pred CCCCccEEEE
Q 025393 227 DPDSKFLRLQ 236 (253)
Q Consensus 227 ~~~~r~L~V~ 236 (253)
+ .+.|.
T Consensus 134 H----tf~v~ 139 (698)
T KOG2314|consen 134 H----TFFVR 139 (698)
T ss_pred c----eEEee
Confidence 5 56654
No 101
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.64 E-value=1.2e-05 Score=77.73 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
...|+|+--|...+++.+|.++|+.+|.|..|+++.++.. +.+||.|||+|.+.+..-.|| +|.|..+.+.
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s---~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~----- 248 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNS---RRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGV----- 248 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccc---hhhcceeEEEEecccchhhHh-hhcCCcccCc-----
Confidence 4578999999999999999999999999999999988765 779999999999999999998 9999999984
Q ss_pred cEEEEeecC
Q 025393 232 FLRLQFSRN 240 (253)
Q Consensus 232 ~L~V~~ak~ 240 (253)
+|.|+....
T Consensus 249 pv~vq~sEa 257 (549)
T KOG0147|consen 249 PVIVQLSEA 257 (549)
T ss_pred eeEecccHH
Confidence 677776644
No 102
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.60 E-value=5.3e-05 Score=70.14 Aligned_cols=80 Identities=10% Similarity=0.178 Sum_probs=65.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCC--cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG--~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
...+||+||-|++|+++|.+.....| .|.+++++.++.. |++||||+|...+....++-++.|--+.|.+++
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~N---GQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~--- 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTN---GQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS--- 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccC---CcccceEEEEecchHHHHHHHHhcccceecCCC---
Confidence 35699999999999999988877654 4566677766543 999999999999999999999999999999986
Q ss_pred ccEEEEeec
Q 025393 231 KFLRLQFSR 239 (253)
Q Consensus 231 r~L~V~~ak 239 (253)
+..+.|.|
T Consensus 154 -P~V~~~NK 161 (498)
T KOG4849|consen 154 -PTVLSYNK 161 (498)
T ss_pred -Ceeeccch
Confidence 45555554
No 103
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.54 E-value=0.00031 Score=67.49 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=48.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHH
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 217 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 217 (253)
..+|-+.+||+.||++||.++|+-.--+....++..... +++.|-|||.|++.+.|++||..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r---gR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR---GRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC---CCcccceEEEecCHHHHHHHHHH
Confidence 367889999999999999999997744433222333222 77889999999999999999854
No 104
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.53 E-value=0.00028 Score=65.17 Aligned_cols=83 Identities=18% Similarity=0.357 Sum_probs=63.0
Q ss_pred CCEEEEeCCCCCCCHHH----H--HHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025393 153 SSTLYVEGLPADSTKRE----V--AHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 226 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~----L--~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~ 226 (253)
.+-+||-+|++.+..|+ | .++|.+||.|+.|.+..+......-....-.||+|.+.++|.+||.+.+|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG- 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG- 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC-
Confidence 46799999999987776 2 3789999999988776443211101111225999999999999999999999999
Q ss_pred CCCCccEEEEeecC
Q 025393 227 DPDSKFLRLQFSRN 240 (253)
Q Consensus 227 ~~~~r~L~V~~ak~ 240 (253)
|.|+..|...
T Consensus 193 ----r~lkatYGTT 202 (480)
T COG5175 193 ----RVLKATYGTT 202 (480)
T ss_pred ----ceEeeecCch
Confidence 6899988753
No 105
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.46 E-value=0.00028 Score=48.38 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=41.6
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHH
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 215 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al 215 (253)
+.|-|.+.+.+..+. +.+.|.+||+|.++.+.... -+.+|.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~---------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST---------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC---------cEEEEEECCHHHHHhhC
Confidence 568889988776644 55588899999998886332 28999999999999985
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.44 E-value=0.00092 Score=62.58 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=67.9
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025393 152 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 152 ~~~tLfV~nLp~~-vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
+.+.+-|-+|... ++-+.|..||..||.|..|++++.+. |-|.||+.|..+.++|+..||+..+.+.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~--------gtamVemgd~~aver~v~hLnn~~lfG~---- 353 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP--------GTAMVEMGDAYAVERAVTHLNNIPLFGG---- 353 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc--------ceeEEEcCcHHHHHHHHHHhccCccccc----
Confidence 3678999999876 67788999999999999999997664 4799999999999999999999999985
Q ss_pred ccEEEEeecCC
Q 025393 231 KFLRLQFSRNP 241 (253)
Q Consensus 231 r~L~V~~ak~~ 241 (253)
.|.|.++|.+
T Consensus 354 -kl~v~~SkQ~ 363 (494)
T KOG1456|consen 354 -KLNVCVSKQN 363 (494)
T ss_pred -eEEEeecccc
Confidence 5888888875
No 107
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.22 E-value=0.00031 Score=68.84 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=64.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhc-CCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025393 151 DASSTLYVEGLPADSTKREVAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 229 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~-~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 229 (253)
..++.|||.||-.-.|.-+|+.|+. .+|.|.+..|-.-+ --|||.|.+.++|.+.+.+|||.++...++
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK---------ShCyV~yss~eEA~atr~AlhnV~WP~sNP- 511 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK---------SHCYVSYSSVEEAAATREALHNVQWPPSNP- 511 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh---------cceeEecccHHHHHHHHHHHhccccCCCCC-
Confidence 4579999999999999999999999 45556555332222 249999999999999999999999988776
Q ss_pred CccEEEEeecC
Q 025393 230 SKFLRLQFSRN 240 (253)
Q Consensus 230 ~r~L~V~~ak~ 240 (253)
+.|.+.|...
T Consensus 512 -K~L~adf~~~ 521 (718)
T KOG2416|consen 512 -KHLIADFVRA 521 (718)
T ss_pred -ceeEeeecch
Confidence 7799999864
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0014 Score=63.49 Aligned_cols=66 Identities=29% Similarity=0.334 Sum_probs=48.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccce---EEEEEeCCHHHHHHHHHHH
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLI---LCFVDFENPACAATALSAL 218 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG---~aFVeF~~~~~A~~Al~~L 218 (253)
-+++|||++||++++|++|...|..||.+. |....+......--++| |+|+.|+++.....-+.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 367899999999999999999999999863 33332221111123667 9999999988877766544
No 109
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.07 E-value=0.00078 Score=68.79 Aligned_cols=79 Identities=19% Similarity=0.332 Sum_probs=69.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
++.|||++|..++....|...|..||.|..|.+-... -|++|.|++...|+.|++.|-|..|.+-+ +.
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq---------~yayi~yes~~~aq~a~~~~rgap~G~P~---~r 522 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ---------PYAYIQYESPPAAQAATHDMRGAPLGGPP---RR 522 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC---------cceeeecccCccchhhHHHHhcCcCCCCC---cc
Confidence 5789999999999999999999999999887664332 39999999999999999999999999865 56
Q ss_pred EEEEeecCCCC
Q 025393 233 LRLQFSRNPGP 243 (253)
Q Consensus 233 L~V~~ak~~~~ 243 (253)
|+|.|+..++.
