Query 025396
Match_columns 253
No_of_seqs 108 out of 1230
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02587 L-galactose dehydroge 100.0 4.9E-50 1.1E-54 347.3 28.6 252 1-252 62-313 (314)
2 COG0656 ARA1 Aldo/keto reducta 100.0 3.5E-49 7.7E-54 329.0 22.0 211 2-243 57-268 (280)
3 COG0667 Tas Predicted oxidored 100.0 4.3E-46 9.3E-51 321.2 25.0 230 1-242 64-312 (316)
4 KOG1575 Voltage-gated shaker-l 100.0 1E-45 2.2E-50 313.8 24.2 235 1-245 75-331 (336)
5 TIGR01293 Kv_beta voltage-depe 100.0 9.2E-45 2E-49 314.7 24.9 233 1-238 60-317 (317)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 7.9E-45 1.7E-49 318.3 24.4 241 1-247 76-341 (346)
7 PRK10625 tas putative aldo-ket 100.0 6.9E-44 1.5E-48 312.7 25.2 234 1-239 68-339 (346)
8 KOG1577 Aldo/keto reductase fa 100.0 8.5E-44 1.9E-48 296.9 20.3 214 2-241 57-287 (300)
9 PRK11172 dkgB 2,5-diketo-D-glu 100.0 5E-43 1.1E-47 296.8 23.0 210 1-240 44-253 (267)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 3E-43 6.5E-48 300.7 17.9 229 1-238 48-282 (283)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 3.4E-41 7.4E-46 288.3 24.9 223 1-236 60-284 (285)
12 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3.5E-40 7.6E-45 280.4 21.7 207 2-240 57-263 (275)
13 PRK10376 putative oxidoreducta 100.0 3.9E-39 8.4E-44 276.1 23.2 210 2-239 72-288 (290)
14 KOG1576 Predicted oxidoreducta 100.0 9.8E-39 2.1E-43 258.4 22.6 249 2-253 86-339 (342)
15 PRK14863 bifunctional regulato 100.0 1.1E-37 2.3E-42 266.9 20.8 203 1-219 61-266 (292)
16 COG4989 Predicted oxidoreducta 100.0 1E-37 2.2E-42 250.7 18.0 219 1-238 62-292 (298)
17 COG1453 Predicted oxidoreducta 100.0 1.3E-34 2.9E-39 244.6 19.8 214 2-238 66-284 (391)
18 KOG3023 Glutamate-cysteine lig 98.2 3E-06 6.4E-11 68.8 6.2 73 69-144 155-227 (285)
19 PF07021 MetW: Methionine bios 91.0 1.9 4.1E-05 34.6 8.2 113 30-150 43-172 (193)
20 TIGR00190 thiC thiamine biosyn 87.9 11 0.00025 33.6 11.4 96 29-151 135-230 (423)
21 cd00739 DHPS DHPS subgroup of 87.8 15 0.00033 30.9 14.2 145 30-186 20-168 (257)
22 PRK13352 thiamine biosynthesis 86.3 16 0.00035 32.9 11.5 96 29-151 138-233 (431)
23 PRK04452 acetyl-CoA decarbonyl 85.0 16 0.00035 31.9 10.8 95 45-147 86-185 (319)
24 PRK10558 alpha-dehydro-beta-de 81.0 30 0.00066 29.1 10.8 102 76-218 10-113 (256)
25 cd00423 Pterin_binding Pterin 80.3 34 0.00073 28.7 13.3 143 31-184 21-166 (258)
26 COG2100 Predicted Fe-S oxidore 79.0 35 0.00076 29.9 10.4 90 89-184 235-332 (414)
27 TIGR00381 cdhD CO dehydrogenas 78.0 49 0.0011 29.6 11.3 112 34-150 128-253 (389)
28 PF07994 NAD_binding_5: Myo-in 74.7 32 0.00069 29.7 9.2 156 33-218 131-290 (295)
29 PRK13753 dihydropteroate synth 74.2 55 0.0012 28.0 14.1 105 31-147 22-129 (279)
30 TIGR01496 DHPS dihydropteroate 73.8 53 0.0012 27.6 13.6 104 30-144 19-125 (257)
31 TIGR03239 GarL 2-dehydro-3-deo 72.6 56 0.0012 27.4 10.7 102 76-218 3-106 (249)
32 PRK07535 methyltetrahydrofolat 72.3 59 0.0013 27.5 14.0 136 32-188 23-158 (261)
33 PRK01045 ispH 4-hydroxy-3-meth 71.8 20 0.00044 30.9 7.3 122 73-216 144-276 (298)
34 PF01876 RNase_P_p30: RNase P 71.5 32 0.00069 26.2 7.8 120 84-233 24-145 (150)
35 TIGR00216 ispH_lytB (E)-4-hydr 71.4 17 0.00037 31.1 6.7 123 72-216 143-274 (280)
36 PF01081 Aldolase: KDPG and KH 71.3 25 0.00054 28.4 7.3 82 39-142 24-106 (196)
37 COG2069 CdhD CO dehydrogenase/ 71.1 47 0.001 28.6 9.1 100 42-149 158-263 (403)
38 COG0422 ThiC Thiamine biosynth 70.4 80 0.0017 28.2 12.6 96 29-151 136-231 (432)
39 PRK09284 thiamine biosynthesis 70.2 79 0.0017 29.7 10.9 94 29-151 290-383 (607)
40 PRK06015 keto-hydroxyglutarate 69.7 22 0.00047 28.8 6.7 88 32-142 14-102 (201)
41 COG1140 NarY Nitrate reductase 69.0 2.2 4.8E-05 37.6 0.9 57 81-140 262-318 (513)
42 TIGR01182 eda Entner-Doudoroff 68.5 26 0.00056 28.5 6.9 88 32-142 18-106 (204)
43 PLN02444 HMP-P synthase 68.2 82 0.0018 29.7 10.6 94 29-151 295-388 (642)
44 COG1121 ZnuC ABC-type Mn/Zn tr 67.1 33 0.00071 28.9 7.5 69 32-103 113-207 (254)
45 cd03174 DRE_TIM_metallolyase D 65.2 78 0.0017 26.2 9.6 107 30-144 15-135 (265)
46 PRK12360 4-hydroxy-3-methylbut 64.9 34 0.00074 29.3 7.3 119 76-216 150-275 (281)
47 TIGR00676 fadh2 5,10-methylene 64.5 38 0.00083 28.7 7.6 105 30-140 69-186 (272)
48 KOG0059 Lipid exporter ABCA1 a 64.4 43 0.00093 33.6 8.9 75 29-105 668-768 (885)
49 PRK10128 2-keto-3-deoxy-L-rham 64.2 90 0.0019 26.5 11.3 102 76-218 9-112 (267)
50 PRK00730 rnpA ribonuclease P; 63.4 38 0.00083 25.7 6.5 61 12-80 46-108 (138)
51 PF02401 LYTB: LytB protein; 62.6 15 0.00032 31.5 4.7 120 75-216 145-275 (281)
52 KOG2741 Dimeric dihydrodiol de 62.2 23 0.0005 31.1 5.8 70 70-141 58-127 (351)
53 PRK05692 hydroxymethylglutaryl 61.1 72 0.0016 27.3 8.7 104 31-142 23-138 (287)
54 PF14502 HTH_41: Helix-turn-he 60.8 7.2 0.00016 23.7 1.8 28 171-198 7-36 (48)
55 PF01408 GFO_IDH_MocA: Oxidore 59.2 33 0.00071 24.5 5.6 65 76-142 54-118 (120)
56 TIGR02311 HpaI 2,4-dihydroxyhe 58.7 1.1E+02 0.0023 25.6 10.9 102 76-219 3-107 (249)
57 cd00308 enolase_like Enolase-s 57.7 55 0.0012 26.7 7.3 75 72-149 133-208 (229)
58 cd00740 MeTr MeTr subgroup of 57.2 1.2E+02 0.0025 25.5 12.5 107 30-146 22-128 (252)
59 PF11242 DUF2774: Protein of u 55.7 17 0.00037 23.3 2.9 22 173-194 16-37 (63)
60 COG4152 ABC-type uncharacteriz 55.4 1.2E+02 0.0027 25.7 8.6 75 29-105 100-200 (300)
61 PRK06552 keto-hydroxyglutarate 55.3 56 0.0012 26.7 6.8 88 32-142 23-114 (213)
62 PF03102 NeuB: NeuB family; I 55.2 36 0.00078 28.4 5.7 76 14-103 114-190 (241)
63 cd00537 MTHFR Methylenetetrahy 54.5 1.3E+02 0.0028 25.3 9.9 105 29-139 68-188 (274)
64 PLN02880 tyrosine decarboxylas 54.4 33 0.00071 31.9 5.9 59 34-92 188-246 (490)
65 PF14871 GHL6: Hypothetical gl 52.8 52 0.0011 24.6 5.8 23 126-148 46-68 (132)
66 COG2089 SpsE Sialic acid synth 52.5 71 0.0015 28.0 7.1 76 15-104 149-225 (347)
67 PF13378 MR_MLE_C: Enolase C-t 52.1 25 0.00055 25.0 3.9 55 91-149 3-57 (111)
68 cd07944 DRE_TIM_HOA_like 4-hyd 51.9 81 0.0018 26.6 7.5 107 29-142 15-127 (266)
69 COG4555 NatA ABC-type Na+ tran 51.5 1.2E+02 0.0025 25.1 7.7 74 29-104 103-202 (245)
70 PRK13796 GTPase YqeH; Provisio 51.3 1.5E+02 0.0033 26.3 9.4 85 12-102 96-180 (365)
71 PRK09856 fructoselysine 3-epim 51.2 89 0.0019 26.1 7.7 23 126-148 49-71 (275)
72 PRK09856 fructoselysine 3-epim 50.9 1.4E+02 0.0031 24.8 8.9 50 128-182 94-143 (275)
73 COG1751 Uncharacterized conser 50.9 1.2E+02 0.0025 23.6 9.1 80 69-149 12-95 (186)
74 PRK01313 rnpA ribonuclease P; 50.8 83 0.0018 23.5 6.5 63 12-81 47-113 (129)
75 TIGR03822 AblA_like_2 lysine-2 49.5 1.4E+02 0.0031 25.9 8.8 67 74-141 188-262 (321)
76 cd03315 MLE_like Muconate lact 48.3 88 0.0019 26.1 7.2 73 73-148 169-242 (265)
77 TIGR00035 asp_race aspartate r 48.1 1.4E+02 0.0031 24.4 8.2 68 31-99 14-90 (229)
78 TIGR00677 fadh2_euk methylenet 48.0 1.1E+02 0.0023 26.2 7.6 104 30-140 70-190 (281)
79 COG0796 MurI Glutamate racemas 47.5 1.5E+02 0.0033 25.2 8.2 158 67-240 51-222 (269)
80 cd03319 L-Ala-DL-Glu_epimerase 47.3 89 0.0019 26.9 7.2 74 72-148 216-290 (316)
81 TIGR01928 menC_lowGC/arch o-su 47.2 94 0.002 27.0 7.4 76 71-149 210-286 (324)
82 PRK00087 4-hydroxy-3-methylbut 46.9 74 0.0016 30.7 7.1 121 74-216 145-272 (647)
83 TIGR03597 GTPase_YqeH ribosome 46.7 2E+02 0.0043 25.4 9.4 84 13-102 91-174 (360)
84 PRK01222 N-(5'-phosphoribosyl) 46.7 1.4E+02 0.003 24.3 7.8 67 44-120 19-86 (210)
85 PLN02590 probable tyrosine dec 46.0 64 0.0014 30.4 6.4 60 33-92 235-294 (539)
86 cd01834 SGNH_hydrolase_like_2 46.0 65 0.0014 24.8 5.7 98 85-183 36-149 (191)
87 PRK00499 rnpA ribonuclease P; 45.8 1.1E+02 0.0023 22.1 6.4 64 12-82 38-104 (114)
88 cd03323 D-glucarate_dehydratas 45.6 1.3E+02 0.0028 27.0 8.1 72 72-146 249-321 (395)
89 PF13090 PP_kinase_C: Polyphos 45.5 40 0.00087 29.7 4.6 82 55-141 11-96 (352)
90 TIGR02398 gluc_glyc_Psyn gluco 45.4 2.4E+02 0.0052 26.2 9.9 105 38-150 273-394 (487)
91 PF11020 DUF2610: Domain of un 45.0 60 0.0013 22.0 4.4 28 163-190 47-74 (82)
92 smart00633 Glyco_10 Glycosyl h 44.9 1.7E+02 0.0038 24.3 8.4 76 69-144 135-225 (254)
93 cd03318 MLE Muconate Lactonizi 44.5 86 0.0019 27.6 6.8 73 72-147 227-300 (365)
94 PRK08776 cystathionine gamma-s 44.2 2.4E+02 0.0052 25.4 10.8 75 70-148 110-186 (405)
95 TIGR03705 poly_P_kin polyphosp 43.6 84 0.0018 30.5 6.9 82 55-141 332-417 (672)
96 TIGR01228 hutU urocanate hydra 43.0 70 0.0015 29.6 5.8 52 43-104 194-245 (545)
97 cd03322 rpsA The starvation se 41.7 1.2E+02 0.0027 26.7 7.3 72 71-145 201-273 (361)
98 TIGR02534 mucon_cyclo muconate 41.5 1.1E+02 0.0025 27.0 7.1 74 72-148 226-300 (368)
99 cd03316 MR_like Mandelate race 41.3 2.4E+02 0.0053 24.6 9.2 70 72-144 228-298 (357)
100 PRK05414 urocanate hydratase; 41.2 80 0.0017 29.4 6.0 75 13-104 166-254 (556)
101 PF03599 CdhD: CO dehydrogenas 41.1 2.7E+02 0.0059 25.1 11.5 87 51-148 69-155 (386)
102 PRK05339 PEP synthetase regula 41.0 1.9E+02 0.0041 24.6 7.9 30 119-148 64-95 (269)
103 PLN02540 methylenetetrahydrofo 40.8 3.3E+02 0.0071 25.9 11.9 184 29-218 68-283 (565)
104 TIGR01422 phosphonatase phosph 40.7 1.2E+02 0.0025 25.0 6.7 69 69-138 101-171 (253)
105 PRK07114 keto-hydroxyglutarate 40.6 1.3E+02 0.0028 24.8 6.7 91 32-142 25-117 (222)
106 PF01402 RHH_1: Ribbon-helix-h 40.4 53 0.0012 18.3 3.3 21 169-189 10-30 (39)
107 TIGR01428 HAD_type_II 2-haloal 40.3 1.4E+02 0.003 23.4 6.9 99 36-139 61-164 (198)
108 cd01828 sialate_O-acetylestera 39.9 1.6E+02 0.0035 22.2 8.6 94 83-183 22-126 (169)
109 PRK13958 N-(5'-phosphoribosyl) 39.0 1.2E+02 0.0027 24.5 6.4 67 43-119 16-83 (207)
110 PF01964 ThiC: ThiC family; I 38.8 66 0.0014 29.0 4.9 97 29-152 134-230 (420)
111 PRK03459 rnpA ribonuclease P; 38.6 1.6E+02 0.0034 21.7 6.6 64 12-82 48-114 (122)
112 PRK10826 2-deoxyglucose-6-phos 38.4 1.7E+02 0.0036 23.5 7.2 69 69-138 94-163 (222)
113 TIGR01502 B_methylAsp_ase meth 38.4 1.8E+02 0.0039 26.4 7.9 71 73-146 281-357 (408)
114 PRK03031 rnpA ribonuclease P; 38.3 1.6E+02 0.0034 21.6 6.5 64 13-82 48-114 (122)
115 COG1131 CcmA ABC-type multidru 37.8 1.1E+02 0.0024 26.2 6.2 51 52-103 155-205 (293)
116 cd03325 D-galactonate_dehydrat 37.7 1.5E+02 0.0033 26.0 7.3 71 71-144 214-285 (352)
117 COG1151 6Fe-6S prismane cluste 37.7 3.6E+02 0.0079 25.6 10.2 124 34-183 360-490 (576)
118 PRK10206 putative oxidoreducta 37.3 1E+02 0.0022 27.0 6.1 19 77-95 57-75 (344)
119 COG1149 MinD superfamily P-loo 37.2 87 0.0019 26.8 5.2 90 43-148 155-250 (284)
120 PRK10200 putative racemase; Pr 37.1 2.4E+02 0.0051 23.2 8.4 72 31-103 14-94 (230)
121 COG2987 HutU Urocanate hydrata 37.1 90 0.002 28.6 5.5 61 45-117 205-265 (561)
122 cd07939 DRE_TIM_NifV Streptomy 36.7 2.5E+02 0.0054 23.4 13.0 98 30-141 16-127 (259)
123 PF00356 LacI: Bacterial regul 36.4 52 0.0011 19.7 2.9 39 173-217 2-40 (46)
124 COG2077 Tpx Peroxiredoxin [Pos 36.0 20 0.00043 27.6 1.2 75 89-196 58-133 (158)
125 COG0761 lytB 4-Hydroxy-3-methy 35.9 1.5E+02 0.0033 25.4 6.5 71 127-218 204-280 (294)
126 COG1831 Predicted metal-depend 35.9 1.4E+02 0.003 25.4 6.2 122 14-138 34-185 (285)
127 KOG0053 Cystathionine beta-lya 35.8 3.4E+02 0.0074 24.7 9.3 79 69-152 126-207 (409)
128 TIGR00735 hisF imidazoleglycer 35.1 2.6E+02 0.0057 23.2 8.0 90 43-140 163-253 (254)
129 PRK11579 putative oxidoreducta 34.5 1.3E+02 0.0028 26.3 6.3 65 75-141 55-119 (346)
130 PF00682 HMGL-like: HMGL-like 34.2 2.4E+02 0.0052 22.9 7.6 101 31-140 11-124 (237)
131 PRK04390 rnpA ribonuclease P; 34.0 1.9E+02 0.0041 21.2 6.6 64 12-81 44-109 (120)
132 COG1104 NifS Cysteine sulfinat 33.9 1.3E+02 0.0029 27.0 6.2 77 71-150 103-184 (386)
133 PF10668 Phage_terminase: Phag 33.9 38 0.00083 21.7 2.1 17 172-188 24-40 (60)
134 COG0135 TrpF Phosphoribosylant 33.8 2.6E+02 0.0057 22.8 8.1 82 44-141 18-102 (208)
135 PF03618 Kinase-PPPase: Kinase 33.5 2.8E+02 0.0061 23.4 7.7 30 119-148 58-89 (255)
136 PRK12331 oxaloacetate decarbox 33.5 3.9E+02 0.0084 24.6 12.7 108 31-142 23-141 (448)
137 PF03428 RP-C: Replication pro 33.3 2.4E+02 0.0053 22.3 7.2 64 182-252 3-67 (177)
138 COG2179 Predicted hydrolase of 32.9 2.5E+02 0.0053 22.2 6.8 76 52-140 35-110 (175)
139 COG2861 Uncharacterized protei 32.8 3E+02 0.0064 23.1 8.4 86 54-148 79-184 (250)
140 PRK13209 L-xylulose 5-phosphat 32.7 2.9E+02 0.0064 23.0 9.0 16 128-143 103-118 (283)
141 PF03102 NeuB: NeuB family; I 32.6 2.8E+02 0.0061 23.1 7.6 31 188-218 105-135 (241)
142 PRK05443 polyphosphate kinase; 32.4 1.7E+02 0.0036 28.6 7.0 82 55-141 341-426 (691)
143 PTZ00402 glutamyl-tRNA synthet 32.3 3.3E+02 0.0071 26.1 8.7 61 31-101 98-158 (601)
144 PRK13352 thiamine biosynthesis 32.2 71 0.0015 28.9 4.1 98 71-183 122-221 (431)
145 COG3737 Uncharacterized conser 32.1 72 0.0016 23.5 3.4 61 85-148 44-107 (127)
146 PF13289 SIR2_2: SIR2-like dom 32.0 78 0.0017 23.2 4.0 89 46-141 37-143 (143)
147 PLN02363 phosphoribosylanthran 32.0 1.8E+02 0.004 24.5 6.5 66 45-119 64-130 (256)
148 cd03327 MR_like_2 Mandelate ra 31.9 1.9E+02 0.0042 25.2 6.9 71 71-144 209-280 (341)
149 PRK15072 bifunctional D-altron 31.7 2.2E+02 0.0049 25.6 7.5 72 71-145 244-316 (404)
150 cd05560 Xcc1710_like Xcc1710_l 31.6 1.7E+02 0.0037 21.0 5.5 53 90-147 37-89 (109)
151 PF10566 Glyco_hydro_97: Glyco 31.5 88 0.0019 26.7 4.5 23 125-147 74-96 (273)
152 cd03770 SR_TndX_transposase Se 31.2 94 0.002 23.2 4.3 23 71-93 55-77 (140)
153 COG2159 Predicted metal-depend 31.1 3.3E+02 0.0072 23.3 8.1 98 44-147 55-167 (293)
154 COG0084 TatD Mg-dependent DNas 31.1 1.6E+02 0.0035 24.8 6.0 20 170-189 225-244 (256)
155 cd05126 Mth938 Mth938 domain. 31.0 1.7E+02 0.0038 21.3 5.5 54 88-145 41-94 (117)
156 PF05913 DUF871: Bacterial pro 31.0 16 0.00035 32.4 -0.0 124 74-217 102-235 (357)
157 PF13419 HAD_2: Haloacid dehal 30.9 2.2E+02 0.0048 21.0 6.8 71 68-139 78-149 (176)
158 PRK12558 glutamyl-tRNA synthet 30.9 2.3E+02 0.0049 26.1 7.3 60 31-101 48-107 (445)
159 KOG1549 Cysteine desulfurase N 30.8 3.4E+02 0.0073 24.8 8.2 79 71-149 143-223 (428)
160 COG1168 MalY Bifunctional PLP- 30.7 1E+02 0.0022 27.6 4.8 16 127-142 181-196 (388)
161 PRK05718 keto-hydroxyglutarate 30.6 2.6E+02 0.0056 22.8 7.0 88 32-142 25-113 (212)
162 PF08418 Pol_alpha_B_N: DNA po 30.6 51 0.0011 27.5 2.9 27 167-193 9-35 (253)
163 PRK14017 galactonate dehydrata 30.2 2.2E+02 0.0047 25.4 7.1 71 72-145 216-287 (382)
164 COG0135 TrpF Phosphoribosylant 30.0 74 0.0016 25.9 3.6 38 49-93 73-110 (208)
165 TIGR03822 AblA_like_2 lysine-2 29.9 3.7E+02 0.008 23.3 12.6 78 70-150 153-240 (321)
166 TIGR02127 pyrF_sub2 orotidine 29.9 3.4E+02 0.0074 22.9 13.1 160 33-217 36-207 (261)
167 COG0673 MviM Predicted dehydro 29.6 1.4E+02 0.0031 25.6 5.7 68 72-141 55-122 (342)
168 cd00668 Ile_Leu_Val_MetRS_core 29.6 1.1E+02 0.0024 26.3 5.0 48 34-87 82-131 (312)
169 KOG3157 Proline synthetase co- 29.5 2.6E+02 0.0057 22.9 6.5 29 166-194 185-213 (244)
170 PRK08419 lipid A biosynthesis 29.4 1.4E+02 0.0031 25.4 5.6 74 31-105 59-135 (298)
171 PRK00912 ribonuclease P protei 29.4 3.2E+02 0.0069 22.4 9.8 47 187-233 158-204 (237)
172 PRK13210 putative L-xylulose 5 29.4 3.3E+02 0.0072 22.6 9.5 14 43-56 24-37 (284)
173 PRK12323 DNA polymerase III su 29.3 3.9E+02 0.0085 26.1 8.7 69 32-105 105-175 (700)
174 PRK03971 putative deoxyhypusin 29.3 1.4E+02 0.0031 26.2 5.5 85 41-144 125-211 (334)
175 PRK13478 phosphonoacetaldehyde 29.0 2.4E+02 0.0052 23.4 6.8 69 69-138 103-173 (267)
176 COG4077 Uncharacterized protei 28.5 2.6E+02 0.0056 21.1 6.5 84 12-105 32-115 (156)
177 PF03851 UvdE: UV-endonuclease 28.3 1.2E+02 0.0027 25.8 4.8 77 127-218 48-128 (275)
178 PRK07328 histidinol-phosphatas 28.3 3.6E+02 0.0077 22.6 12.3 54 37-91 94-161 (269)
179 PF07287 DUF1446: Protein of u 28.2 3.8E+02 0.0083 23.9 8.0 89 71-183 10-100 (362)
180 PF10941 DUF2620: Protein of u 28.2 70 0.0015 23.4 2.8 25 74-99 85-109 (117)
181 cd03317 NAAAR N-acylamino acid 28.1 3.5E+02 0.0076 23.6 8.0 72 72-146 216-288 (354)
182 PF13518 HTH_28: Helix-turn-he 27.8 75 0.0016 18.7 2.7 21 173-194 15-35 (52)
183 TIGR02026 BchE magnesium-proto 27.7 5E+02 0.011 24.1 11.7 23 69-91 224-246 (497)
184 PF01476 LysM: LysM domain; I 27.7 66 0.0014 18.3 2.3 19 171-189 7-25 (44)
185 PRK04820 rnpA ribonuclease P; 27.7 2.8E+02 0.0061 21.2 6.9 64 13-82 49-114 (145)
186 TIGR03569 NeuB_NnaB N-acetylne 27.6 4.2E+02 0.0092 23.2 8.5 83 32-122 144-227 (329)
187 PLN02438 inositol-3-phosphate 27.4 4.2E+02 0.0091 24.8 8.2 52 33-84 206-258 (510)
188 COG2062 SixA Phosphohistidine 27.4 3E+02 0.0065 21.5 6.5 25 69-95 87-111 (163)
189 COG0800 Eda 2-keto-3-deoxy-6-p 27.4 2.6E+02 0.0056 22.9 6.3 59 73-142 52-111 (211)
190 PRK09490 metH B12-dependent me 27.4 7.6E+02 0.017 26.1 15.6 137 33-187 383-522 (1229)
191 TIGR00188 rnpA ribonuclease P 27.3 2.3E+02 0.0049 20.0 6.0 60 13-79 42-103 (105)
192 PF00809 Pterin_bind: Pterin b 27.2 3.3E+02 0.0072 21.9 8.1 95 44-146 28-125 (210)
193 cd07943 DRE_TIM_HOA 4-hydroxy- 27.0 3.7E+02 0.0081 22.4 9.1 107 31-143 19-131 (263)
194 PRK02083 imidazole glycerol ph 27.0 3.6E+02 0.0079 22.3 8.7 85 51-140 166-251 (253)
195 PRK01060 endonuclease IV; Prov 27.0 3.5E+02 0.0075 22.5 7.5 46 36-83 14-59 (281)
196 PF05763 DUF835: Protein of un 27.0 1.4E+02 0.0031 22.4 4.5 65 14-81 41-105 (136)
197 KOG0996 Structural maintenance 26.8 47 0.001 33.9 2.3 72 69-148 599-676 (1293)
198 PF01175 Urocanase: Urocanase; 26.6 1.8E+02 0.0038 27.2 5.7 88 12-118 155-256 (546)
199 cd01836 FeeA_FeeB_like SGNH_hy 26.6 3E+02 0.0064 21.2 6.6 62 84-145 42-114 (191)
200 COG5482 Uncharacterized conser 26.5 2.2E+02 0.0048 22.7 5.5 35 127-161 85-120 (229)
201 cd08568 GDPD_TmGDE_like Glycer 26.5 3.5E+02 0.0075 21.9 7.3 27 79-105 112-138 (226)
202 PF00749 tRNA-synt_1c: tRNA sy 26.3 3.1E+02 0.0067 23.8 7.1 65 30-104 46-110 (314)
203 TIGR01378 thi_PPkinase thiamin 26.3 1.6E+02 0.0036 23.6 5.1 40 181-220 71-112 (203)
204 COG1026 Predicted Zn-dependent 26.3 7.2E+02 0.016 25.5 11.3 74 167-240 417-494 (978)
205 TIGR01437 selA_rel uncharacter 26.2 4.5E+02 0.0098 23.1 10.0 55 84-142 126-184 (363)
206 TIGR03586 PseI pseudaminic aci 26.0 3.2E+02 0.007 23.9 7.1 81 32-122 145-226 (327)
207 cd00405 PRAI Phosphoribosylant 26.0 1.3E+02 0.0028 24.0 4.5 40 51-97 73-112 (203)
208 PF05913 DUF871: Bacterial pro 25.8 73 0.0016 28.3 3.1 55 88-142 2-65 (357)
209 TIGR03128 RuMP_HxlA 3-hexulose 25.7 3.4E+02 0.0073 21.5 8.9 87 43-142 17-107 (206)
210 KOG0237 Glycinamide ribonucleo 25.5 2.4E+02 0.0051 27.1 6.3 71 127-197 58-144 (788)
211 COG3113 Predicted NTP binding 25.2 1.6E+02 0.0035 20.9 4.2 65 34-105 26-90 (99)
212 TIGR00321 dhys deoxyhypusine s 25.2 2.3E+02 0.0051 24.5 6.0 76 41-143 104-180 (301)
213 cd00019 AP2Ec AP endonuclease 25.0 4E+02 0.0088 22.1 8.3 115 42-183 17-138 (279)
214 PRK13347 coproporphyrinogen II 25.0 4.8E+02 0.01 23.8 8.5 64 30-95 215-291 (453)
215 cd01832 SGNH_hydrolase_like_1 24.6 2.7E+02 0.0059 21.2 6.1 53 127-183 95-147 (185)
216 TIGR02660 nifV_homocitr homoci 24.5 5E+02 0.011 23.0 12.7 98 30-141 19-130 (365)
217 cd01075 NAD_bind_Leu_Phe_Val_D 24.4 1.5E+02 0.0033 23.7 4.6 67 128-194 123-196 (200)
218 PF04800 ETC_C1_NDUFA4: ETC co 24.2 68 0.0015 22.9 2.2 24 126-149 58-81 (101)
219 cd03314 MAL Methylaspartate am 24.1 4.1E+02 0.0089 23.7 7.6 70 73-145 245-320 (369)
220 COG2055 Malate/L-lactate dehyd 24.1 3.2E+02 0.0069 24.3 6.7 92 30-142 5-113 (349)
221 KOG2019 Metalloendoprotease HM 24.1 92 0.002 30.3 3.6 64 175-238 464-529 (998)
222 TIGR01686 FkbH FkbH-like domai 24.0 3.1E+02 0.0067 23.6 6.8 67 69-140 33-103 (320)
223 COG3589 Uncharacterized conser 23.9 5.1E+02 0.011 22.9 8.1 101 127-239 52-167 (360)
224 cd01838 Isoamyl_acetate_hydrol 23.8 3.4E+02 0.0073 20.8 8.9 101 84-184 34-159 (199)
225 PRK14988 GMP/IMP nucleotidase; 23.7 3.4E+02 0.0073 22.0 6.6 70 68-138 94-164 (224)
226 cd00338 Ser_Recombinase Serine 23.5 1.6E+02 0.0035 21.3 4.3 23 38-60 52-74 (137)
227 PRK11613 folP dihydropteroate 23.3 4.8E+02 0.01 22.3 14.0 103 31-144 35-140 (282)
228 TIGR00618 sbcc exonuclease Sbc 23.2 1.7E+02 0.0037 30.0 5.7 49 51-101 978-1026(1042)
229 PRK09449 dUMP phosphatase; Pro 23.2 3.4E+02 0.0075 21.5 6.6 69 68-138 96-165 (224)
230 PF05690 ThiG: Thiazole biosyn 23.2 3.9E+02 0.0085 22.4 6.6 53 30-84 72-124 (247)
231 TIGR02090 LEU1_arch isopropylm 23.1 5.3E+02 0.011 22.8 9.0 98 30-141 18-129 (363)
232 PLN02746 hydroxymethylglutaryl 23.1 5.3E+02 0.012 22.8 13.0 108 30-144 64-182 (347)
233 COG3033 TnaA Tryptophanase [Am 23.0 1.9E+02 0.004 26.0 5.0 51 92-142 168-224 (471)
234 TIGR01329 cysta_beta_ly_E cyst 23.0 5.3E+02 0.012 22.8 9.1 53 93-149 119-173 (378)
235 PRK01492 rnpA ribonuclease P; 23.0 3.1E+02 0.0067 20.0 6.8 61 13-79 47-113 (118)
236 PLN00191 enolase 22.6 6.2E+02 0.013 23.4 11.6 135 32-181 296-442 (457)
237 COG0673 MviM Predicted dehydro 22.5 2.6E+02 0.0056 24.0 6.0 69 172-240 42-116 (342)
238 PRK13505 formate--tetrahydrofo 22.4 1.8E+02 0.0039 27.5 5.1 108 109-216 372-499 (557)
239 PF13167 GTP-bdg_N: GTP-bindin 22.1 74 0.0016 22.4 2.0 72 166-239 6-80 (95)
240 TIGR01927 menC_gamma/gm+ o-suc 22.1 5.1E+02 0.011 22.2 8.9 73 74-149 196-269 (307)
241 PRK11414 colanic acid/biofilm 22.0 4.2E+02 0.0091 21.2 7.4 66 174-240 38-118 (221)
242 TIGR02814 pfaD_fam PfaD family 21.8 3.1E+02 0.0067 25.2 6.4 68 76-144 36-107 (444)
243 PRK07920 lipid A biosynthesis 21.7 2.8E+02 0.0061 23.6 6.0 75 29-104 50-129 (298)
244 PRK13223 phosphoglycolate phos 21.5 4.1E+02 0.0088 22.3 6.9 37 68-105 102-138 (272)
245 COG1456 CdhE CO dehydrogenase/ 21.4 6E+02 0.013 22.8 8.0 104 29-145 105-213 (467)
246 TIGR03355 VI_chp_2 type VI sec 21.3 3.1E+02 0.0068 25.4 6.3 62 34-104 51-115 (473)
247 PRK15408 autoinducer 2-binding 21.2 5.5E+02 0.012 22.3 9.6 77 12-102 22-98 (336)
248 COG0419 SbcC ATPase involved i 21.2 2.5E+02 0.0053 28.4 6.2 60 36-97 824-885 (908)
249 PRK10508 hypothetical protein; 21.2 1.2E+02 0.0025 26.6 3.5 22 31-52 286-307 (333)
250 COG0191 Fba Fructose/tagatose 21.1 4.9E+02 0.011 22.4 7.0 108 73-183 7-131 (286)
251 PRK08861 cystathionine gamma-s 21.0 6E+02 0.013 22.7 11.3 74 72-149 105-180 (388)
252 PF05943 DUF877: Protein of un 20.9 5.3E+02 0.012 23.6 7.7 44 56-103 19-65 (423)
253 TIGR02080 O_succ_thio_ly O-suc 20.9 5.9E+02 0.013 22.6 10.9 73 71-147 102-176 (382)
254 COG0352 ThiE Thiamine monophos 20.9 3.6E+02 0.0079 22.0 6.1 56 85-144 104-165 (211)
255 COG2102 Predicted ATPases of P 20.8 4.8E+02 0.01 21.6 6.7 98 69-184 75-176 (223)
256 PRK04820 rnpA ribonuclease P; 20.8 2.4E+02 0.0052 21.5 4.7 35 11-49 83-117 (145)
257 TIGR00542 hxl6Piso_put hexulos 20.8 5E+02 0.011 21.6 9.6 51 127-182 97-147 (279)
258 PRK09458 pspB phage shock prot 20.6 2.8E+02 0.006 18.6 4.6 35 207-248 40-74 (75)
259 PRK15440 L-rhamnonate dehydrat 20.6 3.2E+02 0.007 24.6 6.3 70 71-143 246-318 (394)
260 COG2022 ThiG Uncharacterized e 20.5 4.3E+02 0.0092 22.2 6.3 54 29-84 78-131 (262)
261 PF06340 TcpF: Vibrio cholerae 20.5 79 0.0017 26.6 2.1 50 31-85 72-125 (311)
262 smart00857 Resolvase Resolvase 20.4 3.1E+02 0.0067 20.1 5.4 23 71-93 52-74 (148)
263 PF01053 Cys_Met_Meta_PP: Cys/ 20.1 4E+02 0.0087 23.9 6.8 79 69-151 104-185 (386)
264 PRK11587 putative phosphatase; 20.0 3.8E+02 0.0082 21.3 6.2 36 69-105 85-120 (218)
No 1
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=4.9e-50 Score=347.30 Aligned_cols=252 Identities=83% Similarity=1.303 Sum_probs=217.8
Q ss_pred CcchhhhhcCCCCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHH
Q 025396 1 MLGKALKAAGVPRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQK 80 (253)
Q Consensus 1 ~lG~al~~~~~~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~ 80 (253)
++|++|++.+.+|+++||+||++++..+.+++++.+++++++||++||+||||+|+||+|+..+......++|++|++++
T Consensus 62 ~lG~al~~~~~~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~ 141 (314)
T PLN02587 62 VLGKALKALGIPREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLK 141 (314)
T ss_pred HHHHHHHhCCCCcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHH
Confidence 37999997666799999999998643334578999999999999999999999999999975444455678999999999
Q ss_pred HcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccccCCCCCCCCC
Q 025396 81 EAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWH 160 (253)
Q Consensus 81 ~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~~~ 160 (253)
++||||+||+|||+.+++..+.....++.++++++|++|++.++...+++++|+++||++++|+||++|+|++++.+.+.
T Consensus 142 ~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~ 221 (314)
T PLN02587 142 ESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAMGLLTENGPPEWH 221 (314)
T ss_pred HCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhccccCCCCCCCCC
Confidence 99999999999999999888877655556788889999998876656899999999999999999999999987544444
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHhcc
Q 025396 161 PASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELALFGKDQEALTEVEAILKP 240 (253)
Q Consensus 161 ~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~i~~~~~~ 240 (253)
+..+.....++.+.++|++++.|++|+||||++++|.|++||+|+++++|+++|++++..+..++|+++++++++++++.
T Consensus 222 ~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~ 301 (314)
T PLN02587 222 PAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILAP 301 (314)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcc
Confidence 44567777888899999999999999999999999999999999999999999999985432346899999999999987
Q ss_pred CCCCCCCCCCCC
Q 025396 241 VKNQTWPSGIHQ 252 (253)
Q Consensus 241 ~~~~~~~~~~~~ 252 (253)
..+..|++|+|+
T Consensus 302 ~~~~~~~~~~~~ 313 (314)
T PLN02587 302 VKNKTWPSGIQE 313 (314)
T ss_pred ccCCCCccCCCC
Confidence 777779999886
No 2
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=3.5e-49 Score=329.03 Aligned_cols=211 Identities=28% Similarity=0.420 Sum_probs=184.5
Q ss_pred cchhhhhcCCCCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHH
Q 025396 2 LGKALKAAGVPRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKE 81 (253)
Q Consensus 2 lG~al~~~~~~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~ 81 (253)
+|+|+++.|++|+++||+||+++ .+..++.+.+++++||++||+||+|||+||||... ......++|++|+++++
T Consensus 57 VG~aI~~s~v~ReelFittKvw~----~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~~~~~~etw~alE~l~~ 131 (280)
T COG0656 57 VGEAIKESGVPREELFITTKVWP----SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-KYVVIEETWKALEELVD 131 (280)
T ss_pred HHHHHHhcCCCHHHeEEEeecCC----ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-cCccHHHHHHHHHHHHh
Confidence 79999998899999999999998 45678999999999999999999999999999532 11116799999999999
Q ss_pred cCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccc-cCCCCCCCCC
Q 025396 82 AGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGL-LTDNGPPEWH 160 (253)
Q Consensus 82 ~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~-l~~~~~~~~~ 160 (253)
+|+||+||||||+.++++++++.. .+.++.||+.|+...++. ++++||+++||.+++|+||+.|. +...
T Consensus 132 ~G~ir~IGVSNF~~~~L~~l~~~~---~~~p~~NQIe~hp~~~q~-el~~~~~~~gI~v~AysPL~~g~~l~~~------ 201 (280)
T COG0656 132 EGLIRAIGVSNFGVEHLEELLSLA---KVKPAVNQIEYHPYLRQP-ELLPFCQRHGIAVEAYSPLAKGGKLLDN------ 201 (280)
T ss_pred cCCccEEEeeCCCHHHHHHHHHhc---CCCCceEEEEeccCCCcH-HHHHHHHHcCCEEEEECCcccccccccC------
Confidence 999999999999999999999984 667788899988887765 49999999999999999999643 3221
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHhcc
Q 025396 161 PASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELALFGKDQEALTEVEAILKP 240 (253)
Q Consensus 161 ~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~i~~~~~~ 240 (253)
..+.++|++||.|++|++|||++++|.+ +||++++++|++||++++ +|.|++++|++|+++...
T Consensus 202 ----------~~l~~Ia~k~g~t~AQv~L~W~i~~gv~--~Ipks~~~~ri~eN~~~~----~f~Ls~ed~~~i~~l~~~ 265 (280)
T COG0656 202 ----------PVLAEIAKKYGKTPAQVALRWHIQRGVI--VIPKSTTPERIRENLAAF----DFELSEEDMAAIDALDRG 265 (280)
T ss_pred ----------hHHHHHHHHhCCCHHHHHHHHHHhCCcE--EecCCCCHHHHHHHHhhh----cCCCCHHHHHHHHhhccc
Confidence 2589999999999999999999999966 999999999999999987 225699999999999876
Q ss_pred CCC
Q 025396 241 VKN 243 (253)
Q Consensus 241 ~~~ 243 (253)
...
T Consensus 266 ~~~ 268 (280)
T COG0656 266 YGR 268 (280)
T ss_pred cCc
Confidence 543
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=4.3e-46 Score=321.19 Aligned_cols=230 Identities=29% Similarity=0.476 Sum_probs=199.4
Q ss_pred CcchhhhhcCCCCCcEEEEeccccccC--C----CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHH
Q 025396 1 MLGKALKAAGVPRNEYIVSTKCGRYVD--G----FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIP 74 (253)
Q Consensus 1 ~lG~al~~~~~~R~~~~I~tK~~~~~~--~----~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~ 74 (253)
+||+||+.++. |++++|+||++.... + .++++++|+++++.||+||||||||||++|+||. ..+.+++++
T Consensus 64 ilG~~l~~~~~-Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~---~~p~~e~~~ 139 (316)
T COG0667 64 ILGEALKERGR-RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDP---ETPIEETLE 139 (316)
T ss_pred HHHHHHhccCC-CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCC---CCCHHHHHH
Confidence 48999996654 999999999988432 1 4679999999999999999999999999999953 577899999
Q ss_pred HHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHh-hHHHHHHhcCCeEEecccccccccCC
Q 025396 75 ALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLE-DLLPYLKSKGVGVISASPLAMGLLTD 153 (253)
Q Consensus 75 aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~-~~~~~~~~~gi~v~~~~pl~~G~l~~ 153 (253)
+|.+++++|||++||+||++.+++.++.+.. ..+..+|..||+.+++.+ +++++|+++||++++|+||++|+|++
T Consensus 140 aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~----~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltg 215 (316)
T COG0667 140 ALDELVREGKIRYIGVSNYSAEQIAEALAVA----APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTG 215 (316)
T ss_pred HHHHHHHcCCeeEEEecCCCHHHHHHHHHhc----CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCC
Confidence 9999999999999999999999999998874 456777899999987655 59999999999999999999999999
Q ss_pred CCCCC---CC-----C----CCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhh
Q 025396 154 NGPPE---WH-----P----ASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASEL 221 (253)
Q Consensus 154 ~~~~~---~~-----~----~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~ 221 (253)
++.+. .+ . ..+.....+..+.++|+++|.|++|+||+|++++|.|+++|+|+++++|+++|++++. .
T Consensus 216 k~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~-~ 294 (316)
T COG0667 216 KYLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALD-I 294 (316)
T ss_pred CcCCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhc-C
Confidence 98762 10 0 1244567778899999999999999999999999999999999999999999999982 2
Q ss_pred hhcCCCHHHHHHHHHHhccCC
Q 025396 222 ALFGKDQEALTEVEAILKPVK 242 (253)
Q Consensus 222 ~~~~l~~~~~~~i~~~~~~~~ 242 (253)
.|+++++++|.+......
