Query 025395
Match_columns 253
No_of_seqs 201 out of 1575
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01910 Wali7 This domain is p 100.0 1.7E-57 3.6E-62 392.9 23.7 224 2-226 1-224 (224)
2 PF12481 DUF3700: Aluminium in 100.0 4.9E-53 1.1E-57 359.6 20.0 225 2-226 1-228 (228)
3 PLN02549 asparagine synthase ( 100.0 5.5E-43 1.2E-47 341.6 22.9 201 25-233 17-237 (578)
4 PRK09431 asnB asparagine synth 100.0 1.1E-42 2.4E-47 338.5 21.8 200 26-233 18-239 (554)
5 PTZ00077 asparagine synthetase 100.0 2.4E-42 5.1E-47 337.8 22.7 201 26-233 18-249 (586)
6 KOG0571 Asparagine synthase (g 100.0 3.4E-41 7.4E-46 309.5 11.3 204 23-233 14-237 (543)
7 COG0367 AsnB Asparagine syntha 100.0 7.4E-40 1.6E-44 317.9 18.6 198 26-233 17-242 (542)
8 TIGR03104 trio_amidotrans aspa 100.0 1.4E-37 3.1E-42 305.1 20.9 201 25-233 16-272 (589)
9 cd00712 AsnB Glutamine amidotr 100.0 5.4E-37 1.2E-41 266.5 21.1 170 25-202 15-220 (220)
10 TIGR01536 asn_synth_AEB aspara 100.0 2.4E-37 5.3E-42 295.8 20.4 199 26-233 15-265 (467)
11 TIGR03108 eps_aminotran_1 exos 100.0 4.2E-36 9.1E-41 296.7 19.0 202 25-233 17-270 (628)
12 PRK08525 amidophosphoribosyltr 100.0 7.9E-33 1.7E-37 263.2 21.9 173 26-200 14-228 (445)
13 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 2.5E-33 5.5E-38 237.5 14.8 153 26-188 18-178 (181)
14 PRK07631 amidophosphoribosyltr 100.0 1.5E-32 3.3E-37 262.1 20.9 173 26-201 24-236 (475)
15 cd00714 GFAT Glutamine amidotr 100.0 1.6E-32 3.6E-37 238.2 19.0 162 26-192 13-214 (215)
16 PRK06388 amidophosphoribosyltr 100.0 4.6E-32 1E-36 258.9 20.7 173 26-201 32-244 (474)
17 PRK07272 amidophosphoribosyltr 100.0 8.4E-32 1.8E-36 257.6 22.1 173 26-200 24-237 (484)
18 PRK07349 amidophosphoribosyltr 100.0 9.8E-32 2.1E-36 257.8 21.5 174 26-201 47-265 (500)
19 PRK08341 amidophosphoribosyltr 100.0 1.9E-31 4.1E-36 252.9 22.0 170 25-199 15-223 (442)
20 PRK06781 amidophosphoribosyltr 100.0 3.9E-31 8.5E-36 252.5 21.8 172 26-200 24-235 (471)
21 PLN02440 amidophosphoribosyltr 100.0 6.5E-31 1.4E-35 252.0 21.9 172 26-199 14-225 (479)
22 PRK09123 amidophosphoribosyltr 100.0 6.6E-31 1.4E-35 251.6 21.7 173 26-201 34-248 (479)
23 cd01907 GlxB Glutamine amidotr 100.0 6.8E-31 1.5E-35 232.9 19.4 163 25-192 15-248 (249)
24 cd00715 GPATase_N Glutamine am 100.0 3.2E-30 6.9E-35 228.7 21.9 173 26-200 13-226 (252)
25 PRK07847 amidophosphoribosyltr 100.0 1.2E-30 2.5E-35 250.9 20.4 171 26-199 37-254 (510)
26 PRK05793 amidophosphoribosyltr 100.0 3.2E-30 6.9E-35 246.7 21.0 173 26-201 29-241 (469)
27 PRK09246 amidophosphoribosyltr 100.0 1.8E-30 3.9E-35 250.2 19.4 169 27-196 15-235 (501)
28 PRK00331 glucosamine--fructose 100.0 5.4E-30 1.2E-34 252.2 21.0 171 26-201 14-225 (604)
29 TIGR01134 purF amidophosphorib 100.0 1.8E-29 3.9E-34 240.1 21.9 172 26-200 14-226 (442)
30 TIGR01135 glmS glucosamine--fr 100.0 6.4E-30 1.4E-34 251.8 19.1 171 26-201 13-224 (607)
31 cd01909 betaLS_CarA_N Glutamin 100.0 5.3E-30 1.2E-34 219.7 15.4 122 72-203 49-199 (199)
32 cd00352 Gn_AT_II Glutamine ami 100.0 1.2E-29 2.5E-34 218.0 17.0 162 30-191 21-220 (220)
33 PF13537 GATase_7: Glutamine a 100.0 2E-29 4.4E-34 201.1 10.6 117 56-176 1-125 (125)
34 PTZ00295 glucosamine-fructose- 100.0 2.2E-28 4.7E-33 242.3 19.7 172 25-201 36-255 (640)
35 COG0034 PurF Glutamine phospho 99.9 4E-26 8.8E-31 212.6 18.8 174 25-200 18-235 (470)
36 PF13522 GATase_6: Glutamine a 99.9 1.1E-26 2.3E-31 187.6 12.9 122 41-170 1-133 (133)
37 PTZ00394 glucosamine-fructose- 99.9 3.5E-25 7.5E-30 220.1 19.6 174 25-202 19-280 (670)
38 PLN02981 glucosamine:fructose- 99.9 4.3E-25 9.2E-30 220.0 18.4 173 25-201 19-277 (680)
39 KOG0572 Glutamine phosphoribos 99.9 4.9E-24 1.1E-28 194.2 16.8 167 31-199 21-239 (474)
40 COG0449 GlmS Glucosamine 6-pho 99.9 2.4E-22 5.2E-27 194.4 15.5 167 25-198 14-219 (597)
41 cd00713 GltS Glutamine amidotr 99.8 1.6E-17 3.4E-22 156.0 16.0 134 50-193 201-392 (413)
42 cd01908 YafJ Glutamine amidotr 99.7 6E-17 1.3E-21 144.1 13.2 137 50-195 80-256 (257)
43 TIGR03442 conserved hypothetic 99.7 5.3E-16 1.2E-20 137.8 13.6 137 50-198 82-247 (251)
44 PF00310 GATase_2: Glutamine a 99.6 4.5E-15 9.8E-20 138.0 12.1 114 50-171 195-361 (361)
45 KOG1268 Glucosamine 6-phosphat 99.6 8.6E-15 1.9E-19 138.4 12.3 131 26-159 20-202 (670)
46 KOG0573 Asparagine synthase [A 99.5 1E-13 2.2E-18 129.3 12.0 148 27-188 18-171 (520)
47 PRK11750 gltB glutamate syntha 99.3 3.2E-11 7E-16 126.6 14.3 135 51-193 213-402 (1485)
48 PF13230 GATase_4: Glutamine a 98.7 3.3E-07 7.2E-12 82.5 12.7 139 51-196 72-251 (271)
49 COG0067 GltB Glutamate synthas 98.5 3.4E-07 7.3E-12 85.2 8.2 136 50-198 202-363 (371)
50 PF09147 DUF1933: Domain of un 97.6 0.00039 8.5E-09 58.4 8.5 93 73-175 47-143 (201)
51 COG0121 Predicted glutamine am 96.8 0.0098 2.1E-07 53.1 9.5 38 51-88 71-115 (252)
52 KOG0399 Glutamate synthase [Am 94.1 0.3 6.6E-06 51.9 9.4 68 123-192 406-475 (2142)
53 COG0067 GltB Glutamate synthas 72.1 7.6 0.00017 36.7 5.3 49 122-172 322-370 (371)
54 PF04566 RNA_pol_Rpb2_4: RNA p 68.2 16 0.00035 25.5 5.0 47 100-157 12-60 (63)
55 KOG0876 Manganese superoxide d 44.5 73 0.0016 28.2 6.1 79 77-159 93-182 (234)
56 PF08973 TM1506: Domain of unk 38.5 11 0.00024 30.4 0.2 27 128-157 10-36 (134)
57 TIGR03823 FliZ flagellar regul 33.5 28 0.00061 28.9 1.8 19 73-91 33-51 (168)
58 PRK11582 flagella biosynthesis 33.3 29 0.00062 28.9 1.8 19 73-91 33-51 (169)
59 PRK07225 DNA-directed RNA poly 27.3 1.7E+02 0.0037 29.6 6.5 61 76-159 6-68 (605)
60 PF12594 DUF3764: Protein of u 27.0 27 0.00059 26.1 0.6 20 144-163 27-46 (86)
61 KOG0178 20S proteasome, regula 23.8 5.1E+02 0.011 22.8 10.2 67 26-93 18-90 (249)
62 COG4911 Uncharacterized conser 22.0 91 0.002 24.4 2.6 25 119-143 73-97 (123)
63 TIGR03670 rpoB_arch DNA-direct 21.1 2.1E+02 0.0047 28.9 5.8 47 101-158 13-61 (599)
No 1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=1.7e-57 Score=392.90 Aligned_cols=224 Identities=49% Similarity=0.906 Sum_probs=205.2
Q ss_pred eeeecCCcCCCCccccCCCCCCCchHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCCCCCCCCceEEeCCcEEEEEEE
Q 025395 2 LAVFEKSIGKPPAELNLPSTGSKKSKSRQEIAEIFQILWPETILCNISNGNFMGLSHENESPLHPRSIVVMDDIFCMFIG 81 (253)
Q Consensus 2 l~vf~~~~~~~P~~l~~~~~~~~~~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~~~~~~QP~~~~~~~~~lv~nG 81 (253)
||||+|+||+|||||++|.++.. +..-.++++.+...-|++..+.+++...|+++.-..+.-.|.+++.+++++|++||
T Consensus 1 laif~~~~~~~p~el~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfnG 79 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRTP-AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQG 79 (224)
T ss_pred CcccccccCCCChHHcCCCcccc-CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEEe
Confidence 89999999999999999987332 44556899999999999999999988999998766667788888888999999999
Q ss_pred EEcchHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEEC
Q 025395 82 TSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAG 161 (253)
Q Consensus 82 eI~N~~eL~~~l~~~~s~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~ 161 (253)
+|||+.+|+++|+..++.+|+|+|+++|++++++|+++.++++++|+|+|||+|||..++++++|||++|++||||+...
T Consensus 80 eIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~~ 159 (224)
T cd01910 80 HLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAA 159 (224)
T ss_pred EEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEeC
Confidence 99999999999977788899999999999877788777778999999999999999999999999999999999999877
Q ss_pred CCeEEEEeCchhhhhhcCceeEEeCCCeEEEeCCceEEEeecCCccccccCCCChhhhhcceeEe
Q 025395 162 DGSLICSNDSNLMKEACGISCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQV 226 (253)
Q Consensus 162 dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~~~g~~~y~~~~~~~~~~~~~ds~~~~~~~~f~v 226 (253)
||.++||||+++|...|.+.+.+|||||||.++.|+++|++|.|+++++||+||+++|||++|+|
T Consensus 160 dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s~ggl~~~~~p~~~~~~vp~~~s~g~~cg~~f~v 224 (224)
T cd01910 160 DGSVVFSDDVELVKASCGKSFAPFPKGCFFHSEGGLRSFEHPMNKLKAVPRVDSEGEMCGATFKV 224 (224)
T ss_pred CCEEEEEeCHHHhhhhhccEEEEECCCCEEeCCCCEEEeeCCCchhhcCCcccCcccEecceeeC
Confidence 89999999999999999777899999999998666999999999999999999999999999997
No 2
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=4.9e-53 Score=359.57 Aligned_cols=225 Identities=53% Similarity=0.934 Sum_probs=216.6
Q ss_pred eeeecCCcCCCCccccCCCC---CCCchHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCCCCCCCCceEEeCCcEEEE
Q 025395 2 LAVFEKSIGKPPAELNLPST---GSKKSKSRQEIAEIFQILWPETILCNISNGNFMGLSHENESPLHPRSIVVMDDIFCM 78 (253)
Q Consensus 2 l~vf~~~~~~~P~~l~~~~~---~~~~~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~~~~~~QP~~~~~~~~~lv 78 (253)
||||+|+||+|||||++|.+ ++.+++...++++.+...-|++..+.+++.+.|++++..++...|.++..-++++|+
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi 80 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI 80 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence 89999999999999999997 345688999999999999999999999999999999988778888888888999999
Q ss_pred EEEEEcchHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEE
Q 025395 79 FIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWG 158 (253)
Q Consensus 79 ~nGeI~N~~eL~~~l~~~~s~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg 158 (253)
|-|.|.|...|+++|++.++.|++.+++++|++|+|+||++.++++++|+|.|||||||..++++|+|||+.|..|||||
T Consensus 81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG 160 (228)
T PF12481_consen 81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG 160 (228)
T ss_pred EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEeCCceEEEeecCCccccccCCCChhhhhcceeEe
Q 025395 159 IAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQV 226 (253)
Q Consensus 159 ~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~~~g~~~y~~~~~~~~~~~~~ds~~~~~~~~f~v 226 (253)
.+.||.++||++.+.|.+.|.+...+||+||+|.++.|+++|.+|.++++++||+||+++|||++|+|
T Consensus 161 i~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~~Gl~sfehP~nk~k~~prvDseG~~cGa~FkV 228 (228)
T PF12481_consen 161 IAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSEGGLRSFEHPKNKVKAMPRVDSEGQMCGATFKV 228 (228)
T ss_pred EeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEecCceEeecCCcccccccccccCcccCcceeeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 3
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=5.5e-43 Score=341.59 Aligned_cols=201 Identities=21% Similarity=0.262 Sum_probs=177.0
Q ss_pred chHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCC---CCCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC--CCCC
Q 025395 25 KSKSRQEIAEIFQILWPETILCNISNGNFMGLSHEN---ESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL--SRQA 99 (253)
Q Consensus 25 ~~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~---~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~--~~s~ 99 (253)
....+.+|+++|+|||||++|++..++++|||+||+ ...+.||+++.++++++++||||||+.+|+++|.. |.+.
T Consensus 17 ~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t~ 96 (578)
T PLN02549 17 KRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIVVTANGEIYNHKELREKLKLHKFRTG 96 (578)
T ss_pred hHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCCC
Confidence 356788999999999999999999999999999998 35789999998889999999999999999999974 8999
Q ss_pred CHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcC
Q 025395 100 TEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACG 179 (253)
Q Consensus 100 sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~ 179 (253)
+|+|+|+++|++ ||.+ ++++|+|+|||+|||..++++++||||+|+|||||+...++.++||||+++|...|.
T Consensus 97 sD~Evil~ly~~------~G~~-~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~~~~ 169 (578)
T PLN02549 97 SDCEVIAHLYEE------HGEE-FVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDDCE 169 (578)
T ss_pred CHHHHHHHHHHH------HHHH-HHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHHHhC
Confidence 999999999997 6665 999999999999999999999999999999999999876678999999999999887
Q ss_pred ceeEEeCCCeEEEeCCc-eEEEeecCCccccccCCC--------------ChhhhhcceeEeeecCCCC
Q 025395 180 ISCAPFPPGCMFMNGTG-LMSFVHPLHKVRAIVHED--------------DDRQIGGVSFQVDLYTRLP 233 (253)
Q Consensus 180 ~~i~~~ppG~~~~~~~g-~~~y~~~~~~~~~~~~~d--------------s~~~~~~~~f~v~~~~~l~ 233 (253)
. |.+|||||++..++| +++||++.|.....|..+ ....+++++++|.+|+|||
T Consensus 170 ~-I~~lpPGh~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGLD 237 (578)
T PLN02549 170 R-FEEFPPGHYYSSKAGGFRRWYNPPWFSESIPSTPYDPLVLREAFEKAVIKRLMTDVPFGVLLSGGLD 237 (578)
T ss_pred C-EEEeCCCeEEEEcCCCEEEEEecccCccccCCchhHHHHHHHHHHHHHHHHhccCCceeEeecCCcc
Confidence 6 799999999887655 999999877433232211 1256788999999999998
No 4
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=1.1e-42 Score=338.49 Aligned_cols=200 Identities=21% Similarity=0.297 Sum_probs=176.1
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCC---CCCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC---CCCC
Q 025395 26 SKSRQEIAEIFQILWPETILCNISNGNFMGLSHEN---ESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL---SRQA 99 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~---~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~---~~s~ 99 (253)
+..+.+|+++|+|||||+.|++..++++|||+||+ ...+.||+++.++++++++||||||+.+|+++|.. |.+.
T Consensus 18 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~ 97 (554)
T PRK09431 18 RKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTG 97 (554)
T ss_pred HHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCC
Confidence 57789999999999999999999999999999998 34789999998899999999999999999999864 8899
Q ss_pred CHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcC
Q 025395 100 TEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACG 179 (253)
Q Consensus 100 sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~ 179 (253)
+|+|+|+++|++ ||.+ ++++|+|+|||+|||..++++++||||+|+|||||+...++.++||||+++|...|.
