BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025398
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5F457|WBP4_CHICK WW domain-binding protein 4 OS=Gallus gallus GN=WBP4 PE=2 SV=1
Length = 398
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 55/80 (68%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
M +YW SQ K+CD+CK +I++N SI H+ G+ HKENV K+++++RK++ K KE +
Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSIDFHERGKNHKENVAKRISEIRKKSMEKAKEEEN 60
Query: 61 TARALEQIEAKAKRSYQKDL 80
++ +E A ++YQ+DL
Sbjct: 61 MSKEFAAMEEAAMKAYQEDL 80
>sp|O75554|WBP4_HUMAN WW domain-binding protein 4 OS=Homo sapiens GN=WBP4 PE=1 SV=1
Length = 376
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 57/80 (71%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
M +YW SQ K+CD+CK +I++N S+ H+ G+ HKENV K+++++++++ K KE ++
Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVAKRISEIKQKSLDKAKEEEK 60
Query: 61 TARALEQIEAKAKRSYQKDL 80
++ +EA A ++YQ+DL
Sbjct: 61 ASKEFAAMEAAALKAYQEDL 80
>sp|Q5HZF2|WBP4_RAT WW domain-binding protein 4 OS=Rattus norvegicus GN=Wbp4 PE=2
SV=1
Length = 374
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 57/80 (71%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
M +YW SQ K+CD+CK +I++N S+ H+ G+ HKENV +K++++++++ K KE ++
Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARKISEIKQKSLDKAKEEEK 60
Query: 61 TARALEQIEAKAKRSYQKDL 80
++ +EA A ++YQ+DL
Sbjct: 61 ASKEFAAMEAAALKAYQEDL 80
>sp|Q61048|WBP4_MOUSE WW domain-binding protein 4 OS=Mus musculus GN=Wbp4 PE=1 SV=4
Length = 376
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 57/80 (71%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
M +YW SQ K+CD+CK +I++N S+ H+ G+ HKENV ++++++++++ K KE ++
Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARRISEIKQKSLDKAKEEEK 60
Query: 61 TARALEQIEAKAKRSYQKDL 80
++ +EA A ++YQ+DL
Sbjct: 61 ASKEFAAMEAAALKAYQEDL 80
>sp|P52756|RBM5_HUMAN RNA-binding protein 5 OS=Homo sapiens GN=RBM5 PE=1 SV=2
Length = 815
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLGS 148
A+ D + YD +SGYYY+ + GLYYDP S +YY+ W ++E Y +PA+ S
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETY--VPAAESS 512
Query: 149 KHR 151
H+
Sbjct: 513 SHQ 515
>sp|Q91YE7|RBM5_MOUSE RNA-binding protein 5 OS=Mus musculus GN=Rbm5 PE=1 SV=1
Length = 815
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLGS 148
A+ D + YD +SGYYY+ + GLYYDP S +YY+ W ++E Y +PA+ S
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETY--VPAAEAS 512
Query: 149 KHRPT 153
++ T
Sbjct: 513 SNQQT 517
>sp|Q1RMU5|RBM5_BOVIN RNA-binding protein 5 OS=Bos taurus GN=RBM5 PE=2 SV=1
Length = 815
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQEEAY 139
A+ D + YD +SGYYY+ + GLYYDP S +YY N +TQ+ Y
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYY-----NSLTQQYLY 497
>sp|B2GV05|RBM5_RAT RNA-binding protein 5 OS=Rattus norvegicus GN=Rbm5 PE=2 SV=1
Length = 815
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLGS 148
A+ D + YD +SGYYY+ + GLYYDP S +YY+ W ++E Y +PA+ S
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETY--VPAAESS 512
Query: 149 KHR 151
++