T Consensus 295 ---~L~~~~~~~l~~~~~~~~ 312 (316)
T COG0667 295 ---KLSEEELAALDEISAEEP 312 (316)
T ss_pred ---CCCHHHHHHHHHHhhhcc
Confidence 469999999998886443
No 4
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1e-45 Score=313.82 Aligned_cols=235 Identities=28% Similarity=0.431 Sum_probs=206.2
Q ss_pred CcchhhhhcCCCCCcEEEEeccccccC---CCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHH
Q 025396 1 MLGKALKAAGVPRNEYIVSTKCGRYVD---GFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQ 77 (253)
Q Consensus 1 ~lG~al~~~~~~R~~~~I~tK~~~~~~---~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~ 77 (253)
++|++|++++.+|++++|+||++.... ....++..++..++.|+++|+++|||+|++||+ |...++++++++|.
T Consensus 75 llg~~i~~~~~~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~---D~~~piee~m~aL~ 151 (336)
T KOG1575|consen 75 LLGEFIKSRGWRRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRW---DPMVPIEETMRALT 151 (336)
T ss_pred HHHHHHHhcCCcCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEccc---CCCCCHHHHHHHHH
Confidence 479999999889999999999988442 156788999999999999999999999999999 55678999999999
Q ss_pred HHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHh--hHHHHHHhcCCeEEecccccccccCCCC
Q 025396 78 KQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLE--DLLPYLKSKGVGVISASPLAMGLLTDNG 155 (253)
Q Consensus 78 ~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~--~~~~~~~~~gi~v~~~~pl~~G~l~~~~ 155 (253)
+++++|||+|||+|+++.+++.++..... +.++.+|+.||+..++.+ +++++|++.||++++|+||++|+||+++
T Consensus 152 ~lve~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~ 228 (336)
T KOG1575|consen 152 DLVEQGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKY 228 (336)
T ss_pred HHHhcCceEEEEeccCCHHHHHHHHHhcC---CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCc
Confidence 99999999999999999999999999863 667888999999888743 5999999999999999999999999987
Q ss_pred CCCC--------------CCCC---HHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHH
Q 025396 156 PPEW--------------HPAS---PELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAA 218 (253)
Q Consensus 156 ~~~~--------------~~~~---~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~ 218 (253)
.... .+.. ......++++.++|+++|+|++|+||+|+++++.|++||||+++++|++||++|+
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al 308 (336)
T KOG1575|consen 229 KLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGAL 308 (336)
T ss_pred ccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhh
Confidence 6421 0111 4466788899999999999999999999999999999999999999999999988
Q ss_pred HhhhhcCCCHHHHHHHHHHhccCCCCC
Q 025396 219 SELALFGKDQEALTEVEAILKPVKNQT 245 (253)
Q Consensus 219 ~~~~~~~l~~~~~~~i~~~~~~~~~~~ 245 (253)
.. .|+++++.+|++++.+.....
T Consensus 309 ~~----~Lt~e~~~~l~~~~~~~~~~~ 331 (336)
T KOG1575|consen 309 SV----KLTPEEIKELEEIIDKILGFG 331 (336)
T ss_pred hc----cCCHHHHHHHHHhhccccCcC
Confidence 22 469999999999998765543
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=9.2e-45 Score=314.66 Aligned_cols=233 Identities=24% Similarity=0.324 Sum_probs=191.0
Q ss_pred CcchhhhhcCCCCCcEEEEecccccc---CCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHH
Q 025396 1 MLGKALKAAGVPRNEYIVSTKCGRYV---DGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQ 77 (253)
Q Consensus 1 ~lG~al~~~~~~R~~~~I~tK~~~~~---~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~ 77 (253)
+||+||++.+.+|+++||+||+++.. ...+++++.+++++++||++||+||+|+|++|+|+. ..+.+++|++|+
T Consensus 60 ~lG~~l~~~~~~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~---~~~~~e~~~aL~ 136 (317)
T TIGR01293 60 VLGNILKKKGWRRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDP---NTPMEETVRAMT 136 (317)
T ss_pred HHHHHHHhcCCCcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCC---CCCHHHHHHHHH
Confidence 47999987666799999999986421 113468999999999999999999999999999953 345789999999
Q ss_pred HHHHcCCccEEEecCCcHHHHHHHHHhC-CCCCcceEEecCCCCCCcccH--hhHHHHHHhcCCeEEecccccccccCCC
Q 025396 78 KQKEAGKIRFIGITGLPLEIFTYVLDRM-PPGAVDVILSYCHYSINDSTL--EDLLPYLKSKGVGVISASPLAMGLLTDN 154 (253)
Q Consensus 78 ~l~~~G~i~~iGvsn~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~~G~l~~~ 154 (253)
+++++||||+||+|||+.+++.++.... ..+.+.+..+|+.||+..++. .+++++|+++||++++|+||++|+|+++
T Consensus 137 ~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~ 216 (317)
T TIGR01293 137 YVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGK 216 (317)
T ss_pred HHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCC
Confidence 9999999999999999999988775432 112355667899999988753 3699999999999999999999999988
Q ss_pred CCCCCCCC-------------------CHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHH
Q 025396 155 GPPEWHPA-------------------SPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENV 215 (253)
Q Consensus 155 ~~~~~~~~-------------------~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~ 215 (253)
+....... .......++.+.++|+++|+|++|+||+|++++|.|+++|+|+++++|+++|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~ 296 (317)
T TIGR01293 217 YDSGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENL 296 (317)
T ss_pred CCCCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHH
Confidence 74321100 01234556789999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHh
Q 025396 216 TAASELALFGKDQEALTEVEAIL 238 (253)
Q Consensus 216 ~a~~~~~~~~l~~~~~~~i~~~~ 238 (253)
+++.. .++|+++++++|++++
T Consensus 297 ~a~~~--~~~Ls~e~~~~l~~~~ 317 (317)
T TIGR01293 297 GSLQV--LPKLSSSIIHEIDSIL 317 (317)
T ss_pred HHhhc--cCCCCHHHHHHHHhhC
Confidence 98742 1267999999998864
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=7.9e-45 Score=318.31 Aligned_cols=241 Identities=26% Similarity=0.418 Sum_probs=196.8
Q ss_pred Ccchhhhhc-CCCCCcEEEEeccccc--cC--CCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHH
Q 025396 1 MLGKALKAA-GVPRNEYIVSTKCGRY--VD--GFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPA 75 (253)
Q Consensus 1 ~lG~al~~~-~~~R~~~~I~tK~~~~--~~--~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~a 75 (253)
+||++|++. +..|+++||+||++.. .. +.+.+++.+++++++||++||+||||+|++|+|+. ..+.+++|++
T Consensus 76 ~lG~~l~~~~~~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~---~~~~~e~~~a 152 (346)
T PRK09912 76 NFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDE---NTPMEETASA 152 (346)
T ss_pred HHHHHHHhcccCCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCC---CCCHHHHHHH
Confidence 379999854 2359999999998752 11 12467999999999999999999999999999953 3567899999
Q ss_pred HHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccH--hhHHHHHHhcCCeEEecccccccccCC
Q 025396 76 LQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTL--EDLLPYLKSKGVGVISASPLAMGLLTD 153 (253)
Q Consensus 76 L~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~~G~l~~ 153 (253)
|++|+++|||++||||||+++++.++.+......+.+..+|+.||+.++.. .+++++|+++||++++|+||++|+|++
T Consensus 153 l~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~ 232 (346)
T PRK09912 153 LAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTG 232 (346)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccC
Confidence 999999999999999999999988776632212345667899999988753 369999999999999999999999998
Q ss_pred CCCCCCCC------------------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHH
Q 025396 154 NGPPEWHP------------------ASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENV 215 (253)
Q Consensus 154 ~~~~~~~~------------------~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~ 215 (253)
++.+..+. ..+...+.++.+.++|+++|+|++|+||+|++++|.|+++|+|+++++|+++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~ 312 (346)
T PRK09912 233 KYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENV 312 (346)
T ss_pred CCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHH
Confidence 76432110 012234556789999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHhccCCCCCCC
Q 025396 216 TAASELALFGKDQEALTEVEAILKPVKNQTWP 247 (253)
Q Consensus 216 ~a~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~ 247 (253)
+++..+ +|+++++++|++++++..---|.
T Consensus 313 ~a~~~~---~L~~e~~~~l~~~~~~~~~~~~~ 341 (346)
T PRK09912 313 QALNNL---TFSTEELAQIDQHIADGELNLWQ 341 (346)
T ss_pred hhhcCC---CCCHHHHHHHHHhhCccceeEee
Confidence 997545 78999999999998764444443
No 7
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=6.9e-44 Score=312.66 Aligned_cols=234 Identities=25% Similarity=0.348 Sum_probs=191.9
Q ss_pred CcchhhhhcCCCCCcEEEEeccccccC--------CCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC--------
Q 025396 1 MLGKALKAAGVPRNEYIVSTKCGRYVD--------GFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGS-------- 64 (253)
Q Consensus 1 ~lG~al~~~~~~R~~~~I~tK~~~~~~--------~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~-------- 64 (253)
+||+||++.+ +|+++||+||++.... ...++++.+++++++||++||+||||+|+||+|+...
T Consensus 68 ~iG~aL~~~~-~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~ 146 (346)
T PRK10625 68 YIGNWLAKRG-SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGY 146 (346)
T ss_pred HHHHHHhhcC-CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCccccccccccc
Confidence 3799998644 6999999999954210 0246899999999999999999999999999996310
Q ss_pred ------hhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhC-CCCCcceEEecCCCCCCcccHh-hHHHHHHhc
Q 025396 65 ------LDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRM-PPGAVDVILSYCHYSINDSTLE-DLLPYLKSK 136 (253)
Q Consensus 65 ------~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~~~~~~-~~~~~~~~~ 136 (253)
...+..++|++|++|+++|||++||+|||+.+.+.+++... ..+.+.+.++|+.||+.++..+ +++++|+++
T Consensus 147 ~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~ 226 (346)
T PRK10625 147 SWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYE 226 (346)
T ss_pred ccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHc
Confidence 12357899999999999999999999999999988776532 1123467788999998876644 799999999
Q ss_pred CCeEEecccccccccCCCCCCCCCCC--------------CHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEe
Q 025396 137 GVGVISASPLAMGLLTDNGPPEWHPA--------------SPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVL 202 (253)
Q Consensus 137 gi~v~~~~pl~~G~l~~~~~~~~~~~--------------~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl 202 (253)
||++++|+||++|+|++++.....+. .+......+.+.++|+++|.|++|+||+|++++|.|+++|
T Consensus 227 gi~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I 306 (346)
T PRK10625 227 GVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTL 306 (346)
T ss_pred CCeEEEeccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEE
Confidence 99999999999999998764322111 1234556788999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHhc
Q 025396 203 VGMNSVKQVQENVTAASELALFGKDQEALTEVEAILK 239 (253)
Q Consensus 203 ~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~i~~~~~ 239 (253)
+|+++++|+++|++++. . +|+++++++|+++.+
T Consensus 307 ~G~~~~~~l~en~~a~~-~---~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 307 LGATTMEQLKTNIESLH-L---TLSEEVLAEIEAVHQ 339 (346)
T ss_pred eCCCCHHHHHHHHhhcc-C---CCCHHHHHHHHHHHh
Confidence 99999999999999873 3 789999999999874
No 8
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=8.5e-44 Score=296.90 Aligned_cols=214 Identities=24% Similarity=0.306 Sum_probs=176.1
Q ss_pred cchhhhhc----CCCCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCC----------C---
Q 025396 2 LGKALKAA----GVPRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFG----------S--- 64 (253)
Q Consensus 2 lG~al~~~----~~~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~----------~--- 64 (253)
+|+||++. +++|+++||+||+|+ ..+.++.++.++++||++||+||+|||++|||-.. +
T Consensus 57 vG~aik~~i~~~~v~RediFiTSKlw~----~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~ 132 (300)
T KOG1577|consen 57 VGEAIKELLAEGGVKREDIFITSKLWP----TDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNY 132 (300)
T ss_pred HHHHHHHHhhhCCcchhhheeeeccCc----cccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCccccccccc
Confidence 58888754 789999999999998 45789999999999999999999999999999532 0
Q ss_pred hhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecc
Q 025396 65 LDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 65 ~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 144 (253)
.+.+..++|++|+++++.|++|+||||||+..++++++....+ .+.+.++.+++.+.. .+++++|+++||.|.||+
T Consensus 133 ~~~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki-~P~vnQvE~HP~~~Q---~~L~~fCk~~~I~v~AYS 208 (300)
T KOG1577|consen 133 DDVDRIETWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKI-KPAVNQVECHPYLQQ---KKLVEFCKSKGIVVTAYS 208 (300)
T ss_pred ccchHHHHHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCC-CCccceeeccCCcCh---HHHHHHHhhCCcEEEEec
Confidence 1234678999999999999999999999999999999998743 344444445554444 479999999999999999
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhhhc
Q 025396 145 PLAMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELALF 224 (253)
Q Consensus 145 pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~~~ 224 (253)
||+++-- .. .... -+.+.+||++|+.|++|++|||+++++.+ |||.++|++|++||++++ . |
T Consensus 209 pLg~~~~-~~----~ll~-------~~~l~~iA~K~~kt~aQIlLrw~~q~g~~--vipKS~~~~Ri~eN~~vf-d---f 270 (300)
T KOG1577|consen 209 PLGSPGR-GS----DLLE-------DPVLKEIAKKYNKTPAQILLRWALQRGVS--VIPKSSNPERIKENFKVF-D---F 270 (300)
T ss_pred CCCCCCC-cc----cccc-------CHHHHHHHHHhCCCHHHHHHHHHHhCCcE--EEeccCCHHHHHHHHhhc-c---c
Confidence 9997532 00 0001 13479999999999999999999999988 999999999999999965 2 3
Q ss_pred CCCHHHHHHHHHHhccC
Q 025396 225 GKDQEALTEVEAILKPV 241 (253)
Q Consensus 225 ~l~~~~~~~i~~~~~~~ 241 (253)
.||++||+.|.......
T Consensus 271 ~Lt~ed~~~i~~~~~~~ 287 (300)
T KOG1577|consen 271 ELTEEDMKKLDSLNSNE 287 (300)
T ss_pred cCCHHHHHHHhhccccc
Confidence 77999999999766544
No 9
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=5e-43 Score=296.80 Aligned_cols=210 Identities=21% Similarity=0.329 Sum_probs=179.0
Q ss_pred CcchhhhhcCCCCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHH
Q 025396 1 MLGKALKAAGVPRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQK 80 (253)
Q Consensus 1 ~lG~al~~~~~~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~ 80 (253)
++|+||++.+++|+++||+||+++ ...+++.+++++++||++||+||+|+|++|+|+..+ ..+..++|++|++++
T Consensus 44 ~lG~al~~~~~~R~~v~i~TK~~~----~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~-~~~~~~~~~~l~~l~ 118 (267)
T PRK11172 44 AVGQAIAESGVPRDELFITTKIWI----DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPND-EVSVEEFMQALLEAK 118 (267)
T ss_pred HHHHHHHHcCCChhHeEEEEEeCC----CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCC-CCCHHHHHHHHHHHH
Confidence 379999977778999999999964 346799999999999999999999999999996422 235678999999999
Q ss_pred HcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccccCCCCCCCCC
Q 025396 81 EAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWH 160 (253)
Q Consensus 81 ~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~~~ 160 (253)
++||||+||||||+.+++.++++..... .+..+|+.|++..+. .+++++|+++||++++|+||++|.+...
T Consensus 119 ~~Gkir~iGvSn~~~~~l~~~~~~~~~~--~~~~~Q~~~~~~~~~-~~ll~~~~~~gi~v~a~spl~~G~~~~~------ 189 (267)
T PRK11172 119 KQGLTREIGISNFTIALMKQAIAAVGAE--NIATNQIELSPYLQN-RKVVAFAKEHGIHVTSYMTLAYGKVLKD------ 189 (267)
T ss_pred HCCCCCEEEEccCCHHHHHHHHHhcCCC--CCeEEeeecCCCCCc-HHHHHHHHHCCCEEEEECCCCCCcccCC------
Confidence 9999999999999999999998865322 345667777766654 5899999999999999999999865421
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHhcc
Q 025396 161 PASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELALFGKDQEALTEVEAILKP 240 (253)
Q Consensus 161 ~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~i~~~~~~ 240 (253)
..+.++|+++|.|++|+||+|+++++.+ +|+|+++++|+++|++++. . +||++++++|+++..+
T Consensus 190 ----------~~l~~~a~~~~~s~aqval~w~l~~~~~--~i~g~~~~~~l~~n~~~~~-~---~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 ----------PVIARIAAKHNATPAQVILAWAMQLGYS--VIPSSTKRENLASNLLAQD-L---QLDAEDMAAIAALDRN 253 (267)
T ss_pred ----------HHHHHHHHHhCCCHHHHHHHHHHhCCCE--eecCCCCHHHHHHHHhhcC-C---CcCHHHHHHHhhhccC
Confidence 2478899999999999999999999854 9999999999999999863 3 7899999999998754
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3e-43 Score=300.68 Aligned_cols=229 Identities=31% Similarity=0.473 Sum_probs=186.2
Q ss_pred CcchhhhhcCCCCCcEEEEecccc-ccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHH
Q 025396 1 MLGKALKAAGVPRNEYIVSTKCGR-YVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQ 79 (253)
Q Consensus 1 ~lG~al~~~~~~R~~~~I~tK~~~-~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l 79 (253)
+||++|++.+.+|+++||+||+.. .......+++.+++++++||++||+||+|+|+||+|+... ....++|++|+++
T Consensus 48 ~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~--~~~~~~~~~l~~l 125 (283)
T PF00248_consen 48 ILGRALRKSRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSE--DALEEVWEALEEL 125 (283)
T ss_dssp HHHHHHHHTSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTS--SHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhccccccccccc--cccchhhhhhhhc
Confidence 379999976678999999999922 1112568999999999999999999999999999996432 2378999999999
Q ss_pred HHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCc-ccHhhHHHHHHhcCCeEEecccccccccCCCCCCC
Q 025396 80 KEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSIND-STLEDLLPYLKSKGVGVISASPLAMGLLTDNGPPE 158 (253)
Q Consensus 80 ~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~ 158 (253)
+++|+|++||||||+.+.+.++.... .+.+.++|++||+.. ....+++++|+++||++++|+|+++|+|++++...
T Consensus 126 ~~~G~ir~iGvs~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~ 202 (283)
T PF00248_consen 126 KKEGKIRHIGVSNFSPEQLEAALKIG---SIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSP 202 (283)
T ss_dssp HHTTSEEEEEEES--HHHHHHHHTCT---SS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTT
T ss_pred cccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccCccccccccC
Confidence 99999999999999999999884432 567888889998884 33358999999999999999999999999887655
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHH
Q 025396 159 WHPASPE----LKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELALFGKDQEALTEV 234 (253)
Q Consensus 159 ~~~~~~~----~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~i 234 (253)
..+.... .....+.+.++++++|.|++|+||||+++++.+.++++|+++++|+++|++++ .. +||++++++|
T Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~-~~---~L~~~~~~~i 278 (283)
T PF00248_consen 203 PPPPSRASLRDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAAL-DF---PLTEEELAEI 278 (283)
T ss_dssp TTSTTTSGSSTHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGS-SS---G--HHHHHHH
T ss_pred CCcccccccchhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHh-CC---CCCHHHHHHH
Confidence 4333211 34566778999999999999999999999999999999999999999999987 32 6899999999
Q ss_pred HHHh
Q 025396 235 EAIL 238 (253)
Q Consensus 235 ~~~~ 238 (253)
++++
T Consensus 279 ~~~~ 282 (283)
T PF00248_consen 279 DQIL 282 (283)
T ss_dssp HTTH
T ss_pred Hhhh
Confidence 9875
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=3.4e-41 Score=288.27 Aligned_cols=223 Identities=33% Similarity=0.533 Sum_probs=188.9
Q ss_pred CcchhhhhcCCCCCcEEEEeccccccC-CCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHH
Q 025396 1 MLGKALKAAGVPRNEYIVSTKCGRYVD-GFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQ 79 (253)
Q Consensus 1 ~lG~al~~~~~~R~~~~I~tK~~~~~~-~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l 79 (253)
.+|+||+..+ .|+++||+||+++... ..+.+++.+++++++||++|+++|+|+|+||+|+... ....++|++|+++
T Consensus 60 ~lG~al~~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~--~~~~~~~~~l~~l 136 (285)
T cd06660 60 LLGEALKERG-PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDT--PDIEETLRALEEL 136 (285)
T ss_pred HHHHHHhccC-CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCC--CCHHHHHHHHHHH
Confidence 3799999644 5999999999987321 1346899999999999999999999999999996432 2378999999999
Q ss_pred HHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHh-hHHHHHHhcCCeEEecccccccccCCCCCCC
Q 025396 80 KEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLE-DLLPYLKSKGVGVISASPLAMGLLTDNGPPE 158 (253)
Q Consensus 80 ~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~-~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~ 158 (253)
+++|+|++||||||+.+.+.++++.. .+.+.++|++||+..+... +++++|+++||++++|+||++|.++++..+.
T Consensus 137 ~~~G~ir~iGvS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~ 213 (285)
T cd06660 137 VKEGKIRAIGVSNFSAEQLEEALAAA---GVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPG 213 (285)
T ss_pred HHcCCccEEEeeCCCHHHHHHHHHhh---CCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCC
Confidence 99999999999999999999999875 2345556788888777655 6999999999999999999999998776554
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHH
Q 025396 159 WHPASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELALFGKDQEALTEVEA 236 (253)
Q Consensus 159 ~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~i~~ 236 (253)
....... ....+..++++++.|++|+|++|++++|.++++++|+++++|+++|++++ .. +|++++++.|++
T Consensus 214 ~~~~~~~---~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~-~~---~L~~~~~~~l~~ 284 (285)
T cd06660 214 APPPEGD---LLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAAL-DF---ELSDEDLAALDA 284 (285)
T ss_pred CCCChhh---HHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhc-cC---CCCHHHHHHHhh
Confidence 3332222 45678899999999999999999999999999999999999999999987 33 789999999875
No 12
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3.5e-40 Score=280.37 Aligned_cols=207 Identities=23% Similarity=0.293 Sum_probs=173.8
Q ss_pred cchhhhhcCCCCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHH
Q 025396 2 LGKALKAAGVPRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKE 81 (253)
Q Consensus 2 lG~al~~~~~~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~ 81 (253)
+|+||++.+++|+++||+||++. .+++.+++++++||++||+||+|+|+||+|+.. .....++|++|+++++
T Consensus 57 lG~al~~~~~~R~~~~i~tK~~~------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~--~~~~~~~~~~l~~l~~ 128 (275)
T PRK11565 57 VGKALKEASVAREELFITTKLWN------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPA--IDHYVEAWKGMIELQK 128 (275)
T ss_pred HHHHHHHcCCCHHHEEEEEEecC------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCC--cCcHHHHHHHHHHHHH
Confidence 79999976777999999999964 357799999999999999999999999999532 1235799999999999
Q ss_pred cCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccccCCCCCCCCCC
Q 025396 82 AGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHP 161 (253)
Q Consensus 82 ~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~~~~ 161 (253)
+|+||+||||||+.+++.++..... +.+..+|+.++...+. .+++++|+++||++++|+|+++|.. .. .
T Consensus 129 ~G~ir~iGvSn~~~~~l~~~~~~~~---v~~~~~Q~~~~~~~~~-~~~~~~~~~~~i~~~a~spl~~G~~-~~----~-- 197 (275)
T PRK11565 129 EGLIKSIGVCNFQIHHLQRLIDETG---VTPVINQIELHPLMQQ-RQLHAWNATHKIQTESWSPLAQGGK-GV----F-- 197 (275)
T ss_pred cCCeeEEeeccCCHHHHHHHHHhCC---CCceeeeeecCCccch-HHHHHHHHHCCCEEEEEccCCCCCc-cc----c--
Confidence 9999999999999999999987543 3455667777765544 5799999999999999999987631 00 0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHhcc
Q 025396 162 ASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELALFGKDQEALTEVEAILKP 240 (253)
Q Consensus 162 ~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~i~~~~~~ 240 (253)
. .+.+.++|+++|.|++|+||||+++++.+ +|+|+++++|+++|++++. + +|+++++++|+++...
T Consensus 198 ~-------~~~l~~ia~~~g~s~aq~aL~w~l~~~~~--~I~g~~~~~~i~~n~~a~~-~---~Ls~~~~~~i~~~~~~ 263 (275)
T PRK11565 198 D-------QKVIRDLADKYGKTPAQIVIRWHLDSGLV--VIPKSVTPSRIAENFDVFD-F---RLDKDELGEIAKLDQG 263 (275)
T ss_pred c-------CHHHHHHHHHhCCCHHHHHHHHHHcCCCE--eeCCCCCHHHHHHHHhccC-C---CcCHHHHHHHHhhccc
Confidence 0 14578999999999999999999999866 8999999999999999873 3 6899999999998753
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.9e-39 Score=276.12 Aligned_cols=210 Identities=20% Similarity=0.301 Sum_probs=172.9
Q ss_pred cchhhhhcCCCCCcEEEEeccccccC-----CCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC--hhhhHHhHHH
Q 025396 2 LGKALKAAGVPRNEYIVSTKCGRYVD-----GFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGS--LDQIVNETIP 74 (253)
Q Consensus 2 lG~al~~~~~~R~~~~I~tK~~~~~~-----~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~--~~~~~~~~~~ 74 (253)
+|++++ + .|+++||+||++.... ....+++.+++++++||++||+||||+|++|+++..+ ......++|+
T Consensus 72 lg~~l~--~-~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~ 148 (290)
T PRK10376 72 IREALH--P-YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLT 148 (290)
T ss_pred HHHHHh--c-CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHH
Confidence 677886 3 4999999999875211 1356899999999999999999999999999853111 1134678999
Q ss_pred HHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccccCCC
Q 025396 75 ALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLLTDN 154 (253)
Q Consensus 75 aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l~~~ 154 (253)
+|++++++||||+||||||+.+.+.++.+.. . +..+|++||+..+..++++++|+++||++++|+||+++..
T Consensus 149 ~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~---~--~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g~~~--- 220 (290)
T PRK10376 149 VLAELQRQGLVRHIGLSNVTPTQVAEARKIA---E--IVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGGFTP--- 220 (290)
T ss_pred HHHHHHHCCceeEEEecCCCHHHHHHHHhhC---C--eEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCCCCh---
Confidence 9999999999999999999999999888764 3 3556788888776656899999999999999999974310
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHH
Q 025396 155 GPPEWHPASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELALFGKDQEALTEV 234 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~i 234 (253)
. ..+.+.++|+++|+|++|+||+|+++++.++++|+|+++++|+++|++++. + +|+++++++|
T Consensus 221 -------~------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~-~---~L~~e~~~~l 283 (290)
T PRK10376 221 -------L------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAE-L---VLSEEVLAEL 283 (290)
T ss_pred -------h------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhcc-C---CCCHHHHHHH
Confidence 0 124678999999999999999999998766689999999999999999863 3 6799999999
Q ss_pred HHHhc
Q 025396 235 EAILK 239 (253)
Q Consensus 235 ~~~~~ 239 (253)
+++.+
T Consensus 284 ~~~~~ 288 (290)
T PRK10376 284 DGIAR 288 (290)
T ss_pred HHHHh
Confidence 98764
No 14
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=9.8e-39 Score=258.43 Aligned_cols=249 Identities=53% Similarity=0.859 Sum_probs=223.9
Q ss_pred cchhhhhcCCCCCcEEEEeccccccCC----CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCC-ChhhhHHhHHHHH
Q 025396 2 LGKALKAAGVPRNEYIVSTKCGRYVDG----FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFG-SLDQIVNETIPAL 76 (253)
Q Consensus 2 lG~al~~~~~~R~~~~I~tK~~~~~~~----~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~-~~~~~~~~~~~aL 76 (253)
+|.+++ .+||+.+||+||++.+..+ .+++++.+++++++||++|++||+|++++|..++. +.+..+.+++.+|
T Consensus 86 lg~al~--~vPR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~L 163 (342)
T KOG1576|consen 86 LGLALK--DVPREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPAL 163 (342)
T ss_pred HHHHHh--hCChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHH
Confidence 578888 6899999999999996544 78999999999999999999999999999999864 5556678999999
Q ss_pred HHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccccCCCCC
Q 025396 77 QKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLLTDNGP 156 (253)
Q Consensus 77 ~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~ 156 (253)
++++++||||+|||+.+..+.+.++++. +++.++++.+.++|++.+...-..+++.+..|++|+.-++++.|+|+...+
T Consensus 164 e~lk~~Gk~RfiGitgypldvl~~~ae~-~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~AsalsmgLLt~~gp 242 (342)
T KOG1576|consen 164 EELKQEGKIRFIGITGYPLDVLTECAER-GKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSMGLLTNQGP 242 (342)
T ss_pred HHHHhcCceeEeeecccchHHHHHHHhc-CCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHHHHhhcCCC
Confidence 9999999999999999999999999865 456899999999999999877788899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHH
Q 025396 157 PEWHPASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELALFGKDQEALTEVEA 236 (253)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~i~~ 236 (253)
+.|.|.++++.....+..++|.+.|+..+.+|++|+++.+.+.++++|+++.++++.|+++....-.+..+++....+++
T Consensus 243 ~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~~r~ 322 (342)
T KOG1576|consen 243 PPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRILRE 322 (342)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987443222245666777789
Q ss_pred HhccCCCCCCCCCCCCC
Q 025396 237 ILKPVKNQTWPSGIHQS 253 (253)
Q Consensus 237 ~~~~~~~~~~~~~~~~~ 253 (253)
.+++.++..|.++.+++
T Consensus 323 ~~~~~kn~~W~g~~~~~ 339 (342)
T KOG1576|consen 323 ILKETKNEEWEGGILHP 339 (342)
T ss_pred HhhhhccCCCCCCCCcc
Confidence 99999999999988753
No 15
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.1e-37 Score=266.94 Aligned_cols=203 Identities=23% Similarity=0.166 Sum_probs=163.2
Q ss_pred CcchhhhhcCCCCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhH-HhHHHHHHHH
Q 025396 1 MLGKALKAAGVPRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIV-NETIPALQKQ 79 (253)
Q Consensus 1 ~lG~al~~~~~~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~-~~~~~aL~~l 79 (253)
++|++|+. ..+++++|+||.. +.+++.+++++++||++||+||||+|++|+|+.. ..+. .++|++|+++
T Consensus 61 ~lG~al~~--~~~~~~~i~tk~~------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~--~~~~~~~~~~~l~~l 130 (292)
T PRK14863 61 VLGQLIPR--PVPFRVTLSTVRA------DRGPDFVEAEARASLRRMGVERADAILVHSPTEL--FGPHGAALWERLQAL 130 (292)
T ss_pred HHhhhhcc--CCceEeecccccc------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhh--cCcchHHHHHHHHHH
Confidence 37899973 2346789999853 3468999999999999999999999999998521 1222 5789999999
Q ss_pred HHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccH--hhHHHHHHhcCCeEEecccccccccCCCCCC
Q 025396 80 KEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTL--EDLLPYLKSKGVGVISASPLAMGLLTDNGPP 157 (253)
Q Consensus 80 ~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~ 157 (253)
+++||||+||||||+++++..+.... .+++ +|+.||+.+++. .+++++|+++||++++|+||++|+|++....
T Consensus 131 ~~~Gkir~iGvSn~~~~~~~~~~~~~---~~~~--~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~ 205 (292)
T PRK14863 131 KDQGLFAKIGVSAHASDDPVGVARRF---KPDI--LQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDR 205 (292)
T ss_pred HHcCCcceEeeeccCHHHHHHHHhcC---CCCE--EEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCccc
Confidence 99999999999999999988876543 3444 677788877654 3699999999999999999999999753211
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHH
Q 025396 158 EWHPASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAAS 219 (253)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~ 219 (253)
...........+..+.+++.+++.|++|+||+|++++|.|+++|+|+++++|+++|+++..
T Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~ 266 (292)
T PRK14863 206 -VPAQLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAAS 266 (292)
T ss_pred -CccchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHh
Confidence 1111122334556678888889999999999999999999999999999999999999874
No 16
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1e-37 Score=250.68 Aligned_cols=219 Identities=21% Similarity=0.349 Sum_probs=183.4
Q ss_pred CcchhhhhcCCCCCcEEEEeccccccC--------CCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhH
Q 025396 1 MLGKALKAAGVPRNEYIVSTKCGRYVD--------GFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNET 72 (253)
Q Consensus 1 ~lG~al~~~~~~R~~~~I~tK~~~~~~--------~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~ 72 (253)
++|.||+...--|+++.|+||.|...+ -.+.+.++|..++++||++|+|||+|+++||+||. -+..+++
T Consensus 62 ~fg~aL~l~p~lRekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDp---Lmd~eeV 138 (298)
T COG4989 62 LFGEALKLAPGLREKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDP---LMDAEEV 138 (298)
T ss_pred HHHHHHhcChhhhhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcc---cCCHHHH
Confidence 478999866546999999999998543 16789999999999999999999999999999954 3557899
Q ss_pred HHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccH--hhHHHHHHhcCCeEEecccccccc
Q 025396 73 IPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTL--EDLLPYLKSKGVGVISASPLAMGL 150 (253)
Q Consensus 73 ~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~~G~ 150 (253)
.+|+..|++.||||++|||||++.+++-+.+.. ....+.||+..+..+... .+.+++|+++.|..++||||++|-
T Consensus 139 AeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l---~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~ 215 (298)
T COG4989 139 AEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRL---PFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGG 215 (298)
T ss_pred HHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhc---cchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCc
Confidence 999999999999999999999999999888877 445777888877766543 369999999999999999998774
Q ss_pred -cCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC-CCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhhhcCCCH
Q 025396 151 -LTDNGPPEWHPASPELKSACKAAAARCKEKG-KNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELALFGKDQ 228 (253)
Q Consensus 151 -l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~~~~l~~ 228 (253)
|++ .+........+..+|.++| .|.+++|++|++.+|.-..+++|+.|++++++.++|+ .+ .||.
T Consensus 216 ~F~g---------~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al-~~---~LtR 282 (298)
T COG4989 216 LFLG---------DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKAL-SL---TLTR 282 (298)
T ss_pred cccC---------CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHh-hc---cccH
Confidence 343 1233445567889999999 7999999999999998888999999999999999987 23 5688
Q ss_pred HHHHHHHHHh
Q 025396 229 EALTEVEAIL 238 (253)
Q Consensus 229 ~~~~~i~~~~ 238 (253)
++--+|...-
T Consensus 283 qqWf~Iy~Aa 292 (298)
T COG4989 283 QQWFEIYTAA 292 (298)
T ss_pred HHHHHHHHHh
Confidence 8766665543
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=244.59 Aligned_cols=214 Identities=30% Similarity=0.427 Sum_probs=174.9
Q ss_pred cchhhhhcCCCCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhH-HhHHHHHHHHH
Q 025396 2 LGKALKAAGVPRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIV-NETIPALQKQK 80 (253)
Q Consensus 2 lG~al~~~~~~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~-~~~~~aL~~l~ 80 (253)
+|+||++ + .|++++++||+..+. --+++.+++-++++|++|++||+|+|+||+.+...++... .++++++++++
T Consensus 66 lgkaL~~-~-~Rekv~LaTKlp~~~---~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak 140 (391)
T COG1453 66 LGKALKD-G-YREKVKLATKLPSWP---VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAK 140 (391)
T ss_pred HHHHhhh-c-ccceEEEEeecCCcc---ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHH
Confidence 7999996 4 599999999998643 3578999999999999999999999999999754443222 35899999999
Q ss_pred HcCCccEEEecCC-cHHHHHHHHHhCCCCCcceEEecCCCCCCccc-HhhHHHHHHhcCCeEEecccccccccCCCCCCC
Q 025396 81 EAGKIRFIGITGL-PLEIFTYVLDRMPPGAVDVILSYCHYSINDST-LEDLLPYLKSKGVGVISASPLAMGLLTDNGPPE 158 (253)
Q Consensus 81 ~~G~i~~iGvsn~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~ 158 (253)
++|+||++|+|.| +.+.+.+++++. .++|+++|.+|-..+.. ..+.+++|.++|++|+.++|+.+|-|+.+.+
T Consensus 141 ~eGkIr~~GFSfHgs~e~~~~iv~a~---~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP-- 215 (391)
T COG1453 141 AEGKIRNAGFSFHGSTEVFKEIVDAY---PWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVP-- 215 (391)
T ss_pred hcCcEEEeeecCCCCHHHHHHHHhcC---CcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCCC--
Confidence 9999999999999 778889999986 57888777665333222 2389999999999999999999998876432
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhC--CCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHH
Q 025396 159 WHPASPELKSACKAAAARCKEKG--KNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELALFGKDQEALTEVEA 236 (253)
Q Consensus 159 ~~~~~~~~~~~~~~l~~la~~~~--~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~i~~ 236 (253)
.++.++..+.. .||+.+|+||++++|.|+++++|+++++|++||++.+..+.- +||+++++-|.+
T Consensus 216 ------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p-~lte~e~~il~~ 282 (391)
T COG1453 216 ------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEP-SLTEEELQILEK 282 (391)
T ss_pred ------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCC-ccCHHHHHHHHH
Confidence 24667777665 689999999999999999999999999999999999966631 377877666655
Q ss_pred Hh
Q 025396 237 IL 238 (253)
Q Consensus 237 ~~ 238 (253)
+.
T Consensus 283 v~ 284 (391)
T COG1453 283 VE 284 (391)
T ss_pred HH
Confidence 44
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.22 E-value=3e-06 Score=68.83 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=62.8
Q ss_pred HHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecc
Q 025396 69 VNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 144 (253)
..+.|+.||+++.+|+|..||||.|+..+++++++..+ +.+..+|++..-...-++++.++|.+|+|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saq---VvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQ---VVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhc---cccccceeeccccccCCHHHHHHhhhcceeeeecC
Confidence 45789999999999999999999999999999999874 44556678876666556799999999999998765
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=91.04 E-value=1.9 Score=34.62 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=71.8
Q ss_pred CCCHHHHHHHH-----------HHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHH
Q 025396 30 DFSAERVTRSI-----------DESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIF 98 (253)
Q Consensus 30 ~~~~~~i~~~l-----------~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~ 98 (253)
+.+.+.+.+++ ++.|..+.-+.+|.+.|... -..+....+.|+++.+-|+-.=+++.||.-+..
T Consensus 43 Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt-----LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~ 117 (193)
T PF07021_consen 43 EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT-----LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRN 117 (193)
T ss_pred ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH-----HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHH
Confidence 45566565555 45566666777777777642 122345566688888999999999999977666
Q ss_pred HHHHHhCCCCCcceEEecCCCC------CCcccHhhHHHHHHhcCCeEEecccccccc
Q 025396 99 TYVLDRMPPGAVDVILSYCHYS------INDSTLEDLLPYLKSKGVGVISASPLAMGL 150 (253)
Q Consensus 99 ~~~~~~~~~~~~~~~~~q~~~~------~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~ 150 (253)
..-+-..+ .+. +.-.++|. +--....+..++|++.|+.+.-..++.++.
T Consensus 118 R~~l~~~G--rmP-vt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 118 RLQLLLRG--RMP-VTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHHHhcC--CCC-CCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 54443211 111 11123333 322334689999999999999888887654
No 20
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=87.94 E-value=11 Score=33.63 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCC
Q 025396 29 FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPG 108 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~ 108 (253)
.+++.+.+.+.+++..+. -+|.+.+|. .-..+.++.++++|+ ..|+-+-.-.-+...+-..+.
T Consensus 135 ~~mt~d~~~~~ie~qa~d----GVDfmTiH~----------Gi~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~~- 197 (423)
T TIGR00190 135 EDMDEDDMFRAIEKQAKD----GVDFMTIHA----------GVLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHHK- 197 (423)
T ss_pred hhCCHHHHHHHHHHHHHh----CCCEEEEcc----------chhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcCC-
Confidence 457888888888888875 488999996 334677888888884 567777666655554443211
Q ss_pred CcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccccccccc
Q 025396 109 AVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLL 151 (253)
Q Consensus 109 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l 151 (253)
++ .+..+..++++.|+++++.+.---.|.-|-+
T Consensus 198 -------EN---Plye~fD~lLeI~~~yDVtlSLGDglRPG~i 230 (423)
T TIGR00190 198 -------EN---PLYKNFDYILEIAKEYDVTLSLGDGLRPGCI 230 (423)
T ss_pred -------cC---chHHHHHHHHHHHHHhCeeeeccCCcCCCcc
Confidence 12 2223335899999999999874333433433
No 21
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=87.84 E-value=15 Score=30.88 Aligned_cols=145 Identities=15% Similarity=0.168 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEE-eccCCCC--ChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCC
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQ-CHDIEFG--SLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMP 106 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~-lH~~~~~--~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~ 106 (253)
..+.+.+.+...+.+ .-|.+.||+-. =-+|+.. +.+.-...+...++.+++.-.+- +.+-+++++.++++++..
T Consensus 20 ~~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G- 96 (257)
T cd00739 20 FLSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAG- 96 (257)
T ss_pred CCCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhC-
Confidence 356666666665554 56888999853 2234322 22222334444556666653443 888899999999999872
Q ss_pred CCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccccCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHH
Q 025396 107 PGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLLTD-NGPPEWHPASPELKSACKAAAARCKEKGKNIS 185 (253)
Q Consensus 107 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l~~-~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~ 185 (253)
.+++ +..+..... +++++.++++|..++.+.. .|.-.. ...+.+...-......+++..+.+.++|++..
T Consensus 97 ---~~iI---Ndisg~~~~-~~~~~l~~~~~~~vV~m~~--~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~ 167 (257)
T cd00739 97 ---ADII---NDVSGGSDD-PAMLEVAAEYGAPLVLMHM--RGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARN 167 (257)
T ss_pred ---CCEE---EeCCCCCCC-hHHHHHHHHcCCCEEEECC--CCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333 222222211 5789999999999998543 221100 00011111112333445555566777776544
Q ss_pred H
Q 025396 186 K 186 (253)
Q Consensus 186 q 186 (253)
+
T Consensus 168 ~ 168 (257)
T cd00739 168 R 168 (257)
T ss_pred H
Confidence 4
No 22
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=86.32 E-value=16 Score=32.85 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCC
Q 025396 29 FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPG 108 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~ 108 (253)
.+++.+.+.+.|++..+. -+|.+.+|.- -..+.++.++++|+ ..|+-+-.-+-+...+...+.
T Consensus 138 ~~mt~d~~~~~ie~qa~~----GVDfmTiHcG----------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~~- 200 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAKD----GVDFMTIHCG----------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNNK- 200 (431)
T ss_pred hhCCHHHHHHHHHHHHHh----CCCEEEEccc----------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcCC-
Confidence 468888899998888875 4899999973 34567788888885 567777766655555443211
Q ss_pred CcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccccccccc
Q 025396 109 AVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLL 151 (253)
Q Consensus 109 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l 151 (253)
+ |.+..+..++++.|+++++.+.---.|..|-+
T Consensus 201 -------E---NPlye~fD~lLeI~~~yDVtlSLGDglRPG~i 233 (431)
T PRK13352 201 -------E---NPLYEHFDYLLEILKEYDVTLSLGDGLRPGCI 233 (431)
T ss_pred -------c---CchHHHHHHHHHHHHHhCeeeeccCCcCCCcc
Confidence 1 22223335899999999999874333443433
No 23
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=85.01 E-value=16 Score=31.86 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=54.2
Q ss_pred HhhCCCcccEEEecc-CCCCChhhhHHhHHHHHHHHHHcCCc-cEEEecCC---cHHHHHHHHHhCCCCCcceEEecCCC
Q 025396 45 ARLQLDYVDILQCHD-IEFGSLDQIVNETIPALQKQKEAGKI-RFIGITGL---PLEIFTYVLDRMPPGAVDVILSYCHY 119 (253)
Q Consensus 45 ~~L~~d~iDl~~lH~-~~~~~~~~~~~~~~~aL~~l~~~G~i-~~iGvsn~---~~~~~~~~~~~~~~~~~~~~~~q~~~ 119 (253)
+.+|.|+||+-+.-. |+.. +...++..+.++...+.=.+ -.|..|.. +++.++++++.++.. ..+.+..+
T Consensus 86 ~~~GAd~Idl~~~s~dp~~~--d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~--~pLInSat- 160 (319)
T PRK04452 86 EEYGADMITLHLISTDPNGK--DKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGE--RCLLGSAE- 160 (319)
T ss_pred HHhCCCEEEEECCCCCcccc--cchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCC--CCEEEECC-
Confidence 477777777654332 2110 11223333344443333222 22666643 889999999987542 22332232
Q ss_pred CCCcccHhhHHHHHHhcCCeEEeccccc
Q 025396 120 SINDSTLEDLLPYLKSKGVGVISASPLA 147 (253)
Q Consensus 120 ~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 147 (253)
..+.+.+.+.|+++|..|++.+|..