T Consensus 523 ~rvdla~~~~~ 533 (975)
T KOG0112|consen 523 LRVDLASPPGA 533 (975)
T ss_pred cccccccCCCC
Confidence 99999988743
No 110
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.03 E-value=0.00066 Score=63.79 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=55.2
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
..|-|.||.+.+|.++++.||...|.|.+++|.........--..-.|||.|.|..++..|- .|..++|-+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvd 78 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVD 78 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeee
Confidence 37899999999999999999999999999999864321111123347999999999998885 566666655
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.96 E-value=0.00035 Score=70.83 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
...|||.|+|+..|.++|+.+|..+|.++++++++.+. |++||.|||.|.++.+|..++...+...+... .
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~----gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~-----~ 806 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA----GKPKGKARVDYNTEADASRKVASVDVAGKREN-----N 806 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc----cccccceeccCCCcchhhhhcccchhhhhhhc-----C
Confidence 45799999999999999999999999999999887654 99999999999999999999988888877774 4
Q ss_pred EEEEeecC
Q 025393 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
+.|+.+..
T Consensus 807 ~~v~vsnp 814 (881)
T KOG0128|consen 807 GEVQVSNP 814 (881)
T ss_pred ccccccCC
Confidence 66666433
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0028 Score=61.42 Aligned_cols=67 Identities=30% Similarity=0.302 Sum_probs=57.0
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHhhc-CCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHH
Q 025393 147 PLPPDASSTLYVEGLPADSTKREVAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALS 216 (253)
Q Consensus 147 ~~p~~~~~tLfV~nLp~~vte~~L~~lF~-~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~ 216 (253)
..+-++.+|||||+||--++.+||..||+ -||.|..+-|-++..- .-+||-+=|+|.+...=.+||.
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~---KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL---KYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc---CCCCCcceeeecccHHHHHHHh
Confidence 34555789999999999999999999999 7899999988777332 4578899999999998888886
No 113
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.86 E-value=0.0032 Score=58.43 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=58.6
Q ss_pred CCCEEEEeCCC----CCCC-------HHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcC
Q 025393 152 ASSTLYVEGLP----ADST-------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 220 (253)
Q Consensus 152 ~~~tLfV~nLp----~~vt-------e~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG 220 (253)
..+||.|.||= +..+ +++|.+-.++||.|..|.|.... |.|.+-|.|.+.++|..||+.|+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h-------PdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH-------PDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC-------CCceeEEEeCChHHHHHHHHHhcC
Confidence 46789999973 2334 34566668899999999887443 347999999999999999999999
Q ss_pred ceeCCCCCCCccEEEEee
Q 025393 221 YRMDEDDPDSKFLRLQFS 238 (253)
Q Consensus 221 ~~i~g~~~~~r~L~V~~a 238 (253)
..|++ |.|..+..
T Consensus 337 R~fdg-----Rql~A~i~ 349 (382)
T KOG1548|consen 337 RWFDG-----RQLTASIW 349 (382)
T ss_pred eeecc-----eEEEEEEe
Confidence 99999 56766543
No 114
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.82 E-value=0.0038 Score=60.92 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=47.1
Q ss_pred HHHhhcCCCcEEEEEEeec-CCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEee
Q 025393 170 VAHIFRPFVGYKEVRLVIK-ESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 238 (253)
Q Consensus 170 L~~lF~~fG~i~~vrl~~~-~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~a 238 (253)
++.-+++||.|+.|.+... ...+. .-..|.-||+|.+.+++++|.++|+|.+|.+ |.+..+|-
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~-~~G~GkVFVefas~ed~qrA~~~L~GrKF~n-----RtVvtsYy 489 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENP-VPGTGKVFVEFADTEDSQRAMEELTGRKFAN-----RTVVASYY 489 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCc-CCCcccEEEEecChHHHHHHHHHccCceeCC-----cEEEEEec
Confidence 3344668999999988744 21111 1224789999999999999999999999998 66776664
No 115
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.79 E-value=0.0096 Score=44.76 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=42.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 219 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 219 (253)
....||. .|......||.++|+.||.| .|..+.+. -|||...+++.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT----------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT----------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT----------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC----------cEEEEeecHHHHHHHHHHhc
Confidence 3566676 99999999999999999987 45565453 59999999999999999886
No 116
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.63 E-value=0.018 Score=49.55 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=56.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
...|.|.+||..-++++|+++..+.|.|....+..+ |.+.|+|...|+.+-|++.|+..++.-
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----------cceeeeeeehhhHHHHHHhhccccccC
Confidence 367899999999999999999999999988877654 389999999999999999999888754
No 117
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.56 E-value=0.0016 Score=58.23 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=59.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCc-----cCCCccce----EEEEEeCCHHHHHHHHHHHcCcee
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK-----LRGGDPLI----LCFVDFENPACAATALSALQGYRM 223 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~-----~~gG~~kG----~aFVeF~~~~~A~~Al~~LnG~~i 223 (253)
.-.||+++||+.++...|++||++||.|-.|-|-+.... .+.|..+. =+.|||.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999999999988877644321 01111111 268999999999999999999999
Q ss_pred CCCC
Q 025393 224 DEDD 227 (253)
Q Consensus 224 ~g~~ 227 (253)
.+.+
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9864
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.48 E-value=0.0033 Score=59.10 Aligned_cols=69 Identities=20% Similarity=0.337 Sum_probs=56.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCc-EEE--EEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVG-YKE--VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~-i~~--vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
...|-+.+||+..+.++|.++|..|.. |+. |.++.+.. |++.|-|||+|.+.+.|..|....+.+....
