Your job contains 1 sequence.
>025398
MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE
TARALEQIEAKAKRSYQKDLANQEARNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDPK
SGFYYSDAIGNWVTQEEAYAAIPASLGSKHRPTMKHPFPAFGGGSIVENKDSAKSQNGPA
RGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAKPVSKEEAAAIKAREAAKKRVE
EREKQLLGLYHSQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025398
(253 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2012222 - symbol:AT1G49590 species:3702 "Arabi... 578 4.2e-56 1
UNIPROTKB|O75554 - symbol:WBP4 "WW domain-binding protein... 162 1.9e-13 2
UNIPROTKB|Q5F457 - symbol:WBP4 "WW domain-binding protein... 159 2.6e-13 2
RGD|620033 - symbol:Wbp4 "WW domain binding protein 4" sp... 162 3.8e-13 2
UNIPROTKB|F1NXG2 - symbol:WBP4 "WW domain-binding protein... 159 5.2e-13 2
MGI|MGI:109568 - symbol:Wbp4 "WW domain binding protein 4... 159 6.6e-13 2
FB|FBgn0031287 - symbol:CG4291 species:7227 "Drosophila m... 168 3.8e-12 1
UNIPROTKB|Q17QQ6 - symbol:WBP4 "Uncharacterized protein" ... 163 2.1e-11 1
UNIPROTKB|F1PCW3 - symbol:WBP4 "Uncharacterized protein" ... 162 2.3e-11 1
ZFIN|ZDB-GENE-050522-342 - symbol:zgc:112384 "zgc:112384"... 149 2.9e-09 2
WB|WBGene00010159 - symbol:F56G4.4 species:6239 "Caenorha... 132 2.4e-06 1
UNIPROTKB|E2QUP3 - symbol:RBM5 "Uncharacterized protein" ... 133 3.8e-06 1
UNIPROTKB|F1SPQ8 - symbol:RBM5 "Uncharacterized protein" ... 130 9.0e-06 1
UNIPROTKB|P52756 - symbol:RBM5 "RNA-binding protein 5" sp... 129 1.2e-05 1
MGI|MGI:1933204 - symbol:Rbm5 "RNA binding motif protein ... 127 2.1e-05 1
RGD|1305059 - symbol:Rbm5 "RNA binding motif protein 5" s... 122 8.3e-05 1
UNIPROTKB|Q1RMU5 - symbol:RBM5 "RNA-binding protein 5" sp... 118 0.00025 1
FB|FBgn0031319 - symbol:CG4896 species:7227 "Drosophila m... 118 0.00031 1
UNIPROTKB|E1BXK5 - symbol:E1BXK5 "Uncharacterized protein... 117 0.00032 1
FB|FBgn0031318 - symbol:CG4887 species:7227 "Drosophila m... 117 0.00033 2
UNIPROTKB|A4IGK4 - symbol:rbm5 "RNA-binding protein 5" sp... 117 0.00034 1
UNIPROTKB|A0JMV4 - symbol:rbm5-a "RNA-binding protein 5-A... 116 0.00043 1
DICTYBASE|DDB_G0286361 - symbol:DDB_G0286361 species:4468... 108 0.00063 2
UNIPROTKB|Q6DDU9 - symbol:rbm5-b "RNA-binding protein 5-B... 114 0.00066 1
>TAIR|locus:2012222 [details] [associations]
symbol:AT1G49590 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000690 InterPro:IPR013085 Pfam:PF06220 PROSITE:PS50171
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:NOG125287 KO:K13220
EMBL:BT010196 IPI:IPI00524733 RefSeq:NP_175382.1 UniGene:At.28747
ProteinModelPortal:Q7XA66 IntAct:Q7XA66 PRIDE:Q7XA66
EnsemblPlants:AT1G49590.1 GeneID:841383 KEGG:ath:AT1G49590
TAIR:At1g49590 HOGENOM:HOG000241754 InParanoid:Q7XA66 OMA:DFCKIYI
PhylomeDB:Q7XA66 ProtClustDB:CLSN2682675 Genevestigator:Q7XA66
Uniprot:Q7XA66
Length = 242
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 118/221 (53%), Positives = 148/221 (66%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
MTEYWVSQGNKWC+FCKI+I NNP+SIRNHDLG+RH+E V KKL DMR
Sbjct: 1 MTEYWVSQGNKWCEFCKIWIQNNPTSIRNHDLGKRHRECVDKKLTDMRERSAAKDKELKK 60
Query: 61 XXXXLEQIEAKAKRSYQKDLAN-QEARNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDP 119
L+QIEAKA RSYQKD+A Q+ +N + W D SGYYYN++NGL+YD
Sbjct: 61 NEKLLQQIEAKATRSYQKDIATAQQVAKANGAPEDGTSDWMLDSASGYYYNQTNGLHYDS 120
Query: 120 KSGFYYSDAIGNWVTQEEAYAAIPASLGSKHRPTMKHPFPAFGGGSIVENKDSAKSQNGP 179
+SGFYYSD+IG+WVTQ+EAYAA+ S G+K P +K P + G G V G
Sbjct: 121 QSGFYYSDSIGHWVTQDEAYAAVKTSSGTKV-PLVKKPVSSSGAGPSV----------GK 169
Query: 180 ARGPVVSSSLNPMRSVKGAPSSLAVG--KRKREDNKLKKMA 218
G +V++SLNP R+VKGA SS+ +G KRKR+D K KK++
Sbjct: 170 PPGRLVTASLNPKRAVKGAASSVDLGNNKRKRQDEKPKKVS 210
>UNIPROTKB|O75554 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0070064 "proline-rich region binding"