T Consensus 98 sD~Evil~ly~~------~G~~-~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~~~~ 170 (554)
T PRK09431 98 SDCEVILALYQE------KGPD-FLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVCK 170 (554)
T ss_pred CHHHHHHHHHHH------HHHH-HHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHHhcC
Confidence 999999999998 7765 999999999999999999999999999999999999885588999999999999887
Q ss_pred ceeEEeCCCeEEEeCCc-eEEEeecCCccc-cccCC------------CC--hhhhhcceeEeeecCCCC
Q 025395 180 ISCAPFPPGCMFMNGTG-LMSFVHPLHKVR-AIVHE------------DD--DRQIGGVSFQVDLYTRLP 233 (253)
Q Consensus 180 ~~i~~~ppG~~~~~~~g-~~~y~~~~~~~~-~~~~~------------ds--~~~~~~~~f~v~~~~~l~ 233 (253)
. |.+|||||++..++| +.+||++.|.-. ..+.. ++ ...+++++++|.+|||||
T Consensus 171 ~-I~~lpPGh~l~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLD 239 (554)
T PRK09431 171 T-IKEFPPGHYYWSKDGEFVRYYQRDWFDYDAVKDNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLD 239 (554)
T ss_pred C-EEEECCCeEEEECCCcEEEecCCCcccccccCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCcc
Confidence 6 799999999987777 999999876211 11111 01 246788999999999999
No 5
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=337.77 Aligned_cols=201 Identities=23% Similarity=0.310 Sum_probs=173.7
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEe-----CCeEEEEEeCC---CCCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC--
Q 025395 26 SKSRQEIAEIFQILWPETILCNIS-----NGNFMGLSHEN---ESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL-- 95 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~-----~~~~lgh~rl~---~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~-- 95 (253)
+..+.+|+++|+|||||+.|++.. +.++|||+||+ ...+.||+++.+++++++|||||||+.+|+++|..
T Consensus 18 ~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g 97 (586)
T PTZ00077 18 RRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDDETVALMQNGEIYNHWEIRPELEKEG 97 (586)
T ss_pred HHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCCCCCEEEEEEEEEcCHHHHHHHHHhcC
Confidence 466788999999999999999985 57899999998 34689999998899999999999999999999853
Q ss_pred --CCCCCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchh
Q 025395 96 --SRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNL 173 (253)
Q Consensus 96 --~~s~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~a 173 (253)
|.+.+|+|+|+++|++ ||.++++++|+|+|||+|||..++++++||||+|+|||||+...++.++||||+++
T Consensus 98 ~~f~t~sD~Evil~ly~~------~G~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~ka 171 (586)
T PTZ00077 98 YKFSSNSDCEIIGHLYKE------YGPKDFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKA 171 (586)
T ss_pred CcCCCCCHHHHHHHHHHH------hCHHHHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecHHH
Confidence 8999999999999998 78735999999999999999999999999999999999999865678999999999
Q ss_pred hhhhcCceeEEeCCCeEEEeCC--c-eEEEeecCCcccc--ccCCC--------------ChhhhhcceeEeeecCCCC
Q 025395 174 MKEACGISCAPFPPGCMFMNGT--G-LMSFVHPLHKVRA--IVHED--------------DDRQIGGVSFQVDLYTRLP 233 (253)
Q Consensus 174 L~~~~~~~i~~~ppG~~~~~~~--g-~~~y~~~~~~~~~--~~~~d--------------s~~~~~~~~f~v~~~~~l~ 233 (253)
|...|.. |.+|||||++..+. + +++||+|.|+... .|..+ ....++++++++.+|+|||
T Consensus 172 L~~~~~~-I~~lpPGh~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sdvpvGv~LSGGLD 249 (586)
T PTZ00077 172 LHDQCVE-VKQFPPGHYYDQTKEKGEFVRYYNPNWHDFDHPIPTGEIDLEEIREALEAAVRKRLMGDVPFGLFLSGGLD 249 (586)
T ss_pred HHHhcCC-EEEeCCCcEEEecCCcceeEEecCCcccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEecCCch
Confidence 9988876 79999999987653 3 8899998764321 22110 1256789999999999998
No 6
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-41 Score=309.55 Aligned_cols=204 Identities=24% Similarity=0.310 Sum_probs=185.7
Q ss_pred CCchHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCC---CCCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC--CC
Q 025395 23 SKKSKSRQEIAEIFQILWPETILCNISNGNFMGLSHEN---ESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL--SR 97 (253)
Q Consensus 23 ~~~~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~---~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~--~~ 97 (253)
...+....++.++++|||||.+|..+.....++|.||+ +.++.||+++.++.+++..||||||+.+||..+.. |+
T Consensus 14 ~~~~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~ 93 (543)
T KOG0571|consen 14 EAKKPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYVVTVNGEIYNHKKLREHCKDFEFQ 93 (543)
T ss_pred hhcChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEEEEECceeccHHHHHHHhhhcccc
Confidence 34577788999999999999999998888899999999 56899999999999999999999999999999985 89
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhh
Q 025395 98 QATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEA 177 (253)
Q Consensus 98 s~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~ 177 (253)
+.+|+|+|+++|.+ +|..++++.|+|.|||+++|...+++++|||++|++|||||++.|++++||||.|+|...
T Consensus 94 T~sDcEvIi~lY~k------hg~~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~ 167 (543)
T KOG0571|consen 94 TGSDCEVIIHLYEK------HGGEQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDD 167 (543)
T ss_pred cCCCceeeeehHhh------cCchhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhh
Confidence 99999999999997 545679999999999999999999999999999999999999989999999999999999
Q ss_pred cCceeEEeCCCeEEEeCCc-eEEEeecCCccccccC--CC------------ChhhhhcceeEeeecCCCC
Q 025395 178 CGISCAPFPPGCMFMNGTG-LMSFVHPLHKVRAIVH--ED------------DDRQIGGVSFQVDLYTRLP 233 (253)
Q Consensus 178 ~~~~i~~~ppG~~~~~~~g-~~~y~~~~~~~~~~~~--~d------------s~~~~~~~~f~v~~~~~l~ 233 (253)
|.+ |..|||||+|.++.| +.+|++|.|..+.+|. +| -++.|.+++|+|++|++||
T Consensus 168 C~~-i~~fpPgh~y~~~~~~~~r~f~p~w~~~~~~s~p~d~~~~r~~~~~aV~KRLM~d~p~GvLLSGGLD 237 (543)
T KOG0571|consen 168 CEK-IESFPPGHYYTSKTGKLTRYFNPEWFDENIPSTPLDYLALRHTLEKAVRKRLMTDVPFGVLLSGGLD 237 (543)
T ss_pred hhc-eeecCCcceeecccccccCCCCchhhhccCCCCcccHHHHHHHHHHHHHHHhhccCceeEEeeCCch
Confidence 988 789999999999866 9999999996666654 22 1588999999999999999
No 7
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-40 Score=317.86 Aligned_cols=198 Identities=21% Similarity=0.251 Sum_probs=175.2
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCC---CCCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC----CCC
Q 025395 26 SKSRQEIAEIFQILWPETILCNISNGNFMGLSHEN---ESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL----SRQ 98 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~---~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~----~~s 98 (253)
...+.+|++.|+|||||..|+|...++++||+||+ ...+.||+...+++++++|||||||+.+||++|.. |.+
T Consensus 17 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t 96 (542)
T COG0367 17 KSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFRT 96 (542)
T ss_pred hHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEEEEECCEeeeHHHHHHHHHhcCceecc
Confidence 77899999999999999999999999999999998 34689999887777999999999999999999983 999
Q ss_pred CCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhh-
Q 025395 99 ATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEA- 177 (253)
Q Consensus 99 ~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~- 177 (253)
.+|+|+|+++|++ |+.+ ++++|+|+|||+|||..+++||+||||+|+|||||+.. ++.++||||.|+|+..
T Consensus 97 ~sDtEvil~~y~~------~g~~-~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~faSE~Kal~~~~ 168 (542)
T COG0367 97 YSDTEVILTLYEE------WGED-CVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFASEIKALLAHP 168 (542)
T ss_pred ccchHHHHHHHHH------HHHH-HHHHhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEEechhhhhhCC
Confidence 9999999999998 8876 99999999999999999999999999999999999998 4679999999999988
Q ss_pred ----cCceeEEeCCCeEEEeC-Cc-eEEEeecCCccccccCCC------------C--hhhhhcceeEeeecCCCC
Q 025395 178 ----CGISCAPFPPGCMFMNG-TG-LMSFVHPLHKVRAIVHED------------D--DRQIGGVSFQVDLYTRLP 233 (253)
Q Consensus 178 ----~~~~i~~~ppG~~~~~~-~g-~~~y~~~~~~~~~~~~~d------------s--~~~~~~~~f~v~~~~~l~ 233 (253)
+.. |+++||||++... ++ +.+||++.+...+ ...+ + ...+..++.++.+|+|+|
T Consensus 169 ~~~~~~~-i~~l~pg~~l~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~l~~~l~~sV~~r~~advpvg~~lSGGlD 242 (542)
T COG0367 169 VVRFLRD-IKELPPGHLLEFTDGGLIRRYWRLSEKTSK-ESADELAEHLRSLLEDAVKRRLVADVPVGVFLSGGLD 242 (542)
T ss_pred cccccCC-eEEcCCCcEEEEcCCCceeeeecccccccc-cchHHHHHHHHHHHHHHHHHHhccCCcEEEEeCCCcc
Confidence 666 7999999998765 55 9999998875554 1111 1 134468999999999998
No 8
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=1.4e-37 Score=305.05 Aligned_cols=201 Identities=18% Similarity=0.150 Sum_probs=167.0
Q ss_pred chHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCCC----CCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC----C
Q 025395 25 KSKSRQEIAEIFQILWPETILCNISNGNFMGLSHENE----SPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL----S 96 (253)
Q Consensus 25 ~~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~~----~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~----~ 96 (253)
....+..|++.|+|||||+.|++..++++|||+||+. ..+.||+.+.++++++||||||||+.||+++|.. |
T Consensus 16 ~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~f 95 (589)
T TIGR03104 16 DVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGLALVFNGCIYNYRELRAELEALGYRF 95 (589)
T ss_pred hHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCEEEEECCEecCHHHHHHHHHhcCCcc
Confidence 3567899999999999999999999999999999982 3689999988889999999999999999999853 8
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhh
Q 025395 97 RQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKE 176 (253)
Q Consensus 97 ~s~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~ 176 (253)
.+.+|+|+|+++|++ ||.+ ++++|+|+|||+|||..++++++||||+|+|||||+.. ++.++||||+++|+.
T Consensus 96 ~~~sD~Evil~~y~~------~G~~-~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaLl~ 167 (589)
T TIGR03104 96 FSDGDTEVILKAYHA------WGRD-CVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRFASSLPALLA 167 (589)
T ss_pred cCCCHHHHHHHHHHH------HHHH-HHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEEEeCHHHHHh
Confidence 899999999999998 7765 99999999999999999999999999999999999987 578999999999874
Q ss_pred hc---------------------------CceeEEeCCCeEEEeC-Cc---eEEEeecCCcc----ccccC------C--
Q 025395 177 AC---------------------------GISCAPFPPGCMFMNG-TG---LMSFVHPLHKV----RAIVH------E-- 213 (253)
Q Consensus 177 ~~---------------------------~~~i~~~ppG~~~~~~-~g---~~~y~~~~~~~----~~~~~------~-- 213 (253)
.. .+.|..+||||++..+ +| ..+||++...- ..... +
T Consensus 168 ~~~~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i~~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~l~~ 247 (589)
T TIGR03104 168 AGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTVEPDGSRTQRSYWSLDAGRPADDAARTEADWQDAILE 247 (589)
T ss_pred CCCCCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEEECCCCeEEEeeccCCCCcccccCCCCHHHHHHHHHH
Confidence 31 1347899999997643 44 56899875311 00100 0
Q ss_pred ---CC--hhhhhcceeEeeecCCCC
Q 025395 214 ---DD--DRQIGGVSFQVDLYTRLP 233 (253)
Q Consensus 214 ---ds--~~~~~~~~f~v~~~~~l~ 233 (253)
++ ....++++..+.+|||||
T Consensus 248 ~L~~AV~~rl~sd~pvg~~LSGGlD 272 (589)
T TIGR03104 248 ALRLAVKRRLVADVPVGVLLSGGLD 272 (589)
T ss_pred HHHHHHHHHhhcCCceeEEecCCcc
Confidence 01 133567899999999999
No 9
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=5.4e-37 Score=266.53 Aligned_cols=170 Identities=21% Similarity=0.293 Sum_probs=150.2
Q ss_pred chHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCCC---CCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC----CC
Q 025395 25 KSKSRQEIAEIFQILWPETILCNISNGNFMGLSHENE---SPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL----SR 97 (253)
Q Consensus 25 ~~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~~---~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~----~~ 97 (253)
....+..|+..|+|||||+.+++..++++|||+|++. ..+.||+...++++++++||+|||+.+|+++|.. +.
T Consensus 15 ~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~ 94 (220)
T cd00712 15 DRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFR 94 (220)
T ss_pred hHHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCC
Confidence 4677899999999999999999999999999999983 3689999988889999999999999999999865 68
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhh
Q 025395 98 QATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEA 177 (253)
Q Consensus 98 s~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~ 177 (253)
+.+|+|+|+++|++ ||. +++++|+|+|||++||..+++++++||++|+|||||+.. ++.++||||.++|...
T Consensus 95 ~~sD~e~l~~~~~~------~g~-~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aSe~~~l~~~ 166 (220)
T cd00712 95 THSDTEVILHLYEE------WGE-DCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFASELKALLAL 166 (220)
T ss_pred CCChHHHHHHHHHH------HhH-HHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEcchHHHHhc
Confidence 99999999999997 665 599999999999999999999999999999999999998 4789999999999764
Q ss_pred cC--------------------------ceeEEeCCCeEEEeCCc---eEEEee
Q 025395 178 CG--------------------------ISCAPFPPGCMFMNGTG---LMSFVH 202 (253)
Q Consensus 178 ~~--------------------------~~i~~~ppG~~~~~~~g---~~~y~~ 202 (253)
+. +.|+++||||++..+.| +++||+
T Consensus 167 ~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 167 PGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred CCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEEEECCCeEEeeeCC
Confidence 32 34899999999765533 567763
No 10
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=2.4e-37 Score=295.78 Aligned_cols=199 Identities=19% Similarity=0.174 Sum_probs=162.3
Q ss_pred hHHHHHHHHHhHhcCCCCccEE-EeCCeEEEEEeCC---CCCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC----CC
Q 025395 26 SKSRQEIAEIFQILWPETILCN-ISNGNFMGLSHEN---ESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL----SR 97 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~-~~~~~~lgh~rl~---~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~----~~ 97 (253)
...+..|++.|+|||||+.|+| ..++++|||+||+ ...+.||+.+.+++++++|||+|||+.+|+++|.. |.
T Consensus 15 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~ 94 (467)
T TIGR01536 15 DEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQ 94 (467)
T ss_pred HHHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccC
Confidence 4678999999999999999999 8899999999998 23569999988889999999999999999999863 88
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhh
Q 025395 98 QATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEA 177 (253)
Q Consensus 98 s~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~ 177 (253)
+.+|+|+|+++|++ ||.+ ++++|+|+|||+|||..++++++|||++|+|||||+.. ++.++||||+++|...
T Consensus 95 ~~~D~e~il~~y~~------~g~~-~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~~~ 166 (467)
T TIGR01536 95 TDSDTEVILHLYEE------WGEE-CVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALLAH 166 (467)
T ss_pred CCCHHHHHHHHHHH------HHHH-HHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHHhc
Confidence 99999999999998 7764 99999999999999999999999999999999999987 6789999999998654
Q ss_pred c---------------------------CceeEEeCCCeEEEeC-Cc---eEEEeecCCcccccc------CC-----CC
Q 025395 178 C---------------------------GISCAPFPPGCMFMNG-TG---LMSFVHPLHKVRAIV------HE-----DD 215 (253)
Q Consensus 178 ~---------------------------~~~i~~~ppG~~~~~~-~g---~~~y~~~~~~~~~~~------~~-----ds 215 (253)
+ .+.|..+||||++..+ ++ .++||.+.. ..... .+ ++
T Consensus 167 ~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~l~~~l~~a 245 (467)
T TIGR01536 167 PRNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPLEDDGLNIERYYWERRD-EHTDSEEDLVDELRSLLEDA 245 (467)
T ss_pred cccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEEeCCCceEEEEecCCCC-CCCCCHHHHHHHHHHHHHHH
Confidence 3 1347899999997644 33 334554221 11000 00 01
Q ss_pred --hhhhhcceeEeeecCCCC
Q 025395 216 --DRQIGGVSFQVDLYTRLP 233 (253)
Q Consensus 216 --~~~~~~~~f~v~~~~~l~ 233 (253)
.....+.+..+.+|+|+|
T Consensus 246 V~~r~~~~~~vg~~LSGGlD 265 (467)
T TIGR01536 246 VKRRLVADVPVGVLLSGGLD 265 (467)
T ss_pred HHHHhccCCceEEEecCChh
Confidence 122356788999999998
No 11
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=4.2e-36 Score=296.67 Aligned_cols=202 Identities=18% Similarity=0.196 Sum_probs=165.7
Q ss_pred chHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCC---CCCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC----CC
Q 025395 25 KSKSRQEIAEIFQILWPETILCNISNGNFMGLSHEN---ESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL----SR 97 (253)
Q Consensus 25 ~~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~---~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~----~~ 97 (253)
....+..|+++|+|||||+.|++..++++|||+|++ ...+.||+++.+++++++|||+|||+.||+++|.. |.