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q----GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~ 351 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ----GRPSGEAFIQMRNAERARAAAQKCHKKLMKS 351 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC----CCcChhhhhhhhhhHHHHHHHHHHHHhhccc
Confidence 467889999999999999999998853 322 66665544 8888999999999999999998888777644
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.47 E-value=0.013 Score=55.21 Aligned_cols=60 Identities=32% Similarity=0.402 Sum_probs=48.0
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcC---C-CcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHH
Q 025393 154 STLYVEGLPADSTKREVAHIFRP---F-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 217 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~---f-G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 217 (253)
-.|-+.+||+++++.++.++|.+ . +....|.+++... |++.|=|||.|..+++|..||.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd----grpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD----GRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC----CCcccceEEEecCHHHHHHHHHH
Confidence 35667899999999999999963 2 3455666665533 78889999999999999999854
No 120
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.44 E-value=0.017 Score=44.81 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=50.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecC-------CccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE-------SKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~-------~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
.+.|.|-+.|.. ....|.+.|++||.|.+..-..+. .... + ..+-.|.|+++.+|.+|| .-||..|.+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~-~--~NWi~I~Y~~~~~A~rAL-~~NG~i~~g 80 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS-G--GNWIHITYDNPLSAQRAL-QKNGTIFSG 80 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-C-C--TTEEEEEESSHHHHHHHH-TTTTEEETT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCC-C--CCEEEEECCCHHHHHHHH-HhCCeEEcC
Confidence 456888888887 556678899999999887511000 0000 1 138999999999999999 569999988
Q ss_pred CCCCCccEEEEeec
Q 025393 226 DDPDSKFLRLQFSR 239 (253)
Q Consensus 226 ~~~~~r~L~V~~ak 239 (253)
.. -+-|.+.+
T Consensus 81 ~~----mvGV~~~~ 90 (100)
T PF05172_consen 81 SL----MVGVKPCD 90 (100)
T ss_dssp CE----EEEEEE-H
T ss_pred cE----EEEEEEcH
Confidence 52 35566653
No 121
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.24 E-value=0.019 Score=47.52 Aligned_cols=54 Identities=24% Similarity=0.403 Sum_probs=43.7
Q ss_pred HHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeec
Q 025393 169 EVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 239 (253)
Q Consensus 169 ~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~ak 239 (253)
+|.+.|++||+++=||++.. .-+|+|.+-+.|.+|+ .|+|.+|.+ +.|+|+...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-----------~mwVTF~dg~sALaal-s~dg~~v~g-----~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-----------TMWVTFRDGQSALAAL-SLDGIQVNG-----RTLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-----------CEEEEESSCHHHHHHH-HGCCSEETT-----EEEEEEE--
T ss_pred HHHHHHHhCCceEEEEEeCC-----------eEEEEECccHHHHHHH-ccCCcEECC-----EEEEEEeCC
Confidence 67788999999998888754 4799999999999998 799999998 468887543
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.21 E-value=0.0053 Score=61.49 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=61.9
Q ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025393 146 LPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 146 ~~~p~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
.+.|-.....|||..||..+++.++.++|...-.|++..++....+ ++.++.|||+|..++++.+|+..-+-+.+.
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~---~~~~~~afv~F~~~~a~~~a~~~~~k~y~G- 502 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPT---DLLRPAAFVAFIHPTAPLTASSVKTKFYPG- 502 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCc---ccccchhhheeccccccchhhhcccccccC-
Confidence 3455566789999999999999999999998777766433333222 666789999999999998887554444433
Q ss_pred CCCCCccEEEEe
Q 025393 226 DDPDSKFLRLQF 237 (253)
Q Consensus 226 ~~~~~r~L~V~~ 237 (253)
+ |.|+|.-
T Consensus 503 ~----r~irv~s 510 (944)
T KOG4307|consen 503 H----RIIRVDS 510 (944)
T ss_pred c----eEEEeec
Confidence 2 6788853
No 123
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.15 E-value=0.02 Score=40.61 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=44.6
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCC---CcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHH
Q 025393 154 STLYVEGLPADSTKREVAHIFRPF---VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 218 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~f---G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L 218 (253)
.+|+|.++. +++.++|+.+|..| .....|..+.+. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt----------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT----------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC----------cEEEEECCHHHHHHHHHcC
Confidence 689999995 58889999999988 234578888665 4899999999999999875
No 124
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.95 E-value=0.024 Score=48.20 Aligned_cols=88 Identities=11% Similarity=0.163 Sum_probs=55.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcC-CCcE---EEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRP-FVGY---KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~-fG~i---~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
..+|.|.+||+++||+++.+.++. ++.. ..+.-.......... .-.-|||.|.+.+++..-++.++|+.|.+...
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~-~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPP-TYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS---EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCC-cceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 468999999999999999998877 6655 334311111110001 12369999999999999999999999977654
Q ss_pred CCccEEEEeecCC
Q 025393 229 DSKFLRLQFSRNP 241 (253)
Q Consensus 229 ~~r~L~V~~ak~~ 241 (253)
...+..|+||-..
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 3345678888663
No 125
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.75 E-value=0.0046 Score=55.23 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=48.4
Q ss_pred HHHhhc-CCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeecC
Q 025393 170 VAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRN 240 (253)
Q Consensus 170 L~~lF~-~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~ak~ 240 (253)
|...|+ +||+|.++.|-.+... ..+|=.+|.|...++|++|++.||+..|.+ ++|..++..-
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl~~----hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G-----~pi~ae~~pv 147 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNLGD----HLVGNVYVKFRSEEDAEAALEDLNNRWYNG-----RPIHAELSPV 147 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcccch----hhhhhhhhhcccHHHHHHHHHHHcCccccC-----CcceeeecCc
Confidence 333344 8999999877655432 345679999999999999999999999998 5788887643
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.72 E-value=0.011 Score=52.94 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=54.7
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCce
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 222 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~ 222 (253)
..|||.||..-++.+.|..-|+.||.|....++.+.. +++-+=.+|+|...-.|.+|+..+.-.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r----~k~t~eg~v~~~~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR----GKPTREGIVEFAKKPNARKAARRCREGG 96 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc----ccccccchhhhhcchhHHHHHHHhccCc
Confidence 6799999999999999999999999997766554443 5666789999999999999998884333
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.66 E-value=0.00078 Score=68.41 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=56.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 224 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~ 224 (253)
..++||.||+..+.+++|...|..++.+..+++.-...+ ++.+|.|+|+|..++++.+|+.......+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~---~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNE---KRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhc---cccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 357999999999999999999999998887777622222 778899999999999999999766655544
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.64 E-value=0.011 Score=56.26 Aligned_cols=74 Identities=20% Similarity=0.242 Sum_probs=54.1
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 233 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 233 (253)
+.||++||.+.++..+|..+|...---.+-.++.+. ||+||++.+...|.+|++.|+|..-... +.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~---------gyafvd~pdq~wa~kaie~~sgk~elqG----kr~ 68 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS---------GYAFVDCPDQQWANKAIETLSGKVELQG----KRQ 68 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec---------ceeeccCCchhhhhhhHHhhchhhhhcC----cee
Confidence 579999999999999999999854110111122221 5999999999999999999998764443 357
Q ss_pred EEEeecC
Q 025393 234 RLQFSRN 240 (253)
Q Consensus 234 ~V~~ak~ 240 (253)
.|.++-.