evidence=IPI] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0005886 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0005681 GO:GO:0003676 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0045292 EMBL:AL157877 eggNOG:COG5104
CTD:11193 HOGENOM:HOG000067962 HOVERGEN:HBG053152 KO:K13220
OrthoDB:EOG4R7VBT EMBL:AF071185 EMBL:BC104879 EMBL:BC108310
IPI:IPI00026957 RefSeq:NP_009118.1 UniGene:Hs.411300 PDB:2DK1
PDB:2JXW PDBsum:2DK1 PDBsum:2JXW ProteinModelPortal:O75554
SMR:O75554 MINT:MINT-127038 STRING:O75554 PhosphoSite:O75554
PaxDb:O75554 PRIDE:O75554 Ensembl:ENST00000379487 GeneID:11193
KEGG:hsa:11193 UCSC:uc001uxt.3 GeneCards:GC13P041635
HGNC:HGNC:12739 HPA:HPA038965 MIM:604981 neXtProt:NX_O75554
PharmGKB:PA37350 InParanoid:O75554 OMA:HEEVDLE PhylomeDB:O75554
EvolutionaryTrace:O75554 GenomeRNAi:11193 NextBio:42605
ArrayExpress:O75554 Bgee:O75554 CleanEx:HS_WBP4
Genevestigator:O75554 GermOnline:ENSG00000120688 Uniprot:O75554
Length = 376
Score = 162 (62.1 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
M +YW SQ K+CD+CK +I++N S+ H+ G+ HKENV K++++++
Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVAKRISEIKQKSLDKAKEEEK 60
Query: 61 XXXXLEQIEAKAKRSYQKDL 80
+EA A ++YQ+DL
Sbjct: 61 ASKEFAAMEAAALKAYQEDL 80
Score = 39 (18.8 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 184 VVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKK 216
++ S+ P+ S S+ K K+E K KK
Sbjct: 89 ILEPSITPVTSTIPPTSTSNQQKEKKEKKKRKK 121
>UNIPROTKB|Q5F457 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0008380 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AJ851443 IPI:IPI00584023
RefSeq:NP_001025995.1 UniGene:Gga.7915 ProteinModelPortal:Q5F457
STRING:Q5F457 GeneID:418829 KEGG:gga:418829 CTD:11193
eggNOG:NOG125287 HOGENOM:HOG000067962 HOVERGEN:HBG053152
InParanoid:Q5F457 KO:K13220 OrthoDB:EOG4R7VBT NextBio:20821967
Uniprot:Q5F457
Length = 398
Score = 159 (61.0 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
M +YW SQ K+CD+CK +I++N SI H+ G+ HKENV K+++++R
Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSIDFHERGKNHKENVAKRISEIRKKSMEKAKEEEN 60
Query: 61 XXXXLEQIEAKAKRSYQKDL 80
+E A ++YQ+DL
Sbjct: 61 MSKEFAAMEEAAMKAYQEDL 80
Score = 42 (19.8 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 182 GPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAK 219
GP SS+LN +S+ K K+E + KK +
Sbjct: 91 GP--SSTLNKTQSITAEGKEKKEKKEKKEKKEKKKKTR 126
Score = 39 (18.8 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 102 DGTSGYYYNESNGLY-YDPKSGFYYS 126
DG + YYYN G+ ++ GF S
Sbjct: 188 DGHT-YYYNTQTGVSTWEKPDGFVSS 212
Score = 37 (18.1 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 73 KRSYQKDLANQEARNSNAVALNDHEKW 99
KR + D +++ ++ A L+ + KW
Sbjct: 252 KRKGENDEESEKEKSPKAKKLSPYGKW 278
>RGD|620033 [details] [associations]
symbol:Wbp4 "WW domain binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISO;ISS] [GO:0070064
"proline-rich region binding" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 RGD:620033 GO:GO:0005886 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0005681 GO:GO:0003676 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0045292 CTD:11193 eggNOG:NOG125287
HOGENOM:HOG000067962 HOVERGEN:HBG053152 KO:K13220 OrthoDB:EOG4R7VBT
OMA:HEEVDLE GeneTree:ENSGT00390000013956 EMBL:BC089052
IPI:IPI00554046 RefSeq:NP_446218.1 UniGene:Rn.144631
ProteinModelPortal:Q5HZF2 SMR:Q5HZF2 STRING:Q5HZF2
Ensembl:ENSRNOT00000015605 GeneID:114765 KEGG:rno:114765
UCSC:RGD:620033 InParanoid:Q5HZF2 NextBio:618853
Genevestigator:Q5HZF2 GermOnline:ENSRNOG00000011678 Uniprot:Q5HZF2
Length = 374
Score = 162 (62.1 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
M +YW SQ K+CD+CK +I++N S+ H+ G+ HKENV +K+++++
Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARKISEIKQKSLDKAKEEEK 60
Query: 61 XXXXLEQIEAKAKRSYQKDL 80
+EA A ++YQ+DL
Sbjct: 61 ASKEFAAMEAAALKAYQEDL 80
