Query 025395
Match_columns 253
No_of_seqs 201 out of 1575
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:26:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 9.6E-40 3.3E-44 317.0 18.4 200 26-233 17-238 (553)
2 1xff_A D-fructose-6-, glucosam 100.0 2E-33 6.7E-38 246.1 20.5 170 26-202 13-224 (240)
3 1ao0_A Glutamine phosphoribosy 100.0 1.9E-33 6.7E-38 267.2 20.1 172 26-203 13-230 (459)
4 1ecf_A Glutamine phosphoribosy 100.0 1.6E-30 5.6E-35 249.7 21.7 170 26-196 13-236 (504)
5 2bpl_A Glucosamine--fructose-6 100.0 4.9E-30 1.7E-34 251.3 20.0 169 26-201 13-223 (608)
6 1jgt_A Beta-lactam synthetase; 100.0 5.7E-30 1.9E-34 246.4 14.1 175 38-233 41-253 (513)
7 1q15_A CARA; CMPR, (2S,5S)-5-c 100.0 4.9E-29 1.7E-33 239.4 8.1 171 50-233 26-250 (503)
8 3mdn_A Glutamine aminotransfer 99.9 3E-24 1E-28 191.6 12.4 143 51-200 82-255 (274)
9 1te5_A Conserved hypothetical 99.8 1.4E-20 4.8E-25 166.3 4.4 139 51-196 72-249 (257)
10 1ea0_A Glutamate synthase [NAD 99.7 6.7E-17 2.3E-21 168.6 13.2 161 25-193 144-393 (1479)
11 1ofd_A Ferredoxin-dependent gl 99.7 3.8E-16 1.3E-20 163.2 17.5 160 25-193 144-392 (1520)
12 1vk9_A Conserved hypothetical 41.1 5.4 0.00018 31.8 -0.1 27 128-157 27-53 (151)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=9.6e-40 Score=316.99 Aligned_cols=200 Identities=21% Similarity=0.282 Sum_probs=172.3
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCCC---CCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC---CCCC
Q 025395 26 SKSRQEIAEIFQILWPETILCNISNGNFMGLSHENE---SPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL---SRQA 99 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~~---~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~---~~s~ 99 (253)
...+.+|+++|+|||||+.|++..++++|||+||+. ..+.||+.+.+++++++|||+|||+.+|+++|.. |.+.
T Consensus 17 ~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~ 96 (553)
T 1ct9_A 17 RKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTG 96 (553)
T ss_dssp HHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSC
T ss_pred HHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEEEEEEEEEECHHHHHHHHhccCccCCC
Confidence 566889999999999999999999999999999982 3689999988888999999999999999999964 8899
Q ss_pred CHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcC
Q 025395 100 TEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACG 179 (253)
Q Consensus 100 sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~ 179 (253)
+|+|+|+++|++ ||.+ ++++|+|+|||++||..+++++++||++|+|||||+...++.++||||.++|...+.
T Consensus 97 sDtEvil~l~~~------~g~~-~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~~~~ 169 (553)
T 1ct9_A 97 SDCEVILALYQE------KGPE-FLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCR 169 (553)
T ss_dssp CTTHHHHHHHHH------HTTT-TGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTCS
T ss_pred CcHHHHHHHHHH------HHHH-HHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHhhcC
Confidence 999999999997 5654 999999999999999988999999999999999999854678999999999988766
Q ss_pred ceeEEeCCCeEEEeCCc-eEEEeecCCccc-cccCCC-C-------------hhhhhcceeEeeecCCCC
Q 025395 180 ISCAPFPPGCMFMNGTG-LMSFVHPLHKVR-AIVHED-D-------------DRQIGGVSFQVDLYTRLP 233 (253)
Q Consensus 180 ~~i~~~ppG~~~~~~~g-~~~y~~~~~~~~-~~~~~d-s-------------~~~~~~~~f~v~~~~~l~ 233 (253)
. |.+|||||++..++| +++||++.+... ..+..+ . ...+++++..|.+|||||
T Consensus 170 ~-i~~l~pG~~~~~~~g~~~~yw~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlD 238 (553)
T 1ct9_A 170 T-IKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLD 238 (553)
T ss_dssp E-EEECCTTEEEETTTCSEEECCCCGGGSHHHHTTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHH
T ss_pred C-EEEECCCeEEEEcCCcEEEeecCCccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEeCCCCcc
Confidence 5 899999999887666 899999875331 222211 1 134577899999999998
No 2
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=100.00 E-value=2e-33 Score=246.06 Aligned_cols=170 Identities=14% Similarity=0.090 Sum_probs=143.1
Q ss_pred hHHHHHHHHHhHhcCCCCccEE-E---------------------------eCCeEEEEEeCCC-----CCCCCceEEeC
Q 025395 26 SKSRQEIAEIFQILWPETILCN-I---------------------------SNGNFMGLSHENE-----SPLHPRSIVVM 72 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~-~---------------------------~~~~~lgh~rl~~-----~~~~QP~~~~~ 72 (253)
...+..|+++|+|||||+.|++ + .++++|||+||++ ..+.||+..