T Consensus 17 ~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~~~ 96 (628)
T TIGR03108 17 DRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVVVVFNGEIYNFQELVAELQALGHVFR 96 (628)
T ss_pred cHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEEEEECCeECCHHHHHHHHHhcCCccC
Confidence 356789999999999999999999999999999998 23689999998899999999999999999999853 88
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhh
Q 025395 98 QATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEA 177 (253)
Q Consensus 98 s~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~ 177 (253)
+.+|+|+|+++|++ ||.+ ++++|+|+|||++||..+++++++||++|+|||||+...++.++||||+++|+..
T Consensus 97 ~~sD~Evi~~~~~~------~g~~-~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al~~~ 169 (628)
T TIGR03108 97 TRSDTEVIVHAWEE------WGEA-CVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAH 169 (628)
T ss_pred CCChHHHHHHHHHH------HHHH-HHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHHHhC
Confidence 99999999999998 7765 9999999999999999999999999999999999997656789999999998643
Q ss_pred c--------------------------CceeEEeCCCeEEEeC-Cc----eEEEeecCCccccccCC------------C
Q 025395 178 C--------------------------GISCAPFPPGCMFMNG-TG----LMSFVHPLHKVRAIVHE------------D 214 (253)
Q Consensus 178 ~--------------------------~~~i~~~ppG~~~~~~-~g----~~~y~~~~~~~~~~~~~------------d 214 (253)
. .+.|+.+||||++..+ ++ +.+||.+...-...... +
T Consensus 170 ~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~~~~~~~~~~~~~yw~~~~~~~~~~~~~e~~e~l~~~l~~ 249 (628)
T TIGR03108 170 PSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLTLRRGAPPARPRCYWDVSFAPAAPLSEADALAELIERLRE 249 (628)
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEEEECCCcceeccccccCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 1 2348999999997543 22 46788764320000000 1
Q ss_pred C--hhhhhcceeEeeecCCCC
Q 025395 215 D--DRQIGGVSFQVDLYTRLP 233 (253)
Q Consensus 215 s--~~~~~~~~f~v~~~~~l~ 233 (253)
+ .....+++..+.+|+|||
T Consensus 250 aV~~rl~~d~~vg~~LSGGlD 270 (628)
T TIGR03108 250 AVRSRMVADVPLGAFLSGGVD 270 (628)
T ss_pred HHHHHHhcCCcceEeecCCcc
Confidence 1 123456788999999999
No 12
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.9e-33 Score=263.16 Aligned_cols=173 Identities=16% Similarity=0.120 Sum_probs=142.0
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEe---------------------------CCeEEEEEeCCC-----CCCCCceEE--e
Q 025395 26 SKSRQEIAEIFQILWPETILCNIS---------------------------NGNFMGLSHENE-----SPLHPRSIV--V 71 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~---------------------------~~~~lgh~rl~~-----~~~~QP~~~--~ 71 (253)
...+..|+.+|+|||||+.|+... ++++|||+||++ ..+.||+++ .
T Consensus 14 ~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at~g~~~~~naqP~~~~~~ 93 (445)
T PRK08525 14 AKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYSTAGNDSILDAQPVFARYD 93 (445)
T ss_pred HHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeecccccCCCCCCCCCCCeEeecC
Confidence 456678999999999999998762 358999999983 267999987 5
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC-CCHHHHhcccccceEEEEEeCCCCEEEEE
Q 025395 72 MDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP-YPPDQVVKDLQGKFAFILFDAKSHTLFAA 146 (253)
Q Consensus 72 ~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~-~g~~~~l~~L~G~FAfvi~D~~~~~l~~a 146 (253)
+++++++|||+|||+.+||++|.. |.+.+|+|+|+++|....+... ..+.+++++|+|+|||++++. ++++++
T Consensus 94 ~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~~~~~ea~~~~~~~L~G~fa~vi~~~--~~l~~~ 171 (445)
T PRK08525 94 LGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKKESLKDRIIEALKKIIGAYCLVLLSR--SKMFAI 171 (445)
T ss_pred CCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCceEEEEEeC--CEEEEE
Confidence 688999999999999999999954 8999999999999985211000 123469999999999999996 799999
Q ss_pred EeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEe---CCceEEE
Q 025395 147 RDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMN---GTGLMSF 200 (253)
Q Consensus 147 RD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~---~~g~~~y 200 (253)
||++|+|||||+...++.++||||.++|.....+.+.+++||+++.. ++|++.+
T Consensus 172 RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~~~~~~ 228 (445)
T PRK08525 172 RDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFESI 228 (445)
T ss_pred ECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCCceEEE
Confidence 99999999999986456899999999997766666789999998654 3456553
No 13
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=100.00 E-value=2.5e-33 Score=237.46 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=127.5
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEe----CCeEEEEEeCC---CCCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcCCCC
Q 025395 26 SKSRQEIAEIFQILWPETILCNIS----NGNFMGLSHEN---ESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQ 98 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~----~~~~lgh~rl~---~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~~~s 98 (253)
...+.+|+++|+|||||+.+++.. ..+.++|+||+ ...+.||+...+++++++|||+|||+.+|++ +
T Consensus 18 ~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~~~~~lv~NGeIyN~~~l~~------s 91 (181)
T cd03766 18 SLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQSTGNVLQWNGELYNIDGVED------E 91 (181)
T ss_pred hhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCCCCEEEEECCEEECcccccC------C
Confidence 466789999999999999999876 45899999998 2468999998777899999999999999874 6
Q ss_pred CCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEEC-CCeEEEEeCchhhhhh
Q 025395 99 ATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAG-DGSLICSNDSNLMKEA 177 (253)
Q Consensus 99 ~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~-dg~~~faSe~~aL~~~ 177 (253)
.+|+|+|+++|++.... ..++.+++++|+|+|||++||..++++|+||||+|+|||||+... ++.++|||+.....
T Consensus 92 ~sDtEvi~~l~~~~g~~-~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~~~~-- 168 (181)
T cd03766 92 ENDTEVIFELLANCSSE-SQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSS-- 168 (181)
T ss_pred CCHHHHHHHHHHHHhhh-HHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccCCCC--
Confidence 89999999999861100 012346999999999999999999999999999999999999875 67899999986432
Q ss_pred cCceeEEeCCC
Q 025395 178 CGISCAPFPPG 188 (253)
Q Consensus 178 ~~~~i~~~ppG 188 (253)
... +.++||+
T Consensus 169 ~~~-~~e~~~~ 178 (181)
T cd03766 169 GSG-FQEVLAG 178 (181)
T ss_pred CCc-eEECCCC
Confidence 223 6888884
No 14
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.5e-32 Score=262.14 Aligned_cols=173 Identities=14% Similarity=0.093 Sum_probs=143.5
Q ss_pred hHHHHHHHHHhHhcCCCCccEEE---------------------------eCCeEEEEEeCCC-----CCCCCceEE--e
Q 025395 26 SKSRQEIAEIFQILWPETILCNI---------------------------SNGNFMGLSHENE-----SPLHPRSIV--V 71 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~---------------------------~~~~~lgh~rl~~-----~~~~QP~~~--~ 71 (253)
...+..++.+|+|||||+.|+.. .++++|||+||++ ..+.||++. .
T Consensus 24 ~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT~G~~~~~n~QP~~~~~~ 103 (475)
T PRK07631 24 AQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYATAGGGGYENVQPLLFRSQ 103 (475)
T ss_pred HHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccccCCCCcCCcCCeEeEcC
Confidence 45667899999999999999874 2568999999983 257999963 4
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC-CCHHHHhcccccceEEEEEeCCCCEEEEE
Q 025395 72 MDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP-YPPDQVVKDLQGKFAFILFDAKSHTLFAA 146 (253)
Q Consensus 72 ~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~-~g~~~~l~~L~G~FAfvi~D~~~~~l~~a 146 (253)
+++++++|||+|+|+++||++|.. |.+.+|+|+|+++|.+...... ..+.+++++|+|+|||+++|. +.++++
T Consensus 104 ~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~~~eai~~~~~~l~G~yalvi~~~--~~l~aa 181 (475)
T PRK07631 104 TGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKNALSMLKGAYAFLLMTE--TELYVA 181 (475)
T ss_pred CCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeEEeC--CEEEEE
Confidence 578999999999999999999964 8999999999999986211100 123468999999999999996 789999
Q ss_pred EeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEe-CCceEEEe
Q 025395 147 RDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMN-GTGLMSFV 201 (253)
Q Consensus 147 RD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~-~~g~~~y~ 201 (253)
|||+|+||||||.. ++.++||||.++|...+.+.+++++||+++.. ++|+..|.
T Consensus 182 RDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~~~~~ 236 (475)
T PRK07631 182 LDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGMRSER 236 (475)
T ss_pred ECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcEEEEe
Confidence 99999999999997 46799999999998887777899999998654 57766553
No 15
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=100.00 E-value=1.6e-32 Score=238.17 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=137.8
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEe---------------------------CCeEEEEEeCCC-----CCCCCceEEeCC
Q 025395 26 SKSRQEIAEIFQILWPETILCNIS---------------------------NGNFMGLSHENE-----SPLHPRSIVVMD 73 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~---------------------------~~~~lgh~rl~~-----~~~~QP~~~~~~ 73 (253)
...+..|+.+++|||||+.|++.. +.++|||+|+++ ..+.||+...++
T Consensus 13 ~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qPf~~~~~ 92 (215)
T cd00714 13 VDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATHGEPTDVNAHPHRSCDG 92 (215)
T ss_pred HHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCCCCCCccCCCCCCcCCC
Confidence 456788999999999999999864 468999999983 357999987777
Q ss_pred cEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC---CCHHHHhcccccceEEEEEeCCC-CEEEE
Q 025395 74 DIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP---YPPDQVVKDLQGKFAFILFDAKS-HTLFA 145 (253)
Q Consensus 74 ~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~---~g~~~~l~~L~G~FAfvi~D~~~-~~l~~ 145 (253)
+++++|||+|||+++|+++|.. +.+.+|+|+|+++|.+....+. ..+.+++++|+|+|||++||..+ +++++
T Consensus 93 ~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l~~ 172 (215)
T cd00714 93 EIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEIVA 172 (215)
T ss_pred CEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEeCCCCEEEE
Confidence 8999999999999999999953 8899999999999987332221 12346999999999999999876 49999
Q ss_pred EEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEE
Q 025395 146 ARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFM 192 (253)
Q Consensus 146 aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~ 192 (253)
+|| .|||||+.. ++.++||||.++|...|.+ +..+.+|.++.
T Consensus 173 ~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~~~~~~~~~ 214 (215)
T cd00714 173 ARN---GSPLVIGIG-DGENFVASDAPALLEHTRR-VIYLEDGDIAV 214 (215)
T ss_pred EEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCE-EEEECCCCEEe
Confidence 999 599999987 5689999999999999987 68999998753
No 16
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.6e-32 Score=258.93 Aligned_cols=173 Identities=15% Similarity=0.098 Sum_probs=144.4
Q ss_pred hHHHHHHHHHhHhcCCCCccEEE--------------------------eCCeEEEEEeCCC-----CCCCCceEE--eC
Q 025395 26 SKSRQEIAEIFQILWPETILCNI--------------------------SNGNFMGLSHENE-----SPLHPRSIV--VM 72 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~--------------------------~~~~~lgh~rl~~-----~~~~QP~~~--~~ 72 (253)
...+..+|.+|+|||+|+.|+.. .++++|||+||++ ..+.||+.. ..
T Consensus 32 ~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~G~~~~~naqP~~~~~~~ 111 (474)
T PRK06388 32 YSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTAGSKGVENAGPFVINSSL 111 (474)
T ss_pred HHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeecCCCCccCCCCeEeecCC
Confidence 56788999999999999999886 2357999999983 367999973 35
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhh-hcCC-CCHHHHhcccccceEEEEEeCCCCEEEEE
Q 025395 73 DDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLR-DRAP-YPPDQVVKDLQGKFAFILFDAKSHTLFAA 146 (253)
Q Consensus 73 ~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~-~~g~-~g~~~~l~~L~G~FAfvi~D~~~~~l~~a 146 (253)
++++++|||+|+|+.+||++|.. |.+.+|+|+|+++|.+.. ..+. .++.+++++|+|+|||++++. ++++++
T Consensus 112 g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~a~ 189 (474)
T PRK06388 112 GYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRGAYACALMIN--DRLYAI 189 (474)
T ss_pred CCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceeEEEEEC--CEEEEE
Confidence 78999999999999999999964 899999999999996532 2110 124579999999999999976 899999
Q ss_pred EeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEE-eCCceEEEe
Q 025395 147 RDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFM-NGTGLMSFV 201 (253)
Q Consensus 147 RD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~y~ 201 (253)
|||+|+||||||.. ++.++||||.++|.....+.+.+++||+++. +++|+.+++
T Consensus 190 RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~~~~~ 244 (474)
T PRK06388 190 RDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIF 244 (474)
T ss_pred ECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCceEEEE
Confidence 99999999999987 5678999999999988776689999999865 457775544
No 17
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.4e-32 Score=257.58 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=144.1
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEe----------------------------CCeEEEEEeCCC-----CCCCCceEE--
Q 025395 26 SKSRQEIAEIFQILWPETILCNIS----------------------------NGNFMGLSHENE-----SPLHPRSIV-- 70 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~----------------------------~~~~lgh~rl~~-----~~~~QP~~~-- 70 (253)
...+..++.+|+|||+|+.|+... ++++|||+||++ ..+.||++.
T Consensus 24 ~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~RysT~G~~~~~naqP~~~~~ 103 (484)
T PRK07272 24 AQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYATAGSASIENIQPFLFHF 103 (484)
T ss_pred HHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeeccccCCCCcCCCCCEEeec
Confidence 556778999999999999998762 358999999983 258999976
Q ss_pred eCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC-CCHHHHhcccccceEEEEEeCCCCEEEE
Q 025395 71 VMDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP-YPPDQVVKDLQGKFAFILFDAKSHTLFA 145 (253)
Q Consensus 71 ~~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~-~g~~~~l~~L~G~FAfvi~D~~~~~l~~ 145 (253)
.+++++++|||+|+|+.+||++|.. |.+.+|+|+|+++|.+...... ..+.+++++|+|+|||++++. +++++
T Consensus 104 ~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~~~~~eai~~~~~~l~G~ya~~i~~~--~~l~a 181 (484)
T PRK07272 104 HDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKEALNTVKGGFAYLLLTE--DKLIA 181 (484)
T ss_pred CCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHccCceeEEEEEC--CEEEE
Confidence 4578999999999999999999964 8999999999999986211100 134578999999999999986 78999
Q ss_pred EEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEe-CCceEEE
Q 025395 146 ARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMN-GTGLMSF 200 (253)
Q Consensus 146 aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~-~~g~~~y 200 (253)
+|||+|+||||||...++.++||||.++|.....+.+++++||+++.. ++|++.+
T Consensus 182 ~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g~~~~ 237 (484)
T PRK07272 182 ALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEGIQYD 237 (484)
T ss_pred EECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCceEEE
Confidence 999999999999986556799999999998877666889999999764 5676654
No 18
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=9.8e-32 Score=257.81 Aligned_cols=174 Identities=16% Similarity=0.130 Sum_probs=143.6
Q ss_pred hHHHHHHHHHhHhcCCCCccEEE---------------------------eCCeEEEEEeCCC-----CCCCCceEEe--
Q 025395 26 SKSRQEIAEIFQILWPETILCNI---------------------------SNGNFMGLSHENE-----SPLHPRSIVV-- 71 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~---------------------------~~~~~lgh~rl~~-----~~~~QP~~~~-- 71 (253)
...+..+|.+|+|||+|+.|+.. .++++|||+||++ ..+.||+...