Score = 36 (17.7 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 163 GGSIVENKDSAK 174
GG ++ +KDS K
Sbjct: 200 GGDVLSSKDSEK 211
>UNIPROTKB|F1NXG2 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA] [GO:0070064
"proline-rich region binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR001202 InterPro:IPR003604 InterPro:IPR013085
Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50171 SMART:SM00451 SMART:SM00456 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0045292
IPI:IPI00584023 OMA:HEEVDLE GeneTree:ENSGT00390000013956
EMBL:AADN02005497 Ensembl:ENSGALT00000027397 Uniprot:F1NXG2
Length = 398
Score = 159 (61.0 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
M +YW SQ K+CD+CK +I++N SI H+ G+ HKENV K+++++R
Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSIDFHERGKNHKENVAKRISEIRKKSMEKAKEEEN 60
Query: 61 XXXXLEQIEAKAKRSYQKDL 80
+E A ++YQ+DL
Sbjct: 61 MSKEFAAMEEAAMKAYQEDL 80
Score = 39 (18.8 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 102 DGTSGYYYNESNGLY-YDPKSGFYYS 126
DG + YYYN G+ ++ GF S
Sbjct: 188 DGHT-YYYNTQTGVSTWEKPDGFVSS 212
Score = 39 (18.8 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 189 LNPMRSVKGAPSSLAVGKRKREDNKLKKMAK 219
+ P ++ S+ A GK K+E K KK K
Sbjct: 90 VGPSSTLNKTQSNAAEGKEKKE-KKEKKEKK 119
Score = 37 (18.1 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 73 KRSYQKDLANQEARNSNAVALNDHEKW 99
KR + D +++ ++ A L+ + KW
Sbjct: 252 KRKGENDEESEKEKSPKAKKLSPYGKW 278
Score = 36 (17.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 182 GPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAK 219
GP SS+LN +S K K+E + KK +
Sbjct: 91 GP--SSTLNKTQSNAAEGKEKKEKKEKKEKKEKKKKTR 126
>MGI|MGI:109568 [details] [associations]
symbol:Wbp4 "WW domain binding protein 4" species:10090 "Mus
musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=ISO] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 EMBL:AF071184 MGI:MGI:109568 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 EMBL:CH466535 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0045292 CTD:11193 eggNOG:NOG125287 HOGENOM:HOG000067962
HOVERGEN:HBG053152 KO:K13220 OrthoDB:EOG4R7VBT OMA:HEEVDLE
EMBL:AK019160 EMBL:AK135215 EMBL:AK160559 EMBL:AK162009
EMBL:BC034851 IPI:IPI00117019 PIR:S64714 RefSeq:NP_061235.2
UniGene:Mm.476813 ProteinModelPortal:Q61048 SMR:Q61048
STRING:Q61048 PhosphoSite:Q61048 PaxDb:Q61048 PRIDE:Q61048
Ensembl:ENSMUST00000022601 GeneID:22380 KEGG:mmu:22380
GeneTree:ENSGT00390000013956 InParanoid:Q3TUU8 ChiTaRS:WBP4
NextBio:302741 Bgee:Q61048 CleanEx:MM_WBP4 Genevestigator:Q61048
GermOnline:ENSMUSG00000022023 Uniprot:Q61048
Length = 376
Score = 159 (61.0 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
M +YW SQ K+CD+CK +I++N S+ H+ G+ HKENV +++++++
Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARRISEIKQKSLDKAKEEEK 60
Query: 61 XXXXLEQIEAKAKRSYQKDL 80
+EA A ++YQ+DL
Sbjct: 61 ASKEFAAMEAAALKAYQEDL 80
Score = 37 (18.1 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 163 GGSIVENKDSAK 174
GG ++ +KDS K
Sbjct: 202 GGDVLSSKDSGK 213
>FB|FBgn0031287 [details] [associations]
symbol:CG4291 species:7227 "Drosophila melanogaster"
[GO:0017058 "FH1 domain binding" evidence=ISS] [GO:0005686 "U2
snRNP" evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein
complex" evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] InterPro:IPR000690
InterPro:IPR001202 InterPro:IPR003604 InterPro:IPR013085
Pfam:PF00397 Pfam:PF06220 PROSITE:PS50020 PROSITE:PS50171
SMART:SM00451 SMART:SM00456 EMBL:AE014134 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0071011 GO:GO:0000398 GO:GO:0005686 HSSP:Q61051 KO:K13220
GeneTree:ENSGT00390000013956 FlyBase:FBgn0031287 EMBL:BT133090
RefSeq:NP_608551.1 UniGene:Dm.19758 SMR:Q9VPU4
EnsemblMetazoa:FBtr0078034 GeneID:33264 KEGG:dme:Dmel_CG4291
UCSC:CG4291-RA InParanoid:Q9VPU4 OMA:YYWNVKT GenomeRNAi:33264