T Consensus 13 ~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qP~~~-- 90 (240)
T 1xff_A 13 AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHVS-- 90 (240)
T ss_dssp HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEEEEECCSSSCSSTTTSSCEEE--
T ss_pred HHHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccEEEEEEeccCCCCCCcccCCCccc--
Confidence 4678899999999999999998 6 3579999999983 258999977
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC---CCHHHHhcccccceEEEEEeCC-CCEEE
Q 025395 73 DDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP---YPPDQVVKDLQGKFAFILFDAK-SHTLF 144 (253)
Q Consensus 73 ~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~---~g~~~~l~~L~G~FAfvi~D~~-~~~l~ 144 (253)
++++++|||+|||+.+|+++|.. |.+.||+|+|+++|+.....|. ..+.+++++|+|+|||++||.. .++|+
T Consensus 91 ~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G~fa~~i~d~~~~~~l~ 170 (240)
T 1xff_A 91 EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLL 170 (240)
T ss_dssp TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEETTCTTCEE
T ss_pred CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccceEEEEEecCCCCEEE
Confidence 78999999999999999999853 8899999999999987432231 1133699999999999999975 68999
Q ss_pred EEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEeC-CceEEEee
Q 025395 145 AARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMNG-TGLMSFVH 202 (253)
Q Consensus 145 ~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~~-~g~~~y~~ 202 (253)
++||+ |||||+.. ++.++||||.++|...+.+ +.++|||+++..+ ++++.|..
T Consensus 171 ~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~l~pG~~~~i~~~~~~~~~~ 224 (240)
T 1xff_A 171 AARSG---SPLVIGLG-MGENFIASDQLALLPVTRR-FIFLEEGDIAEITRRSVNIFDK 224 (240)
T ss_dssp EEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCSE-EEECCTTCEEEECSSCEEEECT
T ss_pred EEECC---CceEEEEe-CCEEEEEECHHHHHhhCCe-EEEECCCEEEEEECCeEEEEeC
Confidence 99997 99999987 5679999999999888877 7999999998765 45666543
No 3
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=100.00 E-value=1.9e-33 Score=267.18 Aligned_cols=172 Identities=14% Similarity=0.120 Sum_probs=144.7
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEe---------------------------CCeEEEEEeCCC-----CCCCCceEE---
Q 025395 26 SKSRQEIAEIFQILWPETILCNIS---------------------------NGNFMGLSHENE-----SPLHPRSIV--- 70 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~---------------------------~~~~lgh~rl~~-----~~~~QP~~~--- 70 (253)
...+..|+.+|+|||||+.|++.. ++++|||+||++ ..+.||+..
T Consensus 13 ~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~igH~R~at~g~~~~~n~qP~~~~~~ 92 (459)
T 1ao0_A 13 PQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATAGGGGYENVQPLLFRSQ 92 (459)
T ss_dssp HHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEEEEEEECCC----CGGGSSSEEEBCT
T ss_pred HHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEEEEEEecCCCCCCCccCCCCceeccC
Confidence 455678999999999999998874 568999999983 258999987
Q ss_pred eCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC----CCHHHHhcccccceEEEEEeCCCCE
Q 025395 71 VMDDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP----YPPDQVVKDLQGKFAFILFDAKSHT 142 (253)
Q Consensus 71 ~~~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~----~g~~~~l~~L~G~FAfvi~D~~~~~ 142 (253)
.+++++++|||+|+|+.+|+++|.. |.+.+|+|+|+++|.+ .+. ..+.+++++|+|+|||++||. ++
T Consensus 93 ~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~---~~~~~~~~a~~~~~~~l~G~fa~~i~d~--~~ 167 (459)
T 1ao0_A 93 NNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKR---SGHFTLKDQIKNSLSMLKGAYAFLIMTE--TE 167 (459)
T ss_dssp TTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHT---CCCSSHHHHHHHHHTTCCEEEEEEEECS--SE
T ss_pred CCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHH---hccCCHHHHHHHHHHhhccceEEEEEeC--CE
Confidence 4578999999999999999999853 8999999999999986 110 013469999999999999994 89
Q ss_pred EEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEe-CCceE--EEeec
Q 025395 143 LFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMN-GTGLM--SFVHP 203 (253)
Q Consensus 143 l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~-~~g~~--~y~~~ 203 (253)
++++||++|+|||||+.. ++.++||||.++|.....+.+.++|||+++.. .+|++ +||.+
T Consensus 168 l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~~~~~~~~~~~~~ 230 (459)
T 1ao0_A 168 MIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGMKSERFSMN 230 (459)
T ss_dssp EEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEEEEEESCSS
T ss_pred EEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEECCceEEEecCCC
Confidence 999999999999999998 57899999999998875566899999999764 46644 56654
No 4
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.97 E-value=1.6e-30 Score=249.72 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=140.7
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEe----------------------------CCeEEEEEeCCC-----CCCCCceEEeC
Q 025395 26 SKSRQEIAEIFQILWPETILCNIS----------------------------NGNFMGLSHENE-----SPLHPRSIVVM 72 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~----------------------------~~~~lgh~rl~~-----~~~~QP~~~~~ 72 (253)
...+..|+..|+|||||+.|++.. ++++|||+||++ ..+.||++...