Sbjct: 513 SNQ 515
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 98 KWDYDGTSGYYYNESNGLYYDPKSGFYY---SDAIGNWVTQEEAY 139
K+ TS Y Y+ES+G YYDP +G YY S N +TQ+ Y
Sbjct: 453 KYAVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLY 497
>sp|A4IGK4|RBM5_XENTR RNA-binding protein 5 OS=Xenopus tropicalis GN=rbm5 PE=2 SV=1
Length = 838
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 11/63 (17%)
Query: 83 QEARNSNAV------ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQE 136
+EA NAV ++ D + YD +SGYYY+ GLYYDP S +YY N +TQ+
Sbjct: 456 EEAAPPNAVIPGVKYSVPDTSTYQYDESSGYYYDPQTGLYYDPNSQYYY-----NSLTQQ 510
Query: 137 EAY 139
Y
Sbjct: 511 YLY 513
>sp|A0JMV4|RBM5A_XENLA RNA-binding protein 5-A OS=Xenopus laevis GN=rbm5-a PE=2 SV=1
Length = 833
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 11/63 (17%)
Query: 83 QEARNSNAV------ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQE 136
+EA NA+ ++ D + YD +SGYYY+ GLYYDP S +YY N +TQ+
Sbjct: 455 EEAAAPNAIVPGLKYSVPDTSTYQYDESSGYYYDPQTGLYYDPNSQYYY-----NSLTQQ 509
Query: 137 EAY 139
Y
Sbjct: 510 YLY 512
>sp|Q99KG3|RBM10_MOUSE RNA-binding protein 10 OS=Mus musculus GN=Rbm10 PE=1 SV=1
Length = 930
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 95 DHEKWDYDGTSGYYYNESNGLYYDPKSGFYY 125
D + YD TSGYYY+ GLYYDP S +YY
Sbjct: 568 DVSTYQYDETSGYYYDPQTGLYYDPNSQYYY 598
>sp|P98175|RBM10_HUMAN RNA-binding protein 10 OS=Homo sapiens GN=RBM10 PE=1 SV=3
Length = 930
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 95 DHEKWDYDGTSGYYYNESNGLYYDPKSGFYY 125
D + YD TSGYYY+ GLYYDP S +YY
Sbjct: 568 DVSTYQYDETSGYYYDPQTGLYYDPNSQYYY 598
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 88 SNAVALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYY 125
++ A + ++ S Y Y+E++G YYDP++G YY
Sbjct: 553 TSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYY 590
>sp|P70501|RBM10_RAT RNA-binding protein 10 OS=Rattus norvegicus GN=Rbm10 PE=2 SV=1
Length = 852
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 95 DHEKWDYDGTSGYYYNESNGLYYDPKSGFYY 125
D + YD TSGYYY+ GLYYDP S +YY
Sbjct: 490 DVSTYQYDETSGYYYDPQTGLYYDPNSQYYY 520
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 88 SNAVALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYY 125
++ A + ++ S Y Y+E++G YYDP++G YY
Sbjct: 475 TSPTAPESYSQYPVPDVSTYQYDETSGYYYDPQTGLYY 512
>sp|Q6DDU9|RBM5B_XENLA RNA-binding protein 5-B OS=Xenopus laevis GN=rbm5-b PE=2 SV=1
Length = 749
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQEEAY 139
++ D + YD +SGYYY+ GLYYDP S +YY N +TQ+ Y
Sbjct: 468 SVPDTSTYQYDESSGYYYDPQTGLYYDPNSQYYY-----NSLTQQYLY 510
>sp|O60138|YNS7_SCHPO Uncharacterized protein C18H10.07 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC18H10.07 PE=4 SV=1
Length = 224
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 34/55 (61%)
Query: 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKE 55
M +YW S +C +C+I++ + P + R+H+ +H++ ++K + D+ + N ++
Sbjct: 1 MADYWKSIPKYYCKYCQIFVKDTPFARRSHEQTYKHQDAIKKVMDDIHRSNLLRQ 55
>sp|Q1GFW2|SYT_RUEST Threonine--tRNA ligase OS=Ruegeria sp. (strain TM1040) GN=thrS PE=3
SV=1
Length = 648