T Consensus 47 ~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT~G~~~~~naQP~~~~~~ 126 (500)
T PRK07349 47 AKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYSTTGSSRKANAQPAVLETR 126 (500)
T ss_pred HHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeecccCCCCCccCCCCeEeecC
Confidence 45566899999999999999864 2357999999993 3579999864
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcC-CC--CHHHHhcccccceEEEEEeCCCCEEE
Q 025395 72 MDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRA-PY--PPDQVVKDLQGKFAFILFDAKSHTLF 144 (253)
Q Consensus 72 ~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g-~~--g~~~~l~~L~G~FAfvi~D~~~~~l~ 144 (253)
.++++++|||+|+|+.+||++|.. |.+.+|+|+|+++|....+.+ .+ ++.+++++|+|+|||++.+. ++++
T Consensus 127 ~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~ 204 (500)
T PRK07349 127 LGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGTP--EGLM 204 (500)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEEEEeC--CEEE
Confidence 478999999999999999999963 899999999999998633332 12 24568999999999999876 7899
Q ss_pred EEEeCCCCceEEEEEEC---CCeEEEEeCchhhhhhcCceeEEeCCCeEEEe-CCceEEEe
Q 025395 145 AARDCDGGVDLNWGIAG---DGSLICSNDSNLMKEACGISCAPFPPGCMFMN-GTGLMSFV 201 (253)
Q Consensus 145 ~aRD~~G~rPLyyg~~~---dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~-~~g~~~y~ 201 (253)
++||++|+||||||... ++.++||||.++|.....+.+++++||+++.. ++|+..|.
T Consensus 205 aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~~~g~~~~~ 265 (500)
T PRK07349 205 GVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWITEGGLSSFH 265 (500)
T ss_pred EEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEECCceEEEe
Confidence 99999999999999862 35799999999998776666899999999764 56766653
No 19
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.9e-31 Score=252.93 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=141.5
Q ss_pred chHHHHHHHHHhHhcCCCCccEEE--------------------------eCCeEEEEEeCCC---CCCCCceEEe--CC
Q 025395 25 KSKSRQEIAEIFQILWPETILCNI--------------------------SNGNFMGLSHENE---SPLHPRSIVV--MD 73 (253)
Q Consensus 25 ~~~~~~~ml~~l~hRGpd~~g~~~--------------------------~~~~~lgh~rl~~---~~~~QP~~~~--~~ 73 (253)
....+..+|.+|+|||+|+.|+.. .++++|||+||++ ..+.||+... ++
T Consensus 15 ~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~G~~~~~QP~~~~~~~g 94 (442)
T PRK08341 15 APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTSGSLSEVQPLEVECCGY 94 (442)
T ss_pred cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeeccccCCCcCcCCEEeecCCC
Confidence 356788999999999999999854 2578999999993 4789999764 47
Q ss_pred cEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhh-hcCC--CCHHHHhcccccceEEEEEeCCCCEEEEE
Q 025395 74 DIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLR-DRAP--YPPDQVVKDLQGKFAFILFDAKSHTLFAA 146 (253)
Q Consensus 74 ~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~-~~g~--~g~~~~l~~L~G~FAfvi~D~~~~~l~~a 146 (253)
+++++|||+|+|+.+||++|.. |.+.+|+|+|++++.... +.+. ..+.+++++|+|+|||++++. ++++++
T Consensus 95 ~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~yal~i~~~--~~l~a~ 172 (442)
T PRK08341 95 KIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGAYSVAILFD--GKIIVA 172 (442)
T ss_pred CEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceEEEEEEC--CEEEEE
Confidence 8999999999999999999963 899999999999875422 2222 234568999999999999986 799999
Q ss_pred EeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEe-CCceEE
Q 025395 147 RDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMN-GTGLMS 199 (253)
Q Consensus 147 RD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~-~~g~~~ 199 (253)
||++|+||||||.. + .++||||.++|...+. .+.+++||+++.. ++|+++
T Consensus 173 RD~~GirPL~~G~~-~-~~~~ASE~~Al~~~~~-~v~~l~PGeiv~i~~~g~~~ 223 (442)
T PRK08341 173 RDPVGFRPLSYGEG-D-GHYFASEDSALRMFVN-EIRDVFPGEVFVVSEGEVES 223 (442)
T ss_pred EcCCCceEEEEEEC-C-EEEEEeCcHHHHhhCC-eEEEeCCCEEEEEECCceEE
Confidence 99999999999984 4 4899999999988876 4899999999764 466664
No 20
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.98 E-value=3.9e-31 Score=252.54 Aligned_cols=172 Identities=13% Similarity=0.118 Sum_probs=142.6
Q ss_pred hHHHHHHHHHhHhcCCCCccEEE---------------------------eCCeEEEEEeCCC-----CCCCCceEE--e
Q 025395 26 SKSRQEIAEIFQILWPETILCNI---------------------------SNGNFMGLSHENE-----SPLHPRSIV--V 71 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~---------------------------~~~~~lgh~rl~~-----~~~~QP~~~--~ 71 (253)
...+..++.+|+|||||+.|+.. .++++|||+||++ ..+.||++. .
T Consensus 24 ~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT~G~~~~~naqP~~~~~~ 103 (471)
T PRK06781 24 AQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYATAGGSEVANVQPLLFRFS 103 (471)
T ss_pred HHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEcccCCCCCcCCCCCeEEecC
Confidence 45666899999999999999873 2457999999983 267899965 3
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC-CCHHHHhcccccceEEEEEeCCCCEEEEE
Q 025395 72 MDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP-YPPDQVVKDLQGKFAFILFDAKSHTLFAA 146 (253)
Q Consensus 72 ~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~-~g~~~~l~~L~G~FAfvi~D~~~~~l~~a 146 (253)
+++++++|||+|+|+++||++|.. |.+.+|+|+|+++|.+...... ..+.+++++|+|+|||++++. ++++++
T Consensus 104 ~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~aa 181 (471)
T PRK06781 104 DHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKGAFAYLLLTG--NEMIVA 181 (471)
T ss_pred CCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCcEEEEEEEC--CEEEEE
Confidence 578999999999999999999964 8999999999999986221100 234578999999999999996 789999
Q ss_pred EeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEe-CCceEEE
Q 025395 147 RDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMN-GTGLMSF 200 (253)
Q Consensus 147 RD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~-~~g~~~y 200 (253)
||++|+||||||.. ++.++||||.++|.....+.+.+++||+++.. ++|+..+
T Consensus 182 RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~~~~ 235 (471)
T PRK06781 182 LDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVD 235 (471)
T ss_pred ECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCceEEE
Confidence 99999999999997 56799999999998776666889999999764 4666654
No 21
>PLN02440 amidophosphoribosyltransferase
Probab=99.98 E-value=6.5e-31 Score=252.00 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=142.6
Q ss_pred hHHHHHHHHHhHhcCCCCccEEE---------------------------eCCeEEEEEeCCC-----CCCCCceEEe--
Q 025395 26 SKSRQEIAEIFQILWPETILCNI---------------------------SNGNFMGLSHENE-----SPLHPRSIVV-- 71 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~---------------------------~~~~~lgh~rl~~-----~~~~QP~~~~-- 71 (253)
...+..|+.+|+|||||+.|+.. .++++|||+|+++ ..+.||++..
T Consensus 14 ~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G~~~~~n~QPf~~~~~ 93 (479)
T PLN02440 14 SRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYSTAGASSLKNVQPFVANYR 93 (479)
T ss_pred HHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccccCCCCccCCCCceeecC
Confidence 45688999999999999999875 3568999999983 3689999863
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC-CCHHHHhcccccceEEEEEeCCCCEEEEE
Q 025395 72 MDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP-YPPDQVVKDLQGKFAFILFDAKSHTLFAA 146 (253)
Q Consensus 72 ~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~-~g~~~~l~~L~G~FAfvi~D~~~~~l~~a 146 (253)
.++++++|||+|+|+++|+++|.. |.+.+|+|+|+++|.+..+... ....+++++|+|+|||++||. ++++++
T Consensus 94 ~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G~fa~vi~~~--~~l~a~ 171 (479)
T PLN02440 94 FGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKGAYSMVFLTE--DKLVAV 171 (479)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHhccceeeeEEEC--CEEEEE
Confidence 477999999999999999999864 8899999999999975211100 123569999999999999996 679999
Q ss_pred EeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEE-eCCceEE
Q 025395 147 RDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFM-NGTGLMS 199 (253)
Q Consensus 147 RD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~ 199 (253)
|||+|+|||||+...++.++||||.++|.....+.+.+++||+++. +++|+.+
T Consensus 172 RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~g~~~ 225 (479)
T PLN02440 172 RDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKDKGVS 225 (479)
T ss_pred ECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECCCcEE
Confidence 9999999999998656679999999999887677789999999865 4567433
No 22
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=6.6e-31 Score=251.60 Aligned_cols=173 Identities=14% Similarity=0.086 Sum_probs=142.9
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEe----------------------------CCeEEEEEeCCC-----CCCCCceEEe-
Q 025395 26 SKSRQEIAEIFQILWPETILCNIS----------------------------NGNFMGLSHENE-----SPLHPRSIVV- 71 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~----------------------------~~~~lgh~rl~~-----~~~~QP~~~~- 71 (253)
...+..++.+|+|||||+.|+... ++++|||+||++ ..+.||++..
T Consensus 34 ~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~sT~G~~~~~n~QP~~~~~ 113 (479)
T PRK09123 34 AALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYSTTGETILRNVQPLFAEL 113 (479)
T ss_pred HHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecccCCCCCcCCCCCceeec
Confidence 456778999999999999998751 357999999983 2679999864
Q ss_pred -CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC-CCHHHHhcccccceEEEEEeCCCCEEEE
Q 025395 72 -MDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP-YPPDQVVKDLQGKFAFILFDAKSHTLFA 145 (253)
Q Consensus 72 -~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~-~g~~~~l~~L~G~FAfvi~D~~~~~l~~ 145 (253)
+++++++|||+|+|+.+||++|.. |.+.+|+|+|+++|.+..+... ..+.+++++|+|+|||++++. +++++
T Consensus 114 ~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~~~~~eai~~~~~~L~G~ya~vil~~--~~l~a 191 (479)
T PRK09123 114 EFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLDRFIDALRQVEGAYSLVALTN--TKLIG 191 (479)
T ss_pred CCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcceeEEEEEC--CEEEE
Confidence 678999999999999999999953 8999999999999985211100 123569999999999999997 79999
Q ss_pred EEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEe-CCc-eEEEe
Q 025395 146 ARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMN-GTG-LMSFV 201 (253)
Q Consensus 146 aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~-~~g-~~~y~ 201 (253)
+||++|+|||||+.. ++.++||||.++|.....+.+++++||+++.. .+| ++.+.
T Consensus 192 ~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~ 248 (479)
T PRK09123 192 ARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDGSIESIK 248 (479)
T ss_pred EECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCCcEEEEE
Confidence 999999999999997 56899999999997765556899999998654 467 76654
No 23
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.97 E-value=6.8e-31 Score=232.86 Aligned_cols=163 Identities=13% Similarity=0.053 Sum_probs=137.0
Q ss_pred chHHHHHHHHHhHhcCC-CCccEEEe------------------------------------CCeEEEEEeCCC-----C
Q 025395 25 KSKSRQEIAEIFQILWP-ETILCNIS------------------------------------NGNFMGLSHENE-----S 62 (253)
Q Consensus 25 ~~~~~~~ml~~l~hRGp-d~~g~~~~------------------------------------~~~~lgh~rl~~-----~ 62 (253)
....+..|+.+|+|||| |+.|+++. ++++|||+||++ .
T Consensus 15 ~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~~igH~R~aT~g~~~~ 94 (249)
T cd01907 15 VGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYHWIAHTRQPTNSAVWW 94 (249)
T ss_pred cHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEEEEEEEeccCCCCCCc
Confidence 46788899999999999 99998873 458999999983 2
Q ss_pred CCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCCC--------------------
Q 025395 63 PLHPRSIVVMDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAPY-------------------- 118 (253)
Q Consensus 63 ~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~~-------------------- 118 (253)
.+.||+.. ++++++|||+|+|+.+|+++|.. |.+.+|+|+++++|+.+.+.+..
T Consensus 95 ~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~~~~i~~~~~~~~~~~ 172 (249)
T cd01907 95 YGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLL 172 (249)
T ss_pred cCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHhcCCHhHHHHHH
Confidence 58999976 48999999999999999999864 88999999999999763322112
Q ss_pred --CHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhc---CceeEEeCCCeEEE
Q 025395 119 --PPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEAC---GISCAPFPPGCMFM 192 (253)
Q Consensus 119 --g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~---~~~i~~~ppG~~~~ 192 (253)
.+..++++|+|+|||++++. +.++++|||+|.|||||+.. ++.++||||.++|...+ .+.+.++.||+++.
T Consensus 173 ~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~v~ 248 (249)
T cd01907 173 ALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRDNAKVWEPRPGEYVI 248 (249)
T ss_pred HHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccchheEecCCCCceEe
Confidence 12257899999999999997 67999999999999999998 56899999999998774 44578999999874
No 24
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.97 E-value=3.2e-30 Score=228.69 Aligned_cols=173 Identities=15% Similarity=0.103 Sum_probs=141.8
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEe---------------------------CCeEEEEEeCCC-----CCCCCceEEe--
Q 025395 26 SKSRQEIAEIFQILWPETILCNIS---------------------------NGNFMGLSHENE-----SPLHPRSIVV-- 71 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~---------------------------~~~~lgh~rl~~-----~~~~QP~~~~-- 71 (253)
...+..|+++|+|||||+.|+... +.++|||+|+++ ..+.||+...
T Consensus 13 ~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~g~~~~~n~qPf~~~~~ 92 (252)
T cd00715 13 ARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSP 92 (252)
T ss_pred HHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccCCCCCccCCCCcEEecC
Confidence 466789999999999999998752 247999999983 2579999763
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC--CCHHHHhcccccceEEEEEeCCCCEEEE
Q 025395 72 MDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP--YPPDQVVKDLQGKFAFILFDAKSHTLFA 145 (253)
Q Consensus 72 ~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~--~g~~~~l~~L~G~FAfvi~D~~~~~l~~ 145 (253)
+++++++|||+|+|+++|+++|.. +.+.+|+|+|+++|....+.+. ..+.+++++|+|.|||+++|. +++++
T Consensus 93 ~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~~~d~--~~l~~ 170 (252)
T cd00715 93 LGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTA--DGLIA 170 (252)
T ss_pred CCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccCceEEEEEEC--CEEEE
Confidence 478999999999999999999853 7789999999999986222110 123468999999999999998 89999
Q ss_pred EEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEeC-CceEEE
Q 025395 146 ARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMNG-TGLMSF 200 (253)
Q Consensus 146 aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~~-~g~~~y 200 (253)
+||++|+|||||+...++.++||||.++|.....+.+.++|||+++..+ +++..+
T Consensus 171 ~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~~~~ 226 (252)
T cd00715 171 VRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLESS 226 (252)
T ss_pred EECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCceEEE
Confidence 9999999999999875478999999999987644558999999997654 565554
No 25
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=1.2e-30 Score=250.89 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=140.3
Q ss_pred hHHHHHHHHHhHhcCCCCccEEE---------------------------eCCeEEEEEeCCC-----CCCCCceEEe--
Q 025395 26 SKSRQEIAEIFQILWPETILCNI---------------------------SNGNFMGLSHENE-----SPLHPRSIVV-- 71 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~---------------------------~~~~~lgh~rl~~-----~~~~QP~~~~-- 71 (253)
...+..++.+|+|||+|+.|+.. .++++|||+||++ ..+.||++..
T Consensus 37 ~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT~G~~~~~naQP~~~~~~ 116 (510)
T PRK07847 37 AKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYSTTGASTWENAQPTFRATA 116 (510)
T ss_pred HHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCcCCCCcccCCCCcCcccC
Confidence 34556899999999999999765 1357999999983 2579999753
Q ss_pred -CCcEEEEEEEEEcchHHHHHHhcC---------CCCCCHHHHHHHHHHHhhhcCC--CCHHHHhcccccceEEEEEeCC
Q 025395 72 -MDDIFCMFIGTSENICELKRHYGL---------SRQATEAMVLIEAYKVLRDRAP--YPPDQVVKDLQGKFAFILFDAK 139 (253)
Q Consensus 72 -~~~~~lv~nGeI~N~~eL~~~l~~---------~~s~sD~e~il~ly~~~~~~g~--~g~~~~l~~L~G~FAfvi~D~~ 139 (253)
.++++++|||+|+|+.+|+++|.. |.+.+|+|+|++++....+.+. ..+.+++++|+|+|||+++|.
T Consensus 117 ~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~- 195 (510)
T PRK07847 117 AGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDE- 195 (510)
T ss_pred CCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhhheEEEEEEC-
Confidence 678999999999999999999842 6899999999999986322111 124469999999999999996
Q ss_pred CCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEe-CCceEE
Q 025395 140 SHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMN-GTGLMS 199 (253)
Q Consensus 140 ~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~-~~g~~~ 199 (253)
++++++||++|+|||||+.. ++.++||||.++|.....+.+.+++||+++.. .+|+..