NextBio:782737 Uniprot:Q9VPU4
Length = 338
Score = 168 (64.2 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
MTEYW S K+CDFCK ++S+N +S+ H+ G+RHK NV K++ D+
Sbjct: 1 MTEYWKSNERKFCDFCKCWLSDNKASVAFHESGKRHKMNVAKRITDISRNSEKSERERQK 60
Query: 61 XXXXLEQIEAKAKRSYQKDL---ANQEARNSNAV 91
+ ++E A +SY +D+ + AR+ N V
Sbjct: 61 MDAEIRKMEEAAMKSYAQDVHSRGDMTARSINTV 94
>UNIPROTKB|Q17QQ6 [details] [associations]
symbol:WBP4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR001202 InterPro:IPR003604 InterPro:IPR013085
Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50171 SMART:SM00451 SMART:SM00456 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0045292
CTD:11193 eggNOG:NOG125287 HOGENOM:HOG000067962 HOVERGEN:HBG053152
KO:K13220 OrthoDB:EOG4R7VBT OMA:HEEVDLE
GeneTree:ENSGT00390000013956 EMBL:DAAA02032752 EMBL:DAAA02032753
EMBL:BC118233 IPI:IPI00700299 RefSeq:NP_001068719.1
UniGene:Bt.21949 SMR:Q17QQ6 STRING:Q17QQ6
Ensembl:ENSBTAT00000022129 GeneID:506275 KEGG:bta:506275
InParanoid:Q17QQ6 NextBio:20867534 Uniprot:Q17QQ6
Length = 395
Score = 163 (62.4 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
M +YW SQ K+CD+CK +I++N SI H+ G+ HKENV K++++++
Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSIEFHERGKNHKENVAKRISEIKQKSLEKAKEEEK 60
Query: 61 XXXXLEQIEAKAKRSYQKDL 80
+EA A ++YQ+DL
Sbjct: 61 ASKEFAAMEAAALKAYQEDL 80
>UNIPROTKB|F1PCW3 [details] [associations]
symbol:WBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 CTD:11193 KO:K13220
OMA:HEEVDLE GeneTree:ENSGT00390000013956 EMBL:AAEX03013176
RefSeq:XP_534136.2 Ensembl:ENSCAFT00000007742 GeneID:476935
KEGG:cfa:476935 Uniprot:F1PCW3
Length = 371
Score = 162 (62.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
M +YW SQ K+CD+CK +I++N S+ H+ G+ HKENV K++++++
Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVAKRISEIKQKSLDKAKEEEK 60
Query: 61 XXXXLEQIEAKAKRSYQKDL 80
+EA A ++YQ+DL
Sbjct: 61 ASKEFAAMEAAALKAYQEDL 80
>ZFIN|ZDB-GENE-050522-342 [details] [associations]
symbol:zgc:112384 "zgc:112384" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000690 InterPro:IPR001202 InterPro:IPR003604
InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451 SMART:SM00456
ZFIN:ZDB-GENE-050522-342 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 HOVERGEN:HBG053152
KO:K13220 EMBL:BC095798 IPI:IPI00483634 RefSeq:NP_001018530.1
UniGene:Dr.78282 ProteinModelPortal:Q501Z8 GeneID:553723
KEGG:dre:553723 InParanoid:Q501Z8 NextBio:20880452 Uniprot:Q501Z8
Length = 412
Score = 149 (57.5 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
M +YW SQ K+C +CK +I++N S+ H+ G+ HKENV K+ ++R
Sbjct: 1 MADYWKSQPRKFCQYCKCWIADNKPSVEFHERGKNHKENVAAKIQEIRKKSVAKAKQEKK 60
Query: 61 XXXXLEQIEAKAKRSYQKDL 80
+E A+++Y++DL
Sbjct: 61 MSKDFAAMEDAAQKAYEEDL 80
Score = 35 (17.4 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 102 DGTSGYYYNESNG 114
DG + YYYN +G
Sbjct: 185 DGFT-YYYNTESG 196
>WB|WBGene00010159 [details] [associations]
symbol:F56G4.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR003604 SMART:SM00451
GO:GO:0040007 GO:GO:0002119 GO:GO:0008270 GO:GO:0040011
GO:GO:0040018 GO:GO:0003676 GO:GO:0040035 EMBL:Z81552 KO:K13220
GeneTree:ENSGT00390000013956 PIR:T22785 RefSeq:NP_492912.1
ProteinModelPortal:Q9XUY1 SMR:Q9XUY1 PaxDb:Q9XUY1
EnsemblMetazoa:F56G4.4 GeneID:173027 KEGG:cel:CELE_F56G4.4
UCSC:F56G4.4 CTD:173027 WormBase:F56G4.4 eggNOG:NOG301424
InParanoid:Q9XUY1 OMA:FDNSTRW NextBio:877973 Uniprot:Q9XUY1
Length = 470
Score = 132 (51.5 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
M E WVS G ++CD CK++ NN +S +HD G+RHK +Q+++ +
Sbjct: 1 MAEQWVSTGKRFCDICKVWFGNNRASQDHHDRGERHKAMLQQRIRETMQKGKKQELADMK 60
Query: 61 XXXXLEQIEAKAKRSYQKD 79
L ++EA A S ++
Sbjct: 61 LNGTLAKMEAAAAASMARN 79
>UNIPROTKB|E2QUP3 [details] [associations]
symbol:RBM5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00443