T Consensus 13 ~~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~~igH~R~sT~G~~~~~n~QP~~~~~ 92 (504)
T 1ecf_A 13 NQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNS 92 (504)
T ss_dssp HHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCBTTBCTTSCCSCEEECS
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCEEEEEEccCcCCCCCccccCCeEecc
Confidence 456889999999999999999864 368999999982 36899998643
Q ss_pred -CcEEEEEEEEEcchHHHHHHhc----C-CCCCCHHHHHHHHHHHhhh-cCC---------CCHHHHhcccccceEEEEE
Q 025395 73 -DDIFCMFIGTSENICELKRHYG----L-SRQATEAMVLIEAYKVLRD-RAP---------YPPDQVVKDLQGKFAFILF 136 (253)
Q Consensus 73 -~~~~lv~nGeI~N~~eL~~~l~----~-~~s~sD~e~il~ly~~~~~-~g~---------~g~~~~l~~L~G~FAfvi~ 136 (253)
++++++|||+|+|+.+|+++|. . |.+.||+|+|+++|....+ .|. ..+.+++++|+|+|||++|
T Consensus 93 ~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~~~~~~~l~G~fa~v~~ 172 (504)
T 1ecf_A 93 PYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAM 172 (504)
T ss_dssp SSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHCCEEEEEEEE
T ss_pred CCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHHHHhhhhcCccceEEEE
Confidence 5699999999999999999984 2 8899999999999986322 221 1133589999999999999
Q ss_pred eCCCCEEEEEEeCCCCceEEEEEEC--C--CeEEEEeCchhhhhhcCceeEEeCCCeEEE-eCCc
Q 025395 137 DAKSHTLFAARDCDGGVDLNWGIAG--D--GSLICSNDSNLMKEACGISCAPFPPGCMFM-NGTG 196 (253)
Q Consensus 137 D~~~~~l~~aRD~~G~rPLyyg~~~--d--g~~~faSe~~aL~~~~~~~i~~~ppG~~~~-~~~g 196 (253)
+.. ++|+++|||+|+|||||+... + +.++||||.++|.....+.+.+++||+++. +.+|
T Consensus 173 ~~~-~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe~v~i~~~g 236 (504)
T 1ecf_A 173 IIG-HGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITEEG 236 (504)
T ss_dssp ETT-TEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTC
T ss_pred EcC-CeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCeEEEEeCCC
Confidence 753 589999999999999999972 3 379999999999887777789999999865 4567
No 5
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.97 E-value=4.9e-30 Score=251.26 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=144.0
Q ss_pred hHHHHHHHHHhHhcCCCCccEEEe----------------------------CCeEEEEEeCCC-----CCCCCceEEeC
Q 025395 26 SKSRQEIAEIFQILWPETILCNIS----------------------------NGNFMGLSHENE-----SPLHPRSIVVM 72 (253)
Q Consensus 26 ~~~~~~ml~~l~hRGpd~~g~~~~----------------------------~~~~lgh~rl~~-----~~~~QP~~~~~ 72 (253)
...+..|+++|+|||||+.|++.. ++++|||+||++ ..+.||+.+
T Consensus 13 ~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~~igH~R~at~g~~~~~n~qP~~~-- 90 (608)
T 2bpl_A 13 AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHVS-- 90 (608)
T ss_dssp HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSEEEEEEECCCSSSCCGGGCSCEEE--
T ss_pred HHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCEEEEEEccCCCCCCCccCCCCccC--
Confidence 567899999999999999998864 568999999983 257899987
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHhhhcCC---CCHHHHhcccccceEEEEEeCCC-CEEE
Q 025395 73 DDIFCMFIGTSENICELKRHYGL----SRQATEAMVLIEAYKVLRDRAP---YPPDQVVKDLQGKFAFILFDAKS-HTLF 144 (253)
Q Consensus 73 ~~~~lv~nGeI~N~~eL~~~l~~----~~s~sD~e~il~ly~~~~~~g~---~g~~~~l~~L~G~FAfvi~D~~~-~~l~ 144 (253)
++++++|||+|+|+.+||++|.. |.+.||+|+|+++|....+.|. ..+.+++++|+|+|||++||... ++++
T Consensus 91 ~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~av~~~~~~l~G~fa~~i~d~~~~~~l~ 170 (608)