T Consensus 196 -~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~ 254 (510)
T PRK07847 196 -HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAIDADGLRS 254 (510)
T ss_pred -CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEE
Confidence 78999999999999999997 46789999999998765555899999999764 466554
No 26
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=3.2e-30 Score=246.66 Aligned_cols=173 Identities=13% Similarity=0.101 Sum_probs=143.5
Q ss_pred hHHHHHHHHHhHhcCCCCccEEE---------------------------eCCeEEEEEeCCC-----CCCCCceEEe--
Q 025395 26 SKSRQEIAEIFQILWPETILCNI---------------------------SNGNFMGLSHENE-----SPLHPRSIVV-- 71 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~---------------------------~~~~~lgh~rl~~-----~~~~QP~~~~-- 71 (253)
...+..++.+|+|||+|+.|+.+ .++++|||+||++ ..+.||+...
T Consensus 29 ~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT~G~~~~~n~qPf~~~~~ 108 (469)
T PRK05793 29 ASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYSTTGASDLDNAQPLVANYK 108 (469)
T ss_pred HHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeecccCCCCCCCCCCCeEeecC
Confidence 44566799999999999999864 2468999999983 2579999874
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC-CCHHHHhcccccceEEEEEeCCCCEEEEE
Q 025395 72 MDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP-YPPDQVVKDLQGKFAFILFDAKSHTLFAA 146 (253)
Q Consensus 72 ~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~-~g~~~~l~~L~G~FAfvi~D~~~~~l~~a 146 (253)
+++++++|||+|+|+++|+++|.. |.+.+|+|+|++++.+..+.+. ..+.+++++|+|+|||++++. ++++++
T Consensus 109 ~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G~ya~vi~~~--~~l~a~ 186 (469)
T PRK05793 109 LGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTE--DKLIGV 186 (469)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhhceEEEEEC--CEEEEE
Confidence 578999999999999999999854 8999999999999986322110 224579999999999999986 799999
Q ss_pred EeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEe-CCceEEEe
Q 025395 147 RDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMN-GTGLMSFV 201 (253)
Q Consensus 147 RD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~-~~g~~~y~ 201 (253)
||++|+|||||+.. ++.++||||.++|.....+.+++++||+++.. .+|+..+.
T Consensus 187 RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~~~~~ 241 (469)
T PRK05793 187 RDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGIKSIK 241 (469)
T ss_pred ECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCceEEEe
Confidence 99999999999997 56799999999998777666899999999664 46666543
No 27
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=1.8e-30 Score=250.22 Aligned_cols=169 Identities=16% Similarity=0.101 Sum_probs=139.3
Q ss_pred HHHHHHHHHhHhcCCCCccEEE---------------------------eCCeEEEEEeCCC-----CCCCCceEE-eCC
Q 025395 27 KSRQEIAEIFQILWPETILCNI---------------------------SNGNFMGLSHENE-----SPLHPRSIV-VMD 73 (253)
Q Consensus 27 ~~~~~ml~~l~hRGpd~~g~~~---------------------------~~~~~lgh~rl~~-----~~~~QP~~~-~~~ 73 (253)
..+..|+.+|+|||||+.|++. .++++|||+||++ ..+.||++. ..+
T Consensus 15 ~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G~~~~~n~QP~~~~~~~ 94 (501)
T PRK09246 15 QSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPTAGSSSSAEAQPFYVNSPY 94 (501)
T ss_pred HHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCcCCCCCcccCCCEEEeCCC
Confidence 5677899999999999999886 3678999999983 368999974 445
Q ss_pred cEEEEEEEEEcchHHHHHHhcC-----CCCCCHHHHHHHHHHHhhhc--C------C--CCHHHHhcccccceEEEEEeC
Q 025395 74 DIFCMFIGTSENICELKRHYGL-----SRQATEAMVLIEAYKVLRDR--A------P--YPPDQVVKDLQGKFAFILFDA 138 (253)
Q Consensus 74 ~~~lv~nGeI~N~~eL~~~l~~-----~~s~sD~e~il~ly~~~~~~--g------~--~g~~~~l~~L~G~FAfvi~D~ 138 (253)
+++++|||+|+|+++||++|.. |.+.+|+|+|+++|.+.... | . ..+.+++++|+|+|||+++..
T Consensus 95 g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~~~~l~Gays~v~~~~ 174 (501)
T PRK09246 95 GITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVRGAYAVVAMII 174 (501)
T ss_pred CEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcccceeeEEEec
Confidence 6999999999999999999853 78999999999999762211 1 0 123468999999999998743
Q ss_pred CCCEEEEEEeCCCCceEEEEEEC---CCeEEEEeCchhhhhhcCceeEEeCCCeEEE-eCCc
Q 025395 139 KSHTLFAARDCDGGVDLNWGIAG---DGSLICSNDSNLMKEACGISCAPFPPGCMFM-NGTG 196 (253)
Q Consensus 139 ~~~~l~~aRD~~G~rPLyyg~~~---dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~-~~~g 196 (253)
.++++++|||+|+||||||..+ ++.++||||.++|.....+.+++++||+++. +++|
T Consensus 175 -~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g 235 (501)
T PRK09246 175 -GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITEDG 235 (501)
T ss_pred -CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEECCC
Confidence 3679999999999999999873 3479999999999987777789999999865 4466
No 28
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.97 E-value=5.4e-30 Score=252.15 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=144.8
Q ss_pred hHHHHHHHHHhHhcCCCCccEEE---------------------------eCCeEEEEEeCCC-----CCCCCceEEeCC
Q 025395 26 SKSRQEIAEIFQILWPETILCNI---------------------------SNGNFMGLSHENE-----SPLHPRSIVVMD 73 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~---------------------------~~~~~lgh~rl~~-----~~~~QP~~~~~~ 73 (253)
...+..|+.+|+|||||+.|++. .++++|||+||++ ..+.||+...++
T Consensus 14 ~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~ 93 (604)
T PRK00331 14 AEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWATHGKPTERNAHPHTDCSG 93 (604)
T ss_pred HHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCCCCCCccccCCccccCCC
Confidence 46788999999999999999886 3468999999983 357999987778
Q ss_pred cEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC---CCHHHHhcccccceEEEEEeCCC-CEEEE
Q 025395 74 DIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP---YPPDQVVKDLQGKFAFILFDAKS-HTLFA 145 (253)
Q Consensus 74 ~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~---~g~~~~l~~L~G~FAfvi~D~~~-~~l~~ 145 (253)
+++++|||+|||+++||++|.. |.+.+|+|+|+++|.+..+.|. ..+.+++++|+|+|||++||..+ +++++
T Consensus 94 ~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~d~~~~~~l~~ 173 (604)
T PRK00331 94 RIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDKDEPDTIVA 173 (604)
T ss_pred CEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEEecCCCCEEEE
Confidence 9999999999999999999953 8899999999999987433231 22457999999999999999886 89999
Q ss_pred EEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEE-eCCceEEEe
Q 025395 146 ARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFM-NGTGLMSFV 201 (253)
Q Consensus 146 aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~y~ 201 (253)
+||+ |||||+.. ++.++||||.++|...+.+ +.+++||+++. +++|++.+.
T Consensus 174 ~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~pg~~~~i~~~~~~~~~ 225 (604)
T PRK00331 174 ARNG---SPLVIGLG-EGENFLASDALALLPYTRR-VIYLEDGEIAVLTRDGVEIFD 225 (604)
T ss_pred EECC---CceEEEEc-CCeEEEEECHHHHHHhcCE-EEEECCCeEEEEECCeEEEEe
Confidence 9995 99999987 5679999999999988876 69999999865 457766554
No 29
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.97 E-value=1.8e-29 Score=240.06 Aligned_cols=172 Identities=17% Similarity=0.091 Sum_probs=141.5
Q ss_pred hHHHHHHHHHhHhcCCCCccEEE---------------------------eCCeEEEEEeCCC-----CCCCCceEE-eC
Q 025395 26 SKSRQEIAEIFQILWPETILCNI---------------------------SNGNFMGLSHENE-----SPLHPRSIV-VM 72 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~---------------------------~~~~~lgh~rl~~-----~~~~QP~~~-~~ 72 (253)
...+..++.+|+|||+|+.|+.. .++++|||+|+++ ..+.||+.. ..
T Consensus 14 ~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~G~~~~~n~QPf~~~~~ 93 (442)
T TIGR01134 14 ASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTAGSSSLSNAQPFVVNSP 93 (442)
T ss_pred HHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCCCCCCccCCCCEEEeCC
Confidence 45677899999999999999874 2568999999983 257999974 34
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhh-cCC--CCHHHHhcccccceEEEEEeCCCCEEEE
Q 025395 73 DDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRD-RAP--YPPDQVVKDLQGKFAFILFDAKSHTLFA 145 (253)
Q Consensus 73 ~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~-~g~--~g~~~~l~~L~G~FAfvi~D~~~~~l~~ 145 (253)
++++++|||+|+|+++|+++|.. |.+.+|+|+|+++|.+... .+. ..+.+++++|+|.|||+++|. +++++
T Consensus 94 ~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~falvi~~~--~~L~a 171 (442)
T TIGR01134 94 GGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIMIG--DGLIA 171 (442)
T ss_pred CCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCccceEEEEEC--CEEEE
Confidence 56999999999999999999853 8899999999999986221 111 124569999999999999975 79999
Q ss_pred EEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEe-CCceEEE
Q 025395 146 ARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMN-GTGLMSF 200 (253)
Q Consensus 146 aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~-~~g~~~y 200 (253)
+||++|+|||||+.. ++.++||||.++|.....+.+++++||+++.. ++|++++
T Consensus 172 ~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~~~ 226 (442)
T TIGR01134 172 VRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLESR 226 (442)
T ss_pred EECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEEEE
Confidence 999999999999987 56799999999998655566899999999764 4666653
No 30
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.97 E-value=6.4e-30 Score=251.79 Aligned_cols=171 Identities=16% Similarity=0.127 Sum_probs=143.5
Q ss_pred hHHHHHHHHHhHhcCCCCccEEE---------------------------eCCeEEEEEeCCC-----CCCCCceEEeCC
Q 025395 26 SKSRQEIAEIFQILWPETILCNI---------------------------SNGNFMGLSHENE-----SPLHPRSIVVMD 73 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~---------------------------~~~~~lgh~rl~~-----~~~~QP~~~~~~ 73 (253)
...+..|+.+|+|||||+.|++. .+.++|||+||++ ..+.||+...++
T Consensus 13 ~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~ 92 (607)
T TIGR01135 13 VPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATHGKPTEENAHPHTDEGG 92 (607)
T ss_pred HHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCCCCCCccCCCCcCcCCC
Confidence 46788999999999999999887 3467999999983 357999987778
Q ss_pred cEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC---CCHHHHhcccccceEEEEEeCCC-CEEEE
Q 025395 74 DIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP---YPPDQVVKDLQGKFAFILFDAKS-HTLFA 145 (253)
Q Consensus 74 ~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~---~g~~~~l~~L~G~FAfvi~D~~~-~~l~~ 145 (253)
+++++|||+|||+.+||++|.. |.+.+|+|+|+++|....+.|. .++.+++++|+|+|||++||..+ +++++
T Consensus 93 ~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~l~~ 172 (607)
T TIGR01135 93 RIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPETLVA 172 (607)
T ss_pred CEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEEecCCCCEEEE
Confidence 8999999999999999999963 8899999999999987433221 23447999999999999999875 56999
Q ss_pred EEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEe-CCceEEEe
Q 025395 146 ARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMN-GTGLMSFV 201 (253)
Q Consensus 146 aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~-~~g~~~y~ 201 (253)
+||+ |||||+.. ++.++||||.++|...+.+ +.+++||+++.. .+|+..|.
T Consensus 173 ~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~l~pg~~~~~~~~~~~~~~ 224 (607)
T TIGR01135 173 ARSG---SPLIVGLG-DGENFVASDVTALLPVTRR-VIYLEDGDIAILTRDGVRIYN 224 (607)
T ss_pred EECC---CceEEEEC-CCeEEEEEChHHHHhhCCE-EEEeCCCeEEEEECCeeEEEe
Confidence 9994 99999986 5689999999999988866 679999998764 46666554
No 31
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.97 E-value=5.3e-30 Score=219.72 Aligned_cols=122 Identities=21% Similarity=0.227 Sum_probs=105.0
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEE
Q 025395 72 MDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAAR 147 (253)
Q Consensus 72 ~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aR 147 (253)
.+++++++||||||+.+|+++|.. |.+.+|+|+|+++|++ ||.+ ++++|+|+|||+|||.. ++|++||
T Consensus 49 ~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~------~G~~-~l~~L~G~FAfai~D~~-~~L~laR 120 (199)
T cd01909 49 SETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTR------LGLH-AFRLAEGDFCFFIEDGN-GRLTLAT 120 (199)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHH------HhHH-HHHHcCEEEEEEEEcCC-CEEEEEE
Confidence 457999999999999999999854 7899999999999998 8875 99999999999999999 9999999
Q ss_pred eCCCCceEEEEEECCCeEEEEeCchhhhhhc-----------------CceeEEeCCCeEEEeC-C----c---eEEEee
Q 025395 148 DCDGGVDLNWGIAGDGSLICSNDSNLMKEAC-----------------GISCAPFPPGCMFMNG-T----G---LMSFVH 202 (253)
Q Consensus 148 D~~G~rPLyyg~~~dg~~~faSe~~aL~~~~-----------------~~~i~~~ppG~~~~~~-~----g---~~~y~~ 202 (253)
||+|+|||||... +.++||||+|+|++.. .+.|..+||||++..+ + + ..+||.
T Consensus 121 Dr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~~~~g~~~~~~~~~~yW~ 198 (199)
T cd01909 121 DHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVLTFDGGSYGTAESRRTWT 198 (199)
T ss_pred CCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEEEEeeCCcccceEEEEEeec
Confidence 9999999999875 6899999999997542 2348999999996432 2 2 567876
Q ss_pred c
Q 025395 203 P 203 (253)
Q Consensus 203 ~ 203 (253)
|
T Consensus 199 p 199 (199)
T cd01909 199 P 199 (199)
T ss_pred C
Confidence 5
No 32
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.97 E-value=1.2e-29 Score=218.01 Aligned_cols=162 Identities=22% Similarity=0.254 Sum_probs=137.9
Q ss_pred HHHHHHhHhcCCCCccEEEeC---------------------------CeEEEEEeCCC-----CCCCCceEEeCCcEEE
Q 025395 30 QEIAEIFQILWPETILCNISN---------------------------GNFMGLSHENE-----SPLHPRSIVVMDDIFC 77 (253)
Q Consensus 30 ~~ml~~l~hRGpd~~g~~~~~---------------------------~~~lgh~rl~~-----~~~~QP~~~~~~~~~l 77 (253)
..|+..+.|||||+.|++... .++|+|+|+++ ..+.||+....+++++
T Consensus 21 ~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at~g~~~~~n~hPf~~~~~~~~~ 100 (220)
T cd00352 21 LRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIAL 100 (220)
T ss_pred HHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeeecCCCCCCCCCCcCcCCCCEEE
Confidence 579999999999999988754 78999999983 3789999876678999
Q ss_pred EEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC--CCHHHHhcccccceEEEEEeCCCCEEEEEEeCCC
Q 025395 78 MFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP--YPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDG 151 (253)
Q Consensus 78 v~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~--~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G 151 (253)
+|||+|+|+.+|+++|.. +.+.+|+|+++++|....+.+. ..+.+++++++|.|+|+++|..+++++++||+.|
T Consensus 101 ~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~~l~~~rd~~G 180 (220)
T cd00352 101 VHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARDRFG 180 (220)
T ss_pred EECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccEEEEEEECCCCEEEEEECCCC
Confidence 999999999999998863 7889999999999987221110 1135699999999999999998899999999999
Q ss_pred CceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEE
Q 025395 152 GVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMF 191 (253)
Q Consensus 152 ~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~ 191 (253)
.+||||+...++.++||||..++...+.+.+.++|||+++
T Consensus 181 ~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 181 IRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred CCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 9999999973578999999999988774458999999863
No 33
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.96 E-value=2e-29 Score=201.12 Aligned_cols=117 Identities=21% Similarity=0.314 Sum_probs=73.5
Q ss_pred EEeCC---CCCCCCceE-EeCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCCCCHHHHhccc
Q 025395 56 LSHEN---ESPLHPRSI-VVMDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAPYPPDQVVKDL 127 (253)
Q Consensus 56 h~rl~---~~~~~QP~~-~~~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~~g~~~~l~~L 127 (253)
|+||+ ...+.||++ +.++++++++||+|||+++|+++|.. +.+.+|+|+++++|+++.+ ++. +++++|
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~---~~~-~~~~~l 76 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYRE---WGE-DFLKRL 76 (125)
T ss_dssp ------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH------HGG-GGGGT-
T ss_pred CcccccccccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHH---HHH-HHHHhC
Confidence 88988 358899998 67788999999999999999999965 6889999999999985222 333 599999
Q ss_pred ccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhh
Q 025395 128 QGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKE 176 (253)
Q Consensus 128 ~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~ 176 (253)
+|.|||++||+.++++++||||+|+|||||+..+++.++||||+++|++
T Consensus 77 ~G~fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 77 DGPFAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp -EEEEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred CceEEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 9999999999998999999999999999999985368999999999864
No 34
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.96 E-value=2.2e-28 Score=242.35 Aligned_cols=172 Identities=17% Similarity=0.108 Sum_probs=144.1
Q ss_pred chHHHHHHHHHhHhcCCCCccEEEe----------------------------------CCeEEEEEeCCC-----CCCC
Q 025395 25 KSKSRQEIAEIFQILWPETILCNIS----------------------------------NGNFMGLSHENE-----SPLH 65 (253)
Q Consensus 25 ~~~~~~~ml~~l~hRGpd~~g~~~~----------------------------------~~~~lgh~rl~~-----~~~~ 65 (253)
....+..++.+|+|||+|+.|+... ++++|||+||++ ..+.