SMART:SM00547 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0043065
GeneTree:ENSGT00510000046476 GO:GO:0000245 GO:GO:0000381 KO:K13094
CTD:10181 OMA:TADSYKD EMBL:AAEX03012225 RefSeq:XP_861224.2
ProteinModelPortal:E2QUP3 Ensembl:ENSCAFT00000017309 GeneID:476618
KEGG:cfa:476618 NextBio:20852241 Uniprot:E2QUP3
Length = 815
Score = 133 (51.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 34/88 (38%), Positives = 48/88 (54%)
Query: 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLGS 148
A+ D + YD +SGYYY+ + GLYYDP S +YY+ W ++E Y +PA+ S
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETY--VPAAESS 512
Query: 149 KHRPTMKHPFPAFGGGSIVENKDSAKSQ 176
H+ T P PA G E K+ KS+
Sbjct: 513 SHQQTGL-P-PAKEGK---EKKEKPKSK 535
>UNIPROTKB|F1SPQ8 [details] [associations]
symbol:RBM5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355
SMART:SM00360 SMART:SM00443 SMART:SM00547 GO:GO:0005634
GO:GO:0000166 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0043065 GeneTree:ENSGT00510000046476 GO:GO:0000245
GO:GO:0000381 KO:K13094 CTD:10181 OMA:TADSYKD EMBL:CU861627
RefSeq:XP_003132269.3 UniGene:Ssc.49591 Ensembl:ENSSSCT00000012473
GeneID:100515237 KEGG:ssc:100515237 Uniprot:F1SPQ8
Length = 815
Score = 130 (50.8 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 33/88 (37%), Positives = 48/88 (54%)
Query: 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLGS 148
A+ D + YD +SGYYY+ + GLYYDP S +YY+ W ++E Y +PA+ +
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETY--VPAAESN 512
Query: 149 KHRPTMKHPFPAFGGGSIVENKDSAKSQ 176
H+ T P PA G E K+ KS+
Sbjct: 513 SHQQTGL-P-PAKEGK---EKKEKPKSK 535
>UNIPROTKB|P52756 [details] [associations]
symbol:RBM5 "RNA-binding protein 5" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000245 "spliceosomal complex assembly" evidence=IDA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=TAS] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA;TAS] [GO:0005681 "spliceosomal complex"
evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0003677
"DNA binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS00028 PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157
PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355 SMART:SM00360
SMART:SM00443 SMART:SM00547 GO:GO:0006915 GO:GO:0008285
GO:GO:0005654 GO:GO:0000166 EMBL:CH471055 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065 GO:GO:0000245
GO:GO:0000381 eggNOG:NOG290849 HOVERGEN:HBG000318 KO:K13094
CTD:10181 OMA:TADSYKD OrthoDB:EOG4VT5WV EMBL:U23946 EMBL:AF091263
EMBL:AF103802 EMBL:AF107493 EMBL:AK297249 EMBL:AK297445
EMBL:AK302766 EMBL:AK314032 EMBL:U73168 IPI:IPI00005036
IPI:IPI00796867 IPI:IPI00927051 IPI:IPI00930333 IPI:IPI00930619
RefSeq:NP_005769.1 UniGene:Hs.439480 PDB:2LK0 PDB:2LK1 PDB:2LKZ
PDBsum:2LK0 PDBsum:2LK1 PDBsum:2LKZ ProteinModelPortal:P52756
SMR:P52756 DIP:DIP-47277N IntAct:P52756 MINT:MINT-1406668
STRING:P52756 PhosphoSite:P52756 DMDM:13124794 PaxDb:P52756
PRIDE:P52756 Ensembl:ENST00000347869 Ensembl:ENST00000469838
GeneID:10181 KEGG:hsa:10181 UCSC:uc003cyg.3 GeneCards:GC03P050101
HGNC:HGNC:9902 HPA:HPA017335 HPA:HPA018011 MIM:606884
neXtProt:NX_P52756 PharmGKB:PA34267 InParanoid:P52756
PhylomeDB:P52756 ChiTaRS:RBM5 GenomeRNAi:10181 NextBio:38542
ArrayExpress:P52756 Bgee:P52756 Genevestigator:P52756
GermOnline:ENSG00000003756 Uniprot:P52756
Length = 815
Score = 129 (50.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/88 (37%), Positives = 48/88 (54%)
Query: 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLGS 148
A+ D + YD +SGYYY+ + GLYYDP S +YY+ W ++E Y +PA+ S
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETY--VPAAESS 512
Query: 149 KHRPTMKHPFPAFGGGSIVENKDSAKSQ 176
H+ + P PA G E K+ KS+
Sbjct: 513 SHQQSGL-P-PAKEGK---EKKEKPKSK 535
>MGI|MGI:1933204 [details] [associations]