T Consensus 161 ---~en~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 161 ---EDNYKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred ---HHHHHHHHHHHHHhCCeEEEEcHHH
Confidence 2235689999999999999987553
No 24
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=80.97 E-value=30 Score=29.09 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=67.3
Q ss_pred HHHHHHcCCccEEEecC-CcHHHHHHHHHhCCCCCcceEEecCCCCCCccc-HhhHHHHHHhcCCeEEecccccccccCC
Q 025396 76 LQKQKEAGKIRFIGITG-LPLEIFTYVLDRMPPGAVDVILSYCHYSINDST-LEDLLPYLKSKGVGVISASPLAMGLLTD 153 (253)
Q Consensus 76 L~~l~~~G~i~~iGvsn-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~~~~pl~~G~l~~ 153 (253)
|.+..++|+. .+|+-. .....+.+++... .+|++.+-......+.. ...++..|+..|+..++.-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~---G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~----- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLA---GFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE----- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhc---CCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC-----
Confidence 4555566875 455433 3334555555554 58888877777665543 34688889999999988776542
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHH
Q 025396 154 NGPPEWHPASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAA 218 (253)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~ 218 (253)
...++.+|..|..-.++|-.++++++++.+++.
T Consensus 81 --------------------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 81 --------------------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred --------------------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 233566677776555778888888888877765
No 25
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=80.30 E-value=34 Score=28.72 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEE-eccCCCC--ChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCC
Q 025396 31 FSAERVTRSIDESLARLQLDYVDILQ-CHDIEFG--SLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPP 107 (253)
Q Consensus 31 ~~~~~i~~~l~~sL~~L~~d~iDl~~-lH~~~~~--~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~ 107 (253)
.+.+.+.+..++.+ .-|.+.||+-. --+|+.. +...-.......++.+++.-.+ -+.+-+++++.++++++..
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g-- 96 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAG-- 96 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhC--
Confidence 46677777766665 66889999864 2223211 1112233455666666655333 3899999999999999874
Q ss_pred CCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCH
Q 025396 108 GAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGKNI 184 (253)
Q Consensus 108 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~ 184 (253)
.+++ |-+ +..... +++++.++++|..++.+..-+.|.-.+. .+.+...-++....+.+..+.+.+.|++.
T Consensus 97 --~~iI-Ndi--s~~~~~-~~~~~l~~~~~~~vV~m~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~ 166 (258)
T cd00423 97 --ADII-NDV--SGGRGD-PEMAPLAAEYGAPVVLMHMDGTPQTMQN-NPYYADVVDEVVEFLEERVEAATEAGIPP 166 (258)
T ss_pred --CCEE-EeC--CCCCCC-hHHHHHHHHcCCCEEEECcCCCCccccc-CCCcchHHHHHHHHHHHHHHHHHHcCCCH
Confidence 2332 222 222211 4789999999999987654332221111 11112222333444455555555666543
No 26
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=78.99 E-value=35 Score=29.87 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=54.0
Q ss_pred EecCCcHHHHHHHHHhCCCCCcceEEecC-CCCCCcccHhhHHHHHHhcCC-------eEEecccccccccCCCCCCCCC
Q 025396 89 GITGLPLEIFTYVLDRMPPGAVDVILSYC-HYSINDSTLEDLLPYLKSKGV-------GVISASPLAMGLLTDNGPPEWH 160 (253)
Q Consensus 89 Gvsn~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~~~~~~~gi-------~v~~~~pl~~G~l~~~~~~~~~ 160 (253)
|+--++.+.+.++++.+....+++...++ -++..+.+.+.+++||++.|. +++-|-|...|.-- -..
T Consensus 235 G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp----~~~- 309 (414)
T COG2100 235 GRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKP----VIA- 309 (414)
T ss_pred CccccCHHHHHHHHHHHHhCCCCEEEeeeecCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCc----ccc-
Confidence 55556667776666654434677766553 356777777899999999883 45555555444311 000
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCH
Q 025396 161 PASPELKSACKAAAARCKEKGKNI 184 (253)
Q Consensus 161 ~~~~~~~~~~~~l~~la~~~~~s~ 184 (253)
..-....-+..|+++-+++|+.+
T Consensus 310 -k~~~fkeFYrwLrelEketg~kp 332 (414)
T COG2100 310 -KVWPFKEFYRWLRELEKETGVKP 332 (414)
T ss_pred -ccCcHHHHHHHHHHHHHHhCCCc
Confidence 01113344566788888888864
No 27
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=78.03 E-value=49 Score=29.61 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=67.2
Q ss_pred HHHHHHHHHHH--------HhhCCCcccEEEeccCCCC--ChhhhHHhHHHHHHHHHHc-CCccEEEec---CCcHHHHH
Q 025396 34 ERVTRSIDESL--------ARLQLDYVDILQCHDIEFG--SLDQIVNETIPALQKQKEA-GKIRFIGIT---GLPLEIFT 99 (253)
Q Consensus 34 ~~i~~~l~~sL--------~~L~~d~iDl~~lH~~~~~--~~~~~~~~~~~aL~~l~~~-G~i~~iGvs---n~~~~~~~ 99 (253)
+.+...++.-. ++...=.+|++.||....+ ..+....+..+..++..+. +.=--|+=| ..+++.++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLe 207 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLE 207 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHH
Confidence 55666666644 2222236789999986421 1223344566666665443 332233323 35899999
Q ss_pred HHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccc
Q 025396 100 YVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGL 150 (253)
Q Consensus 100 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~ 150 (253)
++++.++.. .++.+..+... +..++.+.|+++|..|++++|..-|.
T Consensus 208 aaLe~~~G~--kpLL~SAt~e~---Ny~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 208 KAAEVAEGE--RCLLASANLDL---DYEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHhCCC--CcEEEecCchh---hHHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 999987532 23332222211 45689999999999999999876554
No 28
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=74.66 E-value=32 Score=29.67 Aligned_cols=156 Identities=16% Similarity=0.105 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhhCCCcccEEEeccCCCC-ChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcc
Q 025396 33 AERVTRSIDESLARLQLDYVDILQCHDIEFG-SLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVD 111 (253)
Q Consensus 33 ~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~-~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~ 111 (253)
.+.+++.|.+-+++.|+|++=++.+-+-+.. ........++++|++..+++.-. .+++.+-...... - .+.
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~-~-g~~ 202 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALE-A-GVP 202 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHH-T-TEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHH-C-CCC
Confidence 4677888999999999885544444433220 11112346899999988876632 2344443333321 1 344
Q ss_pred eEEecCCCCCCcccHhhHHHHHHhcCCeEEe---cccccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHH
Q 025396 112 VILSYCHYSINDSTLEDLLPYLKSKGVGVIS---ASPLAMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGKNISKIA 188 (253)
Q Consensus 112 ~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~---~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~a 188 (253)
|+. ..++..-. .+.+.+.|+++|+.+.+ -++++.++ .-.+-.+.++|.+.|....+-.
T Consensus 203 fvN--~tP~~~a~-~P~l~ela~~~gvpi~GdD~KT~lAApl----------------vlDLirl~~la~r~g~~Gv~~~ 263 (295)
T PF07994_consen 203 FVN--GTPSNIAD-DPALVELAEEKGVPIAGDDGKTPLAAPL----------------VLDLIRLAKLALRRGMGGVQEW 263 (295)
T ss_dssp EEE---SSSTTTT-SHHHHHHHHHHTEEEEESSBS-HHHHHH----------------HHHHHHHHHHHHHTTS-EEHHH
T ss_pred eEe--ccCccccC-CHHHHHHHHHcCCCeecchHhhhhhhHH----------------HHHHHHHHHHHHHcCCCChhHH
Confidence 432 22222211 14889999999999884 23333332 2234457899999999888889
Q ss_pred HHhhhcCCCcceEeeCCCCHHHHHHHHHHH
Q 025396 189 MQYSLSNKDISSVLVGMNSVKQVQENVTAA 218 (253)
Q Consensus 189 l~~~l~~~~v~~vl~g~~~~~~l~en~~a~ 218 (253)
++|.+-.|.+ -.|......+.+....+
T Consensus 264 ls~ffK~P~~---~~g~~~~~~l~~q~~~L 290 (295)
T PF07994_consen 264 LSFFFKSPMV---PPGPPQEHDLFEQYEML 290 (295)
T ss_dssp HHHHBSS-T-----TTSTT--HHHHHHHHH
T ss_pred HHHHhcCCCc---cCCCCCCCcHHHHHHHH
Confidence 9999999963 56777777775555544
No 29
>PRK13753 dihydropteroate synthase; Provisional
Probab=74.20 E-value=55 Score=27.99 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEecc-CCCC--ChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCC
Q 025396 31 FSAERVTRSIDESLARLQLDYVDILQCHD-IEFG--SLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPP 107 (253)
Q Consensus 31 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~-~~~~--~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~ 107 (253)
.+.+.+.+..++.+ .-|.|-||+=---. |... +.++-...+...++.+++.+. -|.|-+++++.++++++.
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~a--- 95 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKR--- 95 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHc---
Confidence 56676666666654 45677777654322 4221 111223445567777777653 489999999999999986
Q ss_pred CCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccccc
Q 025396 108 GAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLA 147 (253)
Q Consensus 108 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 147 (253)
..+++...... .+ +++.+.+.++++.++.+...+
T Consensus 96 -GadiINDVsg~--~d---~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 96 -GVGYLNDIQGF--PD---PALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred -CCCEEEeCCCC--Cc---hHHHHHHHHcCCCEEEEecCC
Confidence 34554322222 12 477888999999998766543
No 30
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=73.84 E-value=53 Score=27.63 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEE-eccCCCC--ChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCC
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQ-CHDIEFG--SLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMP 106 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~-lH~~~~~--~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~ 106 (253)
..+++.+.+..++.+ .-|.++||+-. --+|+.. +.+.-...+...++.+++.-.+ -+.+-+++++.++++++.
T Consensus 19 ~~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~-- 94 (257)
T TIGR01496 19 FLSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEA-- 94 (257)
T ss_pred CCCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHc--
Confidence 356777777776665 56899999831 1223221 1111122355556666655222 488889999999999987
Q ss_pred CCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecc
Q 025396 107 PGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 107 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 144 (253)
..+.+. -++ ... .+++++.++++|..++.+.
T Consensus 95 --G~~iIN-sis--~~~--~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 95 --GADIIN-DVS--GGQ--DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred --CCCEEE-ECC--CCC--CchhHHHHHHcCCcEEEEe
Confidence 234332 222 221 2478999999999999854
No 31
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=72.58 E-value=56 Score=27.36 Aligned_cols=102 Identities=20% Similarity=0.150 Sum_probs=65.4
Q ss_pred HHHHHHcCCccEEEe-cCCcHHHHHHHHHhCCCCCcceEEecCCCCCCccc-HhhHHHHHHhcCCeEEecccccccccCC
Q 025396 76 LQKQKEAGKIRFIGI-TGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDST-LEDLLPYLKSKGVGVISASPLAMGLLTD 153 (253)
Q Consensus 76 L~~l~~~G~i~~iGv-sn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~~~~pl~~G~l~~ 153 (253)
|.+..++|+. .+|+ ++.....+.+++... .+|++.+-......+.. ...++..|+..|+..+..-|-..
T Consensus 3 lk~~l~~g~~-~~G~~~~~~sp~~~e~~a~~---G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~----- 73 (249)
T TIGR03239 3 FRQDLLARET-LIGCWSALGNPITTEVLGLA---GFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE----- 73 (249)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhc---CCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC-----
Confidence 3344555764 4554 333334555555554 58888877777665533 34688888899998888765542
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHH
Q 025396 154 NGPPEWHPASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAA 218 (253)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~ 218 (253)
...++.+|..+..-.++|-.+++++.++.+++.
T Consensus 74 --------------------------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 74 --------------------------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred --------------------------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHc
Confidence 123566677775555778888888888877665
No 32
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=72.33 E-value=59 Score=27.46 Aligned_cols=136 Identities=13% Similarity=0.095 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcc
Q 025396 32 SAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVD 111 (253)
Q Consensus 32 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~ 111 (253)
+.+.+.+...+.. .-|.++||+-.=-.+ .+. .+.....++.+.+.-. .-+.+-+++++.++++++... ..+
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~~~~--~eE---~~r~~~~v~~l~~~~~-~plsIDT~~~~v~eaaL~~~~--G~~ 93 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAGTAV--EEE---PETMEWLVETVQEVVD-VPLCIDSPNPAAIEAGLKVAK--GPP 93 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCc--hhH---HHHHHHHHHHHHHhCC-CCEEEeCCCHHHHHHHHHhCC--CCC
Confidence 4455555554443 668999998653211 111 2334444444444322 247888999999999999753 122
Q ss_pred eEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHH
Q 025396 112 VILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGKNISKIA 188 (253)
Q Consensus 112 ~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~a 188 (253)
+.|-++ ......+++++.++++|..++...--..|. +...+.....++.+.+.+.++|+++.++.
T Consensus 94 -iINsIs--~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~---------P~t~~~~~~~l~~~v~~a~~~GI~~~~Ii 158 (261)
T PRK07535 94 -LINSVS--AEGEKLEVVLPLVKKYNAPVVALTMDDTGI---------PKDAEDRLAVAKELVEKADEYGIPPEDIY 158 (261)
T ss_pred -EEEeCC--CCCccCHHHHHHHHHhCCCEEEEecCCCCC---------CCCHHHHHHHHHHHHHHHHHcCCCHhHEE
Confidence 232233 222112478999999999998754322331 11123344555666777778888766544
No 33
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=71.76 E-value=20 Score=30.91 Aligned_cols=122 Identities=13% Similarity=0.141 Sum_probs=71.0
Q ss_pred HHHHHHH--HHcCCccEEEecCCcHHHHHHHHHhCCCCCcce-E--EecCCCCCCcccHhhHHHHHHhcCCeEEeccccc
Q 025396 73 IPALQKQ--KEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDV-I--LSYCHYSINDSTLEDLLPYLKSKGVGVISASPLA 147 (253)
Q Consensus 73 ~~aL~~l--~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~-~--~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 147 (253)
.+.++.+ ....++..+.=++++.+.+.++.+.+....... + ++-+++.-..| -+.+.++|++.++-++.
T Consensus 144 ~~e~~~l~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~R-Q~a~~~La~~vD~miVV----- 217 (298)
T PRK01045 144 PEDVAKLEVKDPDKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNR-QEAVKELAPQADLVIVV----- 217 (298)
T ss_pred HHHHhhcccCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHH-HHHHHHHHhhCCEEEEE-----
Confidence 3344444 223555555555677787777766443211111 1 11122111112 24688889988877775
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC------CHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHH
Q 025396 148 MGLLTDNGPPEWHPASPELKSACKAAAARCKEKGK------NISKIAMQYSLSNKDISSVLVGMNSVKQVQENVT 216 (253)
Q Consensus 148 ~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~ 216 (253)
||.-.++. ..|.++|++++. +..++-..|+.... ...+..|+|+|+-+-+.+-
T Consensus 218 Gg~~SsNT---------------~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 218 GSKNSSNS---------------NRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred CCCCCccH---------------HHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHHH
Confidence 33322211 246788888774 58899999996654 4478999999998755443
No 34
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=71.50 E-value=32 Score=26.18 Aligned_cols=120 Identities=16% Similarity=0.131 Sum_probs=56.6
Q ss_pred CccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeE-Eeccccc-ccccCCCCCCCCCC
Q 025396 84 KIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGV-ISASPLA-MGLLTDNGPPEWHP 161 (253)
Q Consensus 84 ~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v-~~~~pl~-~G~l~~~~~~~~~~ 161 (253)
+..-+.|...+.+.+..+.... .+|++.....-.....-....+..|.++|+.+ +.|+|+- ..
T Consensus 24 ~~divav~p~~~~~~~~a~~~~---~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l~~~------------ 88 (150)
T PF01876_consen 24 KYDIVAVRPGSEKAFRAACSDP---RVDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLLRSD------------ 88 (150)
T ss_dssp --SEEEEE-S-HHHHHHHHHTT-----SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHHHS-------------
T ss_pred CceEEEEEcCCHHHHHHHHhcC---CCCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhhccC------------
Confidence 3444555555566677776664 46666532211222211136888999999999 6888876 20
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 025396 162 ASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELALFGKDQEALTE 233 (253)
Q Consensus 162 ~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~ 233 (253)
...-... + +-.+-.++++...+.| +-.|++++.+++.=.....-+.++.++.++.++
T Consensus 89 -~~~r~~~---~---------~~~~~l~~~~~~~~ii--iSSgA~~~~elr~P~dv~~l~~~lGl~~~~a~~ 145 (150)
T PF01876_consen 89 -GSNRRNF---I---------SNARRLIRLTKKKNII--ISSGASSPLELRSPRDVINLLALLGLSEEEAKK 145 (150)
T ss_dssp -HHHHHHH---H---------HHHHHHHHHHHH--EE--EE---SSGGG---HHHHHHHHHHTT--HHHHHH
T ss_pred -cHHHHHH---H---------HHHHHHHHHhCCCCEE--EEcCCCChhhCcCHHHHHHHHHHhCCCHHHHHH
Confidence 0011111 1 2235567777777777 678999888887555544333345677766543
No 35
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=71.36 E-value=17 Score=31.07 Aligned_cols=123 Identities=12% Similarity=0.138 Sum_probs=73.4
Q ss_pred HHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCC--c-ceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccc
Q 025396 72 TIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGA--V-DVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAM 148 (253)
Q Consensus 72 ~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~--~-~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 148 (253)
..+.++.+....++..+-=++++.+.+.++.+.+.... . -.+.+-+.+.-..|+ +.+.+++++-++-++. |
T Consensus 143 ~~~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~vD~miVV-----G 216 (280)
T TIGR00216 143 TLEDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQ-DAVKELAPEVDLMIVI-----G 216 (280)
T ss_pred CHHHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHH-HHHHHHHhhCCEEEEE-----C
Confidence 33445555445555555555667777777766432101 0 111222222222222 4688889988877765 2
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC------CHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHH
Q 025396 149 GLLTDNGPPEWHPASPELKSACKAAAARCKEKGK------NISKIAMQYSLSNKDISSVLVGMNSVKQVQENVT 216 (253)
Q Consensus 149 G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~ 216 (253)
|.-.++ . ..|.++|++++. +..++-..|.-.... ..+..|+|+|+.+-+.+-
T Consensus 217 g~nSsN------------T---~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGASTP~~li~eVi 274 (280)
T TIGR00216 217 GKNSSN------------T---TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGASTPDWIIEEVI 274 (280)
T ss_pred CCCCch------------H---HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCCCHHHHHHHH
Confidence 322221 1 347888988874 688999999877654 478999999998865443
No 36
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=71.26 E-value=25 Score=28.39 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=49.8
Q ss_pred HHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecC-CcHHHHHHHHHhCCCCCcceEEecC
Q 025396 39 SIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITG-LPLEIFTYVLDRMPPGAVDVILSYC 117 (253)
Q Consensus 39 ~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn-~~~~~~~~~~~~~~~~~~~~~~~q~ 117 (253)
.+-+.|-+-|+..+.+-+ .. ...++.++.++++-.=..+|..+ .+.++++.+++. .-+|++.+
T Consensus 24 ~~~~al~~gGi~~iEiT~-~t----------~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a----GA~FivSP- 87 (196)
T PF01081_consen 24 PIAEALIEGGIRAIEITL-RT----------PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA----GAQFIVSP- 87 (196)
T ss_dssp HHHHHHHHTT--EEEEET-TS----------TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH----T-SEEEES-
T ss_pred HHHHHHHHCCCCEEEEec-CC----------ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc----CCCEEECC-
Confidence 344455566665554322 22 23444555444443336799998 499999999997 45666533
Q ss_pred CCCCCcccHhhHHHHHHhcCCeEEe
Q 025396 118 HYSINDSTLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~gi~v~~ 142 (253)
++. ++++++|+++|+.++.
T Consensus 88 --~~~----~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 88 --GFD----PEVIEYAREYGIPYIP 106 (196)
T ss_dssp --S------HHHHHHHHHHTSEEEE
T ss_pred --CCC----HHHHHHHHHcCCcccC
Confidence 222 4899999999999996
No 37
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=71.11 E-value=47 Score=28.65 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=69.1
Q ss_pred HHHHhhCCCcccEEEeccCCCC--ChhhhHHhHHHHHHHHHHcCCcc-EEEecCC---cHHHHHHHHHhCCCCCcceEEe
Q 025396 42 ESLARLQLDYVDILQCHDIEFG--SLDQIVNETIPALQKQKEAGKIR-FIGITGL---PLEIFTYVLDRMPPGAVDVILS 115 (253)
Q Consensus 42 ~sL~~L~~d~iDl~~lH~~~~~--~~~~~~~~~~~aL~~l~~~G~i~-~iGvsn~---~~~~~~~~~~~~~~~~~~~~~~ 115 (253)
+..+++| .|++.+|-...+ -.+.+..++.+.|++..+.=+|- -||=|.. +++.+.++.+..... .+...
T Consensus 158 k~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGe--RclLa 232 (403)
T COG2069 158 KCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGE--RCLLA 232 (403)
T ss_pred HHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCc--eEEee
Confidence 3345565 478888887432 12356788999999988776654 5677765 889999998876532 33332
Q ss_pred cCCCCCCcccHhhHHHHHHhcCCeEEeccccccc
Q 025396 116 YCHYSINDSTLEDLLPYLKSKGVGVISASPLAMG 149 (253)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G 149 (253)
..+.++.. +.+.+.|.++|=.|++|+++.-.
T Consensus 233 SanldlDy---~~ia~AA~ky~H~VLswt~~D~N 263 (403)
T COG2069 233 SANLDLDY---ERIAEAALKYDHVVLSWTQMDVN 263 (403)
T ss_pred ccccccCH---HHHHHHHHhcCceEEEeeccChH
Confidence 34444433 68999999999999999988653
No 38
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=70.41 E-value=80 Score=28.24 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCC
Q 025396 29 FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPG 108 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~ 108 (253)
.+++.+.+...+++..+. -+|.+.+|. .-.++.++.+++.|++ .|+.+-.-+.+...+-.-.
T Consensus 136 ~~~t~d~~~~~v~~qa~~----GVdfmTIHa----------GV~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~~-- 197 (432)
T COG0422 136 EDLTEDDFFDTVEKQAEQ----GVDFMTIHA----------GVLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHNH-- 197 (432)
T ss_pred hhCCHHHHHHHHHHHHHh----CCcEEEeeh----------hhhHHHHHHHHhcCce--eeeeccchHHHHHHHHHcC--
Confidence 457888888888888775 388899995 4457788888888875 5666665554443332211
Q ss_pred CcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccccccccc
Q 025396 109 AVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLL 151 (253)
Q Consensus 109 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l 151 (253)
. -|.+..+..++++.|+++++.+.---.+..|-+
T Consensus 198 ~---------ENply~~fd~lleI~k~yDvtlSLGDglRPG~i 231 (432)
T COG0422 198 K---------ENPLYEHFDELLEIFKEYDVTLSLGDGLRPGCI 231 (432)
T ss_pred C---------cCchhhhHHHHHHHHHHhCeeeeccCCCCCCcc
Confidence 1 122333345899999999998874444444433
No 39
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=70.25 E-value=79 Score=29.72 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCC
Q 025396 29 FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPG 108 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~ 108 (253)
.+++.+.+.+.|++..+. -+|.+.||.- -.++.+..+. + |..||-+-.-+.+...+-...
T Consensus 290 ~~lt~e~~~d~ieeQAeq----GVDf~TIHaG----------v~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h~-- 349 (607)
T PRK09284 290 EDLTWEIFRDTLIEQAEQ----GVDYFTIHAG----------VLLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAHH-- 349 (607)
T ss_pred hhCCHHHHHHHHHHHHHh----CCCEEEEChh----------hHHHHHHHHh--C--cccCcccCCHHHHHHHHHHcC--
Confidence 457888888888888775 3888999963 2333344343 2 777888876666555544321
Q ss_pred CcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccccccccc
Q 025396 109 AVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLL 151 (253)
Q Consensus 109 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l 151 (253)
.- |.+....+++++.|+++++.+.---.|.-|-+
T Consensus 350 kE---------NplYe~FD~ileI~k~YDVtlSLGDGLRPG~i 383 (607)
T PRK09284 350 KE---------NFLYTHFEEICEIMAAYDVSFSLGDGLRPGSI 383 (607)
T ss_pred Cc---------CcHHHHHHHHHHHHHHhCeeeeccCCcCCCcc
Confidence 11 22333445899999999999874333433433
No 40
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.75 E-value=22 Score=28.83 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecC-CcHHHHHHHHHhCCCCCc
Q 025396 32 SAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITG-LPLEIFTYVLDRMPPGAV 110 (253)
Q Consensus 32 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn-~~~~~~~~~~~~~~~~~~ 110 (253)
+++...+ +-+.|-+-|...+.+-+ - ..+..+.+++++++..=-.||..+ .+.++++++++. .-
T Consensus 14 ~~~~a~~-ia~al~~gGi~~iEit~-~----------tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a----GA 77 (201)
T PRK06015 14 DVEHAVP-LARALAAGGLPAIEITL-R----------TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA----GS 77 (201)
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEeC-C----------CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc----CC
Confidence 4444443 34455566666555433 1 234556666666654446799998 499999999987 45
Q ss_pred ceEEecCCCCCCcccHhhHHHHHHhcCCeEEe
Q 025396 111 DVILSYCHYSINDSTLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 111 ~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~ 142 (253)
+|++.+ ++. ++++++|+++|+.++.
T Consensus 78 ~FivSP---~~~----~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 78 RFIVSP---GTT----QELLAAANDSDVPLLP 102 (201)
T ss_pred CEEECC---CCC----HHHHHHHHHcCCCEeC
Confidence 666432 222 4899999999999985
No 41
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=68.95 E-value=2.2 Score=37.61 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=37.0
Q ss_pred HcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeE
Q 025396 81 EAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGV 140 (253)
Q Consensus 81 ~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v 140 (253)
=-|+|||+||--++.+.+.++.+.-. .-+....|... ++++..+.+++.|++.||.-
T Consensus 262 CVGriRYlGVlLYDaDrv~eaAs~~~--e~dly~~Q~~i-fLDP~DP~Vi~~A~k~Gip~ 318 (513)
T COG1140 262 CVGRIRYLGVLLYDADRVEEAASTEN--EKDLYERQLDV-FLDPHDPAVIEQARKDGIPD 318 (513)
T ss_pred hhcceeeeeeeeecHHHHHHhhcCcc--HHHHHHHHHhh-hcCCCCHHHHHHHHHcCCcH
Confidence 35999999999999999998877543 12222233333 23333356777777777653
No 42
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=68.46 E-value=26 Score=28.48 Aligned_cols=88 Identities=15% Similarity=0.223 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecC-CcHHHHHHHHHhCCCCCc
Q 025396 32 SAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITG-LPLEIFTYVLDRMPPGAV 110 (253)
Q Consensus 32 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn-~~~~~~~~~~~~~~~~~~ 110 (253)
+++.. ..+-+.|-+-|...+-+-+ +. ...++.+++++++..=-.+|..+ .+.++++.+++. .-
T Consensus 18 ~~e~a-~~~~~al~~~Gi~~iEit~-~t----------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a----GA 81 (204)
T TIGR01182 18 DVDDA-LPLAKALIEGGLRVLEVTL-RT----------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA----GA 81 (204)
T ss_pred CHHHH-HHHHHHHHHcCCCEEEEeC-CC----------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc----CC
Confidence 34433 3445566677776665433 32 34556666666654446799998 499999999987 45
Q ss_pred ceEEecCCCCCCcccHhhHHHHHHhcCCeEEe
Q 025396 111 DVILSYCHYSINDSTLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 111 ~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~ 142 (253)
+|++. +++. ++++++|+++|+.++.
T Consensus 82 ~Fivs---P~~~----~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 82 QFIVS---PGLT----PELAKHAQDHGIPIIP 106 (204)
T ss_pred CEEEC---CCCC----HHHHHHHHHcCCcEEC
Confidence 66643 2222 4899999999998886
No 43
>PLN02444 HMP-P synthase
Probab=68.24 E-value=82 Score=29.69 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCC
Q 025396 29 FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPG 108 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~ 108 (253)
.+++.+.+.+.|++..+. -+|.+.||.- -..+.++.++ + |..||-+-.-+.+...+-...
T Consensus 295 ~~lt~d~~~d~ieeQaeq----GVDfmTIH~G----------v~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~-- 354 (642)
T PLN02444 295 ENLTWEVFRETLIEQAEQ----GVDYFTIHAG----------VLLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYH-- 354 (642)
T ss_pred hhCCHHHHHHHHHHHHHh----CCCEEEEChh----------hHHHHHHHHh--C--cccCceeCCcHHHHHHHHHcC--
Confidence 457888888888888775 3888999963 2333444443 3 677887776555554444321
Q ss_pred CcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccccccccc
Q 025396 109 AVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLL 151 (253)
Q Consensus 109 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l 151 (253)
.- |.+..+..++++.|+++++.+.---.|.-|-+
T Consensus 355 kE---------NPlYe~FD~ileI~k~YDVtlSLGDGLRPG~i 388 (642)
T PLN02444 355 KE---------NFAYEHWDDILDICNQYDIALSIGDGLRPGSI 388 (642)
T ss_pred Cc---------CchHHHHHHHHHHHHHhCeeeeccCCcCCCcc
Confidence 11 22333445899999999999874333433333
No 44
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=67.14 E-value=33 Score=28.90 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHhhC--------------------------CCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCc
Q 025396 32 SAERVTRSIDESLARLQ--------------------------LDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKI 85 (253)
Q Consensus 32 ~~~~i~~~l~~sL~~L~--------------------------~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i 85 (253)
++.. ++.++++|+++| ....|+++|..|...-+...-.+.++-|.+++++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 3444 788999999888 567899999999644222334578999999999987
Q ss_pred cEEEecCCcHHHHHHHHH
Q 025396 86 RFIGITGLPLEIFTYVLD 103 (253)
Q Consensus 86 ~~iGvsn~~~~~~~~~~~ 103 (253)
.|=+.+|+...+.+..+
T Consensus 191 -tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 191 -TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred -EEEEEeCCcHHhHhhCC
Confidence 77888898887776655
No 45
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=65.16 E-value=78 Score=26.20 Aligned_cols=107 Identities=13% Similarity=0.117 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcC-CccEEEecCCcHHHHHHHHHhCCCC
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAG-KIRFIGITGLPLEIFTYVLDRMPPG 108 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G-~i~~iGvsn~~~~~~~~~~~~~~~~ 108 (253)
.++.+...+-++. |..+|++++.+-.--.+... -.....++.++.+.+.+ .++...++....+.++.+.+.
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~---p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~---- 86 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAV---PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA---- 86 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCcccc---ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC----
Confidence 4556655555554 77889888887765544211 11356788888999888 677767776656666666665
Q ss_pred CcceEEecCCCC---------CC----cccHhhHHHHHHhcCCeEEecc
Q 025396 109 AVDVILSYCHYS---------IN----DSTLEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 109 ~~~~~~~q~~~~---------~~----~~~~~~~~~~~~~~gi~v~~~~ 144 (253)
.++.+.+.+..+ .. .....+.++++++.|+.+...-
T Consensus 87 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 87 GVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 233333222222 00 0112367889999998876544
No 46
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=64.92 E-value=34 Score=29.26 Aligned_cols=119 Identities=12% Similarity=0.135 Sum_probs=70.0
Q ss_pred HHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcce-EEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccccCCC
Q 025396 76 LQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDV-ILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLLTDN 154 (253)
Q Consensus 76 L~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~-~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l~~~ 154 (253)
++.+.-..++..+-=++++.+.+.++.+.+......+ +.+-+++.-..|+ +...+++++.++-++. ||.-.++
T Consensus 150 ~~~l~~~~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ-~a~~~La~~vD~miVV-----Gg~~SsN 223 (281)
T PRK12360 150 VENIPFLDKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQ-ESAKELSKEVDVMIVI-----GGKHSSN 223 (281)
T ss_pred HhhCccccCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHH-HHHHHHHHhCCEEEEe-----cCCCCcc
Confidence 3333333444444445567777777766442211111 1222333222222 4688889888887775 2322221
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhCC------CHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHH
Q 025396 155 GPPEWHPASPELKSACKAAAARCKEKGK------NISKIAMQYSLSNKDISSVLVGMNSVKQVQENVT 216 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~ 216 (253)
. ..|.++|.+.+. ++.++-..|+..... ..+..|+|+|+.+-+.+-
T Consensus 224 T---------------~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~-VGitaGASTP~~li~eV~ 275 (281)
T PRK12360 224 T---------------QKLVKICEKNCPNTFHIETADELDLEMLKDYKI-IGITAGASTPDWIIEEVI 275 (281)
T ss_pred H---------------HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEccCCCCHHHHHHHH
Confidence 1 246788888775 588888899987653 478999999998765543
No 47
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=64.51 E-value=38 Score=28.69 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEecc-CCC-C--ChhhhHHhHHHHHHHHHHcCCccEEEecCCc--------H-H
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQCHD-IEF-G--SLDQIVNETIPALQKQKEAGKIRFIGITGLP--------L-E 96 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~-~~~-~--~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~--------~-~ 96 (253)
+.++..+...+... ..+|++ +++.|-+ +.. . ........+.+-++.+++..---.||++.+. . +
T Consensus 69 ~~n~~~l~~~L~~~-~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~ 145 (272)
T TIGR00676 69 GATREEIREILREY-RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEE 145 (272)
T ss_pred CCCHHHHHHHHHHH-HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHH
Confidence 45677777777644 667654 3343433 210 0 1112223455444555544223578887641 2 3
Q ss_pred HHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeE
Q 025396 97 IFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGV 140 (253)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v 140 (253)
.+..+.+..+- .-++.+.|.-|+...- .++++.|++.|+.+
T Consensus 146 ~~~~L~~K~~a-GA~f~iTQ~~fd~~~~--~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 146 DIENLKRKVDA-GADYAITQLFFDNDDY--YRFVDRCRAAGIDV 186 (272)
T ss_pred HHHHHHHHHHc-CCCeEeeccccCHHHH--HHHHHHHHHcCCCC
Confidence 45556555443 4578888988866432 47888999998765
No 48
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=64.35 E-value=43 Score=33.60 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHHhhC--------------------------CCcccEEEeccCCCCChhhhHHhHHHHHHHHHHc
Q 025396 29 FDFSAERVTRSIDESLARLQ--------------------------LDYVDILQCHDIEFGSLDQIVNETIPALQKQKEA 82 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~--------------------------~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~ 82 (253)
.+..+..+.+.++.+|+.++ +....+++|..|..+-+.......|+...++++.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 44566778888888888777 4568899999986543223356799999999999
Q ss_pred CCccEEEecCCcHHHHHHHHHhC
Q 025396 83 GKIRFIGITGLPLEIFTYVLDRM 105 (253)
Q Consensus 83 G~i~~iGvsn~~~~~~~~~~~~~ 105 (253)
|+ ++=+.+|+.++.+.+-...
T Consensus 748 g~--aiiLTSHsMeE~EaLCtR~ 768 (885)
T KOG0059|consen 748 GK--AIILTSHSMEEAEALCTRT 768 (885)
T ss_pred CC--EEEEEcCCHHHHHHHhhhh
Confidence 99 9999999999999887764
No 49
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=64.17 E-value=90 Score=26.49 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=66.0
Q ss_pred HHHHHHcCCccEEEe-cCCcHHHHHHHHHhCCCCCcceEEecCCCCCCccc-HhhHHHHHHhcCCeEEecccccccccCC
Q 025396 76 LQKQKEAGKIRFIGI-TGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDST-LEDLLPYLKSKGVGVISASPLAMGLLTD 153 (253)
Q Consensus 76 L~~l~~~G~i~~iGv-sn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~~~~pl~~G~l~~ 153 (253)
|.+..++|+.- +|+ .+.....+.+++... .+|++.+-......+.. ...++..++..|+..++.-|-..
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~---GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~----- 79 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATS---GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS----- 79 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHc---CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC-----
Confidence 45555667753 444 333334555555554 58888877776665543 33688888899998887666432
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHH
Q 025396 154 NGPPEWHPASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAA 218 (253)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~ 218 (253)
...++.+|..|.--.++|-..++++.++.+++.
T Consensus 80 --------------------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 80 --------------------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred --------------------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 134566777775555777888888888877776
No 50
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=63.42 E-value=38 Score=25.66 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=41.4
Q ss_pred CCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhC--CCcccEEEeccCCCCChhhhHHhHHHHHHHHH
Q 025396 12 PRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQ--LDYVDILQCHDIEFGSLDQIVNETIPALQKQK 80 (253)
Q Consensus 12 ~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~ 80 (253)
.|=.+.|+-|++. ...++.|++.+.++++... ....|++++..... .....+....|..+.
T Consensus 46 ~RlG~sVSKKvg~-----AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~---~~~f~~L~~~l~~~~ 108 (138)
T PRK00730 46 CKVGITVSKKFGK-----AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNS---QPDFLKLLQDFLQQI 108 (138)
T ss_pred ceEEEEEeccccc-----chhHHHHHHHHHHHHHHhhcccCCceEEEEecccc---CCCHHHHHHHHHHHH
Confidence 3555777778775 4678899999999998764 34689999998743 133445555554443
No 51
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=62.64 E-value=15 Score=31.45 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=66.2
Q ss_pred HHHHHHHc--CCccEEEecCCcHHHHHHHHHhCCCCCcceE---EecCCCCCCcccHhhHHHHHHhcCCeEEeccccccc
Q 025396 75 ALQKQKEA--GKIRFIGITGLPLEIFTYVLDRMPPGAVDVI---LSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMG 149 (253)
Q Consensus 75 aL~~l~~~--G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~---~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G 149 (253)
.++.+... +++..+.=++++.+.+.++.+.+....+... .+-+.+.-..| -+++.++|++-++-++. ||
T Consensus 145 ~~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~R-Q~a~~~La~~vD~miVI-----Gg 218 (281)
T PF02401_consen 145 DVEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNR-QEAARELAKEVDAMIVI-----GG 218 (281)
T ss_dssp HHHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHH-HHHHHHHHCCSSEEEEE-----S-
T ss_pred hhcccCCCCCCeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHH-HHHHHHHHhhCCEEEEe-----cC
Confidence 44444433 4777777778888887777664321111211 22222211112 24688888888876665 22
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC------CHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHH
Q 025396 150 LLTDNGPPEWHPASPELKSACKAAAARCKEKGK------NISKIAMQYSLSNKDISSVLVGMNSVKQVQENVT 216 (253)
Q Consensus 150 ~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~ 216 (253)
.-. .+. .+|.++|++++. ++.++...|+-... ...+..|+|+|+.+-+.+-
T Consensus 219 ~~S------------sNT---~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGASTP~~ii~eVi 275 (281)
T PF02401_consen 219 KNS------------SNT---RKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGASTPDWIIEEVI 275 (281)
T ss_dssp TT-------------HHH---HHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS-HHHHHHHH
T ss_pred CCC------------ccH---HHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCCCHHHHHHHH
Confidence 211 111 347889999875 68899999988776 4478999999998876554
No 52
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.20 E-value=23 Score=31.13 Aligned_cols=70 Identities=11% Similarity=0.177 Sum_probs=48.4
Q ss_pred HhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEE
Q 025396 70 NETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVI 141 (253)
Q Consensus 70 ~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~ 141 (253)
..++..+|+|.+.-.|..+=||.-++.+.+.++-....++. +...-+..+.-.+.+++++.|+++|+.++
T Consensus 58 ~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~--VL~EKPla~n~~e~~~iveaA~~rgv~~m 127 (351)
T KOG2741|consen 58 PKAYGSYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKH--VLCEKPLAMNVAEAEEIVEAAEARGVFFM 127 (351)
T ss_pred CccccCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCc--EEecccccCCHHHHHHHHHHHHHcCcEEE
Confidence 34566688999999888888887777666655554433344 33345554555556789999999998887
No 53
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=61.06 E-value=72 Score=27.31 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCC-CCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCC
Q 025396 31 FSAERVTRSIDESLARLQLDYVDILQCHDIE-FGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGA 109 (253)
Q Consensus 31 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~-~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~ 109 (253)
++.+ -+..+-+.|.++|+++|.+-..++|. .+. +.+.++.+..+.+...++..+++ .+...++.+.+.. ...
T Consensus 23 ~s~e-~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~----~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~ 95 (287)
T PRK05692 23 IPTA-DKIALIDRLSAAGLSYIEVASFVSPKWVPQ----MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADE 95 (287)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEeCCCcCcccccc----cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCE
Confidence 4454 34556667999999999987555553 122 23446666666555456666554 4778888877752 112
Q ss_pred cceEEecCC-------CCCCcc----cHhhHHHHHHhcCCeEEe
Q 025396 110 VDVILSYCH-------YSINDS----TLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 110 ~~~~~~q~~-------~~~~~~----~~~~~~~~~~~~gi~v~~ 142 (253)
+.+. ...+ .+.... ...+.+++++++|+.+.+
T Consensus 96 v~i~-~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 96 VAVF-ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 2222 1111 111111 123688999999998863
No 54
>PF14502 HTH_41: Helix-turn-helix domain
Probab=60.85 E-value=7.2 Score=23.73 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCC--HHHHHHHhhhcCCCc
Q 025396 171 KAAAARCKEKGKN--ISKIAMQYSLSNKDI 198 (253)
Q Consensus 171 ~~l~~la~~~~~s--~~q~al~~~l~~~~v 198 (253)
.++.++++++++| ..|-||+++-..+.|
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI 36 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAI 36 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcE
Confidence 4578899999987 889999999999887
No 55
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=59.25 E-value=33 Score=24.49 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=38.9
Q ss_pred HHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEe
Q 025396 76 LQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 76 L~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~ 142 (253)
++++.+...+..+-+++-+..+...+.....-+. .++..-+......+..++++.|+++|..++.
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSHAEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 5667776678888888764444443333322222 3444555555545556788888888877653
No 56
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=58.66 E-value=1.1e+02 Score=25.61 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=62.5
Q ss_pred HHHHHHcCCccEEEecC--CcHHHHHHHHHhCCCCCcceEEecCCCCCCccc-HhhHHHHHHhcCCeEEecccccccccC
Q 025396 76 LQKQKEAGKIRFIGITG--LPLEIFTYVLDRMPPGAVDVILSYCHYSINDST-LEDLLPYLKSKGVGVISASPLAMGLLT 152 (253)
Q Consensus 76 L~~l~~~G~i~~iGvsn--~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~~~~pl~~G~l~ 152 (253)
|.+..++|+. -+|+-. -++..++.+ ... .+|++++-+..+..+.+ ...++..|+.+|+.++..-|-..
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~-~~~---g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~---- 73 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEIC-AGA---GFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD---- 73 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHH-Hhc---CCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC----
Confidence 4455566875 355433 344444444 443 57888877776665432 23567777777887777654321
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHH
Q 025396 153 DNGPPEWHPASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAAS 219 (253)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~ 219 (253)
..-++.++..+.--.++|-..+++++++.+++..