T Consensus 36 ~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~ 115 (640)
T PTZ00295 36 ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGIAHTRWATHGGKTDENA 115 (640)
T ss_pred hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEEEEeccccCCCCCcCCC
Confidence 3567889999999999999998862 135999999983 3579
Q ss_pred CceEEeCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC---CCHHHHhcccccceEEEEEeC
Q 025395 66 PRSIVVMDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP---YPPDQVVKDLQGKFAFILFDA 138 (253)
Q Consensus 66 QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~---~g~~~~l~~L~G~FAfvi~D~ 138 (253)
||+...+++++++|||+|+|+++||++|.. |.+.+|+|+|+++|....+.|. ..+.+++++|+|+|||+++|.
T Consensus 116 qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~~~ 195 (640)
T PTZ00295 116 HPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKSAISRLQGTWGLCIIHK 195 (640)
T ss_pred CCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhceEEEEEe
Confidence 999876789999999999999999999853 8999999999999975433331 124568999999999999997
Q ss_pred C-CCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEe-CCceEEEe
Q 025395 139 K-SHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMN-GTGLMSFV 201 (253)
Q Consensus 139 ~-~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~-~~g~~~y~ 201 (253)
. .++++++||+ ||||||.. ++.++||||.++|...+.+ +..++||+++.. ++|+..|.
T Consensus 196 ~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~pGei~~i~~~~~~~~~ 255 (640)
T PTZ00295 196 DNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNE-YISLKDGEIAELSLENVNDLY 255 (640)
T ss_pred CCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcE-EEEeCCCeEEEEECCeEEEEe
Confidence 6 4899999996 99999987 5679999999999988887 567999999764 56788776
No 35
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.94 E-value=4e-26 Score=212.63 Aligned_cols=174 Identities=18% Similarity=0.120 Sum_probs=144.8
Q ss_pred chHHHHHHHHHhHhcCCCCccEEEeC----------------------------CeEEEEEeCCC-----CCCCCceEEe
Q 025395 25 KSKSRQEIAEIFQILWPETILCNISN----------------------------GNFMGLSHENE-----SPLHPRSIVV 71 (253)
Q Consensus 25 ~~~~~~~ml~~l~hRGpd~~g~~~~~----------------------------~~~lgh~rl~~-----~~~~QP~~~~ 71 (253)
..+.+...|..|+|||+++.|+.... +++|||+||++ ..+.||++..
T Consensus 18 a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYsTaG~s~~~naQP~~~~ 97 (470)
T COG0034 18 AAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVN 97 (470)
T ss_pred hHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeecCCCCcccccccceEEe
Confidence 36778899999999999999986421 45999999984 2678999865
Q ss_pred --CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhh-cCC-CCHHHHhcccccceEEEEEeCCCCEE
Q 025395 72 --MDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRD-RAP-YPPDQVVKDLQGKFAFILFDAKSHTL 143 (253)
Q Consensus 72 --~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~-~g~-~g~~~~l~~L~G~FAfvi~D~~~~~l 143 (253)
.+.++++|||.|.|..+||++|.. |.+++|+|+|++++.+-.. .+. .++..+++.++|.||+++... +.|
T Consensus 98 ~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v~G~ys~v~~~~--~~l 175 (470)
T COG0034 98 SPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVALIK--DGL 175 (470)
T ss_pred cCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhcCCcEEEEEEEC--CeE
Confidence 346999999999999999999975 8999999999999986221 111 235578899999999999987 699
Q ss_pred EEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEE--eC-CceEEE
Q 025395 144 FAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFM--NG-TGLMSF 200 (253)
Q Consensus 144 ~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~--~~-~g~~~y 200 (253)
+++|||.|+|||.+|...||.++||||.++|.....+.++++.||+.+. .+ +|+.++
T Consensus 176 ia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~~~g~~s~ 235 (470)
T COG0034 176 IAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESK 235 (470)
T ss_pred EEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEEEecCceeEEE
Confidence 9999999999999999866779999999999999998899999999865 33 455543
No 36
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.94 E-value=1.1e-26 Score=187.59 Aligned_cols=122 Identities=19% Similarity=0.252 Sum_probs=108.2
Q ss_pred CCCccE--EEeCCeEEEEEeCCC-----CCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHH
Q 025395 41 PETILC--NISNGNFMGLSHENE-----SPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAY 109 (253)
Q Consensus 41 pd~~g~--~~~~~~~lgh~rl~~-----~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly 109 (253)
||..++ +..+.++|||+|+++ ..+.||+...+++++++|||+|+|+.+|+++|.. +.+.+|+|+|++++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li 80 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALI 80 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHH
Confidence 677777 778899999999982 3456999666788999999999999999999975 78899999999999
Q ss_pred HHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeC
Q 025395 110 KVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSND 170 (253)
Q Consensus 110 ~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe 170 (253)
++ +| .+++++|+|.|+|++++...++++++||+.|.|||||+.. ++.++||||
T Consensus 81 ~~------~g-~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 81 HR------WG-EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HH------HH-HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 76 55 4588999999999999988899999999999999999998 678999998
No 37
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.93 E-value=3.5e-25 Score=220.15 Aligned_cols=174 Identities=14% Similarity=0.030 Sum_probs=142.1
Q ss_pred chHHHHHHHHHhHhcCCCCccEEEe-----------------------------------------------------CC
Q 025395 25 KSKSRQEIAEIFQILWPETILCNIS-----------------------------------------------------NG 51 (253)
Q Consensus 25 ~~~~~~~ml~~l~hRGpd~~g~~~~-----------------------------------------------------~~ 51 (253)
....+...|.+|+|||.|+.|+.+. ++
T Consensus 19 ~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~~~~~~~~~~~~~~~~~g~ 98 (670)
T PTZ00394 19 ILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVFSEAVAATLPPMDATTSHH 98 (670)
T ss_pred HHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHhcchhhhhccccccCCCCC
Confidence 4577889999999999999987654 13
Q ss_pred eEEEEEeCCC-----CCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhh-cCC----
Q 025395 52 NFMGLSHENE-----SPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRD-RAP---- 117 (253)
Q Consensus 52 ~~lgh~rl~~-----~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~-~g~---- 117 (253)
++|||+||++ ..+.||+.+.++++++||||+|||+.+||++|.. |.+.+|+|+|+++++.+.+ .|.
T Consensus 99 ~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~~~~~ 178 (670)
T PTZ00394 99 VGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHNFA 178 (670)
T ss_pred EEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCCCCHH
Confidence 6999999983 3678999887889999999999999999999964 9999999999998765332 231
Q ss_pred CCHHHHhcccccceEEEEEeCC-CCEEEEEEeCCCCceEEEEEECC--------------------CeEEEEeCchhhhh
Q 025395 118 YPPDQVVKDLQGKFAFILFDAK-SHTLFAARDCDGGVDLNWGIAGD--------------------GSLICSNDSNLMKE 176 (253)
Q Consensus 118 ~g~~~~l~~L~G~FAfvi~D~~-~~~l~~aRD~~G~rPLyyg~~~d--------------------g~~~faSe~~aL~~ 176 (253)
..+.+++++|+|+|||++.+.. .++++++||+ +||++|..++ +.++|||+..+|..
T Consensus 179 ~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~a~~~ 255 (670)
T PTZ00394 179 DLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVNSFAE 255 (670)
T ss_pred HHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChHHHHH
Confidence 1234799999999999998643 4899999997 9999999742 47999999999999
Q ss_pred hcCceeEEeCCCeEEEeCCceEEEee
Q 025395 177 ACGISCAPFPPGCMFMNGTGLMSFVH 202 (253)
Q Consensus 177 ~~~~~i~~~ppG~~~~~~~g~~~y~~ 202 (253)
.+.+ +..|++|+++...+|..++++
T Consensus 256 ~t~~-~~~l~dg~~~~~~~~~~~~~~ 280 (670)
T PTZ00394 256 YTRE-VVFLEDGDIAHYCDGALRFYN 280 (670)
T ss_pred hhce-EEEecCCeEEEEECCEEEEEe
Confidence 9988 689999999766555334443
No 38
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.93 E-value=4.3e-25 Score=219.99 Aligned_cols=173 Identities=12% Similarity=0.045 Sum_probs=140.2
Q ss_pred chHHHHHHHHHhHhcCCCCccEEEe------------------------------------------CCeEEEEEeCCC-
Q 025395 25 KSKSRQEIAEIFQILWPETILCNIS------------------------------------------NGNFMGLSHENE- 61 (253)
Q Consensus 25 ~~~~~~~ml~~l~hRGpd~~g~~~~------------------------------------------~~~~lgh~rl~~- 61 (253)
....+...|.+|+|||.|+.|+.+. ++++|||+||++
T Consensus 19 ~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~~~~~~g~~~IGH~R~at~ 98 (680)
T PLN02981 19 ILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNLDLVFENHAGIAHTRWATH 98 (680)
T ss_pred HHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhccccccccccCCCCcEEEEEcccccC
Confidence 3677889999999999999998862 247999999983
Q ss_pred ----CCCCCceEEe-CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhh-hcCC--------CCHHHH
Q 025395 62 ----SPLHPRSIVV-MDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLR-DRAP--------YPPDQV 123 (253)
Q Consensus 62 ----~~~~QP~~~~-~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~-~~g~--------~g~~~~ 123 (253)
..+.||+... .+.+++||||+|+|+.+||++|.. |.+.+|+|+|++++.+.. ..|. ..+.++
T Consensus 99 g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~a~~~~ 178 (680)
T PLN02981 99 GPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEEGDVTFSQVVMEV 178 (680)
T ss_pred CCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHH
Confidence 3578999764 367999999999999999999864 899999999999965422 2221 123468
Q ss_pred hcccccceEEEEEeCC-CCEEEEEEeCCCCceEEEEEEC--C---------------------CeEEEEeCchhhhhhcC
Q 025395 124 VKDLQGKFAFILFDAK-SHTLFAARDCDGGVDLNWGIAG--D---------------------GSLICSNDSNLMKEACG 179 (253)
Q Consensus 124 l~~L~G~FAfvi~D~~-~~~l~~aRD~~G~rPLyyg~~~--d---------------------g~~~faSe~~aL~~~~~ 179 (253)
+++|+|+|||++++.. .+++|++||+ +||++|..+ + +.++||||.++|...+.
T Consensus 179 ~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSe~~al~~~~~ 255 (680)
T PLN02981 179 MRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFFLASDASAVVEHTK 255 (680)
T ss_pred HHhccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEEEEeCHHHHHHhcC
Confidence 9999999999999966 3899999995 999999873 1 36899999999998866
Q ss_pred ceeEEeCCCeEEEe-CCceEEEe
Q 025395 180 ISCAPFPPGCMFMN-GTGLMSFV 201 (253)
Q Consensus 180 ~~i~~~ppG~~~~~-~~g~~~y~ 201 (253)
. +..++||+++.. ++|+..|.
T Consensus 256 ~-~~~l~~gei~~i~~~~~~~~~ 277 (680)
T PLN02981 256 R-VLVIEDNEVVHLKDGGVGIYK 277 (680)
T ss_pred E-EEEECCCeEEEEECCeEEEEe
Confidence 5 799999999765 46666654
No 39
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.92 E-value=4.9e-24 Score=194.15 Aligned_cols=167 Identities=17% Similarity=0.155 Sum_probs=137.4
Q ss_pred HHHHHhHhcCCCCccEEEe----------------------------CCeEEEEEeCCC-----CCCCCceEEe--CCcE
Q 025395 31 EIAEIFQILWPETILCNIS----------------------------NGNFMGLSHENE-----SPLHPRSIVV--MDDI 75 (253)
Q Consensus 31 ~ml~~l~hRGpd~~g~~~~----------------------------~~~~lgh~rl~~-----~~~~QP~~~~--~~~~ 75 (253)
...-+|+|||.|+.|+... ++++|||+||++ ..+.|||+.. -+.+
T Consensus 21 ~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~l 100 (474)
T KOG0572|consen 21 LGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSL 100 (474)
T ss_pred hhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecccccccccccccceEeeccCceE
Confidence 3347899999999998853 368999999984 3789999864 3669
Q ss_pred EEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHH-hhh----cCC-C--CHHHHhcccccceEEEEEeCCCCEE
Q 025395 76 FCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKV-LRD----RAP-Y--PPDQVVKDLQGKFAFILFDAKSHTL 143 (253)
Q Consensus 76 ~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~-~~~----~g~-~--g~~~~l~~L~G~FAfvi~D~~~~~l 143 (253)
+++|||++-|+++||+++.. +.|.||+|+|++++.. ..+ .++ | .+..+++.++|.||+++... ++|
T Consensus 101 avAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~~~~~~~g~Yslv~m~~--d~l 178 (474)
T KOG0572|consen 101 AVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMELLPGAYSLVFMTA--DKL 178 (474)
T ss_pred EEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHHHHHHhcCCceeEEEEEc--cEE
Confidence 99999999999999999975 8899999999999975 111 221 2 25579999999999999987 679
Q ss_pred EEEEeCCCCceEEEEEECCC----eEEEEeCchhhhhhcCceeEEeCCCeEEE-eCCceEE
Q 025395 144 FAARDCDGGVDLNWGIAGDG----SLICSNDSNLMKEACGISCAPFPPGCMFM-NGTGLMS 199 (253)
Q Consensus 144 ~~aRD~~G~rPLyyg~~~dg----~~~faSe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~ 199 (253)
|+.|||+|.|||.+|+.... .+++|||.++++.+..+...++.||+++. +..|.++
T Consensus 179 ~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~g~~s 239 (474)
T KOG0572|consen 179 YAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRNGVKS 239 (474)
T ss_pred EEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEecCCcee
Confidence 99999999999999996433 78999999999998877789999999864 4556443
No 40
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=2.4e-22 Score=194.40 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=142.3
Q ss_pred chHHHHHHHHHhHhcCCCCccEEEe---------------------------CCeEEEEEeCCC-----CCCCCceEEeC
Q 025395 25 KSKSRQEIAEIFQILWPETILCNIS---------------------------NGNFMGLSHENE-----SPLHPRSIVVM 72 (253)
Q Consensus 25 ~~~~~~~ml~~l~hRGpd~~g~~~~---------------------------~~~~lgh~rl~~-----~~~~QP~~~~~ 72 (253)
....+.+.|++|..||.|+.|+... +.++||||||++ ..+.+|+++
T Consensus 14 ~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWATHG~P~~~NAHPh~~-- 91 (597)
T COG0449 14 AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWATHGGPTRANAHPHSD-- 91 (597)
T ss_pred HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCceeeeeccccCCCCCCcCCCCCCCC--
Confidence 3677889999999999999998852 368999999983 478999865
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC-CCHHHHhcccccceEEEEEeCCC-CEEEEE
Q 025395 73 DDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP-YPPDQVVKDLQGKFAFILFDAKS-HTLFAA 146 (253)
Q Consensus 73 ~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~-~g~~~~l~~L~G~FAfvi~D~~~-~~l~~a 146 (253)
++++|||||.|.|+.+||++|.. |.|++|+|+|.|++....+.+. ..+..++++|+|+||+++.|.+. +++++|
T Consensus 92 ~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~a 171 (597)
T COG0449 92 GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAA 171 (597)
T ss_pred CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEecCCCCeEEEE
Confidence 88999999999999999999974 9999999999999987544321 23557899999999999999986 799999
Q ss_pred EeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEE-eCCceE
Q 025395 147 RDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFM-NGTGLM 198 (253)
Q Consensus 147 RD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~ 198 (253)
|. ..||+.|.. ++..++||+.-+|+..+.+ +..+.+|.+.. +.+++.