symbol:Rbm5 "RNA binding motif protein 5" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR007087 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585 PROSITE:PS00028
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00443
SMART:SM00547 MGI:MGI:1933204 GO:GO:0005634 GO:GO:0006915
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065
GeneTree:ENSGT00510000046476 PDB:2CLV PDB:2OL3 PDBsum:2CLV
PDBsum:2OL3 GO:GO:0000245 GO:GO:0000381 eggNOG:NOG290849
HOVERGEN:HBG000318 KO:K13094 HOGENOM:HOG000046285 CTD:10181
OMA:TADSYKD OrthoDB:EOG4VT5WV EMBL:AJ309168 EMBL:AK134183
EMBL:AK146880 EMBL:BC003988 EMBL:BC023854 EMBL:BC031899
EMBL:BC043058 EMBL:BC054729 IPI:IPI00130160 IPI:IPI00798508
RefSeq:NP_683732.1 UniGene:Mm.259197 ProteinModelPortal:Q91YE7
SMR:Q91YE7 STRING:Q91YE7 PhosphoSite:Q91YE7 PaxDb:Q91YE7
PRIDE:Q91YE7 Ensembl:ENSMUST00000035199 GeneID:83486 KEGG:mmu:83486
UCSC:uc009rmv.2 UCSC:uc009rmw.2 InParanoid:Q91YE7
EvolutionaryTrace:Q91YE7 NextBio:350596 Bgee:Q91YE7 CleanEx:MM_RBM5
Genevestigator:Q91YE7 GermOnline:ENSMUSG00000032580 Uniprot:Q91YE7
Length = 815
Score = 127 (49.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 31/88 (35%), Positives = 47/88 (53%)
Query: 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLGS 148
A+ D + YD +SGYYY+ + GLYYDP S +YY+ W ++E Y +PA+ S
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETY--VPAAEAS 512
Query: 149 KHRPTMKHPFPAFGGGSIVENKDSAKSQ 176
++ T P+ G E K+ KS+
Sbjct: 513 SNQQT---GLPSTKEGK--EKKEKPKSK 535
>RGD|1305059 [details] [associations]
symbol:Rbm5 "RNA binding motif protein 5" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=ISO;ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF00641 Pfam:PF01585 PROSITE:PS00028 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547 RGD:1305059
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0043065 EMBL:CH473954 GeneTree:ENSGT00510000046476
GO:GO:0000245 GO:GO:0000381 eggNOG:NOG290849 KO:K13094
HOGENOM:HOG000046285 CTD:10181 OrthoDB:EOG4VT5WV EMBL:BC166477
IPI:IPI00193008 RefSeq:NP_001094018.1 UniGene:Rn.17033
ProteinModelPortal:B2GV05 STRING:B2GV05 PhosphoSite:B2GV05
PRIDE:B2GV05 Ensembl:ENSRNOT00000024529 GeneID:300996
KEGG:rno:300996 UCSC:RGD:1305059 NextBio:647878 ArrayExpress:B2GV05
Genevestigator:B2GV05 Uniprot:B2GV05
Length = 815
Score = 122 (48.0 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLGS 148
A+ D + YD +SGYYY+ + GLYYDP S +YY+ W ++E Y +PA+ S
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETY--VPAAESS 512
Query: 149 KHRPTMKHPFPAFGGGSIVENKDSAKSQ 176
++ P+ G E K+ KS+
Sbjct: 513 SNQQA---GLPSTKEGK--EKKEKPKSK 535
>UNIPROTKB|Q1RMU5 [details] [associations]
symbol:RBM5 "RNA-binding protein 5" species:9913 "Bos
taurus" [GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0043065 "positive
regulation of apoptotic process" evidence=ISS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS00028 PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157
PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355 SMART:SM00360
SMART:SM00443 SMART:SM00547 GO:GO:0005634 GO:GO:0006915
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065
GeneTree:ENSGT00510000046476 GO:GO:0000245 GO:GO:0000381
eggNOG:NOG290849 HOVERGEN:HBG000318 KO:K13094 HOGENOM:HOG000046285
EMBL:BC114706 IPI:IPI00731526 RefSeq:NP_001039839.1
UniGene:Bt.76139 ProteinModelPortal:Q1RMU5 STRING:Q1RMU5
PRIDE:Q1RMU5 Ensembl:ENSBTAT00000008305 GeneID:534216
KEGG:bta:534216 CTD:10181 InParanoid:Q1RMU5 OMA:TADSYKD
OrthoDB:EOG4VT5WV NextBio:20876310 Uniprot:Q1RMU5
Length = 815
Score = 118 (46.6 bits), Expect = 0.00025, P = 0.00025
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLGS 148
A+ D + YD +SGYYY+ + GLYYDP S +YY+ W ++E Y A+ +
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYML--AAESN 512
Query: 149 KHRPTMKHPFPAFGGGSIVENKDSAKSQ 176