T Consensus 74 ---------------------------------~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 74 ---------------------------------PVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATR 107 (249)
T ss_pred ---------------------------------HHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 1135667777754457888888888888887763
No 57
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=57.65 E-value=55 Score=26.68 Aligned_cols=75 Identities=11% Similarity=-0.007 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccccccc
Q 025396 72 TIPALQKQKEAGKIR-FIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMG 149 (253)
Q Consensus 72 ~~~aL~~l~~~G~i~-~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G 149 (253)
.++.+.++.+...+. +.+=|.++.+.+..+++.. .+++++.-....=--.+..++..+|+++|+.++..+.+..+
T Consensus 133 d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~---~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 133 DLEGYAALRRRTGIPIAADESVTTVDDALEALELG---AVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC---CCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 366677777776655 4455556777777776653 45555422222111122347889999999999987765543
No 58
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=57.19 E-value=1.2e+02 Score=25.52 Aligned_cols=107 Identities=7% Similarity=-0.036 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCC
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGA 109 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~ 109 (253)
..+.+.+.+...+.++ -|.|+||+-. .|...+....+..+...+.+.. . .-|.|-+++++.++++++... .
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~---~-~piSIDT~~~~v~e~aL~~~~--G 92 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEP---T-VPLMLDSTNWEVIEAGLKCCQ--G 92 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhc---C-CcEEeeCCcHHHHHHHHhhCC--C
Confidence 3567778888777775 4999999865 2321121111222222232221 2 347888999999999998742 1
Q ss_pred cceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccc
Q 025396 110 VDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPL 146 (253)
Q Consensus 110 ~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 146 (253)
.+ +.|-+.....+.+.+++++.++++|..++.+..-
T Consensus 93 ~~-iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 93 KC-VVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred Cc-EEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 22 2323332111122357889999999999876543
No 59
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=55.70 E-value=17 Score=23.30 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCHHHHHHHhhhc
Q 025396 173 AAARCKEKGKNISKIAMQYSLS 194 (253)
Q Consensus 173 l~~la~~~~~s~~q~al~~~l~ 194 (253)
..+||+++|+++.++|..|+.-
T Consensus 16 FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 16 FVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 4789999999999999999863
No 60
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=55.39 E-value=1.2e+02 Score=25.70 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHHHhhC--------------------------CCcccEEEeccCCCCChhhhHHhHHHHHHHHHHc
Q 025396 29 FDFSAERVTRSIDESLARLQ--------------------------LDYVDILQCHDIEFGSLDQIVNETIPALQKQKEA 82 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~--------------------------~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~ 82 (253)
.++....++..++.-|++++ .-.+|++.|..|-.+=.....+-.-++..+++++
T Consensus 100 kGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~ 179 (300)
T COG4152 100 KGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179 (300)
T ss_pred cCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhc
Confidence 56788889999999999988 2345666666663321122234566778889999
Q ss_pred CCccEEEecCCcHHHHHHHHHhC
Q 025396 83 GKIRFIGITGLPLEIFTYVLDRM 105 (253)
Q Consensus 83 G~i~~iGvsn~~~~~~~~~~~~~ 105 (253)
|. .|=+|+|..++++++-+..
T Consensus 180 Ga--tIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 180 GA--TIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred CC--EEEEecchHHHHHHHhhhh
Confidence 98 7899999999999887753
No 61
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.30 E-value=56 Score=26.66 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCC---ccEEEecC-CcHHHHHHHHHhCCC
Q 025396 32 SAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGK---IRFIGITG-LPLEIFTYVLDRMPP 107 (253)
Q Consensus 32 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~---i~~iGvsn-~~~~~~~~~~~~~~~ 107 (253)
+.+... .+-+.|-.-|+.-+.+-+= .....+++++++++-. =..+|..+ .+.++++.+++.
T Consensus 23 ~~~~a~-~~~~al~~~Gi~~iEit~~-----------~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a--- 87 (213)
T PRK06552 23 SKEEAL-KISLAVIKGGIKAIEVTYT-----------NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA--- 87 (213)
T ss_pred CHHHHH-HHHHHHHHCCCCEEEEECC-----------CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc---
Confidence 344333 3444555666665554331 2345566666665421 24699998 489999999887
Q ss_pred CCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEe
Q 025396 108 GAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 108 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~ 142 (253)
.-+|++. +++. ++++++|+++|+.++.
T Consensus 88 -GA~Fivs---P~~~----~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 88 -GAQFIVS---PSFN----RETAKICNLYQIPYLP 114 (213)
T ss_pred -CCCEEEC---CCCC----HHHHHHHHHcCCCEEC
Confidence 4566652 2222 4899999999999985
No 62
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=55.24 E-value=36 Score=28.41 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=41.1
Q ss_pred CcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHh-HHHHHHHHHHcCCccEEEecC
Q 025396 14 NEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNE-TIPALQKQKEAGKIRFIGITG 92 (253)
Q Consensus 14 ~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~-~~~aL~~l~~~G~i~~iGvsn 92 (253)
.-++|+|=.+ +-+.|.++++.-.+.- .-++.+||+.. .+..+.++ -+..|..|++.=- --||.|.
T Consensus 114 kPvIlSTG~s--------tl~EI~~Av~~~~~~~---~~~l~llHC~s--~YP~~~e~~NL~~i~~L~~~f~-~~vG~SD 179 (241)
T PF03102_consen 114 KPVILSTGMS--------TLEEIERAVEVLREAG---NEDLVLLHCVS--SYPTPPEDVNLRVIPTLKERFG-VPVGYSD 179 (241)
T ss_dssp S-EEEE-TT----------HHHHHHHHHHHHHHC---T--EEEEEE-S--SSS--GGG--TTHHHHHHHHST-SEEEEEE
T ss_pred CcEEEECCCC--------CHHHHHHHHHHHHhcC---CCCEEEEecCC--CCCCChHHcChHHHHHHHHhcC-CCEEeCC
Confidence 3477776553 5677777777664443 46899999984 22233333 3666666665522 6789999
Q ss_pred CcHHHHHHHHH
Q 025396 93 LPLEIFTYVLD 103 (253)
Q Consensus 93 ~~~~~~~~~~~ 103 (253)
|+......++.
T Consensus 180 Ht~g~~~~~~A 190 (241)
T PF03102_consen 180 HTDGIEAPIAA 190 (241)
T ss_dssp -SSSSHHHHHH
T ss_pred CCCCcHHHHHH
Confidence 97654444443
No 63
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=54.48 E-value=1.3e+02 Score=25.30 Aligned_cols=105 Identities=12% Similarity=0.140 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEecc-CCCCC-----hhhhHHhHHHHHHHHHHc-CCccEEEecCCc-------
Q 025396 29 FDFSAERVTRSIDESLARLQLDYVDILQCHD-IEFGS-----LDQIVNETIPALQKQKEA-GKIRFIGITGLP------- 94 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~-~~~~~-----~~~~~~~~~~aL~~l~~~-G~i~~iGvsn~~------- 94 (253)
.+.++..++..+... ..+|++ +++.|-+ +.... .......+.+-++.+++. |..-.+|+..+.
T Consensus 68 r~~n~~~l~~~L~~~-~~~Gi~--~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~ 144 (274)
T cd00537 68 RDRNRIELQSILLGA-HALGIR--NILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAP 144 (274)
T ss_pred CCCCHHHHHHHHHHH-HHCCCC--eEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCC
Confidence 356677777777666 556754 4566633 21111 012234556666655554 355678887652
Q ss_pred --HHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCe
Q 025396 95 --LEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVG 139 (253)
Q Consensus 95 --~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~ 139 (253)
...+..+.+..+- ..++.+.|.-|+... ..++++.|++.|+.
T Consensus 145 ~~~~~~~~L~~Ki~a-GA~f~iTQ~~fd~~~--~~~~~~~~~~~gi~ 188 (274)
T cd00537 145 SLEEDIKRLKRKVDA-GADFIITQLFFDNDA--FLRFVDRCRAAGIT 188 (274)
T ss_pred CHHHHHHHHHHHHHC-CCCEEeecccccHHH--HHHHHHHHHHcCCC
Confidence 2345555555544 458888898886543 24788999999864
No 64
>PLN02880 tyrosine decarboxylase
Probab=54.44 E-value=33 Score=31.86 Aligned_cols=59 Identities=7% Similarity=-0.010 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecC
Q 025396 34 ERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITG 92 (253)
Q Consensus 34 ~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn 92 (253)
+..+-++++++.-||+..=.+..+.....++........-+++++.+++|++=.+=|++
T Consensus 188 ~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvat 246 (490)
T PLN02880 188 DQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCAT 246 (490)
T ss_pred CCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEe
Confidence 34567788888888876444555544311223344566667777777778665554443
No 65
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=52.84 E-value=52 Score=24.63 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.0
Q ss_pred HhhHHHHHHhcCCeEEecccccc
Q 025396 126 LEDLLPYLKSKGVGVISASPLAM 148 (253)
Q Consensus 126 ~~~~~~~~~~~gi~v~~~~pl~~ 148 (253)
..++++.|++.||.|++|-.+..
T Consensus 46 lge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHHCCCEEEEEEeeec
Confidence 35899999999999999988863
No 66
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=52.54 E-value=71 Score=27.97 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=47.4
Q ss_pred cEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhH-HHHHHHHHHcCCccEEEecCC
Q 025396 15 EYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNET-IPALQKQKEAGKIRFIGITGL 93 (253)
Q Consensus 15 ~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~-~~aL~~l~~~G~i~~iGvsn~ 93 (253)
.+.++|=.. +-+.+.++++...++= . .|+.+||+.. .+..+.+++ +.+|-.|.+.= -.-||+|.|
T Consensus 149 PiIlSTGma--------~~~ei~~av~~~r~~g-~--~~i~LLhC~s--~YPap~ed~NL~~i~~l~~~F-n~~vGlSDH 214 (347)
T COG2089 149 PIILSTGMA--------TIEEIEEAVAILRENG-N--PDIALLHCTS--AYPAPFEDVNLKAIPKLAEAF-NAIVGLSDH 214 (347)
T ss_pred CEEEEcccc--------cHHHHHHHHHHHHhcC-C--CCeEEEEecC--CCCCCHHHhhHHHHHHHHHHh-CCccccccC
Confidence 466666553 4677888887766554 3 3999999974 223333332 44444444443 457999999
Q ss_pred cHHHHHHHHHh
Q 025396 94 PLEIFTYVLDR 104 (253)
Q Consensus 94 ~~~~~~~~~~~ 104 (253)
+...+..+...
T Consensus 215 T~g~~a~l~Av 225 (347)
T COG2089 215 TLGILAPLAAV 225 (347)
T ss_pred ccchhHHHHHH
Confidence 88866655543
No 67
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=52.05 E-value=25 Score=24.99 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=35.0
Q ss_pred cCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccccccc
Q 025396 91 TGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMG 149 (253)
Q Consensus 91 sn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G 149 (253)
|.++...+.++++.. .+++++.-....---.+...+.++|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~~---a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAG---AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTT---SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcC---CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 456788888888864 5566543222211112234789999999999999886 543
No 68
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=51.90 E-value=81 Score=26.63 Aligned_cols=107 Identities=23% Similarity=0.244 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC---hhhhHHhHHHHHHHHHHcCCccEEEecCCc---HHHHHHHH
Q 025396 29 FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGS---LDQIVNETIPALQKQKEAGKIRFIGITGLP---LEIFTYVL 102 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~---~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~---~~~~~~~~ 102 (253)
..++.+.. ..+-+.|.+.|+++|++-+........ ......+.++.+....+ +..+..+++... .+.+..+.
T Consensus 15 ~~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred ccCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHh
Confidence 34566644 556666999999999998765532110 00111345555555543 346666666543 34444443
Q ss_pred HhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEe
Q 025396 103 DRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 103 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~ 142 (253)
+. .++.+.+....+..+ ...+.+++++++|+.|..
T Consensus 93 ~~----gv~~iri~~~~~~~~-~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 93 GS----VVDMIRVAFHKHEFD-EALPLIKAIKEKGYEVFF 127 (266)
T ss_pred cC----CcCEEEEecccccHH-HHHHHHHHHHHCCCeEEE
Confidence 32 345444333333222 224788899999987664
No 69
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=51.49 E-value=1.2e+02 Score=25.09 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHHhhC--------------------------CCcccEEEeccCCCCChhhhHHhHHHHHHHHHHc
Q 025396 29 FDFSAERVTRSIDESLARLQ--------------------------LDYVDILQCHDIEFGSLDQIVNETIPALQKQKEA 82 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~--------------------------~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~ 82 (253)
.+++...+++.+++.-++|+ +..++++.+..|..+-.-......-+.+..++.+
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 45677777788877777777 3456777777776442223345678888889999
Q ss_pred CCccEEEecCCcHHHHHHHHHh
Q 025396 83 GKIRFIGITGLPLEIFTYVLDR 104 (253)
Q Consensus 83 G~i~~iGvsn~~~~~~~~~~~~ 104 (253)
|+ .+=+|+|..++++++-+.
T Consensus 183 gr--~viFSSH~m~EvealCDr 202 (245)
T COG4555 183 GR--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred Cc--EEEEecccHHHHHHhhhe
Confidence 98 788999999988887664
No 70
>PRK13796 GTPase YqeH; Provisional
Probab=51.35 E-value=1.5e+02 Score=26.27 Aligned_cols=85 Identities=15% Similarity=0.227 Sum_probs=58.2
Q ss_pred CCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEec
Q 025396 12 PRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGIT 91 (253)
Q Consensus 12 ~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvs 91 (253)
.+.-++|.+|.--.+ .....+.+...+....+.+|....|++++-.-. ...+.++++.+.+..+.+.+--+|.+
T Consensus 96 ~kpviLViNK~DLl~--~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~----g~gI~eL~~~I~~~~~~~~v~vvG~~ 169 (365)
T PRK13796 96 NNPVLLVGNKADLLP--KSVKKNKVKNWLRQEAKELGLRPVDVVLISAQK----GHGIDELLEAIEKYREGRDVYVVGVT 169 (365)
T ss_pred CCCEEEEEEchhhCC--CccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC----CCCHHHHHHHHHHhcCCCeEEEEcCC
Confidence 345678999985422 223456677777777777887655777776542 12367788888877778899999999
Q ss_pred CCcHHHHHHHH
Q 025396 92 GLPLEIFTYVL 102 (253)
Q Consensus 92 n~~~~~~~~~~ 102 (253)
|...+.+-..+
T Consensus 170 NvGKSTLiN~L 180 (365)
T PRK13796 170 NVGKSTLINRI 180 (365)
T ss_pred CCcHHHHHHHH
Confidence 99776665443
No 71
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=51.24 E-value=89 Score=26.06 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=18.2
Q ss_pred HhhHHHHHHhcCCeEEecccccc
Q 025396 126 LEDLLPYLKSKGVGVISASPLAM 148 (253)
Q Consensus 126 ~~~~~~~~~~~gi~v~~~~pl~~ 148 (253)
..++.+.++++||.+.++.|...
T Consensus 49 ~~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 49 IKQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred HHHHHHHHHHcCCeEEEecCccc
Confidence 35688899999999998877543
No 72
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=50.94 E-value=1.4e+02 Score=24.81 Aligned_cols=50 Identities=14% Similarity=0.032 Sum_probs=29.9
Q ss_pred hHHHHHHhcCCeEEecccccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 025396 128 DLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGK 182 (253)
Q Consensus 128 ~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~ 182 (253)
..+++|+..|...+...|...|.. .......+.....++.+.++|+++|+
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~-----~~~~~~~~~~~~~l~~l~~~a~~~gv 143 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYL-----TPPNVIWGRLAENLSELCEYAENIGM 143 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 577889999998887766533321 11111123444556677777778776
No 73
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=50.92 E-value=1.2e+02 Score=23.61 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=55.3
Q ss_pred HHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCccc----HhhHHHHHHhcCCeEEecc
Q 025396 69 VNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDST----LEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~----~~~~~~~~~~~gi~v~~~~ 144 (253)
.+++++.--+--++.-|++|=|++-+-.....+++.... .+.++.+-.++.+.... .+++-+..++.|..|..-+
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~s 90 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQS 90 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeeh
Confidence 567777766667788899999999888888888776643 35555544555444322 1378889999999998655
Q ss_pred ccccc
Q 025396 145 PLAMG 149 (253)
Q Consensus 145 pl~~G 149 (253)
-.-+|
T Consensus 91 HalSg 95 (186)
T COG1751 91 HALSG 95 (186)
T ss_pred hhhhc
Confidence 44444
No 74
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=50.77 E-value=83 Score=23.51 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=43.2
Q ss_pred CCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCC----CcccEEEeccCCCCChhhhHHhHHHHHHHHHH
Q 025396 12 PRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQL----DYVDILQCHDIEFGSLDQIVNETIPALQKQKE 81 (253)
Q Consensus 12 ~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~----d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~ 81 (253)
.|=.+.|+-|+|. ...+..|++.+.++++.+.. ...|++++-.+...+ ....++.+.|..+.+
T Consensus 47 ~RvG~~VSKKvG~-----AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~--~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGN-----AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALN--APFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCc-----chHHHHHHHHHHHHHHHhchhccCCCceEEEEECccccc--CCHHHHHHHHHHHHH
Confidence 3445667777764 56789999999999987754 568999999985332 334555555555443
No 75
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=49.46 E-value=1.4e+02 Score=25.94 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCccEEEecCCcHH----HHHHHHHhCCCCCcceEEecCCC--CCCc--ccHhhHHHHHHhcCCeEE
Q 025396 74 PALQKQKEAGKIRFIGITGLPLE----IFTYVLDRMPPGAVDVILSYCHY--SIND--STLEDLLPYLKSKGVGVI 141 (253)
Q Consensus 74 ~aL~~l~~~G~i~~iGvsn~~~~----~~~~~~~~~~~~~~~~~~~q~~~--~~~~--~~~~~~~~~~~~~gi~v~ 141 (253)
+.++.|++.|+.-+||+-..++. ...++++......+. +.+|.-. ...+ ....++.+++.+.|+...
T Consensus 188 ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~-v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~py 262 (321)
T TIGR03822 188 ALIAALKTSGKTVYVALHANHARELTAEARAACARLIDAGIP-MVSQSVLLRGVNDDPETLAALMRAFVECRIKPY 262 (321)
T ss_pred HHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCE-EEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeE
Confidence 33445566675556777664332 233333322111232 2222211 1112 123477888888887643
No 76
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=48.35 E-value=88 Score=26.13 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCcc-EEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccc
Q 025396 73 IPALQKQKEAGKIR-FIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAM 148 (253)
Q Consensus 73 ~~aL~~l~~~G~i~-~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 148 (253)
++.+.++.+.-.+- +.|=+-++.+.+.++++.. .+++++.-....=--.+..++.+.|+++|+.++..+.+.+
T Consensus 169 ~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~---~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s 242 (265)
T cd03315 169 LEGRAALARATDTPIMADESAFTPHDAFRELALG---AADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIES 242 (265)
T ss_pred HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC---CCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccch
Confidence 55666666665444 3444456777777777653 4555543222211112224788899999999987665544
No 77
>TIGR00035 asp_race aspartate racemase.
Probab=48.09 E-value=1.4e+02 Score=24.38 Aligned_cols=68 Identities=16% Similarity=0.063 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCCh---------hhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHH
Q 025396 31 FSAERVTRSIDESLARLQLDYVDILQCHDIEFGSL---------DQIVNETIPALQKQKEAGKIRFIGITGLPLEIFT 99 (253)
Q Consensus 31 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~---------~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~ 99 (253)
.+-+..++-++..-.+.+.++++.+.+++|+.++. +.+...+.+.++.|.+. .+..|-++.++...+.
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~-g~d~iviaCNTah~~~ 90 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENA-GADFIIMPCNTAHKFA 90 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHc-CCCEEEECCccHHHHH
Confidence 34566666666666789999999999999975432 22334566666666654 4899999998777643
No 78
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=47.99 E-value=1.1e+02 Score=26.23 Aligned_cols=104 Identities=13% Similarity=0.325 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCC---C----hhhhHHhHHHHHHHHHHc-CCccEEEecCCc-------
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQCHDIEFG---S----LDQIVNETIPALQKQKEA-GKIRFIGITGLP------- 94 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~---~----~~~~~~~~~~aL~~l~~~-G~i~~iGvsn~~------- 94 (253)
+.++..++..+... ..+|++ +++.|-+ |.+ + .......+.+-++.+++. |.--.||+..+.
T Consensus 70 ~~~~~~l~~~L~~~-~~~Gi~--niLal~G-D~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~ 145 (281)
T TIGR00677 70 NMPIEMIDDALERA-YSNGIQ--NILALRG-DPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAE 145 (281)
T ss_pred CCCHHHHHHHHHHH-HHCCCC--EEEEECC-CCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCC
Confidence 45566666665554 667754 3444443 111 0 111223355555555554 444689999772
Q ss_pred -HH-HHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeE
Q 025396 95 -LE-IFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGV 140 (253)
Q Consensus 95 -~~-~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v 140 (253)
.+ .+..+.+..+. .-++.+.|+-|+...- .++++.|++.|+.+
T Consensus 146 ~~~~d~~~L~~Ki~a-GA~f~iTQ~~Fd~~~~--~~f~~~~~~~gi~~ 190 (281)
T TIGR00677 146 SVELDLKYLKEKVDA-GADFIITQLFYDVDNF--LKFVNDCRAIGIDC 190 (281)
T ss_pred CHHHHHHHHHHHHHc-CCCEeeccceecHHHH--HHHHHHHHHcCCCC
Confidence 22 34555554443 5678888988865432 47888899997654
No 79
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=47.49 E-value=1.5e+02 Score=25.18 Aligned_cols=158 Identities=13% Similarity=0.221 Sum_probs=76.7
Q ss_pred hhHHhHHHHHHHHHHcCCccEEEecCCcHHH--HHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecc
Q 025396 67 QIVNETIPALQKQKEAGKIRFIGITGLPLEI--FTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 67 ~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~--~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 144 (253)
....-+|+.++.|++++ |+.+=++..+.+. +..+-+.. .+.++- .. +..+..++..+...|+|++=.
T Consensus 51 ~I~~~~~~i~~~l~~~~-ik~lVIACNTASa~al~~LR~~~---~iPVvG------vi-Paik~A~~~t~~~~IgViaT~ 119 (269)
T COG0796 51 EIRERTLEIVDFLLERG-IKALVIACNTASAVALEDLREKF---DIPVVG------VI-PAIKPAVALTRNGRIGVIATP 119 (269)
T ss_pred HHHHHHHHHHHHHHHcC-CCEEEEecchHHHHHHHHHHHhC---CCCEEE------ec-cchHHHHHhccCCeEEEEecc
Confidence 33456788888888888 8888777664433 33444443 222222 11 222334445555567777522
Q ss_pred cccccccCCCCCC----CCCCCCHHHHHHHHHHHHHHHHhCC--CHHHHHHH----hhhcCCCcceEeeCCCCHHHHHHH
Q 025396 145 PLAMGLLTDNGPP----EWHPASPELKSACKAAAARCKEKGK--NISKIAMQ----YSLSNKDISSVLVGMNSVKQVQEN 214 (253)
Q Consensus 145 pl~~G~l~~~~~~----~~~~~~~~~~~~~~~l~~la~~~~~--s~~q~al~----~~l~~~~v~~vl~g~~~~~~l~en 214 (253)
|-+.+.+.. .+.+...-..-.+..+..+++..-. ..++-+++ |.... .+++++.|+++=-.+++.
T Consensus 120 ----~Tvks~~y~~~i~~~~~~~~V~~la~p~lV~lvE~g~~~~~~~~~~l~~~l~~~~~~-~~DtlVLGCTHyPll~~~ 194 (269)
T COG0796 120 ----ATVKSNAYRDLIARFAPDCEVESLACPELVPLVEEGIRGGPVALEVLKEYLPPLQEA-GPDTLVLGCTHYPLLKPE 194 (269)
T ss_pred ----chhccHHHHHHHHHhCCCCEEEEecCcchHHHHhcccccCHHHHHHHHHHhcchhcc-CCCEEEEeCcCcHHHHHH
Confidence 111111100 0000000000111234455544322 23333333 22222 377899999999999988
Q ss_pred HHHHHh--hhhcCCCHHHHHHHHHHhcc
Q 025396 215 VTAASE--LALFGKDQEALTEVEAILKP 240 (253)
Q Consensus 215 ~~a~~~--~~~~~l~~~~~~~i~~~~~~ 240 (253)
++.... ..+-.=..+..+++..++..
T Consensus 195 i~~~~~~~v~lids~~~~a~~~~~~L~~ 222 (269)
T COG0796 195 IQQVLGEHVALIDSGAETARRLARLLSP 222 (269)
T ss_pred HHHHhCCCceEeCCHHHHHHHHHHHhCh
Confidence 887622 11001112556777776654
No 80
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=47.35 E-value=89 Score=26.90 Aligned_cols=74 Identities=8% Similarity=-0.043 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccc
Q 025396 72 TIPALQKQKEAGKIR-FIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAM 148 (253)
Q Consensus 72 ~~~aL~~l~~~G~i~-~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 148 (253)
-++.+.++.+...|- +.|=+-++.+.+.++++.. ..+.++.-....---.+..++..+|+++|+.+...+-+.+
T Consensus 216 d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~---~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~ 290 (316)
T cd03319 216 DDDGLAYLRDKSPLPIMADESCFSAADAARLAGGG---AYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVES 290 (316)
T ss_pred CHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcC---CCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhh
Confidence 456666676665555 3344446777777777753 4455432222111112223788999999999987655443
No 81
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=47.24 E-value=94 Score=26.99 Aligned_cols=76 Identities=12% Similarity=0.048 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHcCCcc-EEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccccccc
Q 025396 71 ETIPALQKQKEAGKIR-FIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMG 149 (253)
Q Consensus 71 ~~~~aL~~l~~~G~i~-~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G 149 (253)
+.++.+.++.+...+. +.|=|.++...+..+++.. .+++++.-+...---.+..++...|+.+|+.++..+.+.+|
T Consensus 210 ~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~---~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 210 DDLSMLDELAKGTITPICLDESITSLDDARNLIELG---NVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcC---CCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEccc
Confidence 4567777777775554 6677778888888888753 45555422221111122247899999999999876655543
No 82
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=46.86 E-value=74 Score=30.72 Aligned_cols=121 Identities=18% Similarity=0.141 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcce-EEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccccC
Q 025396 74 PALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDV-ILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLLT 152 (253)
Q Consensus 74 ~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~-~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l~ 152 (253)
+.++.+....++..+-=++++.+.+.++.+.+...-+.+ +.+-+++.-..|+ ..+.++|++.++-++. ||.-.
T Consensus 145 ~~~~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq-~a~~~la~~~d~~~vv-----Gg~~S 218 (647)
T PRK00087 145 EEAEKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQ-EAAEKLAKKVDVMIVV-----GGKNS 218 (647)
T ss_pred HHHhhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHH-HHHHHHHhhCCEEEEE-----CCCCC
Confidence 334443334555555555667787777766432111111 1223333222222 4688888888877775 23222
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhCC------CHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHH
Q 025396 153 DNGPPEWHPASPELKSACKAAAARCKEKGK------NISKIAMQYSLSNKDISSVLVGMNSVKQVQENVT 216 (253)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~ 216 (253)
++ . ..|.++|++.|. ++.++.-.|.-.... ..+..|+|+|+.+-+.+-
T Consensus 219 sN------------t---~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~-vgitagaStP~~~i~~v~ 272 (647)
T PRK00087 219 SN------------T---TKLYEICKSNCTNTIHIENAGELPEEWFKGVKI-IGVTAGASTPDWIIEEVI 272 (647)
T ss_pred cc------------H---HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEeccCCCHHHHHHHH
Confidence 11 1 246888888774 588998899877654 478999999998754443
No 83
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=46.74 E-value=2e+02 Score=25.44 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=56.1
Q ss_pred CCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecC
Q 025396 13 RNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITG 92 (253)
Q Consensus 13 R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn 92 (253)
..-++|.+|.--.+ .....+.+...+.+.++..|....|++.+-.-. ...+.+.++.|.+..+.+.|-.+|.+|
T Consensus 91 ~piilV~NK~DLl~--k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~----g~gv~eL~~~l~~~~~~~~v~~vG~~n 164 (360)
T TIGR03597 91 NPVLLVGNKIDLLP--KSVNLSKIKEWMKKRAKELGLKPVDIILVSAKK----GNGIDELLDKIKKARNKKDVYVVGVTN 164 (360)
T ss_pred CCEEEEEEchhhCC--CCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCC----CCCHHHHHHHHHHHhCCCeEEEECCCC
Confidence 45578999986432 223466677777777788876544666654432 123677888888777778999999999
Q ss_pred CcHHHHHHHH
Q 025396 93 LPLEIFTYVL 102 (253)
Q Consensus 93 ~~~~~~~~~~ 102 (253)
-..+.+-..+
T Consensus 165 vGKStliN~l 174 (360)
T TIGR03597 165 VGKSSLINKL 174 (360)
T ss_pred CCHHHHHHHH
Confidence 9666554443
No 84
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=46.67 E-value=1.4e+02 Score=24.27 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=41.5
Q ss_pred HHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEec-CCcHHHHHHHHHhCCCCCcceEEecCCCC
Q 025396 44 LARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGIT-GLPLEIFTYVLDRMPPGAVDVILSYCHYS 120 (253)
Q Consensus 44 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvs-n~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 120 (253)
+..+|.|++-+.+ .+..+. ....+..+.+.+.. .+.+..+||. |.+++.+.++++.. .++++ |+|-+
T Consensus 19 ~~~~Gad~iGfI~--~~~S~R--~V~~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~---~~d~v--QLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVF--YPKSPR--YVSPEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETV---PLDLL--QLHGD 86 (210)
T ss_pred HHHcCCCEEEEcc--CCCCCC--cCCHHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhc---CCCEE--EECCC
Confidence 4468999999863 332221 11234444444433 3568999998 46899999998876 45555 56643
No 85
>PLN02590 probable tyrosine decarboxylase
Probab=46.04 E-value=64 Score=30.39 Aligned_cols=60 Identities=10% Similarity=-0.014 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecC
Q 025396 33 AERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITG 92 (253)
Q Consensus 33 ~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn 92 (253)
.+..+-+++++++-||+..-.+..+--...++..+.....-+++++.+++|++=.+=|++
T Consensus 235 S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaT 294 (539)
T PLN02590 235 SDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICAT 294 (539)
T ss_pred cCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 345667888888888876544555443211123344566667777777888665544443
No 86
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.95 E-value=65 Score=24.77 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=48.8
Q ss_pred ccEEEecCCcHHHHH-HHHHhCCCCCcceEEecCCCCCCc-------------ccHhhHHHHH--HhcCCeEEecccccc
Q 025396 85 IRFIGITGLPLEIFT-YVLDRMPPGAVDVILSYCHYSIND-------------STLEDLLPYL--KSKGVGVISASPLAM 148 (253)
Q Consensus 85 i~~iGvsn~~~~~~~-~~~~~~~~~~~~~~~~q~~~~~~~-------------~~~~~~~~~~--~~~gi~v~~~~pl~~ 148 (253)
+...|+|..+...+. .+........++.+.+++.-|=.. .+.+.+++.+ +..+..++..+|+..
T Consensus 36 v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~ 115 (191)
T cd01834 36 FRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAY 115 (191)
T ss_pred EEEcccCccchhhhhhhhhcccccCCCCEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHcccCCCcEEEECCccc
Confidence 445677777665554 222222222456666655433211 1234688888 566888888777653
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 025396 149 GLLTDNGPPEWHPASPELKSACKAAAARCKEKGKN 183 (253)
Q Consensus 149 G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 183 (253)
....... +.............+.++++|+++++.
T Consensus 116 ~~~~~~~-~~~~~~~~~~~~~n~~l~~~a~~~~~~ 149 (191)
T cd01834 116 EANEDPL-PDGAEYNANLAAYADAVRELAAENGVA 149 (191)
T ss_pred CCCCCCC-CChHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 2111100 000001122333345567777777764
No 87
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=45.77 E-value=1.1e+02 Score=22.13 Aligned_cols=64 Identities=22% Similarity=0.124 Sum_probs=43.4
Q ss_pred CCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCC---CcccEEEeccCCCCChhhhHHhHHHHHHHHHHc
Q 025396 12 PRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQL---DYVDILQCHDIEFGSLDQIVNETIPALQKQKEA 82 (253)
Q Consensus 12 ~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~---d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~ 82 (253)
.|=.+.|+-|++. ...++.+++.+.+.++.... ...|++++-.+...+ ....+..+.|..+.+.
T Consensus 38 ~R~GisVsKKvgk-----AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~--~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGN-----AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAE--LDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCc-----hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCccc--CCHHHHHHHHHHHHHH
Confidence 3445667777765 46788899999998887643 357999999885332 3355666666665554
No 88
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=45.57 E-value=1.3e+02 Score=27.05 Aligned_cols=72 Identities=13% Similarity=0.020 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccc
Q 025396 72 TIPALQKQKEAGKIR-FIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPL 146 (253)
Q Consensus 72 ~~~aL~~l~~~G~i~-~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 146 (253)
.++.+.++.+...+- +.|-|.++.+.+.++++.. .+++++.-+...---.+..++.+.|+++|+.+..++..
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~---avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN---AVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC---CCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 466777777776555 5666667778888887753 45665422221111122347899999999999887654
No 89
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=45.49 E-value=40 Score=29.71 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=54.7
Q ss_pred EEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCC----cHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHH
Q 025396 55 LQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGL----PLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLL 130 (253)
Q Consensus 55 ~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 130 (253)
++||.|= ..+..+.+.|+++-.+-+|.+|=++-+ +...+..++++...|+--.+++.+...+.+...-...
T Consensus 11 iLlh~PY-----~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~~S~iv~aLi~AA~nGK~Vtv~vELkARFDEe~Ni~Wa 85 (352)
T PF13090_consen 11 ILLHHPY-----ESFDPVVDFLREAAEDPDVLAIKITLYRVASNSPIVNALIEAAENGKQVTVLVELKARFDEENNIHWA 85 (352)
T ss_dssp EEEECTT-----B-TCHHHHHHHHHCC-TTEEEEEEEESSS-TT-HHHHHHHHHHHTT-EEEEEESTTSSSTTCCCCCCC
T ss_pred EEEECCc-----cccHHHHHHHHHHhcCCCccEEEEEEEecCCCCHHHHHHHHHHHcCCEEEEEEEEeccccHHHHhHHH
Confidence 5778771 236678889999999999999999977 5667777777666656556666777655553333455
Q ss_pred HHHHhcCCeEE
Q 025396 131 PYLKSKGVGVI 141 (253)
Q Consensus 131 ~~~~~~gi~v~ 141 (253)
+...+.|+.|+
T Consensus 86 ~~Le~aGv~Vi 96 (352)
T PF13090_consen 86 KRLEEAGVHVI 96 (352)
T ss_dssp HHHHHCT-EEE
T ss_pred hhHHhcCeEEE
Confidence 55667788776
No 90
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=45.37 E-value=2.4e+02 Score=26.25 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=56.1
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHc-----CCccEEEecCCc----------HHHHHHHH
Q 025396 38 RSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEA-----GKIRFIGITGLP----------LEIFTYVL 102 (253)
Q Consensus 38 ~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~-----G~i~~iGvsn~~----------~~~~~~~~ 102 (253)
+.+++..++++ +.-=++-+.+ .++...+..-++|++.+.++ |+|..+=|+.-+ ..+++++.
T Consensus 273 ~~~~~lr~~~~-~~kiIl~VDR---LDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v 348 (487)
T TIGR02398 273 EMMERIRSELA-GVKLILSAER---VDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAV 348 (487)
T ss_pred HHHHHHHHHcC-CceEEEEecc---cccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHH
Confidence 33455555666 3333444444 46666788889999997653 677777554421 23444444
Q ss_pred HhCC--CCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccc
Q 025396 103 DRMP--PGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGL 150 (253)
Q Consensus 103 ~~~~--~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~ 150 (253)
..+. .+..+.. .+.|....-..+++..+.+..++.++. |+.-|+
T Consensus 349 ~~IN~~fg~~~~~--pv~~~~~~v~~~el~alYr~ADV~lvT--~lrDGm 394 (487)
T TIGR02398 349 GRINGRFARIGWT--PLQFFTRSLPYEEVSAWFAMADVMWIT--PLRDGL 394 (487)
T ss_pred HHHhhccCCCCCc--cEEEEcCCCCHHHHHHHHHhCCEEEEC--cccccc
Confidence 4331 1111111 111111122225788889999888775 665553
No 91
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=44.97 E-value=60 Score=22.01 Aligned_cols=28 Identities=7% Similarity=0.105 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q 025396 163 SPELKSACKAAAARCKEKGKNISKIAMQ 190 (253)
Q Consensus 163 ~~~~~~~~~~l~~la~~~~~s~~q~al~ 190 (253)
.+++.+.+.+|.++|++.+++..++|.-
T Consensus 47 P~~V~~sl~kL~~La~~N~v~feeLc~Y 74 (82)
T PF11020_consen 47 PEKVMDSLSKLYKLAKENNVSFEELCVY 74 (82)
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3678888999999999999999998754
No 92
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=44.90 E-value=1.7e+02 Score=24.26 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=48.1
Q ss_pred HHhHHHHHHHHHHcCC-ccEEEecCC------cHHHHHHHHHhCCCCCcceEEecCCCCCCcc------cHhhHHHHHHh
Q 025396 69 VNETIPALQKQKEAGK-IRFIGITGL------PLEIFTYVLDRMPPGAVDVILSYCHYSINDS------TLEDLLPYLKS 135 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~-i~~iGvsn~------~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~------~~~~~~~~~~~ 135 (253)
....++.++++++.|. |..||+=.| +++.+...++....-...+....+....... ..+++++.|.+
T Consensus 135 ~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~ 214 (254)
T smart00633 135 RQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLA 214 (254)
T ss_pred HHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHc
Confidence 3567888999999988 999998655 4667777766432223445554555433221 13478888888
Q ss_pred cC--CeEEecc
Q 025396 136 KG--VGVISAS 144 (253)
Q Consensus 136 ~g--i~v~~~~ 144 (253)
+. .+++-|.
T Consensus 215 ~p~v~gi~~Wg 225 (254)
T smart00633 215 HPAVTGVTVWG 225 (254)
T ss_pred CCCeeEEEEeC
Confidence 75 5555443
No 93
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=44.53 E-value=86 Score=27.64 Aligned_cols=73 Identities=11% Similarity=0.042 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccccc
Q 025396 72 TIPALQKQKEAGKIR-FIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLA 147 (253)
Q Consensus 72 ~~~aL~~l~~~G~i~-~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 147 (253)
.++.+.++.++..+. +.|=+-++...+..+++.. .+++++.-....=--.+..++..+|+++|+.++..+.+.
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~---~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~ 300 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRG---AADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLE 300 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC---CCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcch
Confidence 567777777776555 6666667888888888763 445553222221111223478899999999988654333
No 94
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=44.22 E-value=2.4e+02 Score=25.37 Aligned_cols=75 Identities=8% Similarity=0.061 Sum_probs=44.1
Q ss_pred HhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEE--ecCCCCCCcccHhhHHHHHHhcCCeEEeccccc
Q 025396 70 NETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVIL--SYCHYSINDSTLEDLLPYLKSKGVGVISASPLA 147 (253)
Q Consensus 70 ~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~--~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 147 (253)
..++..+..+.+.+.++.+-+...+.+.+++.++. ....++ +..|+...-.+.+++.+.|+++|+-++.-..++
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~----~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALAQ----SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc----CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCc
Confidence 34555555655555566666655566766665532 233333 333443333445689999999999888555544
Q ss_pred c
Q 025396 148 M 148 (253)
Q Consensus 148 ~ 148 (253)
.
T Consensus 186 ~ 186 (405)
T PRK08776 186 S 186 (405)
T ss_pred c
Confidence 3
No 95
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=43.59 E-value=84 Score=30.50 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=54.5
Q ss_pred EEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCC----cHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHH
Q 025396 55 LQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGL----PLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLL 130 (253)
Q Consensus 55 ~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 130 (253)
++||.|- .....+.+.++++..+-.|.+|-+.-+ +...+..++++...|.--.+++.+...+.........
T Consensus 332 iLLh~PY-----~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~ii~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa 406 (672)
T TIGR03705 332 ILLHHPY-----ESFDPVVEFLRQAAEDPDVLAIKQTLYRTSKDSPIIDALIEAAENGKEVTVVVELKARFDEEANIRWA 406 (672)
T ss_pred EEEECCc-----cCHHHHHHHHHHHhcCCCceEEEEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEehhhccchhhHHHH
Confidence 6777772 235678889999999999999999987 5667777777665443333444544444443333556
Q ss_pred HHHHhcCCeEE
Q 025396 131 PYLKSKGVGVI 141 (253)
Q Consensus 131 ~~~~~~gi~v~ 141 (253)
+.+++.|+.|+
T Consensus 407 ~~le~aG~~vi 417 (672)
T TIGR03705 407 RRLEEAGVHVV 417 (672)
T ss_pred HHHHHcCCEEE
Confidence 66777887654
No 96
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=42.99 E-value=70 Score=29.64 Aligned_cols=52 Identities=27% Similarity=0.386 Sum_probs=43.4
Q ss_pred HHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHh
Q 025396 43 SLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDR 104 (253)
Q Consensus 43 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~ 104 (253)
.-+|+.+.|+|-+. ..++++++..++.+++|+..+||+-..-.+.+.++.+.
T Consensus 194 i~kR~~~gyld~~~----------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 194 IDKRLETKYCDEQT----------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred HHHHHhcCcceeEc----------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 34678889988432 23789999999999999999999999988999999874
No 97
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=41.71 E-value=1.2e+02 Score=26.72 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHcCCcc-EEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccc
Q 025396 71 ETIPALQKQKEAGKIR-FIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASP 145 (253)
Q Consensus 71 ~~~~aL~~l~~~G~i~-~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~p 145 (253)
+-++.+.+|.+...+. +.|=|.++...+..+++.. .+++++.-....---.+..++.+.|+++|+.++.++.
T Consensus 201 ~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~---a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 201 ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQER---LIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGP 273 (361)
T ss_pred ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhC---CCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCC
Confidence 4577788888887665 7777778899999988863 4555542222211112234789999999999987643
No 98
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=41.48 E-value=1.1e+02 Score=26.97 Aligned_cols=74 Identities=11% Similarity=-0.028 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccc
Q 025396 72 TIPALQKQKEAGKIR-FIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAM 148 (253)
Q Consensus 72 ~~~aL~~l~~~G~i~-~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 148 (253)
.++.+.++.+...+. +.|=|-++...+..+++.. .+++++.-....---.+..++...|+.+|+.++..+.+.+
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~---~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s 300 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKAS---AADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEG 300 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhC---CCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhh
Confidence 466777777776655 6777778888888888764 4555542222211112223788899999999987654443
No 99
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=41.31 E-value=2.4e+02 Score=24.58 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecc
Q 025396 72 TIPALQKQKEAGKIR-FIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 72 ~~~aL~~l~~~G~i~-~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 144 (253)
.++.+..+++.-.+- ..|=|.++++.+.++++.. .+++++.-....---.+..++...|+++|+.++..+
T Consensus 228 ~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~---~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 228 DLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG---AVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred CHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC---CCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 456666777765554 4444556888888888753 455554222221111222478999999999988755
No 100
>PRK05414 urocanate hydratase; Provisional
Probab=41.19 E-value=80 Score=29.40 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=55.5
Q ss_pred CCcEEEEeccccccCC--------------CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHH
Q 025396 13 RNEYIVSTKCGRYVDG--------------FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQK 78 (253)
Q Consensus 13 R~~~~I~tK~~~~~~~--------------~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~ 78 (253)
+.++|+++=+|--... .+.++. ..-+|+.+.|+|.+. ..++++++..++
T Consensus 166 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~-------ri~kR~~~gyld~~~----------~~Ldeal~~~~~ 228 (556)
T PRK05414 166 AGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDES-------RIDKRLRTGYLDEKA----------DDLDEALALAEE 228 (556)
T ss_pred ceeEEEEecCCccccccHHHHHhcCceEEEEEECHH-------HHHHHHhCCcceeEc----------CCHHHHHHHHHH
Confidence 6678888887652210 123333 334688889988542 237899999999
Q ss_pred HHHcCCccEEEecCCcHHHHHHHHHh
Q 025396 79 QKEAGKIRFIGITGLPLEIFTYVLDR 104 (253)
Q Consensus 79 l~~~G~i~~iGvsn~~~~~~~~~~~~ 104 (253)
.+++|+..+||+-..-.+.+.++.+.