T Consensus 172 r~---~sPL~iG~g-~~e~f~aSD~~a~l~~t~~-~~~l~dgd~~~~~~~~v~ 219 (597)
T COG0449 172 RK---GSPLVIGVG-EGENFLASDVSALLNFTRR-FVYLEEGDIAKLTTDGVS 219 (597)
T ss_pred cC---CCCeEEEec-CCcceEecChhhhhhhhce-EEEeCCCCEEEEECCcEE
Confidence 99 499999997 5778899999999998888 68999999844 455566
No 41
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.76 E-value=1.6e-17 Score=155.97 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=106.6
Q ss_pred CCeEEEEEeCCCC-----CCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC---------------------CCCCCHHH
Q 025395 50 NGNFMGLSHENES-----PLHPRSIVVMDDIFCMFIGTSENICELKRHYGL---------------------SRQATEAM 103 (253)
Q Consensus 50 ~~~~lgh~rl~~~-----~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~---------------------~~s~sD~e 103 (253)
+..+|+|+|++++ ..+||+. +++|||||+|+..+++.+.. ..+.||++
T Consensus 201 s~~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~ 274 (413)
T cd00713 201 SAFALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSA 274 (413)
T ss_pred EEEEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHH
Confidence 3689999999954 4789984 48999999999988876632 23589999
Q ss_pred HHHHHHHHhhhcCCCCHH-----------------------------HHhcccccceEEEEEeCCCCEEEEEEeCCCCce
Q 025395 104 VLIEAYKVLRDRAPYPPD-----------------------------QVVKDLQGKFAFILFDAKSHTLFAARDCDGGVD 154 (253)
Q Consensus 104 ~il~ly~~~~~~g~~g~~-----------------------------~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rP 154 (253)
++.++++.+...|. .+. .+++.++|.||+++.|. +.++++|||+|.||
T Consensus 275 ~ld~~le~l~~~g~-~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRP 351 (413)
T cd00713 275 SLDNVLELLVRSGR-SLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRP 351 (413)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcc
Confidence 99999976543331 111 45688999999999997 79999999999999
Q ss_pred EEEEEECCCeEEEEeCchhhhhhcCceeE---EeCCCeEEEe
Q 025395 155 LNWGIAGDGSLICSNDSNLMKEACGISCA---PFPPGCMFMN 193 (253)
Q Consensus 155 Lyyg~~~dg~~~faSe~~aL~~~~~~~i~---~~ppG~~~~~ 193 (253)
|+|+.++|+.++||||..+|.. ..+.+. ++.||+++..
T Consensus 352 l~~~~t~d~~~v~ASE~gal~~-~~~~V~~kg~l~PGe~v~i 392 (413)
T cd00713 352 ARYVITKDGLLIMSSEVGVVDV-PPEKVVEKGRLGPGEMLLV 392 (413)
T ss_pred eEEEEECCCEEEEEeCCcccCC-CcceeeecCCCCCCeEEEE
Confidence 9999987778999999999955 333354 7999998654
No 42
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.72 E-value=6e-17 Score=144.08 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=111.2
Q ss_pred CCeEEEEEeCCC-----CCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC-----CCCCCHHHHHHHHHHHhh-hcCC-
Q 025395 50 NGNFMGLSHENE-----SPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL-----SRQATEAMVLIEAYKVLR-DRAP- 117 (253)
Q Consensus 50 ~~~~lgh~rl~~-----~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~-----~~s~sD~e~il~ly~~~~-~~g~- 117 (253)
++++|+|+|+++ ..+.||+.. ++++++|||.|.|+++|+..+.. +.+.+|+|++++++.... +.++
T Consensus 80 ~~~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~ 157 (257)
T cd01908 80 SPLVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPL 157 (257)
T ss_pred ccEEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCc
Confidence 568999999983 378999976 48999999999999999988753 788999999999987632 2221
Q ss_pred ------CCHHHHhcccc-----cceEEEEEeCCCCEEEEEEeCCCCceEEEEEEC-----------------CCeEEEEe
Q 025395 118 ------YPPDQVVKDLQ-----GKFAFILFDAKSHTLFAARDCDGGVDLNWGIAG-----------------DGSLICSN 169 (253)
Q Consensus 118 ------~g~~~~l~~L~-----G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~-----------------dg~~~faS 169 (253)
..+.+.++.|+ |.|+|++.|. ++++++||+. ++||||+... ++.++|||
T Consensus 158 ~~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaS 234 (257)
T cd01908 158 DPAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVAS 234 (257)
T ss_pred chHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEe
Confidence 23456788888 7899999887 7899999988 8999999864 46899999
Q ss_pred CchhhhhhcCceeEEeCCCeEEEeCC
Q 025395 170 DSNLMKEACGISCAPFPPGCMFMNGT 195 (253)
Q Consensus 170 e~~aL~~~~~~~i~~~ppG~~~~~~~ 195 (253)
|.-+... .+.++|||+++..++
T Consensus 235 E~l~~~~----~w~~v~~ge~~~i~~ 256 (257)
T cd01908 235 EPLTDDE----GWTEVPPGELVVVSE 256 (257)
T ss_pred CCCCCCC----CceEeCCCEEEEEeC
Confidence 9987643 389999999977554
No 43
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.68 E-value=5.3e-16 Score=137.83 Aligned_cols=137 Identities=14% Similarity=0.143 Sum_probs=104.7
Q ss_pred CCeEEEEEeCCC------CCCCCceEEeCCcEEEEEEEEEcchH-----HHHHHhcC-----CCCCCHHHHHHHHHHHhh
Q 025395 50 NGNFMGLSHENE------SPLHPRSIVVMDDIFCMFIGTSENIC-----ELKRHYGL-----SRQATEAMVLIEAYKVLR 113 (253)
Q Consensus 50 ~~~~lgh~rl~~------~~~~QP~~~~~~~~~lv~nGeI~N~~-----eL~~~l~~-----~~s~sD~e~il~ly~~~~ 113 (253)
..++|+|+|+++ ..+.||+.. ++++++|||.|.|++ +|+++|.. +.+.+|+|++++++....
T Consensus 82 s~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~ 159 (251)
T TIGR03442 82 SGCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRL 159 (251)
T ss_pred cceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHH
Confidence 457999999872 268999974 789999999999997 56665532 778999999999987632
Q ss_pred -hcCC----CCHHHHhcccccc-------eEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCce
Q 025395 114 -DRAP----YPPDQVVKDLQGK-------FAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGIS 181 (253)
Q Consensus 114 -~~g~----~g~~~~l~~L~G~-------FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~ 181 (253)
+..+ ..+.++++.|.|. |+|++.|. +++++.||+. ||||+.. ++.++||||. |.. ...
T Consensus 160 ~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l~~--~~~ 229 (251)
T TIGR03442 160 LENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKD-PEGVIVASEP--YDD--DPG 229 (251)
T ss_pred hhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEc-CCEEEEEeCC--cCC--CCC
Confidence 3211 2244677778888 99999997 8999999975 9999987 4578999998 322 125
Q ss_pred eEEeCCCeEEEeCCc-eE
Q 025395 182 CAPFPPGCMFMNGTG-LM 198 (253)
Q Consensus 182 i~~~ppG~~~~~~~g-~~ 198 (253)
++++|||+++...+| +.
T Consensus 230 W~~v~pge~v~i~~~~v~ 247 (251)
T TIGR03442 230 WQDVPDRHLLSVSEDDVT 247 (251)
T ss_pred ceEeCCCeEEEEECCcEE
Confidence 899999999765443 44
No 44
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.61 E-value=4.5e-15 Score=138.00 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=86.1
Q ss_pred CCeEEEEEeCCCC-----CCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC----CCC----------------CCHHHH
Q 025395 50 NGNFMGLSHENES-----PLHPRSIVVMDDIFCMFIGTSENICELKRHYGL----SRQ----------------ATEAMV 104 (253)
Q Consensus 50 ~~~~lgh~rl~~~-----~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~----~~s----------------~sD~e~ 104 (253)
+.++|+|+|++++ ..+||+. +++|||||.|...+++.+.. +.+ .||+|+
T Consensus 195 s~~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~ 268 (361)
T PF00310_consen 195 SHFAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEV 268 (361)
T ss_dssp BSEEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHH
T ss_pred ceEEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHH
Confidence 4799999999842 6799986 79999999999999988753 444 899999
Q ss_pred HHHHHHHhhhcC-----------C--C---------------CHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEE
Q 025395 105 LIEAYKVLRDRA-----------P--Y---------------PPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLN 156 (253)
Q Consensus 105 il~ly~~~~~~g-----------~--~---------------g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLy 156 (253)
+.++++.+...| | | -...+++.++|.|++++.|. +.++++|||.|.||+.
T Consensus 269 l~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GLRP~~ 346 (361)
T PF00310_consen 269 LDNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGLRPLR 346 (361)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--S--E
T ss_pred HHHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCCcceE
Confidence 999988765555 0 1 02356888999999999987 6799999999999999
Q ss_pred EEEECCCeEEEEeCc
Q 025395 157 WGIAGDGSLICSNDS 171 (253)
Q Consensus 157 yg~~~dg~~~faSe~ 171 (253)
|+.++|+.+++|||.
T Consensus 347 ~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 347 YGITEDGLVVLASEA 361 (361)
T ss_dssp EEEETTCEEEEESST
T ss_pred EEEECCCEEEEEeCC
Confidence 999978899999984
No 45
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.59 E-value=8.6e-15 Score=138.41 Aligned_cols=131 Identities=17% Similarity=0.170 Sum_probs=105.8
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEeC-----------------------------------CeEEEEEeCCC-----CCCC
Q 025395 26 SKSRQEIAEIFQILWPETILCNISN-----------------------------------GNFMGLSHENE-----SPLH 65 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~~-----------------------------------~~~lgh~rl~~-----~~~~ 65 (253)
-.++-.-+++|..||-|+.|+.+++ +++|+|+||++ ..+.
T Consensus 20 id~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH~gIAHTRWATHGvPs~~Ns 99 (670)
T KOG1268|consen 20 IDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISHCGIAHTRWATHGVPSEVNC 99 (670)
T ss_pred HHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeeeeeeeeeehhhcCCCCccCC
Confidence 4455567788999999999998742 58999999982 4778
Q ss_pred CceEE-eCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC--CC----HHHHhcccccceEEE
Q 025395 66 PRSIV-VMDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP--YP----PDQVVKDLQGKFAFI 134 (253)
Q Consensus 66 QP~~~-~~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~--~g----~~~~l~~L~G~FAfv 134 (253)
+|+.+ +.+.+++||||.|.|+++|++.|.. |.+.+|+|+++.++..+.+.-+ .. .+.++++|+|+|+++
T Consensus 100 HP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~F~~lv~~v~k~lEGaFalv 179 (670)
T KOG1268|consen 100 HPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGLL 179 (670)
T ss_pred CCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCcccHHHHHHHHHHHhhhHHHHH
Confidence 88865 3577999999999999999999875 9999999999999988766532 11 456899999999999
Q ss_pred EEeCC-CCEEEEEEeCCCCceEEEEE
Q 025395 135 LFDAK-SHTLFAARDCDGGVDLNWGI 159 (253)
Q Consensus 135 i~D~~-~~~l~~aRD~~G~rPLyyg~ 159 (253)
+-... .+++.+.|+ | .||..|.
T Consensus 180 fkS~hfP~e~Va~Rr--g-SPlliGv 202 (670)
T KOG1268|consen 180 FKSSHFPGEVVAARK--G-SPLLIGV 202 (670)
T ss_pred HHhhcCCcceeeecc--C-Ccceeee
Confidence 97655 578999998 4 6777655
No 46
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.52 E-value=1e-13 Score=129.31 Aligned_cols=148 Identities=19% Similarity=0.198 Sum_probs=105.3
Q ss_pred HHHHHHHHHhHhcCCCCccEEEeCC----e-EEEEEeCCC-CCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcCCCCCC
Q 025395 27 KSRQEIAEIFQILWPETILCNISNG----N-FMGLSHENE-SPLHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQAT 100 (253)
Q Consensus 27 ~~~~~ml~~l~hRGpd~~g~~~~~~----~-~lgh~rl~~-~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~~~s~s 100 (253)
....+|...+..||||.++-..... + +..+.-+-. ....||++. ++++++.|||||||-.- ..+..
T Consensus 18 ~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG~~t~Qpvv~-d~~~vfl~NGeIyn~~~-------s~~~~ 89 (520)
T KOG0573|consen 18 LISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRGYLTKQPVVE-DDRYVFLFNGEIYNGEK-------SDTLF 89 (520)
T ss_pred chhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEeeeeccCceec-ccceEEEecceeccCCC-------ccccc
Confidence 3456788999999998877443222 1 111111112 266899765 45588999999999652 34567
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCc
Q 025395 101 EAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGI 180 (253)
Q Consensus 101 D~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~ 180 (253)
|+.+|++....+.+.| ++.+.++.++|.|+|++||...++||+.||++|+|+|.|+..+.+..+..|... ...+
T Consensus 90 d~~~l~~~l~~~~e~~--~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~g----~~~~ 163 (520)
T KOG0573|consen 90 DTDILAEELSNLKESG--DILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTVG----TSGK 163 (520)
T ss_pred hHHHHHHHHhcCCccc--cHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeEEeeccc----cCCc
Confidence 9999999888654333 355689999999999999999999999999999999999998665444333321 1222
Q ss_pred eeEEeCCC
Q 025395 181 SCAPFPPG 188 (253)
Q Consensus 181 ~i~~~ppG 188 (253)
-|.++||+
T Consensus 164 ~i~e~~~~ 171 (520)
T KOG0573|consen 164 LIYEVPPV 171 (520)
T ss_pred cccccCch
Confidence 25688888
No 47
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.29 E-value=3.2e-11 Score=126.55 Aligned_cols=135 Identities=10% Similarity=0.085 Sum_probs=100.9
Q ss_pred CeEEEEEeCCCC-----CCCCceEEeCCcEEEEEEEEEcchHHHHHHhc-------C-------------CCCCCHHHHH
Q 025395 51 GNFMGLSHENES-----PLHPRSIVVMDDIFCMFIGTSENICELKRHYG-------L-------------SRQATEAMVL 105 (253)
Q Consensus 51 ~~~lgh~rl~~~-----~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~-------~-------------~~s~sD~e~i 105 (253)
..+|.|+|++++ ..+||+- .++|||||.-...-++.+. . ....||++.+
T Consensus 213 ~~al~HsRFSTNT~PsW~~AqPFR------~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa~l 286 (1485)
T PRK11750 213 AICVFHQRFSTNTLPRWPLAQPFR------YLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSL 286 (1485)
T ss_pred EEEEEECcCCCCCCCCCCcCCCce------eeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHHHH
Confidence 589999999843 6789972 4799999984432222111 0 2456899998
Q ss_pred HHHHHHhhhcCC-------------CC--------H-------HHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEE
Q 025395 106 IEAYKVLRDRAP-------------YP--------P-------DQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNW 157 (253)
Q Consensus 106 l~ly~~~~~~g~-------------~g--------~-------~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyy 157 (253)
-.+++-|...|. |. . ..+++-++|.||+++.|. +.+++.|||.|.|||.|
T Consensus 287 Dn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~g--~~i~A~~DrnGlRPlr~ 364 (1485)
T PRK11750 287 DNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTDG--RYAACNLDRNGLRPARY 364 (1485)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEeC--CEEEEecCCCCCccceE
Confidence 888876543331 21 0 125666899999999997 89999999999999999
Q ss_pred EEECCCeEEEEeCchhhhhhcCceeE--EeCCCeEEEe
Q 025395 158 GIAGDGSLICSNDSNLMKEACGISCA--PFPPGCMFMN 193 (253)
Q Consensus 158 g~~~dg~~~faSe~~aL~~~~~~~i~--~~ppG~~~~~ 193 (253)
+..+|+.+++|||..++.-...+.+. ++.||+++..
T Consensus 365 ~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~i 402 (1485)
T PRK11750 365 VITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVI 402 (1485)
T ss_pred EEEcCCEEEEEecceeeecccceeEEecccCCCeEEEE
Confidence 98877889999999998766667666 8999998654
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.67 E-value=3.3e-07 Score=82.46 Aligned_cols=139 Identities=18% Similarity=0.222 Sum_probs=71.3
Q ss_pred CeEEEEEeCCC-----CCCCCceEEe--CCcEEEEEEEEEcchHHHHHH-hcCCCCCCHHHHHHHHHHH-hhhcCC---C
Q 025395 51 GNFMGLSHENE-----SPLHPRSIVV--MDDIFCMFIGTSENICELKRH-YGLSRQATEAMVLIEAYKV-LRDRAP---Y 118 (253)
Q Consensus 51 ~~~lgh~rl~~-----~~~~QP~~~~--~~~~~lv~nGeI~N~~eL~~~-l~~~~s~sD~e~il~ly~~-~~~~g~---~ 118 (253)
.+.|+|.|.++ ..+.|||... .++.+.+|||.|.+++.++.. +. ....+|+|.+..++-. +.+.++ .
