BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025397
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09MP3|R51A2_HUMAN RAD51-associated protein 2 OS=Homo sapiens GN=RAD51AP2 PE=1 SV=1
Length = 1159
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 41 ENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELK 100
EN SSS+ +S QN S + S D T + +F D SK++S Y+ IA +
Sbjct: 224 ENNISSSVLKISKSQNQPSLEIAKPSYFRDSGTISVPQFPMDLNSKMSSVYLKEIAKKKN 283
Query: 101 D 101
D
Sbjct: 284 D 284
>sp|A8EYU2|PNP_RICCK Polyribonucleotide nucleotidyltransferase OS=Rickettsia canadensis
(strain McKiel) GN=pnp PE=3 SV=1
Length = 747
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 70 DDVTFRIKEFDRDHASKLASDYITAIADELKDDPL----VVCVLDGNMLKLFLGNEDDFT 125
DD T + DRD K+ASD I AIA E + + V +LD +LGN+D F
Sbjct: 592 DDGTVSVYAADRDKL-KIASDKIKAIAIEPEIGEIFNGTVTKILDSGAFINYLGNKDGFV 650
Query: 126 MLAENLFADLDT 137
++E +DT
Sbjct: 651 HISEISEERIDT 662
>sp|Q8R9V4|ACKA_THETN Acetate kinase OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=ackA PE=3 SV=1
Length = 401
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 175 LNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALADKHIIIIPNIKIIDGSKLRMV 232
+ND L H AEG+E++ + + ++ +Q +++ L DK I +I ++K ID R+V
Sbjct: 36 INDSLLTHQAEGKEKVKIQRDMKNHKEAIQLVLEVLVDKEIGVIKDMKEIDAVGHRVV 93
>sp|Q9ZD43|PNP_RICPR Polyribonucleotide nucleotidyltransferase OS=Rickettsia prowazekii
(strain Madrid E) GN=pnp PE=3 SV=1
Length = 745
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 70 DDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKL--------FLGNE 121
DD T I DRD K+A D I AIA E P + + +G ++K+ +LGN+
Sbjct: 592 DDGTVSIYASDRDKI-KIALDKIKAIAVE----PEIGEIFNGTVMKVLDSGAFINYLGNK 646
Query: 122 DDFTMLAENLFADLD 136
D F ++E A +D
Sbjct: 647 DGFVHISEISDARID 661
>sp|C3M9X0|META_RHISN Homoserine O-succinyltransferase OS=Rhizobium sp. (strain NGR234)
GN=metA PE=3 SV=1
Length = 307
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 49 FGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCV 108
FG+ QNLK +++ +++G DD + + + + D + ++ ++ + VC+
Sbjct: 165 FGVYRHQNLKPSSV-YLNGFSDDFAVPVSRWTEVRRADI--DRVPSLEILMESKEMGVCL 221
Query: 109 L---DGNMLKLFLGNEDDFTMLAENLFADLD 136
+ GN L +F E D T L++ F D+D
Sbjct: 222 VHEKKGNRLYMFNHVEYDSTSLSDEYFRDVD 252
>sp|A8F1P3|PNP_RICM5 Polyribonucleotide nucleotidyltransferase OS=Rickettsia massiliae
(strain Mtu5) GN=pnp PE=3 SV=1
Length = 745
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 17/78 (21%)
Query: 64 HISGS----DDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKL--- 116
ISG+ DD T I DRD K+A D I AIA E P + + +G ++K+
Sbjct: 582 EISGAKIDISDDGTVSIYASDRDKL-KVALDKIKAIAVE----PEIGEIFNGTVMKVLDS 636
Query: 117 -----FLGNEDDFTMLAE 129
+LGN+D F ++E
Sbjct: 637 GAFINYLGNKDGFVHISE 654
>sp|Q68WN1|PNP_RICTY Polyribonucleotide nucleotidyltransferase OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=pnp PE=3 SV=1
Length = 745
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 13/68 (19%)
Query: 70 DDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKL--------FLGNE 121
DD T + DRD K+A D I AIA E P + + +G ++K+ +LGN+
Sbjct: 592 DDGTVSVYAADRDKI-KVALDKIKAIAVE----PEIGEIFNGTVMKVLDSGAFINYLGNK 646
Query: 122 DDFTMLAE 129
D F ++E
Sbjct: 647 DGFVHISE 654
>sp|Q1RIG0|PNP_RICBR Polyribonucleotide nucleotidyltransferase OS=Rickettsia bellii
(strain RML369-C) GN=pnp PE=3 SV=1
Length = 744
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 70 DDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKL--------FLGNE 121
DD T I D+D K+A D + AIA E P + V +G ++K+ +LGN+
Sbjct: 592 DDGTVSIYASDKDKL-KVALDKVKAIAIE----PEIGEVFNGTVMKILDSGAFVNYLGNK 646
Query: 122 DDFTMLAENLFADLDTEDEGKVCK 145
D F ++E A+ E G V K
Sbjct: 647 DGFVHISE--IAEERIESVGSVLK 668
>sp|A8GWV2|PNP_RICB8 Polyribonucleotide nucleotidyltransferase OS=Rickettsia bellii
(strain OSU 85-389) GN=pnp PE=3 SV=1
Length = 744
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 70 DDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKL--------FLGNE 121
DD T I D+D K+A D + AIA E P + V +G ++K+ +LGN+
Sbjct: 592 DDGTVSIYASDKDKL-KVALDKVKAIAIE----PEIGEVFNGTVMKILDSGAFVNYLGNK 646
Query: 122 DDFTMLAENLFADLDTEDEGKVCK 145
D F ++E A+ E G V K
Sbjct: 647 DGFVHISE--IAEERIESVGSVLK 668
>sp|B0K9Y6|ACKA_THEP3 Acetate kinase OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=ackA PE=3 SV=1
Length = 401
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 175 LNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALADKHIIIIPNIKIIDGSKLRMV 232
+ND L H EG++++ + + ++ +Q +++AL DK I I+ ++K ID R+V
Sbjct: 36 INDSLLTHQVEGKDKIKIQKDMKNHKEAIQIVLEALVDKEIGILKDMKEIDAVGHRVV 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,098,294
Number of Sequences: 539616
Number of extensions: 3871417
Number of successful extensions: 10904
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 10897
Number of HSP's gapped (non-prelim): 21
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)