T Consensus 229 a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 229 AKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred HHHcCCceEEEEeccHHHHHHHHHHc
Confidence 99999999999999988999988875
No 101
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=41.14 E-value=2.7e+02 Score=25.08 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=52.9
Q ss_pred cccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHH
Q 025396 51 YVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLL 130 (253)
Q Consensus 51 ~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 130 (253)
.+|++.||.... | +.++..++.++..+.-. .-+=+++.+++.+.++++.+...++-+ +.....+.+++.
T Consensus 69 ~~D~Ialr~~S~-D---Pae~fa~~vk~V~~a~~-~PLIL~~~D~evl~aale~~~~~kpLL------~aAt~eNyk~m~ 137 (386)
T PF03599_consen 69 GADMIALRLESG-D---PAEEFAKAVKKVAEAVD-VPLILCGCDPEVLKAALEACAGKKPLL------YAATEENYKAMA 137 (386)
T ss_dssp E-SEEEEE-GGG-S---THHHHHHHHHHHHHC-S-SEEEEESSHHHHHHHHHHHTTTS--EE------EEEBTTTHHHHH
T ss_pred cccEEEEEecCC-C---hHHHHHHHHHHHHHhcC-CCEEEEeCCHHHHHHHHHHhCcCCcEE------eEcCHHHHHHHH
Confidence 688999998631 1 13455555555554433 345555559999999999876433222 223344567899
Q ss_pred HHHHhcCCeEEecccccc
Q 025396 131 PYLKSKGVGVISASPLAM 148 (253)
Q Consensus 131 ~~~~~~gi~v~~~~pl~~ 148 (253)
+.|+++|..+.+++|..=
T Consensus 138 ~lA~~y~~pl~v~sp~Dl 155 (386)
T PF03599_consen 138 ALAKEYGHPLIVSSPIDL 155 (386)
T ss_dssp HHHHHCT-EEEEE-SSCH
T ss_pred HHHHHcCCeEEEEecccH
Confidence 999999999999997753
No 102
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=41.03 E-value=1.9e+02 Score=24.64 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=19.2
Q ss_pred CCCCcccHhh-HHHHHHhcCCeEE-ecccccc
Q 025396 119 YSINDSTLED-LLPYLKSKGVGVI-SASPLAM 148 (253)
Q Consensus 119 ~~~~~~~~~~-~~~~~~~~gi~v~-~~~pl~~ 148 (253)
+++.+++..+ +.+.|+.+||.++ .++|+-+
T Consensus 64 ~Tlv~~elr~~l~~~~~~~~i~~vdll~p~i~ 95 (269)
T PRK05339 64 YTLVDPELREILEERCAEFGIPCIDILGPLIA 95 (269)
T ss_pred EeCCCHHHHHHHHHHHHHcCCCEEeccHHHHH
Confidence 3566655554 4478888888877 5556543
No 103
>PLN02540 methylenetetrahydrofolate reductase
Probab=40.80 E-value=3.3e+02 Score=25.95 Aligned_cols=184 Identities=12% Similarity=0.144 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-C-C-h---hhhHHhHHHHHHHHHHc-CCccEEEecCCc---H---
Q 025396 29 FDFSAERVTRSIDESLARLQLDYVDILQCHDIEF-G-S-L---DQIVNETIPALQKQKEA-GKIRFIGITGLP---L--- 95 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~-~-~-~---~~~~~~~~~aL~~l~~~-G~i~~iGvsn~~---~--- 95 (253)
.+.++..+...++.. ..+|+. +++.|-+-.. . + + +.....+.+-++..++. |..-.|||+.+. +
T Consensus 68 rd~n~~~L~~~L~~a-~~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~ 144 (565)
T PLN02540 68 TNMPVEKIDHALETI-KSNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVI 144 (565)
T ss_pred cCCCHHHHHHHHHHH-HHCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCccc
Confidence 356677777776665 777765 4555554210 0 1 0 11122344444444443 556788888651 1
Q ss_pred ------------HHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCe--EE-ecccccccc-cCCCCCCCC
Q 025396 96 ------------EIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVG--VI-SASPLAMGL-LTDNGPPEW 159 (253)
Q Consensus 96 ------------~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~--v~-~~~pl~~G~-l~~~~~~~~ 159 (253)
..+..+.+..+- .-++++.|+-|+...- .+.++.|++.||. ++ +..|+..-. +.....-..
T Consensus 145 ~~~~~~~~~~~~~dl~~Lk~KvdA-GAdFiITQlfFD~d~f--~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~G 221 (565)
T PLN02540 145 GGDGLATPEAYQKDLAYLKEKVDA-GADLIITQLFYDTDIF--LKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCK 221 (565)
T ss_pred ccccccCCCChHHHHHHHHHHHHc-CCCEEeeccccCHHHH--HHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccC
Confidence 245666555544 5678998988865432 3788899999843 33 344443211 000000011
Q ss_pred CCCCHHHHHHHHHHHH---HHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHH
Q 025396 160 HPASPELKSACKAAAA---RCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAA 218 (253)
Q Consensus 160 ~~~~~~~~~~~~~l~~---la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~ 218 (253)
....+++.+.++...+ -.++.|+..+.-.++=++..+.--.-+-.++...-+.+.++.+
T Consensus 222 i~IP~~i~~rLe~~kddde~v~~~Gieia~e~~~~L~~~Gv~GiHfYTlN~e~~v~~ILe~l 283 (565)
T PLN02540 222 TKIPAEITAALEPIKDNDEAVKAYGIHLGTEMCKKILAHGIKGLHLYTLNLEKSALAILMNL 283 (565)
T ss_pred CcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEECccCChHHHHHHHHHc
Confidence 2223445544443311 1123344433333444445442223456666666666666644
No 104
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=40.66 E-value=1.2e+02 Score=25.04 Aligned_cols=69 Identities=14% Similarity=0.007 Sum_probs=38.9
Q ss_pred HHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCC-Cc-ceEEecCCCCCCcccHhhHHHHHHhcCC
Q 025396 69 VNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPG-AV-DVILSYCHYSINDSTLEDLLPYLKSKGV 138 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~-~~-~~~~~q~~~~~~~~~~~~~~~~~~~~gi 138 (253)
..++.+.|+.|++.|.--.| +||.+.+.+..+++..+.. .+ +.++..-......+.++-+...+++.|+
T Consensus 101 ~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~ 171 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGV 171 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCC
Confidence 56788889999999865555 6777777777776643221 22 4433211111122333345666666665
No 105
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.61 E-value=1.3e+02 Score=24.84 Aligned_cols=91 Identities=10% Similarity=0.062 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHH-HHHcCCccEEEecCC-cHHHHHHHHHhCCCCC
Q 025396 32 SAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQK-QKEAGKIRFIGITGL-PLEIFTYVLDRMPPGA 109 (253)
Q Consensus 32 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~-l~~~G~i~~iGvsn~-~~~~~~~~~~~~~~~~ 109 (253)
+.+... .+-+.|-+-|...+.+-+ -.| + ..+.++.|.+ ..++.-=-.+|+.+- +.++++.+++. .
T Consensus 25 ~~~~a~-~~~~al~~gGi~~iEiT~-~tp---~----a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~a----G 91 (222)
T PRK07114 25 DVEVAK-KVIKACYDGGARVFEFTN-RGD---F----AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQL----G 91 (222)
T ss_pred CHHHHH-HHHHHHHHCCCCEEEEeC-CCC---c----HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHc----C
Confidence 344333 344556666776666433 222 1 2344555432 223322246999984 99999999887 4
Q ss_pred cceEEecCCCCCCcccHhhHHHHHHhcCCeEEe
Q 025396 110 VDVILSYCHYSINDSTLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 110 ~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~ 142 (253)
-+|++.+ ++. ++++++|+++|+.++.
T Consensus 92 A~FiVsP---~~~----~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 92 ANFIVTP---LFN----PDIAKVCNRRKVPYSP 117 (222)
T ss_pred CCEEECC---CCC----HHHHHHHHHcCCCEeC
Confidence 5666532 222 4899999999999984
No 106
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=40.41 E-value=53 Score=18.34 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHH
Q 025396 169 ACKAAAARCKEKGKNISKIAM 189 (253)
Q Consensus 169 ~~~~l~~la~~~~~s~~q~al 189 (253)
..+.+.++|++.|.|.+++.-
T Consensus 10 ~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 10 LYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHH
Confidence 356789999999999877643
No 107
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=40.27 E-value=1.4e+02 Score=23.37 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhCCCcc----cEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCC-Cc
Q 025396 36 VTRSIDESLARLQLDYV----DILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPG-AV 110 (253)
Q Consensus 36 i~~~l~~sL~~L~~d~i----Dl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~-~~ 110 (253)
.+..++..++.+|.+.- +.+.-... . .....++.++|+.|++.| ++-.-+||.+...+...++..+.. .+
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~-~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~gl~~~f 135 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYL---R-LPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHAGLDDPF 135 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHh---c-CCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHCCChhhh
Confidence 35566777777776521 11110000 1 123468889999999888 555667888878777777765421 24
Q ss_pred ceEEecCCCCCCcccHhhHHHHHHhcCCe
Q 025396 111 DVILSYCHYSINDSTLEDLLPYLKSKGVG 139 (253)
Q Consensus 111 ~~~~~q~~~~~~~~~~~~~~~~~~~~gi~ 139 (253)
+.+...-......+.++-+...|++.|+.
T Consensus 136 d~i~~s~~~~~~KP~~~~~~~~~~~~~~~ 164 (198)
T TIGR01428 136 DAVLSADAVRAYKPAPQVYQLALEALGVP 164 (198)
T ss_pred heeEehhhcCCCCCCHHHHHHHHHHhCCC
Confidence 44432222222223333355566666653
No 108
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.94 E-value=1.6e+02 Score=22.19 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=52.3
Q ss_pred CCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcc---------cHhhHHHHHHh--cCCeEEeccccccccc
Q 025396 83 GKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDS---------TLEDLLPYLKS--KGVGVISASPLAMGLL 151 (253)
Q Consensus 83 G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~---------~~~~~~~~~~~--~gi~v~~~~pl~~G~l 151 (253)
=.+...|++..+.+.+.+-++......++.+.+++..|=... ..++++..+++ .+..|+..+|.-.+-
T Consensus 22 ~~v~n~g~~G~~~~~~~~~l~~~~~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~- 100 (169)
T cd01828 22 VKVANRGISGDTTRGLLARLDEDVALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGE- 100 (169)
T ss_pred CceEecCcccccHHHHHHHHHHHhccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCc-
Confidence 346777887776665544443221235677777666543221 12367888888 788887766554320
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 025396 152 TDNGPPEWHPASPELKSACKAAAARCKEKGKN 183 (253)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 183 (253)
............-+.++++|++.++.
T Consensus 101 ------~~~~~~~~~~~~n~~l~~~a~~~~~~ 126 (169)
T cd01828 101 ------LKSIPNEQIEELNRQLAQLAQQEGVT 126 (169)
T ss_pred ------cCcCCHHHHHHHHHHHHHHHHHCCCE
Confidence 01112234444445567777777764
No 109
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=39.04 E-value=1.2e+02 Score=24.46 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=42.4
Q ss_pred HHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEec-CCcHHHHHHHHHhCCCCCcceEEecCCC
Q 025396 43 SLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGIT-GLPLEIFTYVLDRMPPGAVDVILSYCHY 119 (253)
Q Consensus 43 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvs-n~~~~~~~~~~~~~~~~~~~~~~~q~~~ 119 (253)
.+..+|.||+-+.+.. ..+. ....+....+.+.. .+.++.+||. |.+++.+.++.+.. .++++ |+|-
T Consensus 16 ~~~~~GaD~iGfIf~~--~SpR--~V~~~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~---~~d~v--QLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYE--KSKR--HQTITQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSNT---SINTI--QLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCC--CCcc--cCCHHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhC---CCCEE--EECC
Confidence 4566999999986433 2221 11234444444433 3568899997 67999999998876 45555 5664
No 110
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=38.76 E-value=66 Score=28.99 Aligned_cols=97 Identities=20% Similarity=0.172 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCC
Q 025396 29 FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPG 108 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~ 108 (253)
.+++.+.+.+.+++..+.= +|.+.+|.- -+.+.++.++++|++. |+-+-.-+.+...+-..+
T Consensus 134 ~~~t~d~~~~~ie~qa~~G----VDfmtiH~g----------it~~~~~~~~~~~R~~--giVSRGGs~l~~WM~~n~-- 195 (420)
T PF01964_consen 134 VDMTEDDFFDVIEKQAKDG----VDFMTIHCG----------ITRETLERLKKSGRIM--GIVSRGGSILAAWMLHNG-- 195 (420)
T ss_dssp GG--HHHHHHHHHHHHHHT------EEEE-TT------------GGGGGGGT--TSSS------HHHHHHHHHHHHHT--
T ss_pred hhCCHHHHHHHHHHHHHcC----CCEEEEccc----------hhHHHHHHHhhhcccc--CccccchHHHHHHHHhcC--
Confidence 4688899999999988864 889999973 1233455667777654 555544444443333211
Q ss_pred CcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccccC
Q 025396 109 AVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLLT 152 (253)
Q Consensus 109 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l~ 152 (253)
. -|.+.....++++.|+++++.+.--..|..|-+.
T Consensus 196 ~---------ENPly~~fD~lLeI~k~yDVtLSLGDglRPG~i~ 230 (420)
T PF01964_consen 196 K---------ENPLYEHFDRLLEIAKEYDVTLSLGDGLRPGCIA 230 (420)
T ss_dssp S-----------HHHHTHHHHHHHHTTTT-EEEE--TT--SSGG
T ss_pred C---------cCcHHHhHHHHHHHHHHhCeeEecccccCCCCcC
Confidence 1 1122233357889999999888754444444443
No 111
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=38.60 E-value=1.6e+02 Score=21.68 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=44.7
Q ss_pred CCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCC---cccEEEeccCCCCChhhhHHhHHHHHHHHHHc
Q 025396 12 PRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLD---YVDILQCHDIEFGSLDQIVNETIPALQKQKEA 82 (253)
Q Consensus 12 ~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d---~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~ 82 (253)
+|=.+.|+-|+|. ...++.+++-+.++.+.+..+ -.|++++-.+...+ ....+..+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~-----AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~--~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGN-----AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAAT--ASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccc-----hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECccccc--CCHHHHHHHHHHHHHH
Confidence 4556778888875 467889999999999887764 36999999875332 3345666666665543
No 112
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=38.44 E-value=1.7e+02 Score=23.45 Aligned_cols=69 Identities=20% Similarity=0.136 Sum_probs=39.2
Q ss_pred HHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCC-CCcceEEecCCCCCCcccHhhHHHHHHhcCC
Q 025396 69 VNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPP-GAVDVILSYCHYSINDSTLEDLLPYLKSKGV 138 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi 138 (253)
..++.+.|+.++++|.--+| +||.....+...++..+. +.++.+...-......+.++-+...|++.|+
T Consensus 94 ~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 163 (222)
T PRK10826 94 LPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGV 163 (222)
T ss_pred CCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCC
Confidence 46788888888888865555 777777777777665432 1233332211111122333346666777665
No 113
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=38.40 E-value=1.8e+02 Score=26.36 Aligned_cols=71 Identities=13% Similarity=0.072 Sum_probs=43.0
Q ss_pred HHHHHHHHHc------CCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccc
Q 025396 73 IPALQKQKEA------GKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPL 146 (253)
Q Consensus 73 ~~aL~~l~~~------G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 146 (253)
++.+.++.+. +-=-..+=|.++.+.+..+++.- ..+++++-++..=--.+..++.++|+.+||.++..+..
T Consensus 281 ~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~---a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 281 IEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAK---AGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhC---CCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 5556666554 33334455566788888887753 45555433332111122347899999999999986554
No 114
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=38.33 E-value=1.6e+02 Score=21.59 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=43.5
Q ss_pred CCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCC---CcccEEEeccCCCCChhhhHHhHHHHHHHHHHc
Q 025396 13 RNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQL---DYVDILQCHDIEFGSLDQIVNETIPALQKQKEA 82 (253)
Q Consensus 13 R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~---d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~ 82 (253)
|=.+.|+-|++. ....++.+++.+.+.++.+.. ...|++++-.+...+ ....+..+.|..+.+.
T Consensus 48 R~G~~VsKK~~~----~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~--~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSK----KAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAE--CNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEeccccc----chhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCccc--CCHHHHHHHHHHHHHH
Confidence 333556666543 246788999999999987653 357999999985332 3456777777776655
No 115
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=37.81 E-value=1.1e+02 Score=26.18 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=39.4
Q ss_pred ccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHH
Q 025396 52 VDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLD 103 (253)
Q Consensus 52 iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~ 103 (253)
+++++|..|..+=+.....++++.|.++.++|. +.|=+|+|..+.++.+.+
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 578888888543222335689999999999997 789999999998887744
No 116
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=37.73 E-value=1.5e+02 Score=25.99 Aligned_cols=71 Identities=18% Similarity=0.128 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHcCCcc-EEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecc
Q 025396 71 ETIPALQKQKEAGKIR-FIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 71 ~~~~aL~~l~~~G~i~-~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 144 (253)
+.++.+..|.+..-+. +.|=|.++.+.+..+++.. .+++++......---....++.+.|+++|+.++..+
T Consensus 214 ~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~---~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 214 ENVEALAEIAARTTIPIATGERLFSRWDFKELLEDG---AVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhC---CCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 4577788887775554 6666777888888887753 456654333322112223478999999999998655
No 117
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=37.69 E-value=3.6e+02 Score=25.56 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEe----cCC--cHHHHHHHHHhCCC
Q 025396 34 ERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGI----TGL--PLEIFTYVLDRMPP 107 (253)
Q Consensus 34 ~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGv----sn~--~~~~~~~~~~~~~~ 107 (253)
+...+-|++.++..+-.+.+ -|-.--+-....+.++++-|.+++++|+||.+.+ +|- ....+..+.+.++
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~kelip- 435 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIP- 435 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhcc-
Confidence 67788899999999888877 2322111112335677778899999999998743 332 2234555555542
Q ss_pred CCcceEEecCCCCCCcccHhhHHHHHHhcCCeEE-ecccccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 025396 108 GAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVI-SASPLAMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGKN 183 (253)
Q Consensus 108 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~-~~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 183 (253)
-+++..-..-.... -.-+++|...||.-+ .+.+-. ....+..-..++|+.+|++
T Consensus 436 --rD~lVLt~GCgk~~---~~~~~vc~~lGIPpVLd~GqCn-----------------D~~r~~~la~aLae~lgvd 490 (576)
T COG1151 436 --RDILVLTLGCGKYR---FNKADVGDILGIPRVLDFGQCN-----------------DIYRIIVLALALAEVLGLD 490 (576)
T ss_pred --cceEEEecccchhh---hhhhccccccCCCccccccccc-----------------hHHHHHHHHHHHHHHhCCC
Confidence 23332111111111 133578888888754 332221 1223333456788888875
No 118
>PRK10206 putative oxidoreductase; Provisional
Probab=37.26 E-value=1e+02 Score=26.99 Aligned_cols=19 Identities=0% Similarity=0.029 Sum_probs=8.6
Q ss_pred HHHHHcCCccEEEecCCcH
Q 025396 77 QKQKEAGKIRFIGITGLPL 95 (253)
Q Consensus 77 ~~l~~~G~i~~iGvsn~~~ 95 (253)
+++.++..|..+-|++-+.
T Consensus 57 ~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 57 DEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred HHHhcCCCCCEEEEeCCch
Confidence 3444444445555544433
No 119
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=37.16 E-value=87 Score=26.75 Aligned_cols=90 Identities=16% Similarity=0.266 Sum_probs=51.3
Q ss_pred HHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecC------CcHHHHHHHHHhCCCCCcceEEec
Q 025396 43 SLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITG------LPLEIFTYVLDRMPPGAVDVILSY 116 (253)
Q Consensus 43 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn------~~~~~~~~~~~~~~~~~~~~~~~q 116 (253)
++++...+..|+..+..|- +--...+..+..... +|=|+- |+...+.++.+..+ +.+..+-
T Consensus 155 ~~kk~a~E~~~~~IIDsaa--------G~gCpVi~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~---ip~~iVi 221 (284)
T COG1149 155 ALKKHAKELADLLIIDSAA--------GTGCPVIASLKGADL--AILVTEPTPFGLHDLKRALELVEHFG---IPTGIVI 221 (284)
T ss_pred HHHHhhhhhcceeEEecCC--------CCCChHHHhhccCCE--EEEEecCCccchhHHHHHHHHHHHhC---CceEEEE
Confidence 4444444448999999882 111222333333333 333332 34455555666553 3333334
Q ss_pred CCCCCCcccHhhHHHHHHhcCCeEEecccccc
Q 025396 117 CHYSINDSTLEDLLPYLKSKGVGVISASPLAM 148 (253)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 148 (253)
+.|+... .++.++|++.|+.+++--|+..
T Consensus 222 Nr~~~g~---s~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 222 NRYNLGD---SEIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred ecCCCCc---hHHHHHHHHcCCCeeEECCcch
Confidence 5554444 2789999999999999888864
No 120
>PRK10200 putative racemase; Provisional
Probab=37.13 E-value=2.4e+02 Score=23.22 Aligned_cols=72 Identities=14% Similarity=0.014 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC---------hhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHH
Q 025396 31 FSAERVTRSIDESLARLQLDYVDILQCHDIEFGS---------LDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYV 101 (253)
Q Consensus 31 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~---------~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~ 101 (253)
.+-+..++-++..-.+.+.++++.+.+|+++.++ ++.+.....+.++.|.+.| +..|-++..+...+...
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~~ 92 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVADA 92 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHHHHH
Confidence 3456666666677778889999999999997543 2234445666677777776 79999998877665444
Q ss_pred HH
Q 025396 102 LD 103 (253)
Q Consensus 102 ~~ 103 (253)
++
T Consensus 93 l~ 94 (230)
T PRK10200 93 IE 94 (230)
T ss_pred HH
Confidence 44
No 121
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=37.07 E-value=90 Score=28.62 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=47.7
Q ss_pred HhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecC
Q 025396 45 ARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYC 117 (253)
Q Consensus 45 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~ 117 (253)
+||.+.|+|.. ...++++++-.++..+.|+-.+||+-..-.+.+.++++..- .++++.-|.
T Consensus 205 ~Rl~t~y~d~~----------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~--~pD~vtDQT 265 (561)
T COG2987 205 KRLRTGYLDEI----------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGI--RPDLVTDQT 265 (561)
T ss_pred HHHhcchhhhh----------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCC--CCceecccc
Confidence 67888898832 23378999999999999999999999998999999988531 455555443
No 122
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=36.68 E-value=2.5e+02 Score=23.39 Aligned_cols=98 Identities=19% Similarity=0.097 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHc-CCccEEEecCCcHHHHHHHHHhCCCC
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEA-GKIRFIGITGLPLEIFTYVLDRMPPG 108 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~-G~i~~iGvsn~~~~~~~~~~~~~~~~ 108 (253)
.++.+.. ..+-+.|.++|++++++-+ | .. -..-++.++.+.+. ..++..+.+..+.+.++.+.+.
T Consensus 16 ~~~~~~k-~~i~~~L~~~Gv~~iE~g~---p---~~---~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~---- 81 (259)
T cd07939 16 AFSREEK-LAIARALDEAGVDEIEVGI---P---AM---GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC---- 81 (259)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEec---C---CC---CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC----
Confidence 3555544 4455569999999999852 3 11 12335666666663 3477777777778888777664
Q ss_pred CcceEEecCCCCCC---------c----ccHhhHHHHHHhcCCeEE
Q 025396 109 AVDVILSYCHYSIN---------D----STLEDLLPYLKSKGVGVI 141 (253)
Q Consensus 109 ~~~~~~~q~~~~~~---------~----~~~~~~~~~~~~~gi~v~ 141 (253)
.++.+..-+..+-. . ....+.+++|+++|+.+.
T Consensus 82 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 82 GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 22322211111111 1 112367889999998765
No 123
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=36.42 E-value=52 Score=19.68 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHH
Q 025396 173 AAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTA 217 (253)
Q Consensus 173 l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a 217 (253)
|+++|+..|+|++.+. .+|+.+. -+...+.+++.+.++.
T Consensus 2 i~dIA~~agvS~~TVS--r~ln~~~----~vs~~tr~rI~~~a~~ 40 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVS--RVLNGPP----RVSEETRERILEAAEE 40 (46)
T ss_dssp HHHHHHHHTSSHHHHH--HHHTTCS----SSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHH--HHHhCCC----CCCHHHHHHHHHHHHH
Confidence 6899999999998754 4455441 2344455555554443
No 124
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=36.00 E-value=20 Score=27.60 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=45.7
Q ss_pred EecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCe-EEecccccccccCCCCCCCCCCCCHHHH
Q 025396 89 GITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVG-VISASPLAMGLLTDNGPPEWHPASPELK 167 (253)
Q Consensus 89 Gvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~-v~~~~pl~~G~l~~~~~~~~~~~~~~~~ 167 (253)
|||.++...+.+.....+. ..+.. +...+.. ..-.||..+||. ++.-|.+..
T Consensus 58 ~VC~~qvr~Fn~~aa~~~~--~~Vl~--IS~DLPF----Aq~RfC~aeGi~nv~~lSd~r~------------------- 110 (158)
T COG2077 58 PVCATQVRKFNEEAAKLGN--TVVLC--ISMDLPF----AQKRFCGAEGIENVITLSDFRD------------------- 110 (158)
T ss_pred chhhHHHHHHHHHHhccCC--cEEEE--EeCCChh----HHhhhhhhcCcccceEhhhhhh-------------------
Confidence 4556566666666555432 33333 2223322 456789999998 665554432
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhhhcCC
Q 025396 168 SACKAAAARCKEKGKNISKIAMQYSLSNK 196 (253)
Q Consensus 168 ~~~~~l~~la~~~~~s~~q~al~~~l~~~ 196 (253)
+++.+.+|+-..+..|+=++++.
T Consensus 111 ------~~Fge~yGv~I~egpL~gLlARa 133 (158)
T COG2077 111 ------RAFGENYGVLINEGPLAGLLARA 133 (158)
T ss_pred ------hhhhHhhCEEeccccccCeeeeE
Confidence 45677888888888777777765
No 125
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=35.91 E-value=1.5e+02 Score=25.41 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=50.5
Q ss_pred hhHHHHHHhcCCeEEecccccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC------CHHHHHHHhhhcCCCcce
Q 025396 127 EDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGK------NISKIAMQYSLSNKDISS 200 (253)
Q Consensus 127 ~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~~v~~ 200 (253)
+.+.+.+.+-++-++.-++-.+. -.+|.++|++.|. ++.++=..|.-....| .
T Consensus 204 ~Avk~la~~~Dl~iVVG~~nSSN--------------------s~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~V-G 262 (294)
T COG0761 204 DAVKELAPEVDLVIVVGSKNSSN--------------------SNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTV-G 262 (294)
T ss_pred HHHHHHhhcCCEEEEECCCCCcc--------------------HHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEE-E
Confidence 35777788877777764433321 1347899999887 5888888888885544 7
Q ss_pred EeeCCCCHHHHHHHHHHH
Q 025396 201 VLVGMNSVKQVQENVTAA 218 (253)
Q Consensus 201 vl~g~~~~~~l~en~~a~ 218 (253)
+-.|+|.|+-+-+++-..
T Consensus 263 vTAGAStPd~lV~~Vi~~ 280 (294)
T COG0761 263 VTAGASTPDWLVQEVIAK 280 (294)
T ss_pred EecCCCCCHHHHHHHHHH
Confidence 889999999987766543
No 126
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=35.88 E-value=1.4e+02 Score=25.43 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=68.5
Q ss_pred CcEEEEeccccccCCCCCCHHHHHHHHHHHH-------HhhCCCcccEEEeccCCC----------CChhhhHHhHHHHH
Q 025396 14 NEYIVSTKCGRYVDGFDFSAERVTRSIDESL-------ARLQLDYVDILQCHDIEF----------GSLDQIVNETIPAL 76 (253)
Q Consensus 14 ~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL-------~~L~~d~iDl~~lH~~~~----------~~~~~~~~~~~~aL 76 (253)
.-+++.+|..+.......+.+..++..+.-+ +.+...-.=.+=+|-.+. .+....+...++..
T Consensus 34 t~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA 113 (285)
T COG1831 34 THLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPAEVSRLAEAGRSPEEALEEMRHALELA 113 (285)
T ss_pred cEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 4578888886632222344555555444444 444443223333343211 12223345677778
Q ss_pred HHHHHcCCccEEEecCC-----cH-------HHHHHHHHhCCCCCcceEEecCC-CCCCcccHhhHHHHHHhcCC
Q 025396 77 QKQKEAGKIRFIGITGL-----PL-------EIFTYVLDRMPPGAVDVILSYCH-YSINDSTLEDLLPYLKSKGV 138 (253)
Q Consensus 77 ~~l~~~G~i~~iGvsn~-----~~-------~~~~~~~~~~~~~~~~~~~~q~~-~~~~~~~~~~~~~~~~~~gi 138 (253)
.+++.+|++-+||=+.+ +. +.+.++++... .+++.. |++ ++.......++-+++++.|+
T Consensus 114 ~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~--dvdc~v-qLHtes~~~~~~~~i~~~ak~~G~ 185 (285)
T COG1831 114 AKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAK--DVDCAV-QLHTESLDEETYEEIAEMAKEAGI 185 (285)
T ss_pred HHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhh--cCCCcE-EEecCCCChHHHHHHHHHHHHhCC
Confidence 88999999999887765 11 33344455432 234333 566 45555556689999999997
No 127
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=35.81 E-value=3.4e+02 Score=24.66 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=53.6
Q ss_pred HHhHHHHHHHHHHcCCccEEEecCC-cHHHHHHHHHhCCCCCcceEEecCC--CCCCcccHhhHHHHHHhcCCeEEeccc
Q 025396 69 VNETIPALQKQKEAGKIRFIGITGL-PLEIFTYVLDRMPPGAVDVILSYCH--YSINDSTLEDLLPYLKSKGVGVISASP 145 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~i~~iGvsn~-~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~~~~~~~~~~~~~gi~v~~~~p 145 (253)
..++...|+.... ++-|..++ +...+..+...+++ ..+.++..-+ +.+.-...+++.+.|+++|+-++.-.+
T Consensus 126 Y~gT~~~l~~~~~----~~gie~~~vd~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnT 200 (409)
T KOG0053|consen 126 YGGTLRILRKFLP----KFGGEGDFVDVDDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNT 200 (409)
T ss_pred cccHHHHHHHHHH----HhCceeeeechhhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCC
Confidence 4566666666655 34444444 66777777777665 4666665544 334445567899999999999999999
Q ss_pred ccccccC
Q 025396 146 LAMGLLT 152 (253)
Q Consensus 146 l~~G~l~ 152 (253)
++++.+.
T Consensus 201 f~~p~~~ 207 (409)
T KOG0053|consen 201 FGSPYNQ 207 (409)
T ss_pred cCccccc
Confidence 9887443
No 128
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=35.11 E-value=2.6e+02 Score=23.20 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=50.9
Q ss_pred HHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecC-CcHHHHHHHHHhCCCCCcceEEecCCCCC
Q 025396 43 SLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITG-LPLEIFTYVLDRMPPGAVDVILSYCHYSI 121 (253)
Q Consensus 43 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 121 (253)
.|+..| +|.+.+|..+..... -.--++.+.++++.-.+.-|.... .+++.+.+++... .++.++.---++.
T Consensus 163 ~l~~~G---~~~iivt~i~~~g~~--~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g---~~dgv~~g~a~~~ 234 (254)
T TIGR00735 163 EVEKLG---AGEILLTSMDKDGTK--SGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKG---KADAALAASVFHY 234 (254)
T ss_pred HHHHcC---CCEEEEeCcCcccCC--CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC---CcceeeEhHHHhC
Confidence 334554 567777776432110 112355566666665666666665 3778888887763 3454432111122
Q ss_pred CcccHhhHHHHHHhcCCeE
Q 025396 122 NDSTLEDLLPYLKSKGVGV 140 (253)
Q Consensus 122 ~~~~~~~~~~~~~~~gi~v 140 (253)
..-...++.++|+++|+.+
T Consensus 235 ~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 235 REITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCCHHHHHHHHHHCCCcc
Confidence 2233458899999999864
No 129
>PRK11579 putative oxidoreductase; Provisional
Probab=34.54 E-value=1.3e+02 Score=26.29 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=29.2
Q ss_pred HHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEE
Q 025396 75 ALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVI 141 (253)
Q Consensus 75 aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~ 141 (253)
-++++.+...|..+=|++-+..+...+...+.-++. ++.+-+......+..++++.|+++|+.++
T Consensus 55 ~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aGkh--Vl~EKPla~t~~ea~~l~~~a~~~g~~l~ 119 (346)
T PRK11579 55 EPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKH--VVVDKPFTVTLSQARELDALAKSAGRVLS 119 (346)
T ss_pred CHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCe--EEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 345555555566666655444444333333222221 22233333333333456666666665543
No 130
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=34.22 E-value=2.4e+02 Score=22.91 Aligned_cols=101 Identities=19% Similarity=0.213 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCc
Q 025396 31 FSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAV 110 (253)
Q Consensus 31 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~ 110 (253)
++.+ ....+-+.|.++|+++|++- .| .......+.++.+.+.... .+-.+++......++..++......+
T Consensus 11 ~~~~-~k~~i~~~L~~~Gv~~iEvg---~~---~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~ 81 (237)
T PF00682_consen 11 FSTE-EKLEIAKALDEAGVDYIEVG---FP---FASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGI 81 (237)
T ss_dssp --HH-HHHHHHHHHHHHTTSEEEEE---HC---TSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTS
T ss_pred cCHH-HHHHHHHHHHHhCCCEEEEc---cc---ccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccC
Confidence 4444 44555567999999999988 22 1111123444555555555 44455555666666665441111134
Q ss_pred ceEEecCCCCCCc-------------ccHhhHHHHHHhcCCeE
Q 025396 111 DVILSYCHYSIND-------------STLEDLLPYLKSKGVGV 140 (253)
Q Consensus 111 ~~~~~q~~~~~~~-------------~~~~~~~~~~~~~gi~v 140 (253)
+.+.+-.+.+-.. ....+.+.++++.|+.+
T Consensus 82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 4433333332210 11236889999999999
No 131
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=33.98 E-value=1.9e+02 Score=21.16 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=39.9
Q ss_pred CCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCC--CcccEEEeccCCCCChhhhHHhHHHHHHHHHH
Q 025396 12 PRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQL--DYVDILQCHDIEFGSLDQIVNETIPALQKQKE 81 (253)
Q Consensus 12 ~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~--d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~ 81 (253)
+|=.+.|+-|++. ....++.+++.+.++++.... +..|++++..+...+ ....++.+.|..+.+
T Consensus 44 ~R~G~~VsKK~~~----~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~--~~~~~l~~~l~~ll~ 109 (120)
T PRK04390 44 PRLGLVVGKKTAK----RAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDR--ATAKQAVAELAQLMA 109 (120)
T ss_pred ceEEEEEecccCc----chhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCccc--CCHHHHHHHHHHHHH
Confidence 3444666667543 246788899999998876543 246999999985332 234455555555443
No 132
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=33.94 E-value=1.3e+02 Score=26.96 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHcC-CccEEEecCC---cHHHHHHHHHhCCCCCcceE-EecCCCCCCcccHhhHHHHHHhcCCeEEeccc
Q 025396 71 ETIPALQKQKEAG-KIRFIGITGL---PLEIFTYVLDRMPPGAVDVI-LSYCHYSINDSTLEDLLPYLKSKGVGVISASP 145 (253)
Q Consensus 71 ~~~~aL~~l~~~G-~i~~iGvsn~---~~~~~~~~~~~~~~~~~~~~-~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~p 145 (253)
.+++.+..|.++| .|.|+.|-+. +.++++++++. ..+-+. |.-++-.=.-+..+++-+.|+++|+-+..-..
T Consensus 103 aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~---~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAv 179 (386)
T COG1104 103 AVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRP---DTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAV 179 (386)
T ss_pred HHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCC---CceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehh
Confidence 4778888887778 8999999876 66777766653 233222 21111111123346899999999987775555
Q ss_pred ccccc
Q 025396 146 LAMGL 150 (253)
Q Consensus 146 l~~G~ 150 (253)
-+-|.
T Consensus 180 Qa~Gk 184 (386)
T COG1104 180 QAVGK 184 (386)
T ss_pred hhcCc
Confidence 44443
No 133
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=33.90 E-value=38 Score=21.67 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.6
Q ss_pred HHHHHHHHhCCCHHHHH
Q 025396 172 AAAARCKEKGKNISKIA 188 (253)
Q Consensus 172 ~l~~la~~~~~s~~q~a 188 (253)
.+.+||+++|+|..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 47899999999998864
No 134
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=33.80 E-value=2.6e+02 Score=22.77 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=49.3
Q ss_pred HHhhCCCcccEEEec-cCCCCChhhhHHhHHHHHHHHHHcCCccEEEecC-CcHHHHHHHHHhCCCCCcceEEecCCCCC
Q 025396 44 LARLQLDYVDILQCH-DIEFGSLDQIVNETIPALQKQKEAGKIRFIGITG-LPLEIFTYVLDRMPPGAVDVILSYCHYSI 121 (253)
Q Consensus 44 L~~L~~d~iDl~~lH-~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 121 (253)
...+|.||+-+.+.- +|- ....+..+.+...... +..+||.. .+.+.+.++++.. .++.+ |+|-..
T Consensus 18 a~~~gad~iG~If~~~SpR-----~Vs~~~a~~i~~~v~~--~~~VgVf~n~~~~~i~~i~~~~---~ld~V--QlHG~e 85 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPR-----YVSPEQAREIASAVPK--VKVVGVFVNESIEEILEIAEEL---GLDAV--QLHGDE 85 (208)
T ss_pred HHHcCCCEEEEEEcCCCCC-----cCCHHHHHHHHHhCCC--CCEEEEECCCCHHHHHHHHHhc---CCCEE--EECCCC
Confidence 457899998877665 331 1123334444333333 88999986 5888999999876 44555 566543
Q ss_pred CcccHhhHHHHHHhc-CCeEE
Q 025396 122 NDSTLEDLLPYLKSK-GVGVI 141 (253)
Q Consensus 122 ~~~~~~~~~~~~~~~-gi~v~ 141 (253)
. .+.++..++. ++.++
T Consensus 86 ~----~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 86 D----PEYIDQLKEELGVPVI 102 (208)
T ss_pred C----HHHHHHHHhhcCCceE
Confidence 2 2455555554 36665
No 135
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=33.52 E-value=2.8e+02 Score=23.40 Aligned_cols=30 Identities=23% Similarity=0.524 Sum_probs=18.5
Q ss_pred CCCCcccHhh-HHHHHHhcCCeEE-ecccccc
Q 025396 119 YSINDSTLED-LLPYLKSKGVGVI-SASPLAM 148 (253)
Q Consensus 119 ~~~~~~~~~~-~~~~~~~~gi~v~-~~~pl~~ 148 (253)
+++.+.+..+ +...|+++||..+ .++|+-.
T Consensus 58 ~Tlv~~~lr~~l~~~~~~~~i~~~Dll~~~l~ 89 (255)
T PF03618_consen 58 YTLVDPELREYLEEFCREHGIPCVDLLGPLLS 89 (255)
T ss_pred EeCCCHHHHHHHHHHHHhcCCCEEeccHHHHH
Confidence 4556655554 4448888888776 5555543
No 136
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=33.46 E-value=3.9e+02 Score=24.61 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCCh-hhhHHhHHHHHHHHHHc-CCccE---------EEecCCcHHHHH
Q 025396 31 FSAERVTRSIDESLARLQLDYVDILQCHDIEFGSL-DQIVNETIPALQKQKEA-GKIRF---------IGITGLPLEIFT 99 (253)
Q Consensus 31 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~-~~~~~~~~~aL~~l~~~-G~i~~---------iGvsn~~~~~~~ 99 (253)
++.+.. ..+-..|.+.|++.|.+. +...++.. .-..+..|+.++.+.+. ..++. .|.+++..+.+.
T Consensus 23 ~~t~dk-l~ia~~Ld~~Gv~~IE~~--ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 23 MTTEEM-LPILEKLDNAGYHSLEMW--GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEec--CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHH
Confidence 334433 345556888899999982 22211110 00123467777777765 33442 566666555555
Q ss_pred HHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEe
Q 025396 100 YVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 100 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~ 142 (253)
+.++......++.+-+-...|-.+ +..+.+++++++|+.+.+
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~~-n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 100 SFVQKSVENGIDIIRIFDALNDVR-NLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHCCCCEEEEEEecCcHH-HHHHHHHHHHHcCCeEEE
Confidence 444421111345443323333222 456789999999987653
No 137
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=33.31 E-value=2.4e+02 Score=22.28 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=46.1
Q ss_pred CCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHH-HhhhhcCCCHHHHHHHHHHhccCCCCCCCCCCCC
Q 025396 182 KNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAA-SELALFGKDQEALTEVEAILKPVKNQTWPSGIHQ 252 (253)
Q Consensus 182 ~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~-~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 252 (253)
+|++.++-+-....+. ..+..+..++-..+..+ ..+ .+++..+.-++.++...+...|.++..+
T Consensus 3 ~t~~~l~~~~~a~~~~----~~~~~~k~~ll~~l~~a~~~l---gl~~~~l~vL~aLls~~~~~d~~~~~~p 67 (177)
T PF03428_consen 3 MTPAMLAAQRLAETPE----PGAGVTKWQLLRALKEARPAL---GLSDRALAVLDALLSFTPPDDWEPGRRP 67 (177)
T ss_pred CCHHHHHHHHHHhccC----CCCCCCHHHHHHHHHHHHHhc---CCChhHHHHHHHHHHhCCcccccCCCCc
Confidence 4566666665555442 34456777777777766 444 8899999999999999999999776543
No 138
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=32.92 E-value=2.5e+02 Score=22.20 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=49.8
Q ss_pred ccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHH
Q 025396 52 VDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLP 131 (253)
Q Consensus 52 iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 131 (253)
+|--++-|-+ ....+++.+.+.++++.|- +-+=+||.+...+..+.+..+ ++++. ....+....+..
T Consensus 35 lDNTLv~wd~----~~~tpe~~~W~~e~k~~gi-~v~vvSNn~e~RV~~~~~~l~---v~fi~-----~A~KP~~~~fr~ 101 (175)
T COG2179 35 LDNTLVPWDN----PDATPELRAWLAELKEAGI-KVVVVSNNKESRVARAAEKLG---VPFIY-----RAKKPFGRAFRR 101 (175)
T ss_pred ccCceecccC----CCCCHHHHHHHHHHHhcCC-EEEEEeCCCHHHHHhhhhhcC---Cceee-----cccCccHHHHHH
Confidence 4555555532 2336789999999999885 566789999999988888763 34432 233333346777
Q ss_pred HHHhcCCeE
Q 025396 132 YLKSKGVGV 140 (253)
Q Consensus 132 ~~~~~gi~v 140 (253)
++++.++..