T Consensus 69 e~~~sv~ 75 (584)
T KOG2193|consen 69 EVEHSVP 75 (584)
T ss_pred eccchhh
Confidence 7766644
No 129
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.58 E-value=0.3 Score=38.55 Aligned_cols=80 Identities=13% Similarity=0.233 Sum_probs=58.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCC-CcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~f-G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+..+.+...|..++.++|..+.+.+ ..|..++|+.+... .+-.+.+.|.+.+.|.+-.+.+||+.+..-++ -
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-----nrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp--E 85 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-----NRYMVLIKFRDQESADEFYEEFNGKPFNSLEP--E 85 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-----ceEEEEEEECCHHHHHHHHHHhCCCccCCCCC--c
Confidence 3445556666677778888777777 45667888866432 35689999999999999999999999976554 3
Q ss_pred cEEEEeec
Q 025393 232 FLRLQFSR 239 (253)
Q Consensus 232 ~L~V~~ak 239 (253)
..+|-|.+
T Consensus 86 ~ChvvfV~ 93 (110)
T PF07576_consen 86 TCHVVFVK 93 (110)
T ss_pred eeEEEEEE
Confidence 35555544
No 130
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.36 E-value=0.045 Score=50.07 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=49.1
Q ss_pred HHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEee
Q 025393 167 KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 238 (253)
Q Consensus 167 e~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~a 238 (253)
++++.+-+++||.|..|.|.....-. -+-..--||+|+..++|.+|+-.|||..|.+ |.++..|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p--~deavRiFveF~r~e~aiKA~VdlnGRyFGG-----r~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQP--EDEAVRIFVEFERVESAIKAVVDLNGRYFGG-----RVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCc--cchhheeeeeeccHHHHHHHHHhcCCceecc-----eeeeheec
Confidence 44678889999999998877443210 1112358999999999999999999999998 56666654
No 131
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.28 E-value=0.0099 Score=60.68 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=61.7
Q ss_pred EEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEE
Q 025393 156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 235 (253)
Q Consensus 156 LfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V 235 (253)
.++.|.+-+.+..-|..+|++||.|.+.+.+.+.. .|.|+|.+.+.|..|+++|+|+++.... .+.+|
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N---------~alvs~~s~~sai~a~dAl~gkevs~~g---~Ps~V 368 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN---------MALVSFSSVESAILALDALQGKEVSVTG---APSRV 368 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc---------chhhhhHHHHHHHHhhhhhcCCcccccC---CceeE
Confidence 34555566778889999999999999999876653 6999999999999999999999987643 57899
Q ss_pred EeecC
Q 025393 236 QFSRN 240 (253)
Q Consensus 236 ~~ak~ 240 (253)
.|||.
T Consensus 369 ~~ak~ 373 (1007)
T KOG4574|consen 369 SFAKT 373 (1007)
T ss_pred Eeccc
Confidence 99986
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.86 E-value=0.0058 Score=62.66 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=64.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
.+.|||++||+..+++.+|+..|..+|.|.+|.|-...- +.---|+||.|.+...+-.|+..+.+..|...
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~----~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g----- 441 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI----KTESAYAFVSLLNTDMTPSAKFEESGPLIGNG----- 441 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC----CcccchhhhhhhccccCcccchhhcCCccccC-----
Confidence 578999999999999999999999999999998875432 12224899999999999999999999888764
Q ss_pred cEEEEee
Q 025393 232 FLRLQFS 238 (253)
Q Consensus 232 ~L~V~~a 238 (253)
.+++-+.
T Consensus 442 ~~r~glG 448 (975)
T KOG0112|consen 442 THRIGLG 448 (975)
T ss_pred ccccccc
Confidence 3555554
No 133
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.56 E-value=0.064 Score=46.05 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=45.8
Q ss_pred CHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHc--CceeCCCCCCCccEEEEeecCC
Q 025393 166 TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDPDSKFLRLQFSRNP 241 (253)
Q Consensus 166 te~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln--G~~i~g~~~~~r~L~V~~ak~~ 241 (253)
..+.|+++|..++.+.++..++.-. -..|.|.+.+.|.+|...|+ ++.+.+. .|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr---------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~-----~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR---------RIRVVFESPESAQRARQLLHWDGTSFNGK-----RLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT---------EEEEE-SSTTHHHHHHHTST--TSEETTE-----E-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC---------EEEEEeCCHHHHHHHHHHhcccccccCCC-----ceEEEEcccc
Confidence 4578999999999999888876553 48999999999999999999 9999984 5999998543
No 134
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.37 E-value=0.13 Score=50.61 Aligned_cols=64 Identities=14% Similarity=0.262 Sum_probs=53.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhc--CCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHH-------HHcCce
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFR--PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALS-------ALQGYR 222 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~--~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~-------~LnG~~ 222 (253)
..++|.+.-||..+-+|+++.||. .|-.+++|.+..+.. -||+|++.++|..|.+ .++|+.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n----------WyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN----------WYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc----------eEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 456788899999999999999997 478899999887662 8999999999999975 456777
Q ss_pred eCC
Q 025393 223 MDE 225 (253)
Q Consensus 223 i~g 225 (253)
|+.
T Consensus 244 ImA 246 (684)
T KOG2591|consen 244 IMA 246 (684)
T ss_pred hhh
Confidence 765
No 135
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.12 E-value=0.027 Score=52.14 Aligned_cols=82 Identities=17% Similarity=0.328 Sum_probs=59.9
Q ss_pred CCEEEEeCCCCCCCHHH-HH--HhhcCCCcEEEEEEeecCC--ccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025393 153 SSTLYVEGLPADSTKRE-VA--HIFRPFVGYKEVRLVIKES--KLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 227 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~-L~--~lF~~fG~i~~vrl~~~~~--~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 227 (253)
.+-+||-+|+..+..++ |+ +.|.+||.|..|.+..+.. ... +-.. -++|+|+..++|..||...+|..+++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~-~~~~-s~yITy~~~eda~rci~~v~g~~~dg-- 152 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSS-GGTC-SVYITYEEEEDADRCIDDVDGFVDDG-- 152 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCC-CCCC-cccccccchHhhhhHHHHhhhHHhhh--
Confidence 35689999998865554 43 6789999999888775441 111 1111 28999999999999999999999988
Q ss_pred CCCccEEEEeecCC
Q 025393 228 PDSKFLRLQFSRNP 241 (253)
Q Consensus 228 ~~~r~L~V~~ak~~ 241 (253)
+.|+..+...+
T Consensus 153 ---~~lka~~gttk 163 (327)
T KOG2068|consen 153 ---RALKASLGTTK 163 (327)
T ss_pred ---hhhHHhhCCCc
Confidence 45777766543
No 136
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.01 E-value=0.24 Score=41.02 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=53.1
Q ss_pred CCEEEEeCCCCCCC-HHH---HHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025393 153 SSTLYVEGLPADST-KRE---VAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 153 ~~tLfV~nLp~~vt-e~~---L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
-.||.|.-|..++. .++ +...++.||+|.+|.+.-.. -|.|.|.+..+|-+|+.+++-... +
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq----------savVvF~d~~SAC~Av~Af~s~~p-g--- 151 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ----------SAVVVFKDITSACKAVSAFQSRAP-G--- 151 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc----------eEEEEehhhHHHHHHHHhhcCCCC-C---
Confidence 47899988887764 333 44556789999999876332 599999999999999999987543 3
Q ss_pred CCccEEEEeec
Q 025393 229 DSKFLRLQFSR 239 (253)
Q Consensus 229 ~~r~L~V~~ak 239 (253)
.-++.+|..