T 2bpl_A 91 EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLL 170 (608)
T ss_dssp TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCSSEEEEEEETTCTTCEE
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcCceEEEEEecCCCCEEE
Confidence 78999999999999999999853 8999999999999987433342 12446999999999999999987 8999
Q ss_pred EEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcCceeEEeCCCeEEEeC-CceEEEe
Q 025395 145 AARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMNG-TGLMSFV 201 (253)
Q Consensus 145 ~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~~-~g~~~y~ 201 (253)
++||+ |||||+.. ++.++||||.++|...+.+ +.+++||+++..+ +|++.|.
T Consensus 171 ~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~~-~~~l~~G~i~~i~~~~~~~~~ 223 (608)
T 2bpl_A 171 AARSG---SPLVIGLG-MGENFIASDQLALLPVTRR-FIFLEEGDIAEITRRSVNIFD 223 (608)
T ss_dssp EEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCCE-EEECCTTCEEEECSSCEEEEC
T ss_pred EEECC---CceEEEEe-CCeEEEEechHHHHhcCCe-EEEECCCeEEEEECCeEEEEe
Confidence 99996 99999997 5679999999999887766 7999999997655 5566654
No 6
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=99.96 E-value=5.7e-30 Score=246.42 Aligned_cols=175 Identities=16% Similarity=0.136 Sum_probs=136.1
Q ss_pred hcCCCCccEEEeCCeEEEEEeCCCCCCCCceEEeC----CcEEEEEEEEEcchHHHHHHhcC-CCCCCHHHHHHHHHHHh
Q 025395 38 ILWPETILCNISNGNFMGLSHENESPLHPRSIVVM----DDIFCMFIGTSENICELKRHYGL-SRQATEAMVLIEAYKVL 112 (253)
Q Consensus 38 hRGpd~~g~~~~~~~~lgh~rl~~~~~~QP~~~~~----~~~~lv~nGeI~N~~eL~~~l~~-~~s~sD~e~il~ly~~~ 112 (253)
+|||+..+.++... ...||+++.+ ++++++|||+|||+.+|+++|.. |.+.||+|+|+++|++
T Consensus 41 ~r~p~~~~~~~~~~-----------~~~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvil~l~~~- 108 (513)
T 1jgt_A 41 QGERSLAATLVHAP-----------SVAPDRAVARSLTGAPTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLER- 108 (513)
T ss_dssp TGGGSCEEEEEECT-----------TSCGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHH-
T ss_pred cCCCccccceeeCC-----------ccCCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHHHHHHHH-
Confidence 56777766555321 2378987654 78999999999999999999854 8999999999999997
Q ss_pred hhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhc--------------
Q 025395 113 RDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEAC-------------- 178 (253)
Q Consensus 113 ~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~-------------- 178 (253)
||.+ ++++|+|+|||++||.. +++++||++|+|||||+.. ++.++||||+++|...+
T Consensus 109 -----~g~~-~~~~l~G~fA~~i~d~~--~l~~aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t 179 (513)
T 1jgt_A 109 -----YDLH-AFRLVNGRFATVVRTGD--RVLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVA 179 (513)
T ss_dssp -----HGGG-GGGTCCEEEEEEEEETT--EEEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECS
T ss_pred -----HhHH-hHhhcCeeEEEEEEECC--EEEEEECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccc
Confidence 6664 99999999999999984 4999999999999999987 67899999999998876
Q ss_pred -CceeEEeCCCeEEEeC--Cc---eEEEeecCCccccc------cCC-----CC--hhhhhcceeEeeecCCCC
Q 025395 179 -GISCAPFPPGCMFMNG--TG---LMSFVHPLHKVRAI------VHE-----DD--DRQIGGVSFQVDLYTRLP 233 (253)
Q Consensus 179 -~~~i~~~ppG~~~~~~--~g---~~~y~~~~~~~~~~------~~~-----ds--~~~~~~~~f~v~~~~~l~ 233 (253)
.+.|..+||||++..+ +| ..+||++....... ..+ ++ ...+.+++..|.+|+|+|