T Consensus 102 Al~~m~l~~ 110 (175)
T COG2179 102 ALKEMNLPP 110 (175)
T ss_pred HHHHcCCCh
Confidence 777776543
No 139
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.79 E-value=3e+02 Score=23.10 Aligned_cols=86 Identities=14% Similarity=0.072 Sum_probs=45.5
Q ss_pred EEEeccCCCC-----------ChhhhHHhHHHHHHHHHHcCCccEEEecCCcH-------HHHHHHHHhCCCCCcceEEe
Q 025396 54 ILQCHDIEFG-----------SLDQIVNETIPALQKQKEAGKIRFIGITGLPL-------EIFTYVLDRMPPGAVDVILS 115 (253)
Q Consensus 54 l~~lH~~~~~-----------~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~-------~~~~~~~~~~~~~~~~~~~~ 115 (253)
-++||-|-.+ ......+++.+-++..+++ --.++|+.||.- +..+.+++..+. -.
T Consensus 79 evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~-v~~~~GlnNhmGs~~tsn~~aM~~~m~~Lk~--r~---- 151 (250)
T COG2861 79 EVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNK-VPDAVGLNNHMGSRFTSNEDAMEKLMEALKE--RG---- 151 (250)
T ss_pred EEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhh-CccceeehhhhhhhhcCcHHHHHHHHHHHHH--CC----
Confidence 3889988311 1223345777777766654 346899999843 334445554432 11
Q ss_pred cCCCCCCcccHh--hHHHHHHhcCCeEEecccccc
Q 025396 116 YCHYSINDSTLE--DLLPYLKSKGVGVISASPLAM 148 (253)
Q Consensus 116 q~~~~~~~~~~~--~~~~~~~~~gi~v~~~~pl~~ 148 (253)
-|.+.+.... -.-..+++-|+.++....|--
T Consensus 152 --l~flDs~T~a~S~a~~iAk~~gVp~~~rdvfLD 184 (250)
T COG2861 152 --LYFLDSGTIANSLAGKIAKEIGVPVIKRDVFLD 184 (250)
T ss_pred --eEEEcccccccchhhhhHhhcCCceeeeeeeec
Confidence 1112221111 123357788888877665543
No 140
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.74 E-value=2.9e+02 Score=23.01 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=12.1
Q ss_pred hHHHHHHhcCCeEEec
Q 025396 128 DLLPYLKSKGVGVISA 143 (253)
Q Consensus 128 ~~~~~~~~~gi~v~~~ 143 (253)
..++.|++.|..++.+
T Consensus 103 ~~i~~a~~lG~~~i~~ 118 (283)
T PRK13209 103 KAIQLAQDLGIRVIQL 118 (283)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 5677888888887764
No 141
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=32.61 E-value=2.8e+02 Score=23.09 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=18.9
Q ss_pred HHHhhhcCCCcceEeeCCCCHHHHHHHHHHH
Q 025396 188 AMQYSLSNKDISSVLVGMNSVKQVQENVTAA 218 (253)
Q Consensus 188 al~~~l~~~~v~~vl~g~~~~~~l~en~~a~ 218 (253)
.|+.+.+.+-...+=.|+++.+++.+.++.+
T Consensus 105 lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~ 135 (241)
T PF03102_consen 105 LLEYIAKTGKPVILSTGMSTLEEIERAVEVL 135 (241)
T ss_dssp HHHHHHTT-S-EEEE-TT--HHHHHHHHHHH
T ss_pred HHHHHHHhCCcEEEECCCCCHHHHHHHHHHH
Confidence 4666665443323667999999999999987
No 142
>PRK05443 polyphosphate kinase; Provisional
Probab=32.35 E-value=1.7e+02 Score=28.62 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=54.0
Q ss_pred EEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCC----cHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHH
Q 025396 55 LQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGL----PLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLL 130 (253)
Q Consensus 55 ~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 130 (253)
++||.|= ..+..+.+.++++..+-.|.+|-++-+ +...+..++++...|.--.+++....-+.........
T Consensus 341 iLLh~PY-----~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~ 415 (691)
T PRK05443 341 ILLHHPY-----ESFDPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLVELKARFDEEANIRWA 415 (691)
T ss_pred EEEECCc-----cCchHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHH
Confidence 5677771 235778899999999999999999987 5666777777665433223444444433332223556
Q ss_pred HHHHhcCCeEE
Q 025396 131 PYLKSKGVGVI 141 (253)
Q Consensus 131 ~~~~~~gi~v~ 141 (253)
..+.+.|+.|+
T Consensus 416 ~~L~~aGv~V~ 426 (691)
T PRK05443 416 RRLEEAGVHVV 426 (691)
T ss_pred HHHHHcCCEEE
Confidence 66778898883
No 143
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=32.33 E-value=3.3e+02 Score=26.14 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHH
Q 025396 31 FSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYV 101 (253)
Q Consensus 31 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~ 101 (253)
-......++|.+.|+.||.++ |--..+. ...++.-.+++++|+++|+. + +|..+.+++.+.
T Consensus 98 R~~~e~~d~IleDL~WLGl~w-De~~~~Q------Sdr~d~y~e~a~~Li~~G~A--Y-~c~cs~eei~~~ 158 (601)
T PTZ00402 98 KEKEHFEQAILDDLATLGVSW-DVGPTYS------SDYMDLMYEKAEELIKKGLA--Y-CDKTPREEMQKC 158 (601)
T ss_pred ccCHHHHHHHHHHHHHCCCCC-CCceeec------cccHHHHHHHHHHHHHcCCE--E-EecCCHHHHHHH
Confidence 345678889999999999973 3101111 13467888999999999994 4 888888888665
No 144
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=32.21 E-value=71 Score=28.91 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcC--CeEEecccccc
Q 025396 71 ETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKG--VGVISASPLAM 148 (253)
Q Consensus 71 ~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~g--i~v~~~~pl~~ 148 (253)
.+++++.+..++++ ++...+.+.+-..++.--...++|.. +|..+.. +.++.+++.+ ++++++ +|
T Consensus 122 PiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmT--iHcGi~~----~~~~~~~~~~R~~giVSR---GG 188 (431)
T PRK13352 122 PIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMT--IHCGVTR----ETLERLKKSGRIMGIVSR---GG 188 (431)
T ss_pred hHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEE--EccchhH----HHHHHHHhcCCccCeecC---CH
Confidence 46788888766655 77888898888887743333688886 4433333 5677777654 444433 22
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 025396 149 GLLTDNGPPEWHPASPELKSACKAAAARCKEKGKN 183 (253)
Q Consensus 149 G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 183 (253)
.+++. ..-. ......++.-++.+-+|+++|++|
T Consensus 189 s~~~~-WM~~-n~~ENPlye~fD~lLeI~~~yDVt 221 (431)
T PRK13352 189 SFLAA-WMLH-NNKENPLYEHFDYLLEILKEYDVT 221 (431)
T ss_pred HHHHH-HHHH-cCCcCchHHHHHHHHHHHHHhCee
Confidence 22221 1000 011224566778889999999875
No 145
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=32.13 E-value=72 Score=23.52 Aligned_cols=61 Identities=25% Similarity=0.212 Sum_probs=36.2
Q ss_pred ccEEEecCC---cHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccc
Q 025396 85 IRFIGITGL---PLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAM 148 (253)
Q Consensus 85 i~~iGvsn~---~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 148 (253)
|.-|-+++. +++.+..+++..+ .+.++.+--.... .....++.+.|++.||++-.++.=+.
T Consensus 44 v~~W~v~~~~~Lt~e~f~~vl~~a~--~~EilliGTG~~~-rf~p~~l~aal~~~gIsve~Mst~AA 107 (127)
T COG3737 44 VCDWEVATLSDLTPEDFERVLAEAP--DVEILLIGTGARL-RFPPPKLRAALKAAGISVEPMSTGAA 107 (127)
T ss_pred cccccccChhhCCHHHHHHHHhcCC--CceEEEEecCccc-cCCCHHHHHHHHHcCCccccccchhh
Confidence 444444443 5677777777653 3444443222222 12225899999999999998875543
No 146
>PF13289 SIR2_2: SIR2-like domain
Probab=32.03 E-value=78 Score=23.18 Aligned_cols=89 Identities=15% Similarity=0.071 Sum_probs=51.1
Q ss_pred hhCCCcccEEEeccCC-C-C--------Chhh---hHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHH----hCCCC
Q 025396 46 RLQLDYVDILQCHDIE-F-G--------SLDQ---IVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLD----RMPPG 108 (253)
Q Consensus 46 ~L~~d~iDl~~lH~~~-~-~--------~~~~---~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~----~~~~~ 108 (253)
......+-++-||+-- + + ++.. .....++.+..+.....+-.||.|-.++ .+..++. ..+..
T Consensus 37 ~~~~~~~~i~klHG~~~~~~~~~vlt~~~y~~~~~~~~~~~~~l~~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~~ 115 (143)
T PF13289_consen 37 RSSSGRPPIYKLHGSLDWDPESIVLTEDDYEEYYSSNPWFPNFLRSLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGKS 115 (143)
T ss_pred cccCCCcEEEEEecCcccCCCCEEEcHHHHHHHhhhHHHHHHHHHHHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccCC
Confidence 3455667888888853 1 1 1111 1245778888888999999999996554 4444443 22210
Q ss_pred CcceEEecCCCCCCccc-HhhHHHHHHhcCCeEE
Q 025396 109 AVDVILSYCHYSINDST-LEDLLPYLKSKGVGVI 141 (253)
Q Consensus 109 ~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~ 141 (253)
...... +.... .+....+.++.||.++
T Consensus 116 ~~~~~~------v~~~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 116 RPRHYI------VIPDPDDENEREFLEKYGIEVI 143 (143)
T ss_pred CccEEE------EEcCCchHHHHHHHHHcCCEEC
Confidence 111111 11111 1356778889998874
No 147
>PLN02363 phosphoribosylanthranilate isomerase
Probab=32.02 E-value=1.8e+02 Score=24.47 Aligned_cols=66 Identities=9% Similarity=0.132 Sum_probs=41.7
Q ss_pred HhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEec-CCcHHHHHHHHHhCCCCCcceEEecCCC
Q 025396 45 ARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGIT-GLPLEIFTYVLDRMPPGAVDVILSYCHY 119 (253)
Q Consensus 45 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvs-n~~~~~~~~~~~~~~~~~~~~~~~q~~~ 119 (253)
.++|.|++-+.+. +..+. ....+..+.+.+......+..+||. |-+++.+.++++.. .++++ |+|-
T Consensus 64 ~~~GaD~iGfIf~--~~SpR--~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~---~ld~V--QLHG 130 (256)
T PLN02363 64 VEAGADFIGMILW--PKSKR--SISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSS---DLELV--QLHG 130 (256)
T ss_pred HHcCCCEEEEecC--CCCCC--cCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhc---CCCEE--EECC
Confidence 4589999998643 32221 1124555555555444347789996 67999999998876 45555 5664
No 148
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=31.91 E-value=1.9e+02 Score=25.24 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHcCCcc-EEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecc
Q 025396 71 ETIPALQKQKEAGKIR-FIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 71 ~~~~aL~~l~~~G~i~-~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 144 (253)
+.++.+..+.+...+- +.|=|.++...+.++++.. .+++++.-+...=--.+..++...|+++|+.++.+.
T Consensus 209 ~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~---a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 209 DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR---AVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC---CCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 3467777888776666 6677778888888888853 455554222221111223478999999999988653
No 149
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=31.75 E-value=2.2e+02 Score=25.55 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHcCCcc-EEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccc
Q 025396 71 ETIPALQKQKEAGKIR-FIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASP 145 (253)
Q Consensus 71 ~~~~aL~~l~~~G~i~-~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~p 145 (253)
+.++.+.+|.+...+. +.|=|.++...+..+++.. .+++++.-+...=--.+..++.++|+.+|+.++.+..
T Consensus 244 ~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~---a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~ 316 (404)
T PRK15072 244 ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQ---LIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGP 316 (404)
T ss_pred cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcC---CCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccC
Confidence 3567888888876665 6777778999999998863 4566543222211112234789999999999997654
No 150
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=31.59 E-value=1.7e+02 Score=20.96 Aligned_cols=53 Identities=25% Similarity=0.189 Sum_probs=33.0
Q ss_pred ecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccccc
Q 025396 90 ITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLA 147 (253)
Q Consensus 90 vsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 147 (253)
++..+.+.+..++.. .++++.+-..-+.... .+++.++++++||++..+.+-+
T Consensus 37 ~~~l~~e~l~~l~~~----~peiliiGTG~~~~~~-~~~~~~~l~~~gi~vE~m~T~~ 89 (109)
T cd05560 37 FEDLTAAHFEALLAL----QPEVILLGTGERQRFP-PPALLAPLLARGIGVEVMDTQA 89 (109)
T ss_pred cccCCHHHHHHHHhc----CCCEEEEecCCCCCcC-CHHHHHHHHHcCCeEEEECHHH
Confidence 334467777777664 3455543333332222 2588899999999999876543
No 151
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=31.53 E-value=88 Score=26.68 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=16.9
Q ss_pred cHhhHHHHHHhcCCeEEeccccc
Q 025396 125 TLEDLLPYLKSKGVGVISASPLA 147 (253)
Q Consensus 125 ~~~~~~~~~~~~gi~v~~~~pl~ 147 (253)
..+++++|++++||+|+.|.--.
T Consensus 74 dl~elv~Ya~~KgVgi~lw~~~~ 96 (273)
T PF10566_consen 74 DLPELVDYAKEKGVGIWLWYHSE 96 (273)
T ss_dssp -HHHHHHHHHHTT-EEEEEEECC
T ss_pred CHHHHHHHHHHcCCCEEEEEeCC
Confidence 34689999999999998766553
No 152
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=31.20 E-value=94 Score=23.22 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHcCCccEEEecCC
Q 025396 71 ETIPALQKQKEAGKIRFIGITGL 93 (253)
Q Consensus 71 ~~~~aL~~l~~~G~i~~iGvsn~ 93 (253)
..+..|.+..+.|+|..+=|...
T Consensus 55 p~l~~ll~~~~~g~vd~vvv~~l 77 (140)
T cd03770 55 PGFNRMIEDIEAGKIDIVIVKDM 77 (140)
T ss_pred HHHHHHHHHHHcCCCCEEEEecc
Confidence 34555555556676666655543
No 153
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=31.12 E-value=3.3e+02 Score=23.31 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=59.0
Q ss_pred HHhhCCCcccEEEecc-CCCCChhhhHHhH-----HHHHHHHHHcCCccEEEecCCcHH----HHHHHHHhCCCCCcceE
Q 025396 44 LARLQLDYVDILQCHD-IEFGSLDQIVNET-----IPALQKQKEAGKIRFIGITGLPLE----IFTYVLDRMPPGAVDVI 113 (253)
Q Consensus 44 L~~L~~d~iDl~~lH~-~~~~~~~~~~~~~-----~~aL~~l~~~G~i~~iGvsn~~~~----~~~~~~~~~~~~~~~~~ 113 (253)
++-++-.++|+..+.. ... ....+. -+.+-+...+--=|++|+.+.++. ...++-.... ...++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~----~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~--~~gf~ 128 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEV----AIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVR--ELGFV 128 (293)
T ss_pred HhhhcccccceEEeeccccc----cchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHH--hcCce
Confidence 7778888999888884 111 111111 357888888888899999998554 2223322221 12334
Q ss_pred EecCCCCC-----CcccHhhHHHHHHhcCCeEEeccccc
Q 025396 114 LSYCHYSI-----NDSTLEDLLPYLKSKGVGVISASPLA 147 (253)
Q Consensus 114 ~~q~~~~~-----~~~~~~~~~~~~~~~gi~v~~~~pl~ 147 (253)
..+++... .++....+++.|.++|+.|..+....
T Consensus 129 g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 129 GVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred EEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 43443222 22223579999999999998755443
No 154
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=31.09 E-value=1.6e+02 Score=24.82 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhCCCHHHHHH
Q 025396 170 CKAAAARCKEKGKNISKIAM 189 (253)
Q Consensus 170 ~~~l~~la~~~~~s~~q~al 189 (253)
...+..+|+-.|+++.+++-
T Consensus 225 ~~v~~~iAelk~~~~eeva~ 244 (256)
T COG0084 225 RHVAEKLAELKGISAEEVAE 244 (256)
T ss_pred HHHHHHHHHHhCCCHHHHHH
Confidence 34567788888999888764
No 155
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=31.04 E-value=1.7e+02 Score=21.31 Aligned_cols=54 Identities=22% Similarity=0.180 Sum_probs=34.4
Q ss_pred EEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccc
Q 025396 88 IGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASP 145 (253)
Q Consensus 88 iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~p 145 (253)
......+++.+.++++. .++++.+--.....-.-.+++.+.+++.||+++.+.+
T Consensus 41 ~~~~~l~~~~l~~ll~~----~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T 94 (117)
T cd05126 41 GTSHGLQPEELEELLEE----GVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPT 94 (117)
T ss_pred CCcccCCHHHHHHHHhc----CCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcCh
Confidence 34445678888888875 3555554333332111125788899999999998653
No 156
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=30.97 E-value=16 Score=32.38 Aligned_cols=124 Identities=12% Similarity=0.026 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccH--------hhHHHHHHhcCCeEEeccc
Q 025396 74 PALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTL--------EDLLPYLKSKGVGVISASP 145 (253)
Q Consensus 74 ~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~--------~~~~~~~~~~gi~v~~~~p 145 (253)
+.+.+|-++|.--.+=.|+.+.+.+..+++... .++-+ ....|...+.. .+.=.+.++.||.+.||-|
T Consensus 102 ~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~--~~~~i--~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~ 177 (357)
T PF05913_consen 102 EEIAKLSKNGIKIELNASTITEEELDELIKYGA--NFSNI--IACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIP 177 (357)
T ss_dssp HHHHHHTTT-SEEEEETTT--CCHHHHHCCTT----GGGE--EEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHHHHHhCCCEEEEECCCCChHHHHHHHHhcC--CHHHe--EEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEec
Confidence 344455555666667777777777777766431 11111 11122221111 1344578899999999887
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCC--CHHHHHHHHHH
Q 025396 146 LAMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMN--SVKQVQENVTA 217 (253)
Q Consensus 146 l~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~--~~~~l~en~~a 217 (253)
-..+ ..++ ....-|.- ++|.--+..++.+.+...+.|+.|++|=. +.+++++....
T Consensus 178 g~~~-~rGP-l~~GLPTl--------------E~hR~~~p~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 178 GDEN-KRGP-LYEGLPTL--------------EKHRNLPPYAAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp -SSS--BTT-T-S--BSB--------------GGGTTS-HHHHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred CCCc-ccCC-ccCCCCcc--------------HHHcCCCHHHHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 6532 2221 11111111 13433455677888888898999999977 45555554443
No 157
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=30.89 E-value=2.2e+02 Score=21.03 Aligned_cols=71 Identities=18% Similarity=0.157 Sum_probs=42.6
Q ss_pred hHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCC-CcceEEecCCCCCCcccHhhHHHHHHhcCCe
Q 025396 68 IVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPG-AVDVILSYCHYSINDSTLEDLLPYLKSKGVG 139 (253)
Q Consensus 68 ~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~ 139 (253)
+..++.+.|+.|++.| ++-+=+||.+.+.+...++..+.. .++.+...-......+...-+...+++.|+.
T Consensus 78 ~~~~~~~~L~~l~~~~-~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~ 149 (176)
T PF13419_consen 78 PYPGVRELLERLKAKG-IPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIP 149 (176)
T ss_dssp ESTTHHHHHHHHHHTT-SEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSS
T ss_pred hhhhhhhhhhhccccc-ceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCC
Confidence 3567888999997675 566667888888888888766431 2444443333333333333344555555543
No 158
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=30.87 E-value=2.3e+02 Score=26.10 Aligned_cols=60 Identities=20% Similarity=0.157 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHH
Q 025396 31 FSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYV 101 (253)
Q Consensus 31 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~ 101 (253)
.+.+...+.+.++|+.||++ .|-++ ..........++++.|+++|++ |...|+ .+++.+.
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~-~De~y-------~QSer~~~y~~~~e~L~e~G~A-Y~C~Ct--~eel~~~ 107 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGIN-WDRTF-------RQSDRFDRYDEAAEKLKAAGRL-YPCYET--PEELELK 107 (445)
T ss_pred cchHHHHHHHHHHHHHcCCC-CCccc-------cHHHHHHHHHHHHHHHHHCCCE-EEecCc--hHHHHHH
Confidence 45678899999999999997 57431 2223355678889999999995 554444 5555443
No 159
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=30.84 E-value=3.4e+02 Score=24.83 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHcC-CccEEEecCCcHHHHHHHHHhCCCCCcce-EEecCCCCCCcccHhhHHHHHHhcCCeEEecccccc
Q 025396 71 ETIPALQKQKEAG-KIRFIGITGLPLEIFTYVLDRMPPGAVDV-ILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAM 148 (253)
Q Consensus 71 ~~~~aL~~l~~~G-~i~~iGvsn~~~~~~~~~~~~~~~~~~~~-~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 148 (253)
-+.+..+.++++| .+.++++.+-....+..+.+.+.+...-+ ++.=.+..-.-...+++...|++.||.|++-..-+-
T Consensus 143 ~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQav 222 (428)
T KOG1549|consen 143 CVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAV 222 (428)
T ss_pred chhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhc
Confidence 3566677777777 46778887654444444444443312111 221122222234457899999999998876555444
Q ss_pred c
Q 025396 149 G 149 (253)
Q Consensus 149 G 149 (253)
|
T Consensus 223 G 223 (428)
T KOG1549|consen 223 G 223 (428)
T ss_pred C
Confidence 4
No 160
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=30.71 E-value=1e+02 Score=27.61 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=11.7
Q ss_pred hhHHHHHHhcCCeEEe
Q 025396 127 EDLLPYLKSKGVGVIS 142 (253)
Q Consensus 127 ~~~~~~~~~~gi~v~~ 142 (253)
..+.+.|++||+.|++
T Consensus 181 ~~i~elc~kh~v~VIS 196 (388)
T COG1168 181 RKIAELCLRHGVRVIS 196 (388)
T ss_pred HHHHHHHHHcCCEEEe
Confidence 3677778888888773
No 161
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.61 E-value=2.6e+02 Score=22.80 Aligned_cols=88 Identities=14% Similarity=0.175 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCC-cHHHHHHHHHhCCCCCc
Q 025396 32 SAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGL-PLEIFTYVLDRMPPGAV 110 (253)
Q Consensus 32 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~-~~~~~~~~~~~~~~~~~ 110 (253)
+.+...+ +-+.|..-|.+.+.+=+ - ..+..+.++.++++..=..||..+- +.++++.+++. .-
T Consensus 25 ~~~~a~~-i~~al~~~Gi~~iEitl-~----------~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~a----GA 88 (212)
T PRK05718 25 KLEDAVP-LAKALVAGGLPVLEVTL-R----------TPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEA----GA 88 (212)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEec-C----------CccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHc----CC
Confidence 4544443 34455556666565541 1 2345566666666543367898884 78888888886 45
Q ss_pred ceEEecCCCCCCcccHhhHHHHHHhcCCeEEe
Q 025396 111 DVILSYCHYSINDSTLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 111 ~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~ 142 (253)
+|++.. ++. ++++++|+++++.++.
T Consensus 89 ~FivsP---~~~----~~vi~~a~~~~i~~iP 113 (212)
T PRK05718 89 QFIVSP---GLT----PPLLKAAQEGPIPLIP 113 (212)
T ss_pred CEEECC---CCC----HHHHHHHHHcCCCEeC
Confidence 666422 222 3899999999999983
No 162
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=30.57 E-value=51 Score=27.48 Aligned_cols=27 Identities=4% Similarity=0.127 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhhh
Q 025396 167 KSACKAAAARCKEKGKNISKIAMQYSL 193 (253)
Q Consensus 167 ~~~~~~l~~la~~~~~s~~q~al~~~l 193 (253)
.+.++++..||..|++++.+++.+|--
T Consensus 9 ~~vl~kl~slc~~~~ls~edL~~kWea 35 (253)
T PF08418_consen 9 PDVLEKLQSLCRLYNLSAEDLFYKWEA 35 (253)
T ss_dssp HHHHHHHHTHHHHST--HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456788899999999999999999853
No 163
>PRK14017 galactonate dehydratase; Provisional
Probab=30.22 E-value=2.2e+02 Score=25.36 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccc
Q 025396 72 TIPALQKQKEAGKIR-FIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASP 145 (253)
Q Consensus 72 ~~~aL~~l~~~G~i~-~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~p 145 (253)
.++.+.++.+...+- +.|=|.++...+..+++.. .+++++.-....---.+..++.++|+++||.++.++.
T Consensus 216 d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~---a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 216 NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG---GVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC---CCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 467788888776665 6667778888888888863 4555432222111112234789999999999997654
No 164
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=29.95 E-value=74 Score=25.95 Aligned_cols=38 Identities=24% Similarity=0.136 Sum_probs=24.1
Q ss_pred CCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCC
Q 025396 49 LDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGL 93 (253)
Q Consensus 49 ~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~ 93 (253)
.-.+|++|||..+. .+.++.|.+...-.-++++.++.-
T Consensus 73 ~~~ld~VQlHG~e~-------~~~~~~l~~~~~~~v~kai~v~~~ 110 (208)
T COG0135 73 ELGLDAVQLHGDED-------PEYIDQLKEELGVPVIKAISVSEE 110 (208)
T ss_pred hcCCCEEEECCCCC-------HHHHHHHHhhcCCceEEEEEeCCc
Confidence 34689999999731 233334433334568888888864
No 165
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=29.92 E-value=3.7e+02 Score=23.32 Aligned_cols=78 Identities=9% Similarity=0.091 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHHcCCccEEEecC---------CcHHHHHHHHHhCCCCCcceEEecCC-CCCCcccHhhHHHHHHhcCCe
Q 025396 70 NETIPALQKQKEAGKIRFIGITG---------LPLEIFTYVLDRMPPGAVDVILSYCH-YSINDSTLEDLLPYLKSKGVG 139 (253)
Q Consensus 70 ~~~~~aL~~l~~~G~i~~iGvsn---------~~~~~~~~~~~~~~~~~~~~~~~q~~-~~~~~~~~~~~~~~~~~~gi~ 139 (253)
....+.++.+++-|.+..+.+.+ .+.+.+..+.+. +. .+ .+....+ ..-......+.++.+++.|+.
T Consensus 153 ~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~-g~-~v-~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 153 RRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS-GK-TV-YVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc-CC-cE-EEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 45666677777788777555543 234444444333 11 11 2332222 111222234678889999999
Q ss_pred EEecccccccc
Q 025396 140 VISASPLAMGL 150 (253)
Q Consensus 140 v~~~~pl~~G~ 150 (253)
+...+++..|.
T Consensus 230 v~~q~vLl~gv 240 (321)
T TIGR03822 230 MVSQSVLLRGV 240 (321)
T ss_pred EEEEeeEeCCC
Confidence 99988888764
No 166
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=29.88 E-value=3.4e+02 Score=22.89 Aligned_cols=160 Identities=9% Similarity=0.056 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhhCCCcccEEEeccCCCCCh-hhhHHhHHHHHHHHHHcCCccEEEecCCcH-HHHHHHHHh-CCCCC
Q 025396 33 AERVTRSIDESLARLQLDYVDILQCHDIEFGSL-DQIVNETIPALQKQKEAGKIRFIGITGLPL-EIFTYVLDR-MPPGA 109 (253)
Q Consensus 33 ~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~-~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~-~~~~~~~~~-~~~~~ 109 (253)
.+.+.+-....++.++ +++..|=++..-+... ...+....+.++.+++.|..-..=+--++. .....+.+. .....
T Consensus 36 ~~~~~~f~~~ii~~l~-~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIpnTv~~~a~a~~~~~g 114 (261)
T TIGR02127 36 AAGLQAFCLRIIDATA-EYAAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLADVKRGDIGSTASAYAKAWLGHLH 114 (261)
T ss_pred HHHHHHHHHHHHHhcC-CcceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccChHHHHHHHHHHHHhhcC
Confidence 3455566667777776 5777777666421111 011223344445566666543333333433 233333332 11113
Q ss_pred cceEEecCCCCCCcccHhhHHHHHHhcC--CeEEecccc-cccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHH
Q 025396 110 VDVILSYCHYSINDSTLEDLLPYLKSKG--VGVISASPL-AMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGKNISK 186 (253)
Q Consensus 110 ~~~~~~q~~~~~~~~~~~~~~~~~~~~g--i~v~~~~pl-~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q 186 (253)
++.+. +|...-.......++.++++| +.|++-.+. ++.- ++++....|.+..+
T Consensus 115 ~D~vT--vh~~~G~d~l~~~~~~~~~~~~~v~VlvlTSnp~~~~----------------------lq~~~~~~~~~~~~ 170 (261)
T TIGR02127 115 ADALT--VSPYLGLDSLRPFLEYARANGAGIFVLVKTSNPGGAD----------------------LQDLRVSDGRTVYE 170 (261)
T ss_pred CCEEE--ECCcCCHHHHHHHHHHHhhcCCEEEEEEeCCCCCHHH----------------------HhhhhccCCCCHHH
Confidence 45554 444444444445666666654 444443333 2111 12211122234444
Q ss_pred HHHHhhhcCC------CcceEeeCCCCHHHHHHHHHH
Q 025396 187 IAMQYSLSNK------DISSVLVGMNSVKQVQENVTA 217 (253)
Q Consensus 187 ~al~~~l~~~------~v~~vl~g~~~~~~l~en~~a 217 (253)
..++++..-. ..+.+++|+++++++...-+.
T Consensus 171 ~V~~~a~~~~~~~~~~g~~GvV~gAT~p~e~~~iR~~ 207 (261)
T TIGR02127 171 EVAELAGELNESPGDCSSVGAVVGATSPGDLLRLRIE 207 (261)
T ss_pred HHHHHHHHhccccCcCCceEEEECCCCHHHHHHHHHh
Confidence 4444444321 356789999999988876554
No 167
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=29.63 E-value=1.4e+02 Score=25.56 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEE
Q 025396 72 TIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVI 141 (253)
Q Consensus 72 ~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~ 141 (253)
.+.-++++.+.+.|..+=|++-+..+...+...+..+. .++.+=+....-.+.+++++.|+++|+.++
T Consensus 55 ~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGk--hVl~EKPla~t~~ea~~l~~~a~~~~~~l~ 122 (342)
T COG0673 55 AYTDLEELLADPDIDAVYIATPNALHAELALAALEAGK--HVLCEKPLALTLEEAEELVELARKAGVKLM 122 (342)
T ss_pred ccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCC--EEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 34446677777766666666654444333333332222 233344444444444567777777766655
No 168
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=29.60 E-value=1.1e+02 Score=26.28 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhCCCcc--cEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccE
Q 025396 34 ERVTRSIDESLARLQLDYV--DILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRF 87 (253)
Q Consensus 34 ~~i~~~l~~sL~~L~~d~i--Dl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~ 87 (253)
+...+.+.+.+++||+.+- ..+.=+.+ .....+++.+..|.++|.|-.
T Consensus 82 ~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~------~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 82 EEMSGEHKEDFRRLGISYDWSDEYITTEP------EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHhCccccCCCCeECCCH------HHHHHHHHHHHHHHHCCCEEe
Confidence 5567778889999999633 23333332 336789999999999999866
No 169
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=29.55 E-value=2.6e+02 Score=22.92 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhhhc
Q 025396 166 LKSACKAAAARCKEKGKNISKIAMQYSLS 194 (253)
Q Consensus 166 ~~~~~~~l~~la~~~~~s~~q~al~~~l~ 194 (253)
+....+.=..+|+++|++.-|+-|.--++
T Consensus 185 F~~L~~~r~~ic~~lg~~~dq~eLSMGMS 213 (244)
T KOG3157|consen 185 FQVLVKLRESICKKLGIPADQVELSMGMS 213 (244)
T ss_pred HHHHHHHHHHHHHHhCCChHHhhhhcccc
Confidence 33333434688999999988877765444
No 170
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=29.43 E-value=1.4e+02 Score=25.35 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhH-HhHHHHHHHHHHcCCccEEEecCC--cHHHHHHHHHhC
Q 025396 31 FSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIV-NETIPALQKQKEAGKIRFIGITGL--PLEIFTYVLDRM 105 (253)
Q Consensus 31 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~-~~~~~aL~~l~~~G~i~~iGvsn~--~~~~~~~~~~~~ 105 (253)
.+.+.+++-+.++.++++..-++.+.+...........+ -+-.+.++++.++|+ ..|-+++| +.|.+..++...
T Consensus 59 ~s~~e~~~l~~~~~~~~~~~~~E~~~~~~~~~~~~~~~v~i~g~e~l~~a~~~g~-gvI~~t~H~GnwE~~~~~l~~~ 135 (298)
T PRK08419 59 KSQEEKKRIIKKCYENFAFFGLDFIRNQNTTKEEILNKVTFINEENLLDALKKKR-PIIVTTAHYGYWELFSLALAAY 135 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhhcCcEEEECHHHHHHHHHcCC-CEEEEeeCccHHHHHHHHHHhc
Confidence 688899999999999999888888777653211111111 123567777888877 77788887 445444444443
No 171
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=29.43 E-value=3.2e+02 Score=22.38 Aligned_cols=47 Identities=11% Similarity=0.064 Sum_probs=24.2
Q ss_pred HHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 025396 187 IAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELALFGKDQEALTE 233 (253)
Q Consensus 187 ~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~ 233 (253)
-.++.+...+...++=.++.++.++..--.+..-+..+.++.++...
T Consensus 158 ~~~~~~~~~g~piiisSdAh~~~~l~~~~~~~~l~~~~Gl~~~~~~~ 204 (237)
T PRK00912 158 DNLALARKYDFPLVLTSGAMSCYDLRSPREMIALAELFGMEEDEALK 204 (237)
T ss_pred HHHHHHHhcCCCEEEeCCCCcccccCCHHHHHHHHHHcCCCHHHHHH
Confidence 34555554443323445666777775333332333344677777655
No 172
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.38 E-value=3.3e+02 Score=22.59 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=11.1
Q ss_pred HHHhhCCCcccEEE
Q 025396 43 SLARLQLDYVDILQ 56 (253)
Q Consensus 43 sL~~L~~d~iDl~~ 56 (253)
..+.+|.+++++..
T Consensus 24 ~~~~~G~~~iEl~~ 37 (284)
T PRK13210 24 FAKELGFDFVEMSV 37 (284)
T ss_pred HHHHcCCCeEEEec
Confidence 45689999999863
No 173
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.31 E-value=3.9e+02 Score=26.14 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHc--CCccEEEecCCcHHHHHHHHHhC
Q 025396 32 SAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEA--GKIRFIGITGLPLEIFTYVLDRM 105 (253)
Q Consensus 32 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~--G~i~~iGvsn~~~~~~~~~~~~~ 105 (253)
.-+.+++-++.....-.....-+|+|+..+ ......+.+|.+..++ +.+.+|.++|.....+..+.+.+
T Consensus 105 gVDdIReLie~~~~~P~~gr~KViIIDEah-----~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRC 175 (700)
T PRK12323 105 GVDEMAQLLDKAVYAPTAGRFKVYMIDEVH-----MLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 175 (700)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEEChH-----hcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHH
Confidence 455666666555444344556789999874 2235677788887777 89999999997655555555543
No 174
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=29.27 E-value=1.4e+02 Score=26.23 Aligned_cols=85 Identities=13% Similarity=0.233 Sum_probs=45.9
Q ss_pred HHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHH-cCCccEEEecCCcHHHHHHHHHh-CCCCCcceEEecCC
Q 025396 41 DESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKE-AGKIRFIGITGLPLEIFTYVLDR-MPPGAVDVILSYCH 118 (253)
Q Consensus 41 ~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~-~G~i~~iGvsn~~~~~~~~~~~~-~~~~~~~~~~~q~~ 118 (253)
+.-|+..|.++|--+++.+-.+...+..+.+.|+.|.+-++ .++ .|++.++.+.+.. +.. .
T Consensus 125 d~~Lr~~ginRIgnv~ip~e~y~~~E~~i~~il~~~~~~q~~~~~-------~~s~~e~i~~lGk~i~~----------~ 187 (334)
T PRK03971 125 GAELREKGINRIGNIFVPNDRYIEFEEYMYEFFEELLAKQREEGK-------IITASEFCYELGRFMDE----------K 187 (334)
T ss_pred HHHHHHcCCCccceeeeChHHHHHHHHHHHHHHHHHHHhhhccCC-------cccHHHHHHHHHHHHhh----------h
Confidence 56677777877777777653222222333444554433322 232 2667766555543 110 0
Q ss_pred CCCCcccHhhHHHHHHhcCCeEEecc
Q 025396 119 YSINDSTLEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~gi~v~~~~ 144 (253)
+ .......++.+|.++||.|.+=+
T Consensus 188 ~--~~~~e~Sil~~Ayk~~VPIf~Pa 211 (334)
T PRK03971 188 L--GKEKEKSILYWAYKNNIPIFCPA 211 (334)
T ss_pred c--cCCccchHHHHHHHcCCCEEcCC
Confidence 1 01111479999999999998533
No 175
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=29.05 E-value=2.4e+02 Score=23.41 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=37.1
Q ss_pred HHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCC--cceEEecCCCCCCcccHhhHHHHHHhcCC
Q 025396 69 VNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGA--VDVILSYCHYSINDSTLEDLLPYLKSKGV 138 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~gi 138 (253)
..++.+.|+.|+++|..-+| +||.....+..+++..+... ++.+..--......+.++-+...+++.|+
T Consensus 103 ~pg~~elL~~L~~~g~~l~I-~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~ 173 (267)
T PRK13478 103 IPGVLEVIAALRARGIKIGS-TTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGV 173 (267)
T ss_pred CCCHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCC
Confidence 46788889999999865555 56666666666655332111 23332111111122333346666777665
No 176
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.55 E-value=2.6e+02 Score=21.06 Aligned_cols=84 Identities=13% Similarity=0.079 Sum_probs=56.5
Q ss_pred CCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEec
Q 025396 12 PRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGIT 91 (253)
Q Consensus 12 ~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvs 91 (253)
+-+++.|+-=.+. .+.+.+.....++.+++++++..+|..--. ....+.+.=+...++++-+.=.-|+.-
T Consensus 32 d~~e~LiVrGmsR----ed~d~Dd~~~el~s~ie~~~v~~ld~es~E------g~elI~e~De~vr~~vei~te~~i~~d 101 (156)
T COG4077 32 DTDEMLIVRGMSR----EDMDADDEEVELYSSIEDYLVKKLDKESFE------GVELIKEIDEFVRRIVEILTENPIYPD 101 (156)
T ss_pred CccceEEEecccc----cccCcchHHHHHHHHHHHhhHHHhCccCHH------HHHHHHHHHHHHHHHHHhhhcCCCccC
Confidence 3455555544443 345677888999999999999998854222 223344454555666677777778888
Q ss_pred CCcHHHHHHHHHhC
Q 025396 92 GLPLEIFTYVLDRM 105 (253)
Q Consensus 92 n~~~~~~~~~~~~~ 105 (253)
.+..+.+.+-++.+
T Consensus 102 ~~GfeRlKeslE~~ 115 (156)
T COG4077 102 TFGFERLKESLEMI 115 (156)
T ss_pred cchHHHHHHHHHHc
Confidence 88888888877765
No 177
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=28.32 E-value=1.2e+02 Score=25.83 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=41.0
Q ss_pred hhHHHHHHhcCCeEEecc----cccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEe
Q 025396 127 EDLLPYLKSKGVGVISAS----PLAMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVL 202 (253)
Q Consensus 127 ~~~~~~~~~~gi~v~~~~----pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl 202 (253)
..++.|+.++||.+.-.+ ||+. .. .......+.+...+.+++++++++|+ |=.++-+.- ++
T Consensus 48 ~~~L~~n~~~~I~~yRisS~liP~as-----hp-~~~~~~~~~~~~~l~~iG~~~~~~~i-------Rls~HP~qf--~v 112 (275)
T PF03851_consen 48 LRILEYNIAHGIRFYRISSDLIPLAS-----HP-EVGWDWEEEFAEELAEIGDLAKENGI-------RLSMHPDQF--TV 112 (275)
T ss_dssp HHHHHHHHHTT--EEE--TTSSTTTT-----ST-T--S-HHHHHHHHHHHHHHHHHHTT--------EEEE---TT----
T ss_pred HHHHHHHHHcCCCEEecCcccCCCCC-----Cc-ccccchHHHHHHHHHHHHHHHHHcCC-------eEEecCCcc--ee
Confidence 478999999999998544 2322 11 11111124566777778888888864 333343334 67
Q ss_pred eCCCCHHHHHHHHHHH
Q 025396 203 VGMNSVKQVQENVTAA 218 (253)
Q Consensus 203 ~g~~~~~~l~en~~a~ 218 (253)
.++.+++-++..++-+
T Consensus 113 LnSp~~~Vv~~si~~L 128 (275)
T PF03851_consen 113 LNSPREEVVENSIRDL 128 (275)
T ss_dssp TT-SSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 8888888877766655
No 178
>PRK07328 histidinol-phosphatase; Provisional
Probab=28.25 E-value=3.6e+02 Score=22.58 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhCCCcccEEEeccCCCC--Chh--------hhHHhH----HHHHHHHHHcCCccEEEec
Q 025396 37 TRSIDESLARLQLDYVDILQCHDIEFG--SLD--------QIVNET----IPALQKQKEAGKIRFIGIT 91 (253)
Q Consensus 37 ~~~l~~sL~~L~~d~iDl~~lH~~~~~--~~~--------~~~~~~----~~aL~~l~~~G~i~~iGvs 91 (253)
...+++.|++...||+ +.-+|..+.. +.. ....+. ++.+.++++.|.+.-+|=-
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~ 161 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHP 161 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 3455556666666666 6677986310 000 111222 2346777777877776644
No 179
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=28.21 E-value=3.8e+02 Score=23.90 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHcCCccEEEecCCcHHHHHHHH-HhCCCCCcceEEecCCCC-CCcccHhhHHHHHHhcCCeEEecccccc
Q 025396 71 ETIPALQKQKEAGKIRFIGITGLPLEIFTYVL-DRMPPGAVDVILSYCHYS-INDSTLEDLLPYLKSKGVGVISASPLAM 148 (253)
Q Consensus 71 ~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~-~~~~~~~~~~~~~q~~~~-~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 148 (253)
+-.+++.++.+.|.+.+|-.---.--.+..+. .... .+. -.|. ...+..+.+++.|+++||.++.-+ +
T Consensus 10 D~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~--~p~-----~gY~~~~~~~L~~~L~~~~~~gIkvI~Na---G 79 (362)
T PF07287_consen 10 DRPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRK--DPT-----KGYAPDFVRDLRPLLPAAAEKGIKVITNA---G 79 (362)
T ss_pred CcHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhh--CCC-----CCchHHHHHHHHHHHHHHHhCCCCEEEeC---C
Confidence 44566677777888887765443211111111 1110 111 1111 112244578888999999988653 2
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 025396 149 GLLTDNGPPEWHPASPELKSACKAAAARCKEKGKN 183 (253)
Q Consensus 149 G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 183 (253)
|. ++ ....+.+++++++.|++
T Consensus 80 g~------------np--~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 80 GL------------NP--AGCADIVREIARELGLS 100 (362)
T ss_pred CC------------CH--HHHHHHHHHHHHhcCCC
Confidence 21 11 22456677888887765
No 180
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=28.21 E-value=70 Score=23.38 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=14.5
Q ss_pred HHHHHHHHcCCccEEEecCCcHHHHH
Q 025396 74 PALQKQKEAGKIRFIGITGLPLEIFT 99 (253)
Q Consensus 74 ~aL~~l~~~G~i~~iGvsn~~~~~~~ 99 (253)
+..++++++|| .++|++.-+.+++.