T Consensus 152 --tm~qCsWqq 160 (166)
T PF15023_consen 152 --TMFQCSWQQ 160 (166)
T ss_pred --ceEEeeccc
Confidence 247777753
No 137
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.60 E-value=0.22 Score=49.87 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=54.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 227 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 227 (253)
..++||+|+...+..+-++.+...+|-|..++.+. |+|.+|.....+..|+..|+-..++++.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------------fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------------FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------------hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 58999999999999999999999999877654331 8999999999999999999988887753
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.55 E-value=0.18 Score=49.52 Aligned_cols=86 Identities=15% Similarity=0.275 Sum_probs=56.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcC----------------------------CCcEEEEEEeecCCccCCCccceEEEEE
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRP----------------------------FVGYKEVRLVIKESKLRGGDPLILCFVD 204 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~----------------------------fG~i~~vrl~~~~~~~~gG~~kG~aFVe 204 (253)
..++-|.|||..-+..+|..|... .+...-+.++.+-.. -...|||||.
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~n---kcNvGYAFIN 437 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKN---KCNVGYAFIN 437 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEecccccc---ccccceeEEe
Confidence 345667777766666666655542 233333334322211 2346899999
Q ss_pred eCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeecCCC
Q 025393 205 FENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNPG 242 (253)
Q Consensus 205 F~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~ak~~~ 242 (253)
|.+++++..+.+++||++.+.=. ..+.+.|.||+..+
T Consensus 438 m~sp~ai~~F~kAFnGk~W~~Fn-S~Kia~itYArIQG 474 (549)
T KOG4660|consen 438 MTSPEAIIRFYKAFNGKKWEKFN-SEKIASITYARIQG 474 (549)
T ss_pred ecCHHHHHHHHHHHcCCchhhhc-ceeeeeeehhhhhc
Confidence 99999999999999999876533 23578999998643
No 139
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.52 E-value=0.7 Score=45.90 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=62.4
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHhhcCC----CcEEEEEEeecCCc-------cCCCc-----------------------
Q 025393 152 ASSTLYVEGLPAD-STKREVAHIFRPF----VGYKEVRLVIKESK-------LRGGD----------------------- 196 (253)
Q Consensus 152 ~~~tLfV~nLp~~-vte~~L~~lF~~f----G~i~~vrl~~~~~~-------~~gG~----------------------- 196 (253)
.++.|-|-||.|+ +..++|..+|+.| |.|.+|.|.+..-. +..|-
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4688999999997 8899999999977 57888887643210 00011
Q ss_pred --------------cceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEee
Q 025393 197 --------------PLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 238 (253)
Q Consensus 197 --------------~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~a 238 (253)
---||.|+|.+.+.|.+....++|..+.... ..|-+.|-
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~---~~~DLRFI 305 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA---NKLDLRFI 305 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc---ceeeeeec
Confidence 1257999999999999999999999998753 24555553
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.51 E-value=1.1 Score=32.39 Aligned_cols=66 Identities=20% Similarity=0.357 Sum_probs=39.0
Q ss_pred EEEEeCC--CCCCCHHHHHHhhcCCCcE-----EEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025393 155 TLYVEGL--PADSTKREVAHIFRPFVGY-----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 227 (253)
Q Consensus 155 tLfV~nL--p~~vte~~L~~lF~~fG~i-----~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 227 (253)
+||| |+ -..++..+|..++.....| -.|++..+ |+||+-.. +.|+.+++.|++..+.+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~-~~a~~v~~~l~~~~~~g-- 66 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPE-EVAEKVLEALNGKKIKG-- 66 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-T-T-HHHHHHHHTT--SSS--
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECH-HHHHHHHHHhcCCCCCC--
Confidence 4666 33 2458889999999877554 35555433 89999876 68999999999999998
Q ss_pred CCCccEEEEee
Q 025393 228 PDSKFLRLQFS 238 (253)
Q Consensus 228 ~~~r~L~V~~a 238 (253)
+.|+|+.|
T Consensus 67 ---k~v~ve~A 74 (74)
T PF03880_consen 67 ---KKVRVERA 74 (74)
T ss_dssp -------EEE-
T ss_pred ---eeEEEEEC
Confidence 56888754
No 141
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.31 E-value=0.15 Score=49.33 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=57.8
Q ss_pred CCEEEEeCCCCCC-CHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 153 SSTLYVEGLPADS-TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLfV~nLp~~v-te~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
.+.|-+.-.|+.. +.++|...|.+||.|..|.+-.... -|.|+|.+..+|-+|. +.++..|+. |
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~---------~a~vTF~t~aeag~a~-~s~~avlnn-----r 436 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL---------HAVVTFKTRAEAGEAY-ASHGAVLNN-----R 436 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh---------hheeeeeccccccchh-ccccceecC-----c
Confidence 3556666666654 5778999999999999998865522 4999999999997775 678999988 6
Q ss_pred cEEEEeecC
Q 025393 232 FLRLQFSRN 240 (253)
Q Consensus 232 ~L~V~~ak~ 240 (253)
.|+|-|-+.
T Consensus 437 ~iKl~whnp 445 (526)
T KOG2135|consen 437 FIKLFWHNP 445 (526)
T ss_pred eeEEEEecC
Confidence 799999876
No 142
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=88.66 E-value=0.25 Score=45.18 Aligned_cols=71 Identities=18% Similarity=0.030 Sum_probs=57.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
...++||+++.+++.+.++..+|...|......+...... ..+++++.|.|...+.+..|+.....+.+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~---~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~ 157 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDS---LSSKGGLSVHFAGKSQFFAALEESGSKVLDG 157 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccc---cccccceeeccccHHHHHHHHHhhhcccccc
Confidence 3578999999999999999999999998887777654332 6678999999999999999996555445544
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.01 E-value=2.6 Score=40.85 Aligned_cols=71 Identities=20% Similarity=0.342 Sum_probs=60.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCC-CcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~f-G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
+++|+|--+|..++-.||..+...| -.|.+++++.+..- .+-..+|.|.+.++|..=.+.+||..|..-++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-----nrymvLIkFr~q~da~~Fy~efNGk~Fn~le~ 145 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-----NRYMVLIKFRDQADADTFYEEFNGKQFNSLEP 145 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-----ceEEEEEEeccchhHHHHHHHcCCCcCCCCCc
Confidence 6899999999999999999998866 56788999875432 23579999999999999999999999977654
No 144
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=82.89 E-value=5.3 Score=28.60 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=39.9
Q ss_pred CCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025393 164 DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 164 ~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
.++-++|+..+.+|.- .. |..+++ | =||.|.+..+|++|.+..+|..+..
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~t--------G-fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDRT--------G-FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecCC--------E-EEEEECChHHHHHHHHhcCCCEEEE
Confidence 4788899999999963 33 334443 2 6899999999999999999999876
No 145
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.27 E-value=2 Score=39.62 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=44.5
Q ss_pred EEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025393 156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 226 (253)
Q Consensus 156 LfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~ 226 (253)
|-|-+.|.. .-.-|..+|++||+|+..... .+ | -+-.|.|.++.+|.+||. -||+.|++.