T Consensus 72 ~~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~ 150 (271)
T PF13230_consen 72 RLFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPP 150 (271)
T ss_dssp EEEEEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--H
T ss_pred CEEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccc
Confidence 47899999883 3789999753 357899999999998766522 22 5678999999988754 333221 0
Q ss_pred C-------HHHHhcccc--cceEEEEEeCCCCEEEEEEeC----CCCceEE-------------EE---EECCCeEEEEe
Q 025395 119 P-------PDQVVKDLQ--GKFAFILFDAKSHTLFAARDC----DGGVDLN-------------WG---IAGDGSLICSN 169 (253)
Q Consensus 119 g-------~~~~l~~L~--G~FAfvi~D~~~~~l~~aRD~----~G~rPLy-------------yg---~~~dg~~~faS 169 (253)
. +.+.++.+. |.++|++.|. ++|++.|+. .-+++.+ .. ...+..++|||
T Consensus 151 ~~~~~~~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaS 228 (271)
T PF13230_consen 151 ALEELFEALRELAKEINEYGSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVAS 228 (271)
T ss_dssp HHHHHHHHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEES
T ss_pred cHHHHHHHHHHHHHHhccCeeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEe
Confidence 0 223444444 7899999997 799999992 1122211 00 11245678888
Q ss_pred CchhhhhhcCceeEEeCCCeEEEeCCc
Q 025395 170 DSNLMKEACGISCAPFPPGCMFMNGTG 196 (253)
Q Consensus 170 e~~aL~~~~~~~i~~~ppG~~~~~~~g 196 (253)
|.=. . .+.+.++|+|+++..+.|
T Consensus 229 ePLt--~--~e~W~~vp~g~~l~~~~G 251 (271)
T PF13230_consen 229 EPLT--D--DEDWEPVPPGSLLVFRDG 251 (271)
T ss_dssp S--------SS--EE--SSEEEE----
T ss_pred ccCC--C--CCCeEEcCCCcEEEEecc
Confidence 8633 1 334899999999988877
No 49
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=98.51 E-value=3.4e-07 Score=85.18 Aligned_cols=136 Identities=12% Similarity=0.041 Sum_probs=102.2
Q ss_pred CCeEEEEEeCCCC-----CCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC---
Q 025395 50 NGNFMGLSHENES-----PLHPRSIVVMDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP--- 117 (253)
Q Consensus 50 ~~~~lgh~rl~~~-----~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~--- 117 (253)
+.++|+|+|.+++ ..+||+- .++|||||.++...++.+.. +++.+|+|.+..++-.+...|.
T Consensus 202 s~~~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs~ 275 (371)
T COG0067 202 SAIALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDSA 275 (371)
T ss_pred eeEEEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcch
Confidence 3689999999843 5788872 35999999998877766653 8899999999988854332221
Q ss_pred -------------CCHHHHhcccccceEEEEEe-CCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeE
Q 025395 118 -------------YPPDQVVKDLQGKFAFILFD-AKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCA 183 (253)
Q Consensus 118 -------------~g~~~~l~~L~G~FAfvi~D-~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~ 183 (253)
... .-...|.|.||++.-. ..++...+.+|+.+.+|.+-|-. +..+.++|+..|++..+
T Consensus 276 ~~dn~lE~l~~~G~~l-~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldrn----- 348 (371)
T COG0067 276 SLDNALELLLLGGRDL-YHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDRN----- 348 (371)
T ss_pred hhhHHHHHHHhcCcCc-hhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeeccC-----
Confidence 111 2455689999999854 22467889999999999999987 57889999999987643
Q ss_pred EeCCCeEEEeCCceE
Q 025395 184 PFPPGCMFMNGTGLM 198 (253)
Q Consensus 184 ~~ppG~~~~~~~g~~ 198 (253)
.+.|+.|+..++|..
T Consensus 349 gLrp~Ry~~t~d~~v 363 (371)
T COG0067 349 GLRPARYWITKDGEV 363 (371)
T ss_pred CCCcceEEEecCCEE
Confidence 477888888777733
No 50
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=97.59 E-value=0.00039 Score=58.39 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=63.1
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEe
Q 025395 73 DDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARD 148 (253)
Q Consensus 73 ~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD 148 (253)
.+-..-.-|.|||+.-|+.-.+. ....||+|+++.++.+ .|. .++.--+|+|.|.|=|+ +++|.+..|
T Consensus 47 ~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~------lG~-~aLsLAEGdfcffiE~k-ng~L~l~Td 118 (201)
T PF09147_consen 47 ERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTR------LGN-SALSLAEGDFCFFIEDK-NGELTLITD 118 (201)
T ss_dssp TTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHH------H-G-GGGGG--SSEEEEEEET-TSEEEEEE-
T ss_pred cCccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHH------hhh-hhhhhhcCceEEEEecC-CCcEEEEec
Confidence 33444556999999988766554 3456999999999987 333 48888999999999776 689999999
Q ss_pred CCCCceEEEEEECCCeEEEEeCchhhh
Q 025395 149 CDGGVDLNWGIAGDGSLICSNDSNLMK 175 (253)
Q Consensus 149 ~~G~rPLyyg~~~dg~~~faSe~~aL~ 175 (253)
+-|..|.|.-.+ +..++...+|-+-
T Consensus 119 s~G~~pv~lV~~--~~~WiTn~LK~V~ 143 (201)
T PF09147_consen 119 SRGFNPVYLVQS--KFIWITNSLKLVS 143 (201)
T ss_dssp SSSSS-EEEEES--SSEEEES-HHHHH
T ss_pred CCCCceEEEEec--CceEEecceEEEE
Confidence 999999998654 4677888777653
No 51
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.79 E-value=0.0098 Score=53.11 Aligned_cols=38 Identities=3% Similarity=-0.237 Sum_probs=31.1
Q ss_pred CeEEEEEeCCC-----CCCCCceEEe--CCcEEEEEEEEEcchHH
Q 025395 51 GNFMGLSHENE-----SPLHPRSIVV--MDDIFCMFIGTSENICE 88 (253)
Q Consensus 51 ~~~lgh~rl~~-----~~~~QP~~~~--~~~~~lv~nGeI~N~~e 88 (253)
.+.|+|.|.++ ..+.||++.. ...++++|||.|.+++.
T Consensus 71 ~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~ 115 (252)
T COG0121 71 ELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKL 115 (252)
T ss_pred cEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCccc
Confidence 58999999873 3788999865 34579999999999987
No 52
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.10 E-value=0.3 Score=51.88 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=46.8
Q ss_pred HhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCcee--EEeCCCeEEE
Q 025395 123 VVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISC--APFPPGCMFM 192 (253)
Q Consensus 123 ~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i--~~~ppG~~~~ 192 (253)
.++-.+|.==+.+-|. +.+-+.=||.|.||-=|..+.|+.++.|||.-.+.--..+.+ -.+-||-++.
T Consensus 406 ~MEpWDGPALl~FsDG--ry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~Mll 475 (2142)
T KOG0399|consen 406 QMEPWDGPALLTFSDG--RYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLL 475 (2142)
T ss_pred cCCCCCCceEEEecCC--ceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEE
Confidence 4677788755555555 667777899999999777777899999999866522111111 3577887643
No 53
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=72.12 E-value=7.6 Score=36.66 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=42.5
Q ss_pred HHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCch
Q 025395 122 QVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSN 172 (253)
Q Consensus 122 ~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~ 172 (253)
.+..-.+|.=+.+++|. +++-+-||+.|.||-=|..++|+.++++||..
T Consensus 322 ~l~epwdGpa~~~f~dg--se~gA~ldrngLrp~Ry~~t~d~~vv~~se~g 370 (371)
T COG0067 322 ALMEPWDGPADIVFTDG--SEEGAILDRNGLRPARYWITKDGEVVVASEAG 370 (371)
T ss_pred hCCCCccCCcceeEEee--eeeeeeeccCCCCcceEEEecCCEEEEEEecc
Confidence 36777899889999998 78899999999999977788889999999864
No 54
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=68.17 E-value=16 Score=25.52 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCC--ceEEE
Q 025395 100 TEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGG--VDLNW 157 (253)
Q Consensus 100 sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~--rPLyy 157 (253)
+|.+-++..++.++..|. +.-.-+ +.+|...+++++..|. |+ |||+.
T Consensus 12 ~~p~~l~~~lr~~RR~g~---------i~~~vs-i~~~~~~~ei~I~tD~-GR~~RPL~v 60 (63)
T PF04566_consen 12 SDPEELVKTLRNLRRSGK---------ISKEVS-IVYDIREKEIRINTDA-GRLCRPLFV 60 (63)
T ss_dssp SSHHHHHHHHHHHHHTTS---------S-TTSE-EEEETTTTEEEEE-SS-CEEEEEEEE
T ss_pred cCHHHHHHHHHHHhhccC---------CcceeE-EEEeccCCEEEEEccC-CcccceeEE
Confidence 455666777776555541 222334 4688889999999996 76 88876
No 55
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=44.46 E-value=73 Score=28.23 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=52.7
Q ss_pred EEEE--EEEcchHHHHHHhcC-CCCCCHHHHHHHHHHHhhhcCCCCHHHHhcc-------ccc-ceEEEEEeCCCCEEEE
Q 025395 77 CMFI--GTSENICELKRHYGL-SRQATEAMVLIEAYKVLRDRAPYPPDQVVKD-------LQG-KFAFILFDAKSHTLFA 145 (253)
Q Consensus 77 lv~n--GeI~N~~eL~~~l~~-~~s~sD~e~il~ly~~~~~~g~~g~~~~l~~-------L~G-~FAfvi~D~~~~~l~~ 145 (253)
..|| |.|||+.-..+.+.. -.+....+.++.++++ +.|. .+++.++ +.| -|.+.++++..++|++
T Consensus 93 ~~Fn~~~~~~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~--~FGS--~ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL~i 168 (234)
T KOG0876|consen 93 PKFNGAGHIYNHSFFWENLAPPGGGKPEGEALLKAIDS--SFGS--LEEFVKELNAAAAAVFGSGWLWLVYNKELKKLFI 168 (234)
T ss_pred hhcCCccccccchhhhhhccCCCCCCCchHHHHHHHHH--hhcC--HHHHHHHHHHHHHhhcCCceEEEEEcCCCCeEEE
Confidence 4455 578898876666654 2334444567777765 3442 2233333 334 5999999998889999
Q ss_pred EEeCCCCceEEEEE
Q 025395 146 ARDCDGGVDLNWGI 159 (253)
Q Consensus 146 aRD~~G~rPLyyg~ 159 (253)
.+-..-.-||+|..
T Consensus 169 ~~T~Na~~P~~~~t 182 (234)
T KOG0876|consen 169 LTTYNAGDPLVWTT 182 (234)
T ss_pred EecCCCCCCeeccC
Confidence 99998889999874
No 56
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=38.45 E-value=11 Score=30.43 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=18.9
Q ss_pred ccceEEEEEeCCCCEEEEEEeCCCCceEEE
Q 025395 128 QGKFAFILFDAKSHTLFAARDCDGGVDLNW 157 (253)
Q Consensus 128 ~G~FAfvi~D~~~~~l~~aRD~~G~rPLyy 157 (253)
+|.+++++++. ++++-..+ -|++|||=
T Consensus 10 e~~~S~Vv~~~--~~i~t~~~-rGv~pL~~ 36 (134)
T PF08973_consen 10 EENYSCVVLKD--GEIRTSDG-RGVKPLYD 36 (134)
T ss_dssp HTT-SEEEESS--SEEEEE---STTHHHHH
T ss_pred hCCceEEEEeC--CEEEEeCC-CChHHHHH
Confidence 57899999987 56666655 59999983
No 57
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=33.50 E-value=28 Score=28.93 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.8
Q ss_pred CcEEEEEEEEEcchHHHHH
Q 025395 73 DDIFCMFIGTSENICELKR 91 (253)
Q Consensus 73 ~~~~lv~nGeI~N~~eL~~ 91 (253)
+++.+||||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 6799999999999988764
No 58
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=33.29 E-value=29 Score=28.90 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.7
Q ss_pred CcEEEEEEEEEcchHHHHH
Q 025395 73 DDIFCMFIGTSENICELKR 91 (253)
Q Consensus 73 ~~~~lv~nGeI~N~~eL~~ 91 (253)
+++.+||||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 6799999999999988764
No 59
>PRK07225 DNA-directed RNA polymerase subunit B'; Validated
Probab=27.32 E-value=1.7e+02 Score=29.56 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=39.5
Q ss_pred EEEEEEEEcchHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCC--c
Q 025395 76 FCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGG--V 153 (253)
Q Consensus 76 ~lv~nGeI~N~~eL~~~l~~~~s~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~--r 153 (253)
.|..||.+.-+. .|.+-+++.++.++..|. |. .+.=++||...+++++..|. |+ |
T Consensus 6 ~VflNG~~vG~~------------~~~~~lv~~lR~lRr~g~---------i~-~~vsI~~~~~~~ei~I~tD~-GR~~R 62 (605)
T PRK07225 6 KVYVNGKLIGTH------------DDPEELVEEIREARRSGE---------IS-EEVNVSYKEETNEVIINTDA-GRARR 62 (605)
T ss_pred EEEECCEEEEEE------------CCHHHHHHHHHHHHccCC---------CC-CcEEEEEECCCCEEEEEccC-Cccce
Confidence 355677765432 345566666766544431 22 45556678778899999997 76 9
Q ss_pred eEEEEE
Q 025395 154 DLNWGI 159 (253)
Q Consensus 154 PLyyg~ 159 (253)
||+.-.
T Consensus 63 Pl~iv~ 68 (605)
T PRK07225 63 PLIVVE 68 (605)
T ss_pred eEEEEe
Confidence 998753
No 60
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=26.95 E-value=27 Score=26.08 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=16.0
Q ss_pred EEEEeCCCCceEEEEEECCC
Q 025395 144 FAARDCDGGVDLNWGIAGDG 163 (253)
Q Consensus 144 ~~aRD~~G~rPLyyg~~~dg 163 (253)
-..++.+|++|||-|+..|+
T Consensus 27 ~~~~~e~gIk~lyrGvskdD 46 (86)
T PF12594_consen 27 QAMHKEFGIKSLYRGVSKDD 46 (86)
T ss_pred HHHHHhcCCeEEEEecccCC
Confidence 34567899999999997654
No 61
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=23.75 E-value=5.1e+02 Score=22.83 Aligned_cols=67 Identities=16% Similarity=0.054 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCC------CCCCCCceEEeCCcEEEEEEEEEcchHHHHHHh
Q 025395 26 SKSRQEIAEIFQILWPETILCNISNGNFMGLSHEN------ESPLHPRSIVVMDDIFCMFIGTSENICELKRHY 93 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~------~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l 93 (253)
--+++-.++++.|.| -..|+....++.|+-.+-. ++.....++--+++++|+..|---+...|.+.+
T Consensus 18 LyQVEyAmeais~aG-t~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~a 90 (249)
T KOG0178|consen 18 LYQVEYAMEAISHAG-TCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYA 90 (249)
T ss_pred hHHHHHHHHHHhhhc-ceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHH
Confidence 345777888888888 5677777667777666432 233333444446789999999988877776443
No 62
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=21.99 E-value=91 Score=24.37 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=19.5
Q ss_pred CHHHHhcccccceEEEEEeCCCCEE
Q 025395 119 PPDQVVKDLQGKFAFILFDAKSHTL 143 (253)
Q Consensus 119 g~~~~l~~L~G~FAfvi~D~~~~~l 143 (253)
|+-+++...+|.|+|..|-.+...+
T Consensus 73 glVDFpa~~Ng~~~~lCWK~DE~~i 97 (123)
T COG4911 73 GLVDFPAIINGKPAFLCWKIDENDI 97 (123)
T ss_pred ccccchhhhCCceEEEEEecCCcce
Confidence 3446889999999999997765554
No 63
>TIGR03670 rpoB_arch DNA-directed RNA polymerase subunit B. This model represents the archaeal version of DNA-directed RNA polymerase subunit B (rpoB) and is observed in all archaeal genomes.
Probab=21.10 E-value=2.1e+02 Score=28.85 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCC--ceEEEE
Q 025395 101 EAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGG--VDLNWG 158 (253)
Q Consensus 101 D~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~--rPLyyg 158 (253)
|.+-++..++.++..| .| ..+.=+++|...+++++..|+ |+ |||+.-
T Consensus 13 ~~~~lv~~LR~lRr~g---------~i-~~~vsI~~~~~~~ei~I~tD~-GR~~RPl~iv 61 (599)
T TIGR03670 13 DPEELVEEVRKLRRSG---------KL-SQEVNVAYYEETNEVYINCDA-GRIRRPLIVV 61 (599)
T ss_pred CHHHHHHHHHHHhCcC---------CC-CCcEEEEEeCCCCEEEEEcCC-CccceeEEEe
Confidence 3445556666544333 13 345557788878999999997 76 999984
Done!