T Consensus 85 eeI~~~v~~GK-~AFGft~~hie~vv 109 (117)
T PF10941_consen 85 EEIRKEVAEGK-KAFGFTAQHIEQVV 109 (117)
T ss_pred HHHHHHHHcCC-eeeeccHHHHHHHH
Confidence 44556666666 56666665554443
No 181
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.11 E-value=3.5e+02 Score=23.59 Aligned_cols=72 Identities=10% Similarity=-0.087 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCC-ccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccc
Q 025396 72 TIPALQKQKEAGK-IRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPL 146 (253)
Q Consensus 72 ~~~aL~~l~~~G~-i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 146 (253)
.++.+..+.+.-. =-+.|=|.++.+.+..+++.. .+++++.-....---.+..++..+|+.+|+.++..+.+
T Consensus 216 d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~---~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~ 288 (354)
T cd03317 216 DLIDHAELQKLLKTPICLDESIQSAEDARKAIELG---ACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGML 288 (354)
T ss_pred HHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcC---CCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcc
Confidence 4556666665532 236666778888888888753 45555432221111122247889999999999764443
No 182
>PF13518 HTH_28: Helix-turn-helix domain
Probab=27.83 E-value=75 Score=18.73 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=15.2
Q ss_pred HHHHHHHhCCCHHHHHHHhhhc
Q 025396 173 AAARCKEKGKNISKIAMQYSLS 194 (253)
Q Consensus 173 l~~la~~~~~s~~q~al~~~l~ 194 (253)
+.++|.++|+|..++ .+|+-.
T Consensus 15 ~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 15 VREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred HHHHHHHHCCCHhHH-HHHHHH
Confidence 577888888887665 777653
No 183
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=27.69 E-value=5e+02 Score=24.09 Aligned_cols=23 Identities=4% Similarity=0.083 Sum_probs=12.3
Q ss_pred HHhHHHHHHHHHHcCCccEEEec
Q 025396 69 VNETIPALQKQKEAGKIRFIGIT 91 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~i~~iGvs 91 (253)
.+.+.+.++.++++..++.+-++
T Consensus 224 ~e~Vv~Ei~~l~~~~gv~~~~~~ 246 (497)
T TIGR02026 224 PKKFVDEIEWLVRTHGVGFFILA 246 (497)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEE
Confidence 34556666666555445555444
No 184
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=27.68 E-value=66 Score=18.26 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=13.2
Q ss_pred HHHHHHHHHhCCCHHHHHH
Q 025396 171 KAAAARCKEKGKNISKIAM 189 (253)
Q Consensus 171 ~~l~~la~~~~~s~~q~al 189 (253)
+.+..||++++++..++.-
T Consensus 7 Dtl~~IA~~~~~~~~~l~~ 25 (44)
T PF01476_consen 7 DTLWSIAKRYGISVDELME 25 (44)
T ss_dssp --HHHHHHHTTS-HHHHHH
T ss_pred CcHHHHHhhhhhhHhHHHH
Confidence 4578899999999887643
No 185
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=27.65 E-value=2.8e+02 Score=21.16 Aligned_cols=64 Identities=17% Similarity=0.117 Sum_probs=41.5
Q ss_pred CCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhC--CCcccEEEeccCCCCChhhhHHhHHHHHHHHHHc
Q 025396 13 RNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQ--LDYVDILQCHDIEFGSLDQIVNETIPALQKQKEA 82 (253)
Q Consensus 13 R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~ 82 (253)
|=.+.|+-|++. ....+..+++.+.++++.+. ....|++++-.+... .....++.+.|..+.+.
T Consensus 49 RlG~sVSKKvg~----~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~--~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDT----RAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAA--KASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccC----cchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcc--cCCHHHHHHHHHHHHHH
Confidence 444566667642 24568888888888887653 234499999887432 23456777777776655
No 186
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=27.64 E-value=4.2e+02 Score=23.24 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHH-hHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCc
Q 025396 32 SAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVN-ETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAV 110 (253)
Q Consensus 32 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~-~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~ 110 (253)
+.+.|..+++...+. |.+.-|+.+||+.. .+..+.+ --+.++..|++.=. .-||.|.|+......+.... .
T Consensus 144 tl~Ei~~Av~~i~~~-G~~~~~i~llhC~s--~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAva----l 215 (329)
T TIGR03569 144 TLEEIEAAVGVLRDA-GTPDSNITLLHCTT--EYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAVA----L 215 (329)
T ss_pred CHHHHHHHHHHHHHc-CCCcCcEEEEEECC--CCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHHH----c
Confidence 688899998887543 43212699999974 1122222 23555666665433 57999999766544444321 1
Q ss_pred ceEEecCCCCCC
Q 025396 111 DVILSYCHYSIN 122 (253)
Q Consensus 111 ~~~~~q~~~~~~ 122 (253)
...++.-|+++.
T Consensus 216 GA~iIEkH~tld 227 (329)
T TIGR03569 216 GATVIEKHFTLD 227 (329)
T ss_pred CCCEEEeCCChh
Confidence 222445555443
No 187
>PLN02438 inositol-3-phosphate synthase
Probab=27.39 E-value=4.2e+02 Score=24.80 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhCCCcccEEEeccCCCC-ChhhhHHhHHHHHHHHHHcCC
Q 025396 33 AERVTRSIDESLARLQLDYVDILQCHDIEFG-SLDQIVNETIPALQKQKEAGK 84 (253)
Q Consensus 33 ~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~-~~~~~~~~~~~aL~~l~~~G~ 84 (253)
-+.|++.|+.-.++-|+|++=++..-+-+.. +......+++++|++.++++.
T Consensus 206 ve~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~~~~~~~~~~t~~~l~~ai~~~~ 258 (510)
T PLN02438 206 MDQIRKDIREFKEKNKVDKVVVLWTANTERYSNVVVGLNDTMENLLASIEKDE 258 (510)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcCCCcccCCHHHHHHHHhcCC
Confidence 4667777777778888887554444444322 112234578999999998875
No 188
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=27.39 E-value=3e+02 Score=21.47 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=12.4
Q ss_pred HHhHHHHHHHHHHcCCccEEEecCCcH
Q 025396 69 VNETIPALQKQKEAGKIRFIGITGLPL 95 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~i~~iGvsn~~~ 95 (253)
...+.+.++++.+ -+..+.+-.|++
T Consensus 87 ~~~~l~~l~~~~d--~v~~vllVgH~P 111 (163)
T COG2062 87 PGTVLDYLEALGD--GVGSVLLVGHNP 111 (163)
T ss_pred HHHHHHHHHHhcc--cCceEEEECCCc
Confidence 3444444444444 455666666644
No 189
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=27.38 E-value=2.6e+02 Score=22.91 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCccEEEecCC-cHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEe
Q 025396 73 IPALQKQKEAGKIRFIGITGL-PLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 73 ~~aL~~l~~~G~i~~iGvsn~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~ 142 (253)
.++++.+.++=.=--||..+- ++++++++++. .-+|+. .+++. .++++.|..+||.++.
T Consensus 52 ~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~a----Ga~fiV---sP~~~----~ev~~~a~~~~ip~~P 111 (211)
T COG0800 52 LEAIRALAKEFPEALIGAGTVLNPEQARQAIAA----GAQFIV---SPGLN----PEVAKAANRYGIPYIP 111 (211)
T ss_pred HHHHHHHHHhCcccEEccccccCHHHHHHHHHc----CCCEEE---CCCCC----HHHHHHHHhCCCcccC
Confidence 334444444322446888884 99999999987 345553 33333 4899999999999884
No 190
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=27.36 E-value=7.6e+02 Score=26.13 Aligned_cols=137 Identities=12% Similarity=0.102 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhhCCCcccEEEeccCCCC--ChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCc
Q 025396 33 AERVTRSIDESLARLQLDYVDILQCHDIEFG--SLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAV 110 (253)
Q Consensus 33 ~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~--~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~ 110 (253)
.+.+.+...+. -.-|.+.||+- ++.. +...-+..+...+....+.-. --|-|-+.+++.++.+++..+.
T Consensus 383 ~~~al~~A~~q-ve~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~-vPlsIDS~~~~ViEaaLk~~~G--- 453 (1229)
T PRK09490 383 YDEALDVARQQ-VENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIAR-VPIMIDSSKWEVIEAGLKCIQG--- 453 (1229)
T ss_pred HHHHHHHHHHH-HHCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCC-ceEEEeCCcHHHHHHHHhhcCC---
Confidence 33444433333 35688999984 3321 212222333333333222112 3477778999999999997642
Q ss_pred ceEEecCCCCCCcccHhhHHHHHHhcCCeEEecccccccccCCCCCCCCCCCCHHHHHHHHHHHHHHH-HhCCCHHHH
Q 025396 111 DVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPASPELKSACKAAAARCK-EKGKNISKI 187 (253)
Q Consensus 111 ~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~-~~~~s~~q~ 187 (253)
..+.|-++..-.+....++++.|+++|..|+++.--..|. +...++-...++++-+.+. ++|+++..+
T Consensus 454 ~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~---------~~t~e~r~~ia~r~~~~~~~~~Gi~~~dI 522 (1229)
T PRK09490 454 KGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQ---------ADTRERKIEICKRAYDILTEEVGFPPEDI 522 (1229)
T ss_pred CCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCC---------CCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 1233333321112223478999999999999875333332 1223445555666666654 488876554
No 191
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=27.33 E-value=2.3e+02 Score=20.05 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=39.8
Q ss_pred CCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhC--CCcccEEEeccCCCCChhhhHHhHHHHHHHH
Q 025396 13 RNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQ--LDYVDILQCHDIEFGSLDQIVNETIPALQKQ 79 (253)
Q Consensus 13 R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l 79 (253)
|=.+.|+-|++. ...++.+++.+.++.+... ....|++++-.+... +....+..+.|..+
T Consensus 42 RlGi~vsKK~g~-----AV~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~--~~~~~~l~~~l~~l 103 (105)
T TIGR00188 42 RVGLSVSKKVKN-----AVERNRIKRLIREVFRERQELLKALDVVVIVRKGFS--ELTYEAFLKLLLQL 103 (105)
T ss_pred EEEEEEecccCc-----hhHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcC--cCCHHHHHHHHHHH
Confidence 444667777664 4678888888888887653 235899999888533 23355666666654
No 192
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=27.16 E-value=3.3e+02 Score=21.90 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=57.8
Q ss_pred HHhhCCCcccEEEec-cCCCC--ChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCC
Q 025396 44 LARLQLDYVDILQCH-DIEFG--SLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYS 120 (253)
Q Consensus 44 L~~L~~d~iDl~~lH-~~~~~--~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 120 (253)
+..-|.++||+=.=- +|... +...-+..+...++.+.+..-=--+.+-+++++.++.+++. ..+++.+...+.
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~----g~~~ind~~~~~ 103 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA----GADIINDISGFE 103 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH----TSSEEEETTTTS
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc----CcceEEeccccc
Confidence 445688999975332 12111 11222344555566666422223677778899999999998 335554444432
Q ss_pred CCcccHhhHHHHHHhcCCeEEecccc
Q 025396 121 INDSTLEDLLPYLKSKGVGVISASPL 146 (253)
Q Consensus 121 ~~~~~~~~~~~~~~~~gi~v~~~~pl 146 (253)
. .+++++.++++|..++.+..-
T Consensus 104 ~----~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 104 D----DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp S----STTHHHHHHHHTSEEEEESES
T ss_pred c----cchhhhhhhcCCCEEEEEecc
Confidence 2 258999999999999976655
No 193
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=27.00 E-value=3.7e+02 Score=22.40 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCC--ChhhhHHhHHHHHHHHHHc-CCccEEEec---CCcHHHHHHHHHh
Q 025396 31 FSAERVTRSIDESLARLQLDYVDILQCHDIEFG--SLDQIVNETIPALQKQKEA-GKIRFIGIT---GLPLEIFTYVLDR 104 (253)
Q Consensus 31 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~--~~~~~~~~~~~aL~~l~~~-G~i~~iGvs---n~~~~~~~~~~~~ 104 (253)
++.+.. .++-+.|.++|++++.+-+....... +..-.....++.++.+.+. +.++...++ ..+.+.++.+.+.
T Consensus 19 ~~~~~k-~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLEQV-RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHc
Confidence 455544 45555699999999999865432100 0001123456666666443 446666664 2245666666554
Q ss_pred CCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEec
Q 025396 105 MPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISA 143 (253)
Q Consensus 105 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~ 143 (253)
.++.+.+-...+-. ....+.+++++++|+.+...
T Consensus 98 ----g~~~iri~~~~s~~-~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 98 ----GVDVVRVATHCTEA-DVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred ----CCCEEEEEechhhH-HHHHHHHHHHHHCCCeEEEE
Confidence 33433322222211 12347899999999877543
No 194
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=26.99 E-value=3.6e+02 Score=22.26 Aligned_cols=85 Identities=16% Similarity=0.222 Sum_probs=43.6
Q ss_pred cccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecC-CcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhH
Q 025396 51 YVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITG-LPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDL 129 (253)
Q Consensus 51 ~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 129 (253)
.+|-+.+|..+...... .--|+.+.++.+.-.+.-|.-.. .+.+.+.++.+.. .++-++.---++...-...++
T Consensus 166 g~~~ii~~~i~~~g~~~--g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~---G~~gvivg~al~~~~~~~~~~ 240 (253)
T PRK02083 166 GAGEILLTSMDRDGTKN--GYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEG---GADAALAASIFHFGEITIGEL 240 (253)
T ss_pred CCCEEEEcCCcCCCCCC--CcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhC---CccEEeEhHHHHcCCCCHHHH
Confidence 35566777654211111 11255666666554555555554 3667777777653 233333211111122233578
Q ss_pred HHHHHhcCCeE
Q 025396 130 LPYLKSKGVGV 140 (253)
Q Consensus 130 ~~~~~~~gi~v 140 (253)
.++|++.||.+
T Consensus 241 ~~~~~~~~~~~ 251 (253)
T PRK02083 241 KAYLAEQGIPV 251 (253)
T ss_pred HHHHHHCCCcc
Confidence 88888888764
No 195
>PRK01060 endonuclease IV; Provisional
Probab=26.99 E-value=3.5e+02 Score=22.54 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcC
Q 025396 36 VTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAG 83 (253)
Q Consensus 36 i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G 83 (253)
+.+.+ +.++++|.+.++|+ +++|..-.......+..+.+.++.++-
T Consensus 14 ~~~~l-~~~~~~G~d~vEl~-~~~p~~~~~~~~~~~~~~~lk~~~~~~ 59 (281)
T PRK01060 14 LEGAV-AEAAEIGANAFMIF-TGNPQQWKRKPLEELNIEAFKAACEKY 59 (281)
T ss_pred HHHHH-HHHHHcCCCEEEEE-CCCCCCCcCCCCCHHHHHHHHHHHHHc
Confidence 33333 66788899999964 555531111112334455565555443
No 196
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=26.97 E-value=1.4e+02 Score=22.41 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=41.3
Q ss_pred CcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHH
Q 025396 14 NEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKE 81 (253)
Q Consensus 14 ~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~ 81 (253)
..++-.||+... ...+|..+..-.+...+-|.-..=-++++.+.++.-.......+++.|..|++
T Consensus 41 ~~viWlT~~~~~---~~I~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD 105 (136)
T PF05763_consen 41 TPVIWLTKVEGE---NAISPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKD 105 (136)
T ss_pred CcEEEEeccCCC---CccCchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHH
Confidence 346666666421 35677777666666666665533348888888665444446778888887774
No 197
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.82 E-value=47 Score=33.92 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=46.0
Q ss_pred HHhHHHHHHHHHHcCCccEE-Ee---cCCcHHHHHHHHHhCCCCCcceEEecCCCCCCccc--HhhHHHHHHhcCCeEEe
Q 025396 69 VNETIPALQKQKEAGKIRFI-GI---TGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDST--LEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~i~~i-Gv---sn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~gi~v~~ 142 (253)
-..++++|..+++.|+|..| |= =.--.+.+.-++.++.+ +++|-+.+.. ...++.+|+++++|.-.
T Consensus 599 ~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsTac~--------~LdyiVVdt~e~aq~cI~fl~~~nLgraT 670 (1293)
T KOG0996|consen 599 RNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTACA--------RLDYIVVDTIETAQECINFLKKNNLGRAT 670 (1293)
T ss_pred hhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHHhcc--------ccceEEeccHHHHHHHHHHHHHcCCCcee
Confidence 46799999999999988643 10 00112334444554332 3444344432 24799999999999999
Q ss_pred cccccc
Q 025396 143 ASPLAM 148 (253)
Q Consensus 143 ~~pl~~ 148 (253)
|-+|..
T Consensus 671 Fi~LDk 676 (1293)
T KOG0996|consen 671 FIILDK 676 (1293)
T ss_pred EEehHh
Confidence 998864
No 198
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=26.65 E-value=1.8e+02 Score=27.22 Aligned_cols=88 Identities=14% Similarity=0.260 Sum_probs=53.6
Q ss_pred CCCcEEEEeccccccCC--------------CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHH
Q 025396 12 PRNEYIVSTKCGRYVDG--------------FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQ 77 (253)
Q Consensus 12 ~R~~~~I~tK~~~~~~~--------------~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~ 77 (253)
-+.++||++=+|--... .+.+++.| -+|+.+.|+|.+. ..++++++..+
T Consensus 155 L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vEvd~~ri-------~kR~~~g~ld~~~----------~~ldea~~~~~ 217 (546)
T PF01175_consen 155 LAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVEVDPSRI-------EKRLEQGYLDEVT----------DDLDEALARAK 217 (546)
T ss_dssp -TT-EEEEE--STTCCHHHHHHHHTT-EEEEEES-HHHH-------HHHHHTTSSSEEE----------SSHHHHHHHHH
T ss_pred CcceEEEEecccccccchHHHHHhcCceEEEEEECHHHH-------HHHHhCCCeeEEc----------CCHHHHHHHHH
Confidence 36778999888752110 23344433 4677788999542 22789999999
Q ss_pred HHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCC
Q 025396 78 KQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCH 118 (253)
Q Consensus 78 ~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~ 118 (253)
+.+++|+..+||+-..-.+.+.++++.- . .++++.-|-.
T Consensus 218 ea~~~~~~~SIg~~GN~ad~~~~l~~~~-i-~pDl~tDQTS 256 (546)
T PF01175_consen 218 EARAKKEPLSIGLLGNAADLWEELVERG-I-IPDLVTDQTS 256 (546)
T ss_dssp HHHHTT--EEEEEES-HHHHHHHHHHTT-----SEE---SS
T ss_pred HhhccCCeeEEEEeccHHHHHHHHHHcC-C-CCCcccCCCc
Confidence 9999999999999999889999988752 1 4566655543
No 199
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.59 E-value=3e+02 Score=21.19 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=37.7
Q ss_pred CccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCc---------ccHhhHHHHHHh--cCCeEEeccc
Q 025396 84 KIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSIND---------STLEDLLPYLKS--KGVGVISASP 145 (253)
Q Consensus 84 ~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~---------~~~~~~~~~~~~--~gi~v~~~~p 145 (253)
.+..+|++..+...+.+.++......++.+.+.+.-|=.. .....+++.+++ .+..++..++
T Consensus 42 ~~~n~g~~G~t~~~~~~~l~~~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~ 114 (191)
T cd01836 42 RWRLFAKTGATSADLLRQLAPLPETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAV 114 (191)
T ss_pred EEEEEecCCcCHHHHHHHHHhcccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 5778899998777776666543223567666554433211 112367778877 6777776553
No 200
>COG5482 Uncharacterized conserved protein [Function unknown]
Probab=26.52 E-value=2.2e+02 Score=22.70 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=26.0
Q ss_pred hhHHHHHHhcCCeEEeccccc-ccccCCCCCCCCCC
Q 025396 127 EDLLPYLKSKGVGVISASPLA-MGLLTDNGPPEWHP 161 (253)
Q Consensus 127 ~~~~~~~~~~gi~v~~~~pl~-~G~l~~~~~~~~~~ 161 (253)
..+...|++.|++++..+-.+ -+.|.+...|..+.
T Consensus 85 ~r~r~LcRRLg~G~lgvs~~g~v~ilv~~v~PepR~ 120 (229)
T COG5482 85 KRYRDLCRRLGLGMLGVSDVGDVSILVGSVTPEPRT 120 (229)
T ss_pred HHHHHHHHHhcCceEEEeecCceeEEEeecCCCCcc
Confidence 368899999999999877665 35677666666443
No 201
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=26.48 E-value=3.5e+02 Score=21.86 Aligned_cols=27 Identities=0% Similarity=-0.065 Sum_probs=20.2
Q ss_pred HHHcCCccEEEecCCcHHHHHHHHHhC
Q 025396 79 QKEAGKIRFIGITGLPLEIFTYVLDRM 105 (253)
Q Consensus 79 l~~~G~i~~iGvsn~~~~~~~~~~~~~ 105 (253)
+.+.|....+=+++|+.+.+..+.+..
T Consensus 112 l~~~~~~~~v~i~SF~~~~l~~~~~~~ 138 (226)
T cd08568 112 VEKFNALDRVIFSSFNHDALRELRKLD 138 (226)
T ss_pred HHHcCCCCcEEEEECCHHHHHHHHHhC
Confidence 344577778889999998888876643
No 202
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=26.34 E-value=3.1e+02 Score=23.80 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHh
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDR 104 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~ 104 (253)
.-......+++.+.|+.||.++=.-....+ ...+.-.+++++|+++|++ |...| +.+++.+..+.
T Consensus 46 ~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS-------~r~~~Y~~~~~~L~~~g~a-Y~C~C--sr~~l~~~r~~ 110 (314)
T PF00749_consen 46 ERCRPEFYDAILEDLRWLGLEWDYGPYYQS-------DRLEIYQEAAEKLIDKGKA-YPCFC--SREELKAAREA 110 (314)
T ss_dssp TTCHHHHHHHHHHHHHHHT---STCEEEGG-------GGHHHHHHHHHHHHHTTSE-EEEES--EHHHHHHHHHH
T ss_pred ccchhhHHHHHHhheeEEEEecCCeEEeHH-------HHHHHHHHHHHHHhhcCCC-ccccC--CHHHHHHHHHH
Confidence 355678889999999999997431122222 3467778889999999996 44343 46666665543
No 203
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=26.33 E-value=1.6e+02 Score=23.61 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCCHHHHHHHhhhcCCCcceEeeCCC--CHHHHHHHHHHHHh
Q 025396 181 GKNISKIAMQYSLSNKDISSVLVGMN--SVKQVQENVTAASE 220 (253)
Q Consensus 181 ~~s~~q~al~~~l~~~~v~~vl~g~~--~~~~l~en~~a~~~ 220 (253)
+.|=.++||+|++.++.-..++.|+. ..+|.-.|+..+..
T Consensus 71 D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L~~ 112 (203)
T TIGR01378 71 DTTDLELALKYALERGADEITILGATGGRLDHTLANLNLLLE 112 (203)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 34567899999998875445777765 88999999998744
No 204
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=26.31 E-value=7.2e+02 Score=25.46 Aligned_cols=74 Identities=14% Similarity=0.014 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhCCC--HHHHHHHhhhcCC-C-cceEeeCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHhcc
Q 025396 167 KSACKAAAARCKEKGKN--ISKIAMQYSLSNK-D-ISSVLVGMNSVKQVQENVTAASELALFGKDQEALTEVEAILKP 240 (253)
Q Consensus 167 ~~~~~~l~~la~~~~~s--~~q~al~~~l~~~-~-v~~vl~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~i~~~~~~ 240 (253)
++..+.++.+-++.... ...+.-+|.+.+| . +.+++|...-.+++++-.+-.-.-.-..|++++..+|.+-.++
T Consensus 417 Lr~~~~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v~~~Ps~~~~~~~ekee~e~L~~~~~~l~de~~~ki~~~~~~ 494 (978)
T COG1026 417 LRFLDYLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVLPSPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKK 494 (978)
T ss_pred hhhHHHHHHHHHhhhcChHHHHHHHHHhhcCCccEEEEEecChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 33344455555544444 7889999999988 3 3345555555666654333321111336799999999876643
No 205
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=26.16 E-value=4.5e+02 Score=23.07 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=31.5
Q ss_pred CccEEEecC-CcHHHHHHHHHhCCCCCcceEE---ecCCCCCCcccHhhHHHHHHhcCCeEEe
Q 025396 84 KIRFIGITG-LPLEIFTYVLDRMPPGAVDVIL---SYCHYSINDSTLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 84 ~i~~iGvsn-~~~~~~~~~~~~~~~~~~~~~~---~q~~~~~~~~~~~~~~~~~~~~gi~v~~ 142 (253)
++.++++.+ .+++.+++++.. ....++ +..++.-.....+++.+.|+++|+.++.
T Consensus 126 ~~v~v~~~~~~d~~~le~ai~~----~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~viv 184 (363)
T TIGR01437 126 KVVEAGYANECSAEQLEAAITE----KTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIV 184 (363)
T ss_pred eEEEEcCCCCCCHHHHHHhcCh----hceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEE
Confidence 556677654 367777777642 222222 1112211123346899999999998863
No 206
>TIGR03586 PseI pseudaminic acid synthase.
Probab=25.99 E-value=3.2e+02 Score=23.95 Aligned_cols=81 Identities=11% Similarity=0.169 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHH-hHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCc
Q 025396 32 SAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVN-ETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAV 110 (253)
Q Consensus 32 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~-~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~ 110 (253)
+.+.+..+++...+. |. -|+.++|+.. .+..+.+ --+.++..|++.-. .-||+|.|+......+.... .
T Consensus 145 t~~Ei~~Av~~i~~~-g~--~~i~LlhC~s--~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~aAva----~ 214 (327)
T TIGR03586 145 TLEEIQEAVEACREA-GC--KDLVLLKCTS--SYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPVAAVA----L 214 (327)
T ss_pred CHHHHHHHHHHHHHC-CC--CcEEEEecCC--CCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHHHHH----c
Confidence 678888888877533 32 4799999863 2222232 23666666666543 57999999766544444321 1
Q ss_pred ceEEecCCCCCC
Q 025396 111 DVILSYCHYSIN 122 (253)
Q Consensus 111 ~~~~~q~~~~~~ 122 (253)
...++.-|+++.
T Consensus 215 GA~iIEkH~tld 226 (327)
T TIGR03586 215 GACVIEKHFTLD 226 (327)
T ss_pred CCCEEEeCCChh
Confidence 122445555543
No 207
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=25.95 E-value=1.3e+02 Score=24.01 Aligned_cols=40 Identities=23% Similarity=0.116 Sum_probs=25.0
Q ss_pred cccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHH
Q 025396 51 YVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEI 97 (253)
Q Consensus 51 ~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~ 97 (253)
.+|.++||..+ + .+..+.+.+......++.+|++++....
T Consensus 73 ~~d~Vqlhg~e--~-----~~~~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 73 GLDVVQLHGDE--S-----PEYCAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred CCCEEEECCCC--C-----HHHHHHHHhhcCCcEEEEEecCChhhHH
Confidence 47889999853 1 2233444433345678889999875543
No 208
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=25.81 E-value=73 Score=28.32 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=28.5
Q ss_pred EEecCC----cHHHHHHHHHhCCCCCcceEEecCCCCCCc-----ccHhhHHHHHHhcCCeEEe
Q 025396 88 IGITGL----PLEIFTYVLDRMPPGAVDVILSYCHYSIND-----STLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 88 iGvsn~----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~-----~~~~~~~~~~~~~gi~v~~ 142 (253)
+|+|-+ +.+...+.++......+..++.-++.--.+ ....+++++|+++|+.+++
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~ 65 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIA 65 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEE
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 688866 345555555533222455554444431111 2234799999999999985
No 209
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=25.73 E-value=3.4e+02 Score=21.46 Aligned_cols=87 Identities=22% Similarity=0.263 Sum_probs=45.7
Q ss_pred HHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHc--CCccEEEecCCcHH--HHHHHHHhCCCCCcceEEecCC
Q 025396 43 SLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEA--GKIRFIGITGLPLE--IFTYVLDRMPPGAVDVILSYCH 118 (253)
Q Consensus 43 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~--G~i~~iGvsn~~~~--~~~~~~~~~~~~~~~~~~~q~~ 118 (253)
-.+.| -+.+|++=+-.+ .......+.+.++++. +..-.+++-.+++. ++.++.+. ..+++. ++
T Consensus 17 ~~~~l-~~~v~~iev~~~------l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~----Gad~i~--vh 83 (206)
T TIGR03128 17 LAEKV-ADYVDIIEIGTP------LIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAA----GADIVT--VL 83 (206)
T ss_pred HHHHc-ccCeeEEEeCCH------HHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHc----CCCEEE--Ee
Confidence 33444 355776666332 1123345666676666 33333343333444 45665554 345544 33
Q ss_pred CCCCcccHhhHHHHHHhcCCeEEe
Q 025396 119 YSINDSTLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~gi~v~~ 142 (253)
+........+++++|+++|+.++.
T Consensus 84 ~~~~~~~~~~~i~~~~~~g~~~~~ 107 (206)
T TIGR03128 84 GVADDATIKGAVKAAKKHGKEVQV 107 (206)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEE
Confidence 322222335789999999988874
No 210
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=25.46 E-value=2.4e+02 Score=27.09 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=43.1
Q ss_pred hhHHHHHHhcCCeEEecc---cccccc---cCCCCCCCCCCCCHHHH--HHHHHHHHHHHHhCCC--------HHHHHHH
Q 025396 127 EDLLPYLKSKGVGVISAS---PLAMGL---LTDNGPPEWHPASPELK--SACKAAAARCKEKGKN--------ISKIAMQ 190 (253)
Q Consensus 127 ~~~~~~~~~~gi~v~~~~---pl~~G~---l~~~~~~~~~~~~~~~~--~~~~~l~~la~~~~~s--------~~q~al~ 190 (253)
+.+..||++|+|.++.-. ||..|+ |.+...+-+.|..+..+ ..-.-.+++..+||++ -.+-|..
T Consensus 58 ~ala~f~~e~~I~lVvvGPE~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~s 137 (788)
T KOG0237|consen 58 EALASFCKEHNINLVVVGPELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKS 137 (788)
T ss_pred HHHHHHHHHcceeEEEECCchhhhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeeeeCCHHHHHH
Confidence 578999999999988655 455554 33333444444432221 1111145677788874 4467888
Q ss_pred hhhcCCC
Q 025396 191 YSLSNKD 197 (253)
Q Consensus 191 ~~l~~~~ 197 (253)
|+.+.++
T Consensus 138 fi~~~~~ 144 (788)
T KOG0237|consen 138 FIQSATD 144 (788)
T ss_pred HHHhCCC
Confidence 8888774
No 211
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=25.24 E-value=1.6e+02 Score=20.89 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhC
Q 025396 34 ERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRM 105 (253)
Q Consensus 34 ~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~ 105 (253)
-.+-.+.+..+...++-++|+-.+-..|. ..+.-.++.++.+++.|+ ++-++.- ++++..+.+..
T Consensus 26 ~~lw~~r~~~~~~~~~~~idLs~v~rvDS----aglALL~~~~~~~k~~g~--~~~L~~~-p~~L~tLa~Ly 90 (99)
T COG3113 26 LPLWSQREAQLKQLDTVRIDLSGVSRVDS----AGLALLLHLIRLAKKQGN--AVTLTGV-PEQLRTLAELY 90 (99)
T ss_pred HHHHHHHHHHccccCeEEEehhhcceech----HHHHHHHHHHHHHHHcCC--eeEEecC-cHHHHHHHHHh
Confidence 34556677777777888999999998853 336678999999999999 5555544 57777776654
No 212
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=25.19 E-value=2.3e+02 Score=24.53 Aligned_cols=76 Identities=8% Similarity=0.088 Sum_probs=43.7
Q ss_pred HHHHHhhCCCcccEEEeccCCCCChhhhHHhH-HHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCC
Q 025396 41 DESLARLQLDYVDILQCHDIEFGSLDQIVNET-IPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHY 119 (253)
Q Consensus 41 ~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~-~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~ 119 (253)
+.-|++.|.++|--+++.+- ++ ...++. .+.++++.++++ .|++.++...+-.. +
T Consensus 104 d~~Lr~~ginRI~dv~ip~e---~y-~~~E~~i~~i~~~~~~~~~-------~~s~~e~i~~lGk~-----------i-- 159 (301)
T TIGR00321 104 DKKLREEGINRIGDVFVPNE---NF-EVFEEWLVEIFSEMLGEQP-------IITPSEFIDEIGKR-----------I-- 159 (301)
T ss_pred hHHHHHcCCCccceecCCHH---HH-HHHHHHHHHHHHHHHhcCC-------CcCHHHHHHHHHhh-----------c--
Confidence 77788888888877777652 22 223322 223444443332 36676665554431 1
Q ss_pred CCCcccHhhHHHHHHhcCCeEEec
Q 025396 120 SINDSTLEDLLPYLKSKGVGVISA 143 (253)
Q Consensus 120 ~~~~~~~~~~~~~~~~~gi~v~~~ 143 (253)
.+ ....++.+|.++||.|.+=
T Consensus 160 --~~-~e~Sil~~Ayk~~VPIf~P 180 (301)
T TIGR00321 160 --ND-KRSSIRYAAYKRKIPIFCP 180 (301)
T ss_pred --CC-ccchHHHHHHHcCCCEECC
Confidence 11 1137899999999999853
No 213
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=25.04 E-value=4e+02 Score=22.14 Aligned_cols=115 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHc-CCccE------EEecCCcHHHHHHHHHhCCCCCcceEE
Q 025396 42 ESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEA-GKIRF------IGITGLPLEIFTYVLDRMPPGAVDVIL 114 (253)
Q Consensus 42 ~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~-G~i~~------iGvsn~~~~~~~~~~~~~~~~~~~~~~ 114 (253)
+.++.+|.+++.+.+=+...+..........-+....+.+. |..-. +++.+.+++.....++..
T Consensus 17 ~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~--------- 87 (279)
T cd00019 17 KRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERL--------- 87 (279)
T ss_pred HHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHH---------
Q ss_pred ecCCCCCCcccHhhHHHHHHhcCCeEEecccccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 025396 115 SYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGKN 183 (253)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 183 (253)
...+++|++-|+.++.+.|-.... .............+.++.++|+++|++
T Consensus 88 ------------~~~i~~A~~lG~~~v~~~~g~~~~------~~~~~~~~~~~~~l~~l~~~a~~~gi~ 138 (279)
T cd00019 88 ------------KDEIERCEELGIRLLVFHPGSYLG------QSKEEGLKRVIEALNELIDKAETKGVV 138 (279)
T ss_pred ------------HHHHHHHHHcCCCEEEECCCCCCC------CCHHHHHHHHHHHHHHHHHhccCCCCE
No 214
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.02 E-value=4.8e+02 Score=23.83 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEe-ccCCC------------CChhhhHHhHHHHHHHHHHcCCccEEEecCCcH
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQC-HDIEF------------GSLDQIVNETIPALQKQKEAGKIRFIGITGLPL 95 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~l-H~~~~------------~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~ 95 (253)
..+.+.+.+.++..+ .++.+++.+|.+ |.|.. ++.+....-...+.+.|.+.|. ..+|+++|..
T Consensus 215 gqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 215 HQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 457888888877766 588888888866 33321 1111111222335566777786 5589999843
No 215
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=24.63 E-value=2.7e+02 Score=21.20 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=27.9
Q ss_pred hhHHHHHHhcCCeEEecccccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 025396 127 EDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGKN 183 (253)
Q Consensus 127 ~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 183 (253)
..+++.++..+..++..++..... ..+......+.....-+.++++|+++++.
T Consensus 95 ~~~i~~i~~~~~~vil~~~~~~~~----~~~~~~~~~~~~~~~n~~l~~~a~~~~v~ 147 (185)
T cd01832 95 EEAVRRLRAAGARVVVFTIPDPAV----LEPFRRRVRARLAAYNAVIRAVAARYGAV 147 (185)
T ss_pred HHHHHHHHhCCCEEEEecCCCccc----cchhHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 367888888888888766553300 00000001122333345567777777654
No 216
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=24.54 E-value=5e+02 Score=22.99 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcC-CccEEEecCCcHHHHHHHHHhCCCC
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAG-KIRFIGITGLPLEIFTYVLDRMPPG 108 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G-~i~~iGvsn~~~~~~~~~~~~~~~~ 108 (253)
.++.+.. ..+-+.|.++|+++|++- .| .. .+.-++.++.+.+.+ ..+..+.+..+.+.++.+.+.
T Consensus 19 ~~s~~~k-~~ia~~L~~~Gv~~IEvG---~p---~~---~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~---- 84 (365)
T TIGR02660 19 AFTAAEK-LAIARALDEAGVDELEVG---IP---AM---GEEERAVIRAIVALGLPARLMAWCRARDADIEAAARC---- 84 (365)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEe---CC---CC---CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcC----
Confidence 3555544 445566999999999884 33 21 133466677776664 367777777778888777765
Q ss_pred CcceEEecCCCCC---------Cc----ccHhhHHHHHHhcCCeEE
Q 025396 109 AVDVILSYCHYSI---------ND----STLEDLLPYLKSKGVGVI 141 (253)
Q Consensus 109 ~~~~~~~q~~~~~---------~~----~~~~~~~~~~~~~gi~v~ 141 (253)
.++.+.+-+..+- .. ....+.+++++++|+.+.
T Consensus 85 g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 85 GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 2232222222211 11 011367889999998765
No 217
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=24.37 E-value=1.5e+02 Score=23.67 Aligned_cols=67 Identities=13% Similarity=-0.005 Sum_probs=42.0
Q ss_pred hHHHHHHhcCCeEEe-cccccccccCCCCCCCCCCC---C---HHHHHHHHHHHHHHHHhCCCHHHHHHHhhhc
Q 025396 128 DLLPYLKSKGVGVIS-ASPLAMGLLTDNGPPEWHPA---S---PELKSACKAAAARCKEKGKNISKIAMQYSLS 194 (253)
Q Consensus 128 ~~~~~~~~~gi~v~~-~~pl~~G~l~~~~~~~~~~~---~---~~~~~~~~~l~~la~~~~~s~~q~al~~~l~ 194 (253)
+--+..+++||.++. +..-++|...+-..-..... . ....+.+..+-+.++++++++.+.|+.-++.
T Consensus 123 ~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~aA~~~a~~ 196 (200)
T cd01075 123 RHGQMLHERGILYAPDYVVNAGGLINVADELYGGNEARVLAKVEAIYDTLLEIFAQAKQDGITTLEAADRMAEE 196 (200)
T ss_pred hHHHHHHHCCCEEeCceeeeCcCceeehhHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 456678899999997 66656776654221111110 1 1224555666778888999999988876654
No 218
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=24.21 E-value=68 Score=22.89 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=17.2
Q ss_pred HhhHHHHHHhcCCeEEeccccccc
Q 025396 126 LEDLLPYLKSKGVGVISASPLAMG 149 (253)
Q Consensus 126 ~~~~~~~~~~~gi~v~~~~pl~~G 149 (253)
.++.++||+++|+.+....|-...
T Consensus 58 kE~Ai~yaer~G~~Y~V~~p~~r~ 81 (101)
T PF04800_consen 58 KEDAIAYAERNGWDYEVEEPKKRK 81 (101)
T ss_dssp HHHHHHHHHHCT-EEEEE-STT--
T ss_pred HHHHHHHHHHcCCeEEEeCCCCCc
Confidence 368999999999999987776543
No 219
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.14 E-value=4.1e+02 Score=23.72 Aligned_cols=70 Identities=17% Similarity=0.046 Sum_probs=39.6
Q ss_pred HHHHHHHHHc------CCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccc
Q 025396 73 IPALQKQKEA------GKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASP 145 (253)
Q Consensus 73 ~~aL~~l~~~------G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~p 145 (253)
++.+.++.+. +-=-..|-|.++.+.+.++++.- ..++++.-+...=--.+..++.++|..+|+.++....
T Consensus 245 ~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~---a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 245 IERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAG---AAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGS 320 (369)
T ss_pred HHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhC---CCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 4555555544 33334444556777777776653 4455543222211112234788999999999997644
No 220
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=24.13 E-value=3.2e+02 Score=24.27 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCC
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGA 109 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~ 109 (253)
..+.+.++.-+.+.|.+.|++--| ...+.+.|...= ..|+.+|....+..+++....+.
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~ee~---------------A~~vA~~lv~ad------~~G~~SHGv~r~p~yi~~l~~G~ 63 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVPEED---------------ARAVADVLVAAD------LRGVDSHGVGRLPGYVRRLKAGK 63 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCCHHH---------------HHHHHHHHHHHH------hcCCcccchHHHHHHHHHHHcCC
Confidence 357888999999999998875211 223333333222 45788888888888877544322
Q ss_pred cc----eEEecCCCC---------CC----cccHhhHHHHHHhcCCeEEe
Q 025396 110 VD----VILSYCHYS---------IN----DSTLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 110 ~~----~~~~q~~~~---------~~----~~~~~~~~~~~~~~gi~v~~ 142 (253)
++ +...+-... +- ....+..++.|+++||++++
T Consensus 64 i~~~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~va 113 (349)
T COG2055 64 INPDAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVA 113 (349)
T ss_pred cCCCCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEE
Confidence 22 111111111 11 11235789999999999985
No 221
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=24.12 E-value=92 Score=30.34 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=34.9
Q ss_pred HHHHHhCCCHHHHHHHhhhcCC-Ccc-eEeeCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHh
Q 025396 175 ARCKEKGKNISKIAMQYSLSNK-DIS-SVLVGMNSVKQVQENVTAASELALFGKDQEALTEVEAIL 238 (253)
Q Consensus 175 ~la~~~~~s~~q~al~~~l~~~-~v~-~vl~g~~~~~~l~en~~a~~~~~~~~l~~~~~~~i~~~~ 238 (253)
.++++-+.--+.+.=+|+++++ .++ +..+....++++.+.-+..-+-....||++++++|.+.-
T Consensus 464 ~l~ek~~~lfq~lIkkYilnn~h~~t~smqpd~e~~~~~~~eE~tkL~ek~~alteeD~~ei~k~~ 529 (998)
T KOG2019|consen 464 RLAEKSKKLFQPLIKKYILNNPHCFTFSMQPDPEFAEKLEQEEATKLEEKKAALTEEDLAEIAKAG 529 (998)
T ss_pred HHhhhchhHHHHHHHHHHhcCCceEEEEecCCchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 4555533335667778999988 333 333444444444332222111123467888888886543
No 222
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=23.96 E-value=3.1e+02 Score=23.65 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=39.0
Q ss_pred HHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHh----CCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeE
Q 025396 69 VNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDR----MPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGV 140 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~----~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v 140 (253)
..++.+.|..|+++|...+|--+| +.+.+..+++. ... .-.|.....++. +....+...+++.|++.