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~-~n-----g---NwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP-SN-----G---NWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecC-CC-----C---ceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 344566654 345677899999999776554 21 2 289999999999999994 588888874
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=73.67 E-value=0.67 Score=44.09 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=52.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
..||+|.+|+..+...++-++|..+|+|...++..+... -+|-|+|........|+ .++|..+.-
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s-------~~c~~sf~~qts~~hal-r~~gre~k~ 215 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRS-------SSCSHSFRKQTSSKHAL-RSHGRERKR 215 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCC-------cchhhhHhhhhhHHHHH-Hhcchhhhh
Confidence 478999999999999999999999999988777654432 37889999888888887 456666554
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=69.99 E-value=0.21 Score=47.87 Aligned_cols=77 Identities=12% Similarity=0.243 Sum_probs=62.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
.++.+-|.|+|....++.|..|..+||.+..|..+.....+ -.--|+|.+.+.+..||..|||..+...
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et------avvnvty~~~~~~~~ai~kl~g~Q~en~----- 147 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET------AVVNVTYSAQQQHRQAIHKLNGPQLENQ----- 147 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH------HHHHHHHHHHHHHHHHHHhhcchHhhhh-----
Confidence 35779999999999999999999999999888776443321 1345789999999999999999999885
Q ss_pred cEEEEeec
Q 025393 232 FLRLQFSR 239 (253)
Q Consensus 232 ~L~V~~ak 239 (253)
.++|.|--
T Consensus 148 ~~k~~YiP 155 (584)
T KOG2193|consen 148 HLKVGYIP 155 (584)
T ss_pred hhhcccCc
Confidence 48887753
No 148
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=67.99 E-value=14 Score=35.77 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=57.9
Q ss_pred CCCCEEEEeCCCCC-CCHHHHHHhhcCC----CcEEEEEEeecCC-c------cCCC-----------------------
Q 025393 151 DASSTLYVEGLPAD-STKREVAHIFRPF----VGYKEVRLVIKES-K------LRGG----------------------- 195 (253)
Q Consensus 151 ~~~~tLfV~nLp~~-vte~~L~~lF~~f----G~i~~vrl~~~~~-~------~~gG----------------------- 195 (253)
++++.|-|-||.|+ +...+|..+|+.| |.|..|.|.+..- + |-.|
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 45688999999997 8888999999866 5566666543211 0 0000
Q ss_pred ---cc-----------------------------ceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEee
Q 025393 196 ---DP-----------------------------LILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 238 (253)
Q Consensus 196 ---~~-----------------------------kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~a 238 (253)
+. --||.|++++.+.+.....+++|..+...- ..+-|.|.
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~sa---n~~DLRfv 295 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSA---NVLDLRFV 295 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccccc---ceeeeeec
Confidence 00 237899999999999999999999887642 24555553
No 149
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=66.15 E-value=4.4 Score=34.82 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=53.1
Q ss_pred CEEEEeCCCCCCC-H----HHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025393 154 STLYVEGLPADST-K----REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 154 ~tLfV~nLp~~vt-e----~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
+++++.+++.++- + .....+|.+|-+....+++... ++--|.|.+++.|+.|...++.+.|.+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf---------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~- 80 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF---------RRVRINFSNPEAAADARIKLHSTSFNGKN- 80 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh---------ceeEEeccChhHHHHHHHHhhhcccCCCc-
Confidence 5688888887642 2 2344667776665555554332 35778999999999999999999999863
Q ss_pred CCccEEEEeecC
Q 025393 229 DSKFLRLQFSRN 240 (253)
Q Consensus 229 ~~r~L~V~~ak~ 240 (253)
.|+.-|+..
T Consensus 81 ---~~k~yfaQ~ 89 (193)
T KOG4019|consen 81 ---ELKLYFAQP 89 (193)
T ss_pred ---eEEEEEccC
Confidence 477777765
No 150
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=56.48 E-value=2.7 Score=37.24 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=56.0
Q ss_pred CEEEEeC----CCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025393 154 STLYVEG----LPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 154 ~tLfV~n----Lp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
.+++.|+ |...++++.+.+.|++-+.+..+++..... |+++-+.||++.-....-.++...++.....
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d----~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND----GRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc----CCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 5788888 888899999999999999999999886654 6677799999988777777887777766554
No 151
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=54.08 E-value=12 Score=29.55 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=26.9
Q ss_pred EEEEeCCCCC---------CCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHH
Q 025393 155 TLYVEGLPAD---------STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPAC 210 (253)
Q Consensus 155 tLfV~nLp~~---------vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~ 210 (253)
++.|-|++.. ++.++|.+.|+.|..++ |+.+..+.. ..|+++|+|...-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~g-----h~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQG-----HTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTE-----EEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCC-----CcEEEEEEECCChH
Confidence 5667777543 35678999999998764 555555543 34799999987443
No 152
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=53.82 E-value=19 Score=30.00 Aligned_cols=63 Identities=25% Similarity=0.267 Sum_probs=43.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHH
Q 025393 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 217 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 217 (253)
....+++.+++..+++.++..+|..++.+..+.+...... .....+.++.+.....+..++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 224 KSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDG---KIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred ccceeeccccccccchhHHHHhccccccceeeeccCCCCC---cccccccccchhHHHhhhhhhcc
Confidence 4678999999999999999999999999977777654432 22333444555544444444443
No 153
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=52.99 E-value=8.9 Score=35.25 Aligned_cols=93 Identities=20% Similarity=0.393 Sum_probs=55.1
Q ss_pred CCCCCCEEEEeCCCCC------------CCHHHHHHhhcCCCcEEEEEEeecCC--ccCCCc-----cceEE--------
Q 025393 149 PPDASSTLYVEGLPAD------------STKREVAHIFRPFVGYKEVRLVIKES--KLRGGD-----PLILC-------- 201 (253)
Q Consensus 149 p~~~~~tLfV~nLp~~------------vte~~L~~lF~~fG~i~~vrl~~~~~--~~~gG~-----~kG~a-------- 201 (253)
|..-..|||+.+||-. -+++-|+..|+.||.|..|.|+--.. ....|+ .+||+
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffe 224 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFE 224 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHH
Confidence 3333468888888731 46778999999999999988762211 011133 23443
Q ss_pred -EEEeCCHHHHHHHHHHHcCceeCCCCCCC---ccEEEEeecCC
Q 025393 202 -FVDFENPACAATALSALQGYRMDEDDPDS---KFLRLQFSRNP 241 (253)
Q Consensus 202 -FVeF~~~~~A~~Al~~LnG~~i~g~~~~~---r~L~V~~ak~~ 241 (253)
||+|-.-..-..|+.+|.|.++.-.--++ ..++|.|.++.