T Consensus 180 ~~~~i~~l~pG~~l~i~~~~g~~~~~~yw~~~~~~~~~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlD 253 (513)
T 1jgt_A 180 GLTGVYQVPAGAVMDIDLGSGTAVTHRTWTPGLSRRILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGID 253 (513)
T ss_dssp SCSSCEECCTTEEEEEETTTTEEEEEECCCCCCSCBCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHH
T ss_pred cccceEEcCCCcEEEEEcCCCCEEEEeecCCcccccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHH
Confidence 2558999999997654 44 46888865421100 000 01 123456788999999998
No 7
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.95 E-value=4.9e-29 Score=239.40 Aligned_cols=171 Identities=11% Similarity=0.058 Sum_probs=138.2
Q ss_pred CCeEEEEEeCC--CCCCCCceEEeCCcEEEEEEEEEcchH---HHHHHhcC-CCCCCHHHHHHHHHHHhhhcCCCCHHHH
Q 025395 50 NGNFMGLSHEN--ESPLHPRSIVVMDDIFCMFIGTSENIC---ELKRHYGL-SRQATEAMVLIEAYKVLRDRAPYPPDQV 123 (253)
Q Consensus 50 ~~~~lgh~rl~--~~~~~QP~~~~~~~~~lv~nGeI~N~~---eL~~~l~~-~~s~sD~e~il~ly~~~~~~g~~g~~~~ 123 (253)
++++|||+||+ ...+.||+.+.+++++++ |+|||+. +|+++|.. |.+.||+|+|+++|++ ||.+ +
T Consensus 26 ~~~~igh~R~~t~~~~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g~f~s~sDtEvil~l~~~------~g~~-~ 96 (503)
T 1q15_A 26 KGEALSNGYLFIEQNGHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTR------LGAN-A 96 (503)
T ss_dssp EEEEETTEEEEEETTCCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHH------HCGG-G
T ss_pred CceeEeeeeEEEcCCCCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhCCCCCCChHHHHHHHHHH------HHHH-H
Confidence 57999999998 457899998877777777 9999999 99998864 7889999999999997 6654 9
Q ss_pred hcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCe-----------------EEEEeCchhhhhh-------cC
Q 025395 124 VKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGS-----------------LICSNDSNLMKEA-------CG 179 (253)
Q Consensus 124 l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~-----------------~~faSe~~aL~~~-------~~ 179 (253)
+++|+|+|||++||..++ ++++|||+|+|||||+.. ++. ++||||+++|... ..
T Consensus 97 l~~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T~~ 174 (503)
T 1q15_A 97 LALAEGDFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPV 174 (503)
T ss_dssp GGGCCSSEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCCSB
T ss_pred HHHcCEEEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCccc
Confidence 999999999999999888 999999999999999986 566 8999999999775 13
Q ss_pred ceeEEeCCCeEEEeC-Cc------eEEEeecCCccccccCCCC-----------------hhhhhcceeEeeecCCCC
Q 025395 180 ISCAPFPPGCMFMNG-TG------LMSFVHPLHKVRAIVHEDD-----------------DRQIGGVSFQVDLYTRLP 233 (253)
Q Consensus 180 ~~i~~~ppG~~~~~~-~g------~~~y~~~~~~~~~~~~~ds-----------------~~~~~~~~f~v~~~~~l~ 233 (253)
+.|..+|||+++..+ +| ..+||++....+ +...+ .....+++..+.+|+|+|
T Consensus 175 ~~v~~l~pG~~~~i~~~g~~~~~~~~~yw~~~~~~~--~~~~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlD 250 (503)
T 1q15_A 175 KNAQRLKPGAVHVLTHDSEGYSFVESRTLTTPASNQ--LLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLD 250 (503)
T ss_dssp TTEEECCSSEEEEEEECTTCCEEEEEEESCCCCCCS--CBCCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHH
T ss_pred CCeEEECCCeEEEEeCCCcccccceeeecCCccccc--ccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHH
Confidence 348999999997543 44 567888654221 11111 123456788999999998
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.91 E-value=3e-24 Score=191.56 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=106.5