H+ T P PA G E K+ KS+
Sbjct: 513 SHQQTGL-P-PAKEGK---EKKEKPKSK 535
>FB|FBgn0031319 [details] [associations]
symbol:CG4896 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF01585 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355 SMART:SM00360
SMART:SM00443 SMART:SM00547 EMBL:AE014134 GO:GO:0000166
GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005622
GeneTree:ENSGT00510000046476 KO:K13094 OMA:QCNEPRA
FlyBase:FBgn0031319 GenomeRNAi:33305 NextBio:782948
UniGene:Dm.30757 GeneID:33305 KEGG:dme:Dmel_CG4896
RefSeq:NP_722689.2 ProteinModelPortal:Q8IPW6 SMR:Q8IPW6
STRING:Q8IPW6 EnsemblMetazoa:FBtr0077970 UCSC:CG4896-RC
InParanoid:Q8IPW6 PhylomeDB:Q8IPW6 ArrayExpress:Q8IPW6 Bgee:Q8IPW6
Uniprot:Q8IPW6
Length = 968
Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 95 DHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYA-AIPAS 145
D K+ YD TSGYYY+ GLYYD S +YY++ G W + Y A PAS
Sbjct: 584 DVSKYQYDETSGYYYDHVTGLYYDAHSQYYYNNETGAYLYWDQKRSTYVLATPAS 638
>UNIPROTKB|E1BXK5 [details] [associations]
symbol:E1BXK5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000245
"spliceosomal complex assembly" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00443
SMART:SM00547 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0043065
GeneTree:ENSGT00510000046476 GO:GO:0000245 GO:GO:0000381
OMA:TADSYKD EMBL:AADN02056427 EMBL:AADN02056428 EMBL:AADN02056429
IPI:IPI00585702 Ensembl:ENSGALT00000007370 Uniprot:E1BXK5
Length = 810
Score = 117 (46.2 bits), Expect = 0.00032, P = 0.00032
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLGS 148
A+ D + YD +SGYYY+ GLYYDP S +YY+ W ++E Y +PA+ G
Sbjct: 452 AVPDTSTYQYDESSGYYYDPVTGLYYDPNSQYYYNALTQQYLYWDGEKETY--MPAAEGI 509
Query: 149 KHRPT 153
++ T
Sbjct: 510 TYQQT 514
>FB|FBgn0031318 [details] [associations]
symbol:CG4887 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF01585 PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157
PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355 SMART:SM00360
SMART:SM00443 SMART:SM00547 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398
eggNOG:NOG290849 EMBL:AY070653 ProteinModelPortal:Q8SZM4 SMR:Q8SZM4
STRING:Q8SZM4 PaxDb:Q8SZM4 PRIDE:Q8SZM4 FlyBase:FBgn0031318
InParanoid:Q8SZM4 OrthoDB:EOG498SFS ArrayExpress:Q8SZM4 Bgee:Q8SZM4
Uniprot:Q8SZM4
Length = 1004
Score = 117 (46.2 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 28/84 (33%), Positives = 42/84 (50%)
Query: 67 QIEAKAKRSYQKDLANQEARNSNAV-ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYY 125
Q A+ K + +A+ N + D ++ YD TSGYYY+ + GLYY+ S +YY
Sbjct: 597 QAAAQVKATLAAQVASAPKGNDGKIYPTPDVTQYQYDETSGYYYDSTTGLYYNAHSQYYY 656
Query: 126 SDAIGN---WVTQEEAYA-AIPAS 145
++ G W + Y A PAS
Sbjct: 657 NNETGAYLYWDQRRSTYVLATPAS 680
Score = 41 (19.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 160 AFGGGSIVENKDSAKSQN 177
A+GG S E ++A SQN
Sbjct: 797 AYGGTSDSEEDNAASSQN 814
>UNIPROTKB|A4IGK4 [details] [associations]
symbol:rbm5 "RNA-binding protein 5" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043065
"positive regulation of apoptotic process" evidence=ISS]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF00641 Pfam:PF01585 PROSITE:PS00028 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065
GeneTree:ENSGT00510000046476 GO:GO:0000245 GO:GO:0000381
eggNOG:NOG290849 KO:K13094 HOGENOM:HOG000046285 CTD:10181
OMA:TADSYKD EMBL:CR855749 EMBL:BC135140 RefSeq:NP_001017278.1
UniGene:Str.11018 ProteinModelPortal:A4IGK4 STRING:A4IGK4
Ensembl:ENSXETT00000015911 GeneID:550032 KEGG:xtr:550032
Xenbase:XB-GENE-494987 Bgee:A4IGK4 Uniprot:A4IGK4
Length = 838
Score = 117 (46.2 bits), Expect = 0.00034, P = 0.00034
Identities = 32/103 (31%), Positives = 49/103 (47%)
Query: 83 QEARNSNAV------ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WV 133
+EA NAV ++ D + YD +SGYYY+ GLYYDP S +YY+ W