T Consensus 225 ayvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 225 AYVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 35555555566778888776653210000 14677777664
No 154
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.81 E-value=17 Score=34.93 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=41.5
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcE-EEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHH
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGY-KEVRLVIKESKLRGGDPLILCFVDFENPACAATALS 216 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i-~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~ 216 (253)
..|=|.++|.....++|..+|+.|++- -.|+.+.+. .+|-.|.+...|..||-
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt----------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT----------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc----------eeEEeecchHHHHHHhh
Confidence 578899999999899999999999642 234444332 59999999999999984
No 155
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=46.61 E-value=3.3 Score=41.12 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=54.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 226 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~ 226 (253)
.++|||.|++++++-.+|..++..+-.+..+-+-....- -+-.-+..|.|.---.-..|+.+||+..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~ae---k~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAE---KNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHH---HHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 467999999999999999999999877776655432210 01123688999988888889999999988764
No 156
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=41.58 E-value=27 Score=32.26 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=34.8
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHH
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPA 209 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~ 209 (253)
.-|||+||+.++.-.+|+..+.+-+.+ -.+|..+- +.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg-------~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKG-------HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeeec-------CCcceeEecCCcc
Confidence 459999999999999999988876543 23343332 1246999998854
No 157
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=36.96 E-value=44 Score=31.85 Aligned_cols=73 Identities=18% Similarity=0.318 Sum_probs=49.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEE-EEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 226 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~v-rl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~ 226 (253)
-..+.|.+||...++++|.+-..+|-.-.+- .+.+...... -...+.++|.|...++...=...++|+.+...
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~-~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLR-NHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccch-hhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 3578899999999999988877776432222 2221111100 11245799999999998888888999988764
No 158
>COG4907 Predicted membrane protein [Function unknown]
Probab=36.68 E-value=31 Score=33.93 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=12.0
Q ss_pred CCCC--CccccchhHHhhhhc
Q 025393 55 PLKD--TSTIGSAYDRYLQSA 73 (253)
Q Consensus 55 ~~~~--~~~~~~~~dr~~~~~ 73 (253)
.++| .-.++.+|||...+-
T Consensus 540 ~ikds~~~i~h~nysr~~~~~ 560 (595)
T COG4907 540 IIKDSYSPIFHNNYSRSFNNL 560 (595)
T ss_pred HhcccceeEEecchhhhhccc
Confidence 4455 335677889985553
No 159
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=34.58 E-value=79 Score=22.43 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=15.3
Q ss_pred HHHHHhhcCCCcEEEEEEe
Q 025393 168 REVAHIFRPFVGYKEVRLV 186 (253)
Q Consensus 168 ~~L~~lF~~fG~i~~vrl~ 186 (253)
.+|+++|++.|.|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998765554
No 160
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=34.45 E-value=1.4e+02 Score=19.81 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=39.4
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCH----HHHHHHHHH
Q 025393 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP----ACAATALSA 217 (253)
Q Consensus 155 tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~----~~A~~Al~~ 217 (253)
||.|.||.-.--...|+..+...-+|.++.+-.... -.-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~---------~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETK---------TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTT---------EEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCC---------EEEEEEecCCCCHHHHHHHHHH
Confidence 577888877667788999999998999998865542 578888754 445555544
No 161
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=30.22 E-value=35 Score=25.79 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=19.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFR 175 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~ 175 (253)
.++|-|.|||..+++++|++..+
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 47899999999999999997643
No 162
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.87 E-value=9.7 Score=37.03 Aligned_cols=78 Identities=10% Similarity=-0.114 Sum_probs=57.7
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 233 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 233 (253)
...|+..||...+++++.-+|..|+-|..+.+..... +|-.+..+||.-.. +.|..||+.+.-..+.+. .+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~---~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~-----~~ 74 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVN---GSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFES-----QD 74 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCcccc---CCcceeeeeeeeec-cCcccccCHHHHhhhhhh-----hh
Confidence 3467788999999999999999999888777665543 35667789988665 667778777766666663 47
Q ss_pred EEEeecC
Q 025393 234 RLQFSRN 240 (253)
Q Consensus 234 ~V~~ak~ 240 (253)
++..++.
T Consensus 75 r~~~~~~ 81 (572)
T KOG4365|consen 75 RKAVSPS 81 (572)
T ss_pred hhhcCch
Confidence 7777654
No 163
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.87 E-value=33 Score=30.76 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=27.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEE
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVR 184 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vr 184 (253)
..+||+-|+|..+|++.|.++.+++|-+..+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 47899999999999999999999998655443
No 164
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=28.36 E-value=81 Score=29.20 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=56.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCC----ccCCCccceEEEEEeCCHHHHHHH----HHHHcCceeC
Q 025393 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES----KLRGGDPLILCFVDFENPACAATA----LSALQGYRMD 224 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~----~~~gG~~kG~aFVeF~~~~~A~~A----l~~LnG~~i~ 224 (253)
++.|...||..+++-..+...|-+||.|.+|.++.+.. ....-+..-.+.+-|-+++.+..- ++.|...+-.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 35688899999999999999999999999999996550 000012234788999988775432 3333332221
Q ss_pred CCCCCCccEEEEeec
Q 025393 225 EDDPDSKFLRLQFSR 239 (253)
Q Consensus 225 g~~~~~r~L~V~~ak 239 (253)
= ++..|+|+|..
T Consensus 95 L---~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 L---KSESLTLSFVS 106 (309)
T ss_pred c---CCcceeEEEEE
Confidence 1 22468888876
No 165
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=28.08 E-value=37 Score=21.45 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=10.5
Q ss_pred CCCCHHHHHHhhcCCC
Q 025393 163 ADSTKREVAHIFRPFV 178 (253)
Q Consensus 163 ~~vte~~L~~lF~~fG 178 (253)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4689999999999764
No 166
>PF14893 PNMA: PNMA
Probab=28.03 E-value=47 Score=31.19 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=19.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhc
Q 025393 153 SSTLYVEGLPADSTKREVAHIFR 175 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~ 175 (253)
-+.|.|.+||.+|++++|++.+.
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHH
Confidence 46799999999999999887765
No 167
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=28.03 E-value=1.7e+02 Score=29.77 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=49.6
Q ss_pred CEEEEe-CCCCCCCHHHHHHhhcCCCcEE-----EEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025393 154 STLYVE-GLPADSTKREVAHIFRPFVGYK-----EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 227 (253)
Q Consensus 154 ~tLfV~-nLp~~vte~~L~~lF~~fG~i~-----~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 227 (253)
.++||. +=-..++..+|..++..-+.|. .|+|..+ |.||+-.. +.|...++.|++..+.+
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~-----------~s~v~~~~-~~~~~~~~~~~~~~~~~-- 552 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS-----------HSTIELPK-GMPGEVLQHFTRTRILN-- 552 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC-----------ceEEEcCh-hhHHHHHHHhccccccC--
Confidence 456662 2234588999998888766553 3444422 89999875 66888999999999988
Q ss_pred CCCccEEEEeec
Q 025393 228 PDSKFLRLQFSR 239 (253)
Q Consensus 228 ~~~r~L~V~~ak 239 (253)
+.|.|+.++
T Consensus 553 ---~~~~~~~~~ 561 (629)
T PRK11634 553 ---KPMNMQLLG 561 (629)
T ss_pred ---CceEEEECC
Confidence 468888875
No 168
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=27.79 E-value=1e+02 Score=24.78 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=27.3
Q ss_pred CCCHHHHHHhhcCC-Cc-EEEEEEeecCCccCCCccceEEEEEeCCHHHHH
Q 025393 164 DSTKREVAHIFRPF-VG-YKEVRLVIKESKLRGGDPLILCFVDFENPACAA 212 (253)
Q Consensus 164 ~vte~~L~~lF~~f-G~-i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~ 212 (253)
+++.+||++-.++. -. -..|.++.-+++.-+|++.|||.| |++.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 56777777655532 11 122333333334456889999998 56655544
No 169
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=22.65 E-value=27 Score=24.85 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=27.1
Q ss_pred HHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025393 168 REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 219 (253)
Q Consensus 168 ~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 219 (253)
++|++.|..+..+..+ +. -.+|.-|.+.++|..++.++.