Q ss_pred CeEEEEEeCCC-----CCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC------C---CCCCHHHHHHHHHHHhhhcC
Q 025395 51 GNFMGLSHENE-----SPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL------S---RQATEAMVLIEAYKVLRDRA 116 (253)
Q Consensus 51 ~~~lgh~rl~~-----~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~------~---~s~sD~e~il~ly~~~~~~g 116 (253)
.++|||+|+++ ..+.||+.. ++++++|||+|+|+.+||++|.. | .+.||+|+|+++|......+
T Consensus 82 ~~~igHvR~AT~g~~s~~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~~~~ 159 (274)
T 3mdn_A 82 GLFLSHVRASTGSCISRNNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEH 159 (274)
T ss_dssp EEEEEEC------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTTTTT
T ss_pred CEEEEEEccccCCCCcccCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhhhcC
Confidence 57999999983 368999986 78999999999999999998852 3 68999999999995411100
Q ss_pred -C-CCHHHHhcccccc-----------eEEEEEeCCCCEEEEEEeC-CCCceEEEEEECC--CeEEEEeCchhhhhhcCc
Q 025395 117 -P-YPPDQVVKDLQGK-----------FAFILFDAKSHTLFAARDC-DGGVDLNWGIAGD--GSLICSNDSNLMKEACGI 180 (253)
Q Consensus 117 -~-~g~~~~l~~L~G~-----------FAfvi~D~~~~~l~~aRD~-~G~rPLyyg~~~d--g~~~faSe~~aL~~~~~~ 180 (253)
+ ..+.+++++|+|. |+|+++|. ++|+++||+ +|++||+|+...+ +.++||||. |...+..
T Consensus 160 ~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~~~ 235 (274)
T 3mdn_A 160 DPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDEGD 235 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CCSC
T ss_pred CHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCCce
Confidence 0 1244689999998 99999986 799999998 9999977777643 689999999 4333344
Q ss_pred eeEEeCCCeEEEe-CCceEEE
Q 025395 181 SCAPFPPGCMFMN-GTGLMSF 200 (253)
Q Consensus 181 ~i~~~ppG~~~~~-~~g~~~y 200 (253)
+.++|||+++.. ++|+..+
T Consensus 236 -~~~v~pGeiv~i~~~~v~~~ 255 (274)
T 3mdn_A 236 -WTELRPGRMLTIGAEGAAER 255 (274)
T ss_dssp -CEECCSSEEEEEETTEEEEE
T ss_pred -EEEECcCEEEEEeCCeEEEE
Confidence 899999999765 4556654
No 9
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.80 E-value=1.4e-20 Score=166.27 Aligned_cols=139 Identities=12% Similarity=0.003 Sum_probs=105.4
Q ss_pred CeEEEEEeCCC-----CCCCCceEEe--CCcEEEEEEEEEcchHHHHHHhcCCCCCCHHHHHHHHHHH-hhhc-C--C--
Q 025395 51 GNFMGLSHENE-----SPLHPRSIVV--MDDIFCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKV-LRDR-A--P-- 117 (253)
Q Consensus 51 ~~~lgh~rl~~-----~~~~QP~~~~--~~~~~lv~nGeI~N~~eL~~~l~~~~s~sD~e~il~ly~~-~~~~-g--~-- 117 (253)
+++|||+|+++ ..+.||++.. .++++++|||.|.|+++ |.++..|.+.+|+|+|++++.. +.+. + +
T Consensus 72 ~~~IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~~~~~~s~TDSEvi~~li~~~~~~~~~~~~~~ 150 (257)
T 1te5_A 72 ETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPV 150 (257)
T ss_dssp EEEEEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCCSSCCSSCCHHHHHHHHHHHHHHHHCSSCCCH
T ss_pred cEEEEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhccCCcccCCHHHHHHHHHHHHHHHhcCCCchH
Confidence 47999999983 3689999865 46799999999999998 6654448999999999999976 3221 1 1
Q ss_pred CCHHHHhcccc------cceEEEEEeCCCCEEEEEEe----------CCCCceEEE-------EE---ECCCeEEEEeCc
Q 025395 118 YPPDQVVKDLQ------GKFAFILFDAKSHTLFAARD----------CDGGVDLNW-------GI---AGDGSLICSNDS 171 (253)
Q Consensus 118 ~g~~~~l~~L~------G~FAfvi~D~~~~~l~~aRD----------~~G~rPLyy-------g~---~~dg~~~faSe~ 171 (253)
..+.+++++|. |.|+|++.|. ++|+++|| |+|+|||+. +. ..+..++||||.