Sbjct: 456 EEAAPPNAVIPGVKYSVPDTSTYQYDESSGYYYDPQTGLYYDPNSQYYYNSLTQQYLYWD 515
Query: 134 TQEEAYAAIPASLGSKHRPTMKHPFPAFGGGSIVENKDSAKSQ 176
+++ Y +PA+ G+ + A E K+ KS+
Sbjct: 516 GEKQTY--LPAADGAGQSGAQPNGANAGSSKEGKEKKEKPKSK 556
>UNIPROTKB|A0JMV4 [details] [associations]
symbol:rbm5-a "RNA-binding protein 5-A" species:8355
"Xenopus laevis" [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043065
"positive regulation of apoptotic process" evidence=ISS]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF00641 Pfam:PF01585 PROSITE:PS00028 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065
GO:GO:0000245 GO:GO:0000381 KO:K13094 EMBL:BC126019
RefSeq:NP_001090434.1 UniGene:Xl.7259 GeneID:779346 KEGG:xla:779346
CTD:779346 Xenbase:XB-GENE-494991 Uniprot:A0JMV4
Length = 833
Score = 116 (45.9 bits), Expect = 0.00043, P = 0.00043
Identities = 35/105 (33%), Positives = 52/105 (49%)
Query: 83 QEARNSNAV------ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WV 133
+EA NA+ ++ D + YD +SGYYY+ GLYYDP S +YY+ W
Sbjct: 455 EEAAAPNAIVPGLKYSVPDTSTYQYDESSGYYYDPQTGLYYDPNSQYYYNSLTQQYLYWD 514
Query: 134 TQEEAYAAIPASLGSKHRPTMKHPFPAFGGGSIV--ENKDSAKSQ 176
+++ Y +PA+ G+ T P A G S E K+ KS+
Sbjct: 515 GEKQTY--LPAADGAGQSGTQ--PNGANPGTSKEGKEKKEKPKSK 555
>DICTYBASE|DDB_G0286361 [details] [associations]
symbol:DDB_G0286361 species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR003604
InterPro:IPR013085 Pfam:PF06220 SMART:SM00451
dictyBase:DDB_G0286361 GO:GO:0008270 GO:GO:0003676
EMBL:AAFI02000085 RefSeq:XP_637705.1 ProteinModelPortal:Q54LX5
EnsemblProtists:DDB0186927 GeneID:8625570 KEGG:ddi:DDB_G0286361
eggNOG:euNOG16685 InParanoid:Q54LX5 OMA:VISPTIP Uniprot:Q54LX5
Length = 514
Score = 108 (43.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 10 NK-WCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXXXXXXLEQI 68
NK WC +CKI+I +N S++NH+ G RHK NV + ++ + +I
Sbjct: 18 NKHWCKYCKIFIQDN-ISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRI 76
Query: 69 EAKAKRSY-QKDLA 81
+ RS+ +KDL+
Sbjct: 77 KNTGARSFREKDLS 90
Score = 42 (19.8 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 162 GGGSIVENKDSAKSQNGPARGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKK 216
G GS E++ S Q+ G +++P+ S G+ + ++ ++D K KK
Sbjct: 329 GSGSESESESSEVDQSESIIGQW--QTVDPIESAFGSTRKDSDDEKDKKDKKNKK 381
>UNIPROTKB|Q6DDU9 [details] [associations]
symbol:rbm5-b "RNA-binding protein 5-B" species:8355
"Xenopus laevis" [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043065
"positive regulation of apoptotic process" evidence=ISS]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50174 PROSITE:PS50199 SMART:SM00360
SMART:SM00443 SMART:SM00547 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0043065 GO:GO:0000245 GO:GO:0000381 KO:K13094
EMBL:BC077408 RefSeq:NP_001086761.1 UniGene:Xl.19852 HSSP:O95218
ProteinModelPortal:Q6DDU9 GeneID:446596 KEGG:xla:446596 CTD:446596
Xenbase:XB-GENE-6256678 Uniprot:Q6DDU9
Length = 749
Score = 114 (45.2 bits), Expect = 0.00066, P = 0.00066
Identities = 30/88 (34%), Positives = 45/88 (51%)
Query: 95 DHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLG---S 148
D + YD +SGYYY+ GLYYDP S +YY+ W +++ Y +PA+ G S
Sbjct: 471 DTSTYQYDESSGYYYDPQTGLYYDPNSQYYYNSLTQQYLYWDGEKQTY--LPAADGTGQS 528
Query: 149 KHRPTMKHPFPAFGGGSIVENKDSAKSQ 176
+P +P + G E K+ KS+
Sbjct: 529 GAQPNGANPGTSKEGK---EKKEKPKSK 553
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.128 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 253 215 0.00087 112 3 11 23 0.46 33
32 0.50 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 596 (63 KB)
Total size of DFA: 196 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.16u 0.11s 21.27t Elapsed: 00:00:01
Total cpu time: 21.16u 0.11s 21.27t Elapsed: 00:00:01
Start: Fri May 10 07:35:27 2013 End: Fri May 10 07:35:28 2013