T Consensus 33 ~~~~~e~L~~L~~~Gi~lai~S~n-~~~~a~~~l~~~~~~~~~-~~~f~~~~~~~~---pk~~~i~~~~~~l~i~~ 103 (320)
T TIGR01686 33 HKTLQEKIKTLKKQGFLLALASKN-DEDDAKKVFERRKDFILQ-AEDFDARSINWG---PKSESLRKIAKKLNLGT 103 (320)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCC-CHHHHHHHHHhCccccCc-HHHeeEEEEecC---chHHHHHHHHHHhCCCc
Confidence 567888999999999765554444 45666666665 221 112444344432 22345667777777654
No 223
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=23.86 E-value=5.1e+02 Score=22.93 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=50.6
Q ss_pred hhHHHHHHhcCCeEEecccccccccCCCCCCCCCCCCHHHHHHHHHHHHHH--HHhCCCHHHHHHHhhhcCCCcceEeeC
Q 025396 127 EDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPASPELKSACKAAAARC--KEKGKNISKIAMQYSLSNKDISSVLVG 204 (253)
Q Consensus 127 ~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la--~~~~~s~~q~al~~~l~~~~v~~vl~g 204 (253)
.+++.+|++.|+.+++-. ...+|+... .+........++..-+ -.+|.|..+++ =...+| ..+-.-
T Consensus 52 ~ell~~Anklg~~vivDv--nPsil~~l~------~S~~~l~~f~e~G~~glRlD~gfS~eei~--~ms~~~--lkieLN 119 (360)
T COG3589 52 KELLKEANKLGLRVIVDV--NPSILKELN------ISLDNLSRFQELGVDGLRLDYGFSGEEIA--EMSKNP--LKIELN 119 (360)
T ss_pred HHHHHHHHhcCcEEEEEc--CHHHHhhcC------CChHHHHHHHHhhhhheeecccCCHHHHH--HHhcCC--eEEEEc
Confidence 479999999999998521 222332211 1112222222222212 23555665544 334455 345666
Q ss_pred CCCHHHHHHHHHHH-Hhh------------hhcCCCHHHHHHHHHHhc
Q 025396 205 MNSVKQVQENVTAA-SEL------------ALFGKDQEALTEVEAILK 239 (253)
Q Consensus 205 ~~~~~~l~en~~a~-~~~------------~~~~l~~~~~~~i~~~~~ 239 (253)
+++..+..+.+-+. ..+ +...|+.+-+.+=.+.++
T Consensus 120 ~S~it~~l~~l~~~~an~~nl~~cHNyYPr~yTGLS~e~f~~kn~~fk 167 (360)
T COG3589 120 ASTITELLDSLLAYKANLENLEGCHNYYPRPYTGLSREHFKRKNEIFK 167 (360)
T ss_pred hhhhHHHHHHHHHhccchhhhhhcccccCCcccCccHHHHHHHHHHHH
Confidence 77666655444432 111 144566666666666664
No 224
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=23.80 E-value=3.4e+02 Score=20.77 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=53.2
Q ss_pred CccEEEecCCcHHHHHHHHHh-CCCC---CcceEEecCCCCCCcc--------------cHhhHHHHHHh--cCCeEEec
Q 025396 84 KIRFIGITGLPLEIFTYVLDR-MPPG---AVDVILSYCHYSINDS--------------TLEDLLPYLKS--KGVGVISA 143 (253)
Q Consensus 84 ~i~~iGvsn~~~~~~~~~~~~-~~~~---~~~~~~~q~~~~~~~~--------------~~~~~~~~~~~--~gi~v~~~ 143 (253)
.+...|++..+...+...++. .... .++.+.+.+.-|=... ..+.+++.+++ .+..++..
T Consensus 34 ~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 34 DVINRGFSGYNTRWALKVLPKIFLEEKLAQPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred heeccCCCcccHHHHHHHHHHhcCccccCCceEEEEEecCccccCCCCCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 466778888777665554442 2222 4666666654332211 12468888888 78888777
Q ss_pred ccccccccC-CC---CC-CCCCCCCHHHHHHHHHHHHHHHHhCCCH
Q 025396 144 SPLAMGLLT-DN---GP-PEWHPASPELKSACKAAAARCKEKGKNI 184 (253)
Q Consensus 144 ~pl~~G~l~-~~---~~-~~~~~~~~~~~~~~~~l~~la~~~~~s~ 184 (253)
+|...+.-. .. .. ..............+.++++|+++++..
T Consensus 114 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 159 (199)
T cd01838 114 TPPPVDEEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEELGVPV 159 (199)
T ss_pred CCCCCCHHHHhhhhccccCCccccHHHHHHHHHHHHHHHHHhCCcE
Confidence 665322110 00 00 0111122333344456788888888763
No 225
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=23.70 E-value=3.4e+02 Score=21.96 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=36.8
Q ss_pred hHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCC-CCcceEEecCCCCCCcccHhhHHHHHHhcCC
Q 025396 68 IVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPP-GAVDVILSYCHYSINDSTLEDLLPYLKSKGV 138 (253)
Q Consensus 68 ~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi 138 (253)
...++.+.|+.|+++|.-.+| +||.+.+.+...++..+. ..++.+...-......+.++-....|++.|+
T Consensus 94 ~~~g~~e~L~~Lk~~g~~~~i-~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~ 164 (224)
T PRK14988 94 LREDTVPFLEALKASGKRRIL-LTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGL 164 (224)
T ss_pred cCCCHHHHHHHHHhCCCeEEE-EeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCC
Confidence 356888999999999865444 444455556655564432 1244333222222222333334445666665
No 226
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=23.46 E-value=1.6e+02 Score=21.32 Aligned_cols=23 Identities=13% Similarity=0.328 Sum_probs=10.1
Q ss_pred HHHHHHHHhhCCCcccEEEeccC
Q 025396 38 RSIDESLARLQLDYVDILQCHDI 60 (253)
Q Consensus 38 ~~l~~sL~~L~~d~iDl~~lH~~ 60 (253)
..+++.|+.+.....|.+++..+
T Consensus 52 ~~~~~ll~~~~~~~~d~ivv~~~ 74 (137)
T cd00338 52 PGLQRLLADVKAGKIDVVLVEKL 74 (137)
T ss_pred HHHHHHHHHHHcCCCCEEEEEec
Confidence 34444444444344444444444
No 227
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=23.25 E-value=4.8e+02 Score=22.35 Aligned_cols=103 Identities=12% Similarity=0.131 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEecc-CCCC--ChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCC
Q 025396 31 FSAERVTRSIDESLARLQLDYVDILQCHD-IEFG--SLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPP 107 (253)
Q Consensus 31 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~-~~~~--~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~ 107 (253)
.+.+.+.+..++.+ .-|.|-||+=---. |... +.+.-+..+...++.+++.-.+ -|.|-+++++.++++++.
T Consensus 35 ~~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~--- 109 (282)
T PRK11613 35 NSLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKA--- 109 (282)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHc---
Confidence 45565555555554 44677777642221 3221 1122233466666777654233 489999999999999986
Q ss_pred CCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecc
Q 025396 108 GAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 108 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 144 (253)
..+++ |-+. .+.+ +++++.|+++|..++.+.
T Consensus 110 -GadiI-NDI~-g~~d---~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 110 -GAHII-NDIR-SLSE---PGALEAAAETGLPVCLMH 140 (282)
T ss_pred -CCCEE-EECC-CCCC---HHHHHHHHHcCCCEEEEc
Confidence 23433 2221 1222 367888999999998764
No 228
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.21 E-value=1.7e+02 Score=29.97 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=36.3
Q ss_pred cccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHH
Q 025396 51 YVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYV 101 (253)
Q Consensus 51 ~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~ 101 (253)
.+|+++|..|...-.......+++.|..+.+.|+ .|||.+|..+....+
T Consensus 978 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~--~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 978 VLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSK--MIGIISHVPEFRERI 1026 (1042)
T ss_pred CCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCC--EEEEEeCcHHHHHhh
Confidence 5899999999532222335678899999987775 799999987765544
No 229
>PRK09449 dUMP phosphatase; Provisional
Probab=23.21 E-value=3.4e+02 Score=21.53 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=36.5
Q ss_pred hHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCC-CCcceEEecCCCCCCcccHhhHHHHHHhcCC
Q 025396 68 IVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPP-GAVDVILSYCHYSINDSTLEDLLPYLKSKGV 138 (253)
Q Consensus 68 ~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi 138 (253)
...++.+.|+.|+ +| ++-.-+||-..+.....++..+. +.++.++..-......+.++-+...+++.|+
T Consensus 96 ~~~g~~~~L~~L~-~~-~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~ 165 (224)
T PRK09449 96 PLPGAVELLNALR-GK-VKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGN 165 (224)
T ss_pred cCccHHHHHHHHH-hC-CeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCC
Confidence 3567888899998 56 55444566666666666665432 1244443322222222332334445566554
No 230
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=23.18 E-value=3.9e+02 Score=22.36 Aligned_cols=53 Identities=15% Similarity=0.021 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCC
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGK 84 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~ 84 (253)
+.+.+...+..+-+.+-++++.|-|=.+..+.+.- -+..++++|-+.|+++|-
T Consensus 72 c~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~--PD~~etl~Aae~Lv~eGF 124 (247)
T PF05690_consen 72 CRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLL--PDPIETLKAAEILVKEGF 124 (247)
T ss_dssp -SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT----B-HHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcC--CChhHHHHHHHHHHHCCC
Confidence 57888888888899999999988877777654321 225789999999999985
No 231
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=23.12 E-value=5.3e+02 Score=22.82 Aligned_cols=98 Identities=16% Similarity=0.156 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCC-ccEEEecCCcHHHHHHHHHhCCCC
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGK-IRFIGITGLPLEIFTYVLDRMPPG 108 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~-i~~iGvsn~~~~~~~~~~~~~~~~ 108 (253)
.++.+.. ..+-+.|.++|+++|.+- +|.. ..+-++++..+.+.+. .+-.+.+....+.++.+.+..
T Consensus 18 ~~s~~~k-~~ia~~L~~~Gv~~IEvG---~p~~------~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g--- 84 (363)
T TIGR02090 18 SLTVEQK-VEIARKLDELGVDVIEAG---FPIA------SEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCG--- 84 (363)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEe---CCCC------ChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcC---
Confidence 3555544 445566999999999974 3321 1233666666666544 444455556777787777652
Q ss_pred CcceEEecCCC---------CCCc----ccHhhHHHHHHhcCCeEE
Q 025396 109 AVDVILSYCHY---------SIND----STLEDLLPYLKSKGVGVI 141 (253)
Q Consensus 109 ~~~~~~~q~~~---------~~~~----~~~~~~~~~~~~~gi~v~ 141 (253)
++.+.+-+.. +... ....+.+++|+++|+.+.
T Consensus 85 -~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 85 -VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred -cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 2322221121 1111 112367889999998764
No 232
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=23.06 E-value=5.3e+02 Score=22.82 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-CChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCC
Q 025396 30 DFSAERVTRSIDESLARLQLDYVDILQCHDIEF-GSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPG 108 (253)
Q Consensus 30 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~-~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~ 108 (253)
.++.+ -+-.+-+.|.++|+++|+.-..-+|.+ +.+ ....++.+++ .+...++..+++ .+...++.+++... .
T Consensus 64 ~~s~e-~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqm-ad~~ev~~~i---~~~~~~~~~~l~-~n~~die~A~~~g~-~ 136 (347)
T PLN02746 64 IVPTS-VKVELIQRLVSSGLPVVEATSFVSPKWVPQL-ADAKDVMAAV---RNLEGARFPVLT-PNLKGFEAAIAAGA-K 136 (347)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEECCCcCccccccc-ccHHHHHHHH---HhccCCceeEEc-CCHHHHHHHHHcCc-C
Confidence 34444 455666779999999999875445521 111 1123344444 343345555554 47888888887621 1
Q ss_pred CcceEE------ecCCCCCCccc----HhhHHHHHHhcCCeEEecc
Q 025396 109 AVDVIL------SYCHYSINDST----LEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 109 ~~~~~~------~q~~~~~~~~~----~~~~~~~~~~~gi~v~~~~ 144 (253)
.+.+.. ++.+.+....+ ..+++++|+++|+.+.++-
T Consensus 137 ~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 137 EVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 222221 01111111111 1268889999999886433
No 233
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=23.04 E-value=1.9e+02 Score=26.04 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=32.9
Q ss_pred CCcHHHHHHHHHhCCCCCcceEEecCCCCCCcc------cHhhHHHHHHhcCCeEEe
Q 025396 92 GLPLEIFTYVLDRMPPGAVDVILSYCHYSINDS------TLEDLLPYLKSKGVGVIS 142 (253)
Q Consensus 92 n~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~------~~~~~~~~~~~~gi~v~~ 142 (253)
|++.+.++++++..+...+..+..-+.-|..-. +..++.+.|+++||.|+-
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~ 224 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVM 224 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEe
Confidence 456778888888776555555443333333221 234788999999999973
No 234
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.98 E-value=5.3e+02 Score=22.80 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHhCCCCCcceEEec--CCCCCCcccHhhHHHHHHhcCCeEEeccccccc
Q 025396 93 LPLEIFTYVLDRMPPGAVDVILSY--CHYSINDSTLEDLLPYLKSKGVGVISASPLAMG 149 (253)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~q--~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G 149 (253)
.+++.+++.++ + ....++.. .++...-...+++.+.|+++|+-++.-..++.+
T Consensus 119 ~d~~~le~~i~---~-~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~ 173 (378)
T TIGR01329 119 TDLDKVKAALG---P-KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSP 173 (378)
T ss_pred CCHHHHHHhcC---c-CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccc
Confidence 35565555543 2 33444433 233233334568999999999999865554433
No 235
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=22.95 E-value=3.1e+02 Score=20.02 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=41.6
Q ss_pred CCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCC------cccEEEeccCCCCChhhhHHhHHHHHHHH
Q 025396 13 RNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLD------YVDILQCHDIEFGSLDQIVNETIPALQKQ 79 (253)
Q Consensus 13 R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d------~iDl~~lH~~~~~~~~~~~~~~~~aL~~l 79 (253)
|=.+.|+-|++. ....+..+++.+.++.+.+..+ -.|++++-.+...+ ....+..+.|..+
T Consensus 47 RlG~sVSKKv~~----kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~--~~~~~l~~~l~~l 113 (118)
T PRK01492 47 FLGIKVSRKLNK----KAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEE--INFSHLNYELSKI 113 (118)
T ss_pred eEEEEEecccCC----chhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCccc--CCHHHHHHHHHHH
Confidence 456778888543 2467899999999999988652 57899999885332 2244555555544
No 236
>PLN00191 enolase
Probab=22.61 E-value=6.2e+02 Score=23.39 Aligned_cols=135 Identities=13% Similarity=0.058 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEE-ec-CCcHHHHHHHHHhCCCCC
Q 025396 32 SAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIG-IT-GLPLEIFTYVLDRMPPGA 109 (253)
Q Consensus 32 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iG-vs-n~~~~~~~~~~~~~~~~~ 109 (253)
+++...+-+...+++ .++.++-.|- ..+-|+.+.++.+..+|.-.| =+ ..+++.+.++++.- .
T Consensus 296 s~~e~i~~~~~L~~~-----y~I~~IEDPl-------~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~---a 360 (457)
T PLN00191 296 SGDELIDLYKEFVSD-----YPIVSIEDPF-------DQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEK---A 360 (457)
T ss_pred CHHHHHHHHHHHhhc-----CCcEEEECCC-------CcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhC---C
Confidence 555444444444332 4566777662 234577788888888887776 22 25688888888864 4
Q ss_pred cceEEecCCCCCCcccHhhHHHHHHhcCCeEEecc-cccccc---------cCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 025396 110 VDVILSYCHYSINDSTLEDLLPYLKSKGVGVISAS-PLAMGL---------LTDNGPPEWHPASPELKSACKAAAARCKE 179 (253)
Q Consensus 110 ~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~-pl~~G~---------l~~~~~~~~~~~~~~~~~~~~~l~~la~~ 179 (253)
.+.+.+-++..-.-.+..++.+.|+++|+.++.-. ....+. +.........+...+-...+.+|-+|-++
T Consensus 361 ad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~Adlava~~~~~ik~G~~~r~er~aKyN~llriee~ 440 (457)
T PLN00191 361 CNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRIEEE 440 (457)
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHHHHHHHHhCCCccccCCCcchHHHHHHHHHHHHHHH
Confidence 45554333321111222478999999999997532 222221 00111122334444555566667777666
Q ss_pred hC
Q 025396 180 KG 181 (253)
Q Consensus 180 ~~ 181 (253)
.|
T Consensus 441 l~ 442 (457)
T PLN00191 441 LG 442 (457)
T ss_pred hc
Confidence 65
No 237
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=22.48 E-value=2.6e+02 Score=23.95 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHHHhhh------hcCCCHHHHHHHHHHhcc
Q 025396 172 AAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAASELA------LFGKDQEALTEVEAILKP 240 (253)
Q Consensus 172 ~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~~~~~------~~~l~~~~~~~i~~~~~~ 240 (253)
...+++++++....=--+.=++..+.|+.|++.+.+..|..-.++++.... -.-.|.++.++|-++-++
T Consensus 42 ~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 42 RAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred HHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 367888899876111124556777889999999999999998888874332 123577888877766654
No 238
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=22.40 E-value=1.8e+02 Score=27.51 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=55.9
Q ss_pred CcceEEecCCCCCCcc-cHhhHHHHHHhcCCeEEeccccccc----------cc--CCCCCCCCCCCCHHHHHHHHHHHH
Q 025396 109 AVDVILSYCHYSINDS-TLEDLLPYLKSKGVGVISASPLAMG----------LL--TDNGPPEWHPASPELKSACKAAAA 175 (253)
Q Consensus 109 ~~~~~~~q~~~~~~~~-~~~~~~~~~~~~gi~v~~~~pl~~G----------~l--~~~~~~~~~~~~~~~~~~~~~l~~ 175 (253)
.+.++..-+.|..... +...+.++|+++|+.+..-..++.| .. .....+.+.+..+.-....+++..
T Consensus 372 GvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~~~~s~f~~lY~~d~sl~eKIe~ 451 (557)
T PRK13505 372 GVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIEEGESNFKPLYDDEDSLEEKIEK 451 (557)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHhcCCCCCceecCCCCcHHHHHHH
Confidence 3444443445544433 3346889999999999844444322 11 011111122222222344566778
Q ss_pred HHHH-hCC-----C-HHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHH
Q 025396 176 RCKE-KGK-----N-ISKIAMQYSLSNKDISSVLVGMNSVKQVQENVT 216 (253)
Q Consensus 176 la~~-~~~-----s-~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~ 216 (253)
+|++ ||- | .++--|+-.-..++-..+++=++++.-+.++-+
T Consensus 452 IAkkIYGA~~V~~s~~A~kqL~~~e~~Gf~~lPVCmAKTqyS~s~d~~ 499 (557)
T PRK13505 452 IATKIYGAKGVEFSPKAKKQLKQIEKNGWDKLPVCMAKTQYSFSDDPK 499 (557)
T ss_pred HHHHccCCCCeeECHHHHHHHHHHHHcCCCCCCeEEEccCCCcCCChh
Confidence 8876 543 2 445556666666666556666665554444443
No 239
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=22.11 E-value=74 Score=22.43 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhhhcCCCcceEeeCCCCHHHHHHHHHHH-Hhh--hhcCCCHHHHHHHHHHhc
Q 025396 166 LKSACKAAAARCKEKGKNISKIAMQYSLSNKDISSVLVGMNSVKQVQENVTAA-SEL--ALFGKDQEALTEVEAILK 239 (253)
Q Consensus 166 ~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vl~g~~~~~~l~en~~a~-~~~--~~~~l~~~~~~~i~~~~~ 239 (253)
....++++..+++..|+.+.....+ .+.+|.. ...+|+.+.+.+++.+... ... -+.+|++...+-|++.+.
T Consensus 6 ~~~~l~El~~L~~t~g~~vv~~~~q-~~~~~~p-~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 6 FEESLEELEELAETAGYEVVGTVVQ-KRRKPDP-KTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEe-cCCCCCc-ceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 4556788999999988876432222 1223433 4689999999999988764 111 156899999999998884
No 240
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=22.10 E-value=5.1e+02 Score=22.24 Aligned_cols=73 Identities=11% Similarity=-0.029 Sum_probs=41.8
Q ss_pred HHHHHHHHcC-CccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccccccc
Q 025396 74 PALQKQKEAG-KIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMG 149 (253)
Q Consensus 74 ~aL~~l~~~G-~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G 149 (253)
+.+..+.+.- -=-+.|=|.++.+.+..+++.. ..++++......---.+..++.+.|+.+|+.++..+.+.+|
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~---~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~ 269 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPG---WRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESS 269 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcC---CCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchH
Confidence 4455554442 2234555556667777766642 44555433332111122347899999999999987666554
No 241
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=22.00 E-value=4.2e+02 Score=21.22 Aligned_cols=66 Identities=21% Similarity=0.178 Sum_probs=41.4
Q ss_pred HHHHHHhCCC--HHHHHHHhhhcCCCcceEeeC------CCCHHHHHHHHHHHHhh-------hhcCCCHHHHHHHHHHh
Q 025396 174 AARCKEKGKN--ISKIAMQYSLSNKDISSVLVG------MNSVKQVQENVTAASEL-------ALFGKDQEALTEVEAIL 238 (253)
Q Consensus 174 ~~la~~~~~s--~~q~al~~~l~~~~v~~vl~g------~~~~~~l~en~~a~~~~-------~~~~l~~~~~~~i~~~~ 238 (253)
.++|+++|+| |.--||+.+-+.|.|. +.++ .-+.+.+.+.+..-..+ --...++++++++++++
T Consensus 38 ~~La~~lgVSRtpVREAL~~L~~eGLV~-~~~~~g~~v~~~~~~~~~ei~~~R~~lE~~a~~~aa~~~t~~~l~~L~~~~ 116 (221)
T PRK11414 38 KNLAEQLGMSITPVREALLRLVSVNALS-VAPAQAFTVPEVSKRQLDEINRIRYELELMAVALAVENLTPQDLAELQELL 116 (221)
T ss_pred HHHHHHHCCCchhHHHHHHHHHHCCCEE-ecCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 5689999986 8888999998877652 1222 23555555544322111 12346888888888776
Q ss_pred cc
Q 025396 239 KP 240 (253)
Q Consensus 239 ~~ 240 (253)
+.
T Consensus 117 ~~ 118 (221)
T PRK11414 117 EK 118 (221)
T ss_pred HH
Confidence 53
No 242
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=21.78 E-value=3.1e+02 Score=25.22 Aligned_cols=68 Identities=28% Similarity=0.409 Sum_probs=43.8
Q ss_pred HHHHHHcCCccEEEecCCcHHHHHHHHHhCCC---CCcceEEecCCCCCCccc-HhhHHHHHHhcCCeEEecc
Q 025396 76 LQKQKEAGKIRFIGITGLPLEIFTYVLDRMPP---GAVDVILSYCHYSINDST-LEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 76 L~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~---~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~~~~ 144 (253)
...+-+.|-..++|....+++++++.+..++. +.+.|-+|-+... .+.. ..++++.|.++|+.++..+
T Consensus 36 VaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~-~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 36 VIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLIHSP-SDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEecccC-CCcccHHHHHHHHHHcCCCEEEec
Confidence 34556789999999999999999888775421 1122444333211 1111 2368899999999987544
No 243
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.65 E-value=2.8e+02 Score=23.62 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhh-HH--hHHHHHHHHHHcCCccEEEecCC--cHHHHHHHHH
Q 025396 29 FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQI-VN--ETIPALQKQKEAGKIRFIGITGL--PLEIFTYVLD 103 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~-~~--~~~~aL~~l~~~G~i~~iGvsn~--~~~~~~~~~~ 103 (253)
++.+++.+++-+.++.++++..-++++.+........... .- +-++.|+++.++|+ .-|-++.| +.|....++.
T Consensus 50 Pe~s~~e~~~i~~~~~~~~~~~~~E~~~~~~~~~~~~~~~v~i~~~g~e~l~~a~~~gk-gvIllt~H~GnwE~~~~~l~ 128 (298)
T PRK07920 50 PDAPAAVLDALVRAAMRSYARYWREAFRLPSMSRERLAARVRVSIEGLEHLDAALAAGR-GVVLALPHSGNWDMAGAWLV 128 (298)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhccCCHHHHHHHHhcCC-CeEEEecCCCHHHHHHHHHH
Confidence 3578999999999999999998888777765421111110 11 33567888888887 67788887 5555444444
Q ss_pred h
Q 025396 104 R 104 (253)
Q Consensus 104 ~ 104 (253)
.
T Consensus 129 ~ 129 (298)
T PRK07920 129 Q 129 (298)
T ss_pred H
Confidence 4
No 244
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=21.53 E-value=4.1e+02 Score=22.27 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=25.6
Q ss_pred hHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhC
Q 025396 68 IVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRM 105 (253)
Q Consensus 68 ~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~ 105 (253)
...++.+.|+.|++.|....| +||.+...+..+++..
T Consensus 102 ~~~g~~e~L~~Lk~~g~~l~i-vTn~~~~~~~~~l~~~ 138 (272)
T PRK13223 102 VYPGVRDTLKWLKKQGVEMAL-ITNKPERFVAPLLDQM 138 (272)
T ss_pred cCCCHHHHHHHHHHCCCeEEE-EECCcHHHHHHHHHHc
Confidence 357888999999988864444 5666666666666644
No 245
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=21.40 E-value=6e+02 Score=22.80 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=69.7
Q ss_pred CCCCHHHHHHHHHHHH----HhhCCC-cccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHH
Q 025396 29 FDFSAERVTRSIDESL----ARLQLD-YVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLD 103 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL----~~L~~d-~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~ 103 (253)
.+++.+.+....++.- ++.|-. .+|-+.+.+.. + ..+...++.+...+.| ..+-+++++++.+...++
T Consensus 105 D~m~e~el~~r~~~I~~f~~ervGe~L~LDgvair~~S-g----dpekfa~ave~v~~~~--~pv~l~s~dpevmkaaLe 177 (467)
T COG1456 105 DDMDEEELVERANEIANFRKERVGEKLKLDGVAIRNRS-G----DPEKFAEAVEKVAEAG--LPVILCSFDPEVMKAALE 177 (467)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhcceeeeeeEEEEecC-C----CHHHHHHHHHHHHhcC--CcEEEEeCCHHHHHHHHH
Confidence 3566666666555432 333322 57777777752 2 2567778888888888 689999999999999998
Q ss_pred hCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEeccc
Q 025396 104 RMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASP 145 (253)
Q Consensus 104 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~p 145 (253)
..+..++ +-|.....+..++.+.+-+.++.+.-+++
T Consensus 178 v~~dqkP------llYaAte~n~~e~~klav~y~vplvl~a~ 213 (467)
T COG1456 178 VVKDQKP------LLYAATEDNWKEFAKLAVEYKVPLVLSAF 213 (467)
T ss_pred HhhccCc------eeeecccccHHHHHHHHhhcCCcEEEecc
Confidence 7653222 22444555566888888888888876664
No 246
>TIGR03355 VI_chp_2 type VI secretion protein, EvpB/VC_A0108 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=21.35 E-value=3.1e+02 Score=25.44 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCcc---EEEecCCcHHHHHHHHHh
Q 025396 34 ERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIR---FIGITGLPLEIFTYVLDR 104 (253)
Q Consensus 34 ~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~---~iGvsn~~~~~~~~~~~~ 104 (253)
+....+||+.+.+- +| -.||.|++ ..++..|+.|..|+++-..+ .|=|-|.+.+.+.+-++.
T Consensus 51 ~~~Ia~ID~~ls~Q----l~-~ILHh~~F----Q~LEssWRGL~~Lv~~~~~~~~lkI~vLdvsk~eL~~Dl~~ 115 (473)
T TIGR03355 51 DEMIAEIDRLISRQ----LD-AILHAPEF----QQLESTWRGLKYLVDRTETRENLKIRVLNVSKEDLLKDFED 115 (473)
T ss_pred HHHHHHHHHHHHHH----HH-HHHCChHH----HHHHHHHHhHHHHHhccCCCCceEEEEEeCCHHHHHHHHHh
Confidence 44445555554432 44 34787743 34899999999999874433 566667778777766653
No 247
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=21.19 E-value=5.5e+02 Score=22.27 Aligned_cols=77 Identities=12% Similarity=-0.004 Sum_probs=50.5
Q ss_pred CCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEec
Q 025396 12 PRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGIT 91 (253)
Q Consensus 12 ~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvs 91 (253)
.++.+.++.|... +.-...+...+++..+.+|.+ +. +..+...+ .....+.++.++.+| +..|-++
T Consensus 22 ~~~~i~~v~k~~~-----~pf~~~~~~Gi~~aa~~~G~~---v~-~~~~~~~d----~~~q~~~i~~li~~~-vdgIiv~ 87 (336)
T PRK15408 22 AAERIAFIPKLVG-----VGFFTSGGNGAKEAGKELGVD---VT-YDGPTEPS----VSGQVQLINNFVNQG-YNAIIVS 87 (336)
T ss_pred CCcEEEEEECCCC-----CHHHHHHHHHHHHHHHHhCCE---EE-EECCCCCC----HHHHHHHHHHHHHcC-CCEEEEe
Confidence 4677888888753 223567888999999999853 33 33442112 345568888888765 8899998
Q ss_pred CCcHHHHHHHH
Q 025396 92 GLPLEIFTYVL 102 (253)
Q Consensus 92 n~~~~~~~~~~ 102 (253)
..+.+.+...+
T Consensus 88 ~~d~~al~~~l 98 (336)
T PRK15408 88 AVSPDGLCPAL 98 (336)
T ss_pred cCCHHHHHHHH
Confidence 87655444333
No 248
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.16 E-value=2.5e+02 Score=28.39 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhCCCc--ccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCccEEEecCCcHHH
Q 025396 36 VTRSIDESLARLQLDY--VDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEI 97 (253)
Q Consensus 36 i~~~l~~sL~~L~~d~--iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i~~iGvsn~~~~~ 97 (253)
+-=++.-+|..+-..+ +++++|.-|...=.......+.++|+.+... ++.|||-+|..+-
T Consensus 824 ~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel 885 (908)
T COG0419 824 ASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEEL 885 (908)
T ss_pred HHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHH
Confidence 4445566666666667 9999999995221123467788888888888 8899999997553
No 249
>PRK10508 hypothetical protein; Provisional
Probab=21.16 E-value=1.2e+02 Score=26.64 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCcc
Q 025396 31 FSAERVTRSIDESLARLQLDYV 52 (253)
Q Consensus 31 ~~~~~i~~~l~~sL~~L~~d~i 52 (253)
-+++.|.++|.+..+++|+|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del 307 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI 307 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE
Confidence 4789999999999999998877
No 250
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=21.06 E-value=4.9e+02 Score=22.42 Aligned_cols=108 Identities=15% Similarity=0.073 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCccEEEecCC-cHHHHHHHHHhCCCCCcceEEecCCCCCCcc-----cH-hhHHHHHHhcCCeEEeccc
Q 025396 73 IPALQKQKEAGKIRFIGITGL-PLEIFTYVLDRMPPGAVDVILSYCHYSINDS-----TL-EDLLPYLKSKGVGVISASP 145 (253)
Q Consensus 73 ~~aL~~l~~~G~i~~iGvsn~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~-----~~-~~~~~~~~~~gi~v~~~~p 145 (253)
-+-|+.+++.|. +||--|. +.+++..+++...- .-.++.+|.......- .. .-+...+++.+|.|.-+.-
T Consensus 7 ~~ll~~Ake~~y--AvpAfN~~nlE~~~AileaA~e-~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlD 83 (286)
T COG0191 7 KELLDKAKENGY--AVPAFNINNLETLQAILEAAEE-EKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLD 83 (286)
T ss_pred HHHHHHHHHcCC--ceeeeeecCHHHHHHHHHHHHH-hCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECC
Confidence 455677777776 6777674 77888777775432 1233444555432221 11 1355678888988876544
Q ss_pred ccccc----------cCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 025396 146 LAMGL----------LTDNGPPEWHPASPELKSACKAAAARCKEKGKN 183 (253)
Q Consensus 146 l~~G~----------l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 183 (253)
-+..+ +++...+.-....+++.....++.++|..+|+|
T Consensus 84 Hg~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~gvs 131 (286)
T COG0191 84 HGASFEDCKQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGVS 131 (286)
T ss_pred CCCCHHHHHHHHhcCCceEEecCCcCCHHHHHHHHHHHHHHHHHcCCc
Confidence 44221 222222222333577778888888899888765
No 251
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=21.00 E-value=6e+02 Score=22.69 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEE--ecCCCCCCcccHhhHHHHHHhcCCeEEeccccccc
Q 025396 72 TIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVIL--SYCHYSINDSTLEDLLPYLKSKGVGVISASPLAMG 149 (253)
Q Consensus 72 ~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~--~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G 149 (253)
....+......+.+.-.-+...+.+.+.+++.. ....++ +..|++..-...+++.+.|+++|+-++.-..++.|
T Consensus 105 ~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~----~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~ 180 (388)
T PRK08861 105 TYRLFNTRANKGDFKVQFVDQSDAAALDAALAK----KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTP 180 (388)
T ss_pred HHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCc----CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccc
Confidence 344443433333344444444456666555432 234443 34444433344568999999999988865555544
No 252
>PF05943 DUF877: Protein of unknown function (DUF877); InterPro: IPR010269 This family consists of a number of uncharacterised bacterial proteins. They are associated with a type VI secretion locus suggesting a possible role in virulence [].
Probab=20.94 E-value=5.3e+02 Score=23.55 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=32.5
Q ss_pred EeccCCCCChhhhHHhHHHHHHHHHHc---CCccEEEecCCcHHHHHHHHH
Q 025396 56 QCHDIEFGSLDQIVNETIPALQKQKEA---GKIRFIGITGLPLEIFTYVLD 103 (253)
Q Consensus 56 ~lH~~~~~~~~~~~~~~~~aL~~l~~~---G~i~~iGvsn~~~~~~~~~~~ 103 (253)
.||.|++ ..++..|+.|..|+++ +.--.|=+=|.+.+++.+-++
T Consensus 19 ILHhp~F----Q~LEasWRgL~~Lv~~~e~~~~~kI~lLdvs~~eL~~Dl~ 65 (423)
T PF05943_consen 19 ILHHPDF----QKLEASWRGLHYLVRRTETDENLKIKLLDVSKEELSRDLE 65 (423)
T ss_pred HHcCcHH----HHHHHHHHHHHHHHhcccCCCcceEEEEeCCHHHHHHHHH
Confidence 4788743 3489999999999976 556667777778887775444
No 253
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=20.91 E-value=5.9e+02 Score=22.57 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEE--ecCCCCCCcccHhhHHHHHHhcCCeEEeccccc
Q 025396 71 ETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVIL--SYCHYSINDSTLEDLLPYLKSKGVGVISASPLA 147 (253)
Q Consensus 71 ~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~--~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 147 (253)
.....+..+...+.+.-.-+...+.+.+.++++. ....++ +..|++..-...+++.+.|+++|+-++.-..++
T Consensus 102 ~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~----~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~ 176 (382)
T TIGR02080 102 GTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQ----KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFL 176 (382)
T ss_pred HHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCc----CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCc
Confidence 3445555555555455444444566666665542 234443 334443333445689999999998888544443
No 254
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=20.87 E-value=3.6e+02 Score=21.97 Aligned_cols=56 Identities=13% Similarity=-0.029 Sum_probs=31.7
Q ss_pred ccEEEecCCcHHHHHHHHHhCCCCCcceEEec-CCCCCCc----ccHhhHHHHHHhcC-CeEEecc
Q 025396 85 IRFIGITGLPLEIFTYVLDRMPPGAVDVILSY-CHYSIND----STLEDLLPYLKSKG-VGVISAS 144 (253)
Q Consensus 85 i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q-~~~~~~~----~~~~~~~~~~~~~g-i~v~~~~ 144 (253)
=.-||+|+|+.+++.++.+. ..+.+..- +..+... +..-+.+.+.++.. +.+++.+
T Consensus 104 ~~iIG~S~h~~eea~~A~~~----g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIG 165 (211)
T COG0352 104 GLIIGLSTHDLEEALEAEEL----GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIG 165 (211)
T ss_pred CCEEEeecCCHHHHHHHHhc----CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEc
Confidence 34799999999998888765 23333211 1112111 11125566666666 7777654
No 255
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=20.77 E-value=4.8e+02 Score=21.56 Aligned_cols=98 Identities=17% Similarity=0.070 Sum_probs=53.2
Q ss_pred HHhHHHHHHHHHHcCCccEEEecC----CcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEecc
Q 025396 69 VNETIPALQKQKEAGKIRFIGITG----LPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISAS 144 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~i~~iGvsn----~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 144 (253)
.++..++|..+. +.+|.... +..+.++.+.+..+. ... .+-+ .++.++++...-+.|..++..+
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl---~~~----~PLW-g~d~~ell~e~~~~Gf~~~Iv~ 142 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGL---KVY----APLW-GRDPEELLEEMVEAGFEAIIVA 142 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCC---EEe----eccc-CCCHHHHHHHHHHcCCeEEEEE
Confidence 445555555555 66665543 355666666665532 111 1111 1223577888888888887777
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCH
Q 025396 145 PLAMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGKNI 184 (253)
Q Consensus 145 pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~ 184 (253)
.-+.|+-..- . ..+-+ .+..+.+..+.+++|+.|
T Consensus 143 Vsa~gL~~~~-l--Gr~i~---~~~~e~l~~l~~~ygi~~ 176 (223)
T COG2102 143 VSAEGLDESW-L--GRRID---REFLEELKSLNRRYGIHP 176 (223)
T ss_pred EeccCCChHH-h--CCccC---HHHHHHHHHHHHhcCCCc
Confidence 7776653110 0 00111 134566788888888876
No 256
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=20.77 E-value=2.4e+02 Score=21.51 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=27.4
Q ss_pred CCCCcEEEEeccccccCCCCCCHHHHHHHHHHHHHhhCC
Q 025396 11 VPRNEYIVSTKCGRYVDGFDFSAERVTRSIDESLARLQL 49 (253)
Q Consensus 11 ~~R~~~~I~tK~~~~~~~~~~~~~~i~~~l~~sL~~L~~ 49 (253)
++..+++|..|-+. ...+...+.+++...|++++.
T Consensus 83 l~~~DiVviar~~~----~~~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 83 LAPGDYVVVARSAA----AKASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred cCCCCEEEEEeCCc----ccCCHHHHHHHHHHHHHHhCc
Confidence 34457787777765 467899999999999999865
No 257
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.76 E-value=5e+02 Score=21.62 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=28.2
Q ss_pred hhHHHHHHhcCCeEEecccccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 025396 127 EDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPASPELKSACKAAAARCKEKGK 182 (253)
Q Consensus 127 ~~~~~~~~~~gi~v~~~~pl~~G~l~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~ 182 (253)
...++.|+..|..++.+... ... +..............+.++.++|+++|+
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~--~~~---~~~~~~~~~~~~~~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLAGY--DVY---YEEHDEETRRRFREGLKEAVELAARAQV 147 (279)
T ss_pred HHHHHHHHHhCCCEEEecCc--ccc---cCcCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36788899999988865321 100 0000111123344556667777888777
No 258
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.63 E-value=2.8e+02 Score=18.65 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHhccCCCCCCCC
Q 025396 207 SVKQVQENVTAASELALFGKDQEALTEVEAILKPVKNQTWPS 248 (253)
Q Consensus 207 ~~~~l~en~~a~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~ 248 (253)
..+++.+..+-+.++ ++-++.+++++ .-.+|.|+.
T Consensus 40 d~~~L~~L~~~A~rm------~~RI~tLE~IL-Dae~P~WR~ 74 (75)
T PRK09458 40 EQQRLAQLTEKAERM------RERIQALEAIL-DAEHPNWRN 74 (75)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHH-cccCCCcCC
Confidence 334455655555554 66788888888 677788875
No 259
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=20.63 E-value=3.2e+02 Score=24.55 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHcCCc---cEEEecCCcHHHHHHHHHhCCCCCcceEEecCCCCCCcccHhhHHHHHHhcCCeEEec
Q 025396 71 ETIPALQKQKEAGKI---RFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISA 143 (253)
Q Consensus 71 ~~~~aL~~l~~~G~i---~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~~~ 143 (253)
+.++.+.++.+.-.+ -.-|-+.++...+..+++.. .+++++.-+...---.+..++.+.|+.+|+.+..+
T Consensus 246 ~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~---a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 246 DDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMG---CIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred ccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcC---CCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 456777788777542 23377778889999998863 45665432222111123347899999999998765
No 260
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=20.47 E-value=4.3e+02 Score=22.17 Aligned_cols=54 Identities=17% Similarity=0.030 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCC
Q 025396 29 FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGK 84 (253)
Q Consensus 29 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~ 84 (253)
-+++.+......+-+.+-++++.+-+=.+-...+.- -+..+++++-+.|+++|=
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLl--PD~~etl~Aae~Lv~eGF 131 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLL--PDPIETLKAAEQLVKEGF 131 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccC--CChHHHHHHHHHHHhCCC
Confidence 357778777888888999999999988887775432 125789999999999985
No 261
>PF06340 TcpF: Vibrio cholerae toxin co-regulated pilus biosynthesis protein F; InterPro: IPR009405 This family consists of several Vibrio cholerae toxin co-regulated pilus biosynthesis protein F (TcpF) sequences. TcpF is known to be a secreted virulence protein but its exact function is unknown [].; PDB: 3OC5_A 3OC8_A.
Probab=20.46 E-value=79 Score=26.55 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=30.6
Q ss_pred CCHHHHHHHHH----HHHHhhCCCcccEEEeccCCCCChhhhHHhHHHHHHHHHHcCCc
Q 025396 31 FSAERVTRSID----ESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKI 85 (253)
Q Consensus 31 ~~~~~i~~~l~----~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~aL~~l~~~G~i 85 (253)
.+++.+.+-+. ..|++| |+|+|+-... .||+-+..+.++.|-.|-++|+.
T Consensus 72 Rt~Edfq~~L~sg~y~~lekl---Yid~YLaQ~t--yDW~IPT~dQiqtLvnlak~g~L 125 (311)
T PF06340_consen 72 RTKEDFQKRLNSGDYGGLEKL---YIDYYLAQTT--YDWHIPTRDQIQTLVNLAKDGKL 125 (311)
T ss_dssp S-HHHHHHHHHTT-HHHHHHH---TGGGT--TT---S-EE---HHHHHHHHHHHHTT-S
T ss_pred cCHHHHHHHHhccchhhHHHh---hhhhhhcccc--ccccCCCHHHHHHHHhHHhccch
Confidence 34555555543 356666 9999988765 47888889999999999999983
No 262
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=20.43 E-value=3.1e+02 Score=20.14 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHcCCccEEEecCC
Q 025396 71 ETIPALQKQKEAGKIRFIGITGL 93 (253)
Q Consensus 71 ~~~~aL~~l~~~G~i~~iGvsn~ 93 (253)
..+..|.+..+.|.+..|=|...
T Consensus 52 p~l~~ll~~~~~g~~~~ivv~~~ 74 (148)
T smart00857 52 PGLQRLLADLRAGDIDVLVVYKL 74 (148)
T ss_pred HHHHHHHHHHHcCCCCEEEEecc
Confidence 45666666667777766666654
No 263
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=20.08 E-value=4e+02 Score=23.87 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=48.0
Q ss_pred HHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhCCCCCcceEEecCCC--CCCcccHhhHHHHHHhcC-CeEEeccc
Q 025396 69 VNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRMPPGAVDVILSYCHY--SINDSTLEDLLPYLKSKG-VGVISASP 145 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~~~~~~~~~~~q~~~--~~~~~~~~~~~~~~~~~g-i~v~~~~p 145 (253)
..++.+.++.+....-|...=+-..+.+.++++++. ....++.+..- .+.-.+.+.+.+.|+++| +.++.-.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~----~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT 179 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRP----NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNT 179 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCT----TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccc----cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecc
Confidence 456777777655555555433344466777766664 34555555443 344455568999999999 99998777
Q ss_pred cccccc
Q 025396 146 LAMGLL 151 (253)
Q Consensus 146 l~~G~l 151 (253)
++...+
T Consensus 180 ~atp~~ 185 (386)
T PF01053_consen 180 FATPYN 185 (386)
T ss_dssp TTHTTT
T ss_pred ccceee
Confidence 776543
No 264
>PRK11587 putative phosphatase; Provisional
Probab=20.03 E-value=3.8e+02 Score=21.33 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=20.9
Q ss_pred HHhHHHHHHHHHHcCCccEEEecCCcHHHHHHHHHhC
Q 025396 69 VNETIPALQKQKEAGKIRFIGITGLPLEIFTYVLDRM 105 (253)
Q Consensus 69 ~~~~~~aL~~l~~~G~i~~iGvsn~~~~~~~~~~~~~ 105 (253)
..++.+.|+.|+++|.--+| +||-+.......++..
T Consensus 85 ~pg~~e~L~~L~~~g~~~~i-vTn~~~~~~~~~l~~~ 120 (218)
T PRK11587 85 LPGAIALLNHLNKLGIPWAI-VTSGSVPVASARHKAA 120 (218)
T ss_pred CcCHHHHHHHHHHcCCcEEE-EcCCCchHHHHHHHhc
Confidence 56788888888888853333 3444334444444433
Done!