T Consensus 151 ~a~~~al~~l~~~~~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~ 228 (257)
T 1te5_A 151 EVLLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP 228 (257)
T ss_dssp HHHHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc
Confidence 12334566665 9999999987 89999999 999999975 31 113468899995
Q ss_pred hhhhhhcCceeEEeCCCeEEEeCCc
Q 025395 172 NLMKEACGISCAPFPPGCMFMNGTG 196 (253)
Q Consensus 172 ~aL~~~~~~~i~~~ppG~~~~~~~g 196 (253)
|.. .+.+.++|||+++..++|
T Consensus 229 --l~~--~~~wr~v~pGe~v~i~~~ 249 (257)
T 1te5_A 229 --LTD--NENWTLQQSGEWVLWWGG 249 (257)
T ss_dssp --SSS--SSSCEEECTTCEEEEETT
T ss_pred --cCC--CCCeeEeCCCEEEEEECC
Confidence 542 455899999999765544
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.70 E-value=6.7e-17 Score=168.58 Aligned_cols=161 Identities=12% Similarity=0.089 Sum_probs=123.6
Q ss_pred chHHHHHHHHHhHhcCCC----CccEEE-----------------------------eCCeEEEEEeCCCC-----CCCC
Q 025395 25 KSKSRQEIAEIFQILWPE----TILCNI-----------------------------SNGNFMGLSHENES-----PLHP 66 (253)
Q Consensus 25 ~~~~~~~ml~~l~hRGpd----~~g~~~-----------------------------~~~~~lgh~rl~~~-----~~~Q 66 (253)
....+..+.++++||+.+ +..+.. .+.++|+|+|++++ .+.|
T Consensus 144 ~~r~ly~~r~~le~~~~~~~~~~~yi~Sls~~~~vyKGmgl~~~v~~~y~dL~d~~~~g~~aigH~RySTnt~p~w~~AQ 223 (1479)
T 1ea0_A 144 FELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDLLDERFESDFAIYHQRYSTNTFPTWPLAQ 223 (1479)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCEEEEEESSEEECCBSSCGGGHHHHCGGGGSTTCCBSEEEEEECCCSCSCCCSTTSS
T ss_pred HHHHHHHHHHHHHHhhhhccCCcEEEEEecCcEEEEecCcCHHHhhhhhhhhcccccceeEEEeeecccCCCCCCcccCC
Confidence 345666778999999843 233321 13589999999842 6789
Q ss_pred ceEEeCCcEEEEEEEEEcchHHHHHHhc--------------------C-CCCCCHHHHHHHHHHHhhhcCC--------
Q 025395 67 RSIVVMDDIFCMFIGTSENICELKRHYG--------------------L-SRQATEAMVLIEAYKVLRDRAP-------- 117 (253)
Q Consensus 67 P~~~~~~~~~lv~nGeI~N~~eL~~~l~--------------------~-~~s~sD~e~il~ly~~~~~~g~-------- 117 (253)
|+. +++|||||.|...+|+.+. . +.+.||+|++.++++.+...|.
T Consensus 224 Pf~------~laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~g~~l~~A~~~ 297 (1479)
T 1ea0_A 224 PFR------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAGRTAPMVKMM 297 (1479)
T ss_dssp CCS------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccE------EEEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 983 3899999999999986642 1 6789999999766664322331
Q ss_pred -----CC---------------HHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhh
Q 025395 118 -----YP---------------PDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEA 177 (253)
Q Consensus 118 -----~g---------------~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~ 177 (253)
|. ...+++.++|.||+++.|. +.++++|||+|.|||.|+.++|+.+++|||..+|.-.
T Consensus 298 liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~dg--~~l~a~~DrnGlRPl~~g~t~d~~~v~ASE~galdi~ 375 (1479)
T 1ea0_A 298 LVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDG--RWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKID 375 (1479)
T ss_dssp HSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECSS--SEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCCC
T ss_pred hCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEeC--CEEEEEecCCCCcceEEEEECCCEEEEEcccccccCc
Confidence 11 1134789999999999887 8999999999999999999877889999999999766
Q ss_pred cCceeE--EeCCCeEEEe
Q 025395 178 CGISCA--PFPPGCMFMN 193 (253)
Q Consensus 178 ~~~~i~--~~ppG~~~~~ 193 (253)
+.+.+. ++.||+++..