T Consensus 27 ~~v~~~~~~~~~f~k~--vk-----------L~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKI--VK-----------LKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhh--hh-----------hhhccCCCCHHHHHHHHHHhh
Confidence 6788888766544322 11 158999999999988887764
No 170
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.08 E-value=1.7e+02 Score=21.80 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=29.0
Q ss_pred cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEee
Q 025393 179 GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 238 (253)
Q Consensus 179 ~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~a 238 (253)
.|.+|++..-... |+.++||=|+|++ +-.+++.+|.+.+ ..|.|++-
T Consensus 2 ~itdVri~~~~~~---~~lka~asV~~dd-------~f~I~~ikVieg~---~GlFVaMP 48 (84)
T PF04026_consen 2 KITDVRIRKIEPE---GKLKAFASVTFDD-------CFVIHDIKVIEGE---KGLFVAMP 48 (84)
T ss_dssp -EEEEEEEETTSS---SSEEEEEEEEETT-------TEEEEEEEEEEET---TEEEEE--
T ss_pred ccEEEEEEEecCC---CCEEEEEEEEECC-------EEEEEeEEEEECC---CCcEEECC
Confidence 3678888765543 8899999999987 2245655554432 24555543
No 171
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=21.95 E-value=1.1e+02 Score=31.93 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=30.0
Q ss_pred cceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeecCC
Q 025393 197 PLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNP 241 (253)
Q Consensus 197 ~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~ak~~ 241 (253)
..+.|||+|.+...|..|.+..+...... ..+++|-.|
T Consensus 304 ~~~~aFVtf~sr~~A~~~aq~~~~~~~~~-------w~~~~APeP 341 (728)
T KOG1134|consen 304 PLPAAFVTFKSRYGAAVAAQTQQSLNPTK-------WLTEFAPEP 341 (728)
T ss_pred CCceEEEEEEeeHHHHHHHHhhhcCCCCc-------eEEEecCCc
Confidence 34699999999999999998766555543 788888665
No 172
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.72 E-value=2.1e+02 Score=21.29 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=37.0
Q ss_pred EEeCCCCCCCHHHHHHhhcCC--CcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHH
Q 025393 157 YVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 218 (253)
Q Consensus 157 fV~nLp~~vte~~L~~lF~~f--G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L 218 (253)
|+--++.+.+..+|+..++.+ -.|..|..+.... +. ==|||.+.....|......|
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~----~~--KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK----GE--KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC----Cc--EEEEEEeCCCCcHHHHHHhh
Confidence 444567789999988888764 3566666553332 11 13999999988887765443
No 173
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.68 E-value=2.3e+02 Score=20.77 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=36.9
Q ss_pred EEEeCCCCCCCHHHHHHhhcCC--CcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHH
Q 025393 156 LYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 217 (253)
Q Consensus 156 LfV~nLp~~vte~~L~~lF~~f--G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 217 (253)
-|+-.++.+.+..+|++.++++ -.|..|........ -+ =|||.+..-+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~---~K---KA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG---EK---KAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---ce---EEEEEECCCCcHHHHHHh
Confidence 4566678899999999887764 35566655533321 01 399999887777765443
No 174
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=21.67 E-value=10 Score=34.40 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCCCccccccccccccccCCCCCCCccccchhHHhhhhcCCcccCCCCcCCCCCCcccCCCCCCCCCCCC
Q 025393 25 SDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPV 104 (253)
Q Consensus 25 ~~~~~~~~g~~~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~dr~~~~~~~~~~~~g~~~~~gg~G~~r~~~gg~~g~~~ 104 (253)
-||-|+- -+.++||++-++.-.|+ .|++|..+|||-+. |..++++|...+.-+.+ ++.++| -.|.|-.+
T Consensus 189 ~DfRIfc--gdlgNevnd~vl~raf~-Kfpsf~~akviRdk--RTgKSkgygfVSf~~pa-----d~~rAm-rem~gkyV 257 (290)
T KOG0226|consen 189 DDFRIFC--GDLGNEVNDDVLARAFK-KFPSFQKAKVIRDK--RTGKSKGYGFVSFRDPA-----DYVRAM-REMNGKYV 257 (290)
T ss_pred ccceeec--ccccccccHHHHHHHHH-hccchhhccccccc--cccccccceeeeecCHH-----HHHHHH-Hhhccccc
Confidence 3555543 23577776665544443 58999999999977 77888877533332222 345777 78888777
Q ss_pred CCCcc
Q 025393 105 SDPSV 109 (253)
Q Consensus 105 ~~~~~ 109 (253)
++++.
T Consensus 258 gsrpi 262 (290)
T KOG0226|consen 258 GSRPI 262 (290)
T ss_pred ccchh
Confidence 66543
No 175
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.55 E-value=1.2e+02 Score=27.47 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=24.9
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEe
Q 025393 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~ 186 (253)
....|+|||++++..-|.+++...-.+....++
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 356799999999999999999876554343333
No 176
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=21.47 E-value=4.5e+02 Score=21.42 Aligned_cols=38 Identities=16% Similarity=0.049 Sum_probs=29.1
Q ss_pred EEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeecCCCC
Q 025393 200 LCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNPGP 243 (253)
Q Consensus 200 ~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~ak~~~~ 243 (253)
-|+.-|.+-+.|-.|...|-|..+.. -+.|+=...++.
T Consensus 115 raifm~kdge~a~e~k~fll~qd~~a------dvtiegq~f~g~ 152 (164)
T KOG4357|consen 115 RAIFMFKDGEQAFEAKDFLLGQDFCA------DVTIEGQSFDGK 152 (164)
T ss_pred eEEEEEeChhHHHHHHHHhhccchhe------eeeecceeccCC
Confidence 38888999999999999998888775 255555555544
No 177
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=20.05 E-value=1.7e+02 Score=22.37 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=30.4
Q ss_pred cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeec
Q 025393 179 GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 239 (253)
Q Consensus 179 ~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~ak 239 (253)
+|.+|++.+-... |+.|+||=|+|++ + -..++.++.+.+ ..|.|..-.
T Consensus 2 ~ITdVri~~~~~~---g~lka~asit~dd------~-fvI~~ikVieg~---~GlFVaMPs 49 (94)
T PRK13259 2 EVTDVRLRKVNTE---GRMKAIVSITFDN------E-FVVHDIRVIEGN---NGLFIAMPS 49 (94)
T ss_pred eEEEEEEEEeCCC---CcEEEEEEEEECC------E-EEEeeeEEEECC---CCeEEECcC
Confidence 3677777655432 8899999999998 1 245665654433 246665543
Done!