T Consensus 376 ~a~~vrkg~l~PGemv~i 393 (1479)
T 1ea0_A 376 ETQVIEKGRLGPGEMIAV 393 (1479)
T ss_dssp GGGEEEEEECCTTCEEEE
T ss_pred chheeeccCCCCCeEEEE
Confidence 677666 9999998654
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.69 E-value=3.8e-16 Score=163.23 Aligned_cols=160 Identities=12% Similarity=0.095 Sum_probs=124.1
Q ss_pred chHHHHHHHHHhHhcCCCCccEEE-----------------------------eCCeEEEEEeCCCC-----CCCCceEE
Q 025395 25 KSKSRQEIAEIFQILWPETILCNI-----------------------------SNGNFMGLSHENES-----PLHPRSIV 70 (253)
Q Consensus 25 ~~~~~~~ml~~l~hRGpd~~g~~~-----------------------------~~~~~lgh~rl~~~-----~~~QP~~~ 70 (253)
+...+..+.++++||+.++..+.. .+.++|+|+|++++ .+.||+.
T Consensus 144 ~~r~ly~~r~~le~~~~~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL~~~~~~g~~aigH~RySTnt~p~w~~AQPf~- 222 (1520)
T 1ofd_A 144 LDRRLYIARSIIGKKLAEDFYVCSFSCRTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMR- 222 (1520)
T ss_dssp HHHHHHHHHHHHGGGCBTTBEEEEEESSEEEEEESSCHHHHHHHBHHHHCTTCCBSEEEEEECCCSSSCCCGGGSSCCS-
T ss_pred HHHHHHHHHHHHHhhccCCEEEEEecCcEEEEeCCccHHHHhhhhhhccccccceeEEEEEccccCCCCCCcccCCchh-
Confidence 456677788999999965444432 13689999999943 5699983
Q ss_pred eCCcEEEEEEEEEcchHHHH------HH-----------h---c-C-CCCCCHHHHHHHHHHHhhhcCCCCH--------
Q 025395 71 VMDDIFCMFIGTSENICELK------RH-----------Y---G-L-SRQATEAMVLIEAYKVLRDRAPYPP-------- 120 (253)
Q Consensus 71 ~~~~~~lv~nGeI~N~~eL~------~~-----------l---~-~-~~s~sD~e~il~ly~~~~~~g~~g~-------- 120 (253)
+++|||||.|...+| +. | . . +.+.||+|+|.++++.+...| ..+
T Consensus 223 -----~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g-~~l~~A~~~li 296 (1520)
T 1ofd_A 223 -----LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTG-RSPLEAAMILV 296 (1520)
T ss_dssp -----SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTT-CCHHHHHHHHS
T ss_pred -----eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcC-CCHHHHHHHhC
Confidence 389999999988887 21 1 2 1 788999999987776432223 111
Q ss_pred -----------------------HHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhh
Q 025395 121 -----------------------DQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEA 177 (253)
Q Consensus 121 -----------------------~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~ 177 (253)
..+++.++|.|++++.|. +.++++|||+|.|||.|+.++|+.+++|||..+|.-.
T Consensus 297 Peaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~ 374 (1520)
T 1ofd_A 297 PEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLP 374 (1520)
T ss_dssp CCCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCC
T ss_pred cchhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCc
Confidence 123689999999999997 8999999999999999999977789999999999776
Q ss_pred cCceeE--EeCCCeEEEe
Q 025395 178 CGISCA--PFPPGCMFMN 193 (253)
Q Consensus 178 ~~~~i~--~~ppG~~~~~ 193 (253)
+.+.+. ++.||+++..
T Consensus 375 ~a~~vrkg~l~PGemv~i 392 (1520)
T 1ofd_A 375 EVDIVEKGRLAPGQMIAV 392 (1520)
T ss_dssp GGGEEEEEECCTTCEEEE
T ss_pred chheeeccCCCCCeEEEE
Confidence 777667 8999998654
No 12
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=41.06 E-value=5.4 Score=31.78 Aligned_cols=27 Identities=11% Similarity=0.363 Sum_probs=21.1
Q ss_pred ccceEEEEEeCCCCEEEEEEeCCCCceEEE
Q 025395 128 QGKFAFILFDAKSHTLFAARDCDGGVDLNW 157 (253)
Q Consensus 128 ~G~FAfvi~D~~~~~l~~aRD~~G~rPLyy 157 (253)
+|.|++|+.+. +.++-..++ |++|||=
T Consensus 27 e~~~ScVv~~~--~~i~ts~~r-Gv~pL~~ 53 (151)
T 1vk9_A 27 KKDLSLLAYSG--RSIFESKDS-GLKPVVE 53 (151)
T ss_dssp HTTCSEEEESS--SEEEEECCS-TTHHHHH
T ss_pred hCCeeEEEecC--CEEEEeCCc-ChHHHHH
Confidence 68899999654 677777665 9999983
Done!