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 62/157 (39%), Gaps = 19/157 (12%)
Query: 105 SGYYYN--ESNGLYYDPKSGFYYSDAIG-NW-VTQEEAYAAIPASL--------GSKHRP 152
+GY Y E G +Y PK F +DAIG NW + A +P L GSKHRP
Sbjct: 458 AGYDYEILEGEGAFYGPKLEFTLTDAIGRNWQCGTLQVDANLPERLEASFIGQDGSKHRP 517
Query: 153 TMKH-----PFPAFGGGSIVENKDSAKSQNGPARGPVVSSSLNPMRSVKGAPSSL-AVGK 206
M H F F G I E+ P + V S + V +L A G
Sbjct: 518 VMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASITSEADDYVNEVVETLRAAGV 577
Query: 207 RKREDNKLKKMAKPVSKEEAAAIKAREAAKKR-VEER 242
R D + +K+ V + + A R VEER
Sbjct: 578 RAEADTRNEKINYKVREHSVGKVPVILAVGHREVEER 614
>sp|Q7TN31|AGGF1_MOUSE Angiogenic factor with G patch and FHA domains 1 OS=Mus musculus
GN=Aggf1 PE=2 SV=1
Length = 711
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 101 YDGTSGYYYNESNGLYYDPKSGFYY 125
+D ++G+YY+ N LYYDP +G YY
Sbjct: 217 FDHSTGFYYDSENQLYYDPSTGIYY 241
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 50 ENAAKEKEHKETARALEQIEAKAKRSYQKDLANQEARNSNAVALNDHEKWDYDGTSGYYY 109
E + +E T+ + E + A A+ + + E+ + A A + YD ++G Y+
Sbjct: 158 EGVSHRQEDAVTSDSQESVSALAEGPALEGSSLAESLRAAAEAAVSQTGFTYDESTGLYF 217
Query: 110 NESNGLYYDPKSGFYYSDAIGNW 132
+ S G YYD ++ YY + G +
Sbjct: 218 DHSTGFYYDSENQLYYDPSTGIY 240
>sp|Q8N302|AGGF1_HUMAN Angiogenic factor with G patch and FHA domains 1 OS=Homo sapiens
GN=AGGF1 PE=1 SV=2
Length = 714
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 101 YDGTSGYYYNESNGLYYDPKSGFYY 125
+D ++G+YY+ N LYYDP +G YY
Sbjct: 217 FDHSTGFYYDSENQLYYDPSTGIYY 241
>sp|Q5LTX8|SYT_RUEPO Threonine--tRNA ligase OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=thrS PE=3 SV=1
Length = 648
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 58/150 (38%), Gaps = 17/150 (11%)
Query: 110 NESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH--- 156
N G +Y PK F +DAIG ++V E A + G+KHRP M H
Sbjct: 465 NPGEGAFYGPKLEFVLTDAIGRDWQCGTHQVDFVLPERLDATYIGADGAKHRPVMLHRAT 524
Query: 157 --PFPAFGGGSIVENKDSAKSQNGPARGPVVSSSLNPMRSVKGAPSSL-AVGKRKREDNK 213
F F G I E+ P + V S + V+ + L A G R D +
Sbjct: 525 LGSFERFIGILIEEHAGKLPFWLAPRQVVVASITSEADDYVREVVAELCAAGVRAEADTR 584
Query: 214 LKKMAKPVSKEEAAAIKAREAAKKR-VEER 242
+K+ V + + A R VEER
Sbjct: 585 NEKINYKVREHSVGKVPVILAVGHREVEER 614
>sp|F6HQ26|RU1C_VITVI U1 small nuclear ribonucleoprotein C OS=Vitis vinifera
GN=VIT_07s0104g01170 PE=3 SV=1
Length = 213
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 12 WCDFCKIYISNNPSSIR-NHDLGQRHKENVQKKLADMRKENA-----AKEKEHKETARAL 65
+CD+C Y++++ S+R H+ G +HK NV+ ++ + KEH A
Sbjct: 5 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAF 64
Query: 66 EQIEA 70
+Q+ A
Sbjct: 65 QQVGA 69
>sp|Q0BXC2|SYT_HYPNA Threonine--tRNA ligase OS=Hyphomonas neptunium (strain ATCC 15444)
GN=thrS PE=3 SV=1
Length = 657
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 16/78 (20%)
Query: 107 YYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH 156
+ E G +Y PK F+ +DAIG ++V E A S G+KHRP M H
Sbjct: 467 FSIAEGEGAFYGPKLEFHLTDAIGRTWQCGTFQLDYVLPERLDAEYTGSDGAKHRPVMLH 526
Query: 157 PFPAFGG-----GSIVEN 169
FG G ++EN
Sbjct: 527 R-AVFGTFERFMGILIEN 543
>sp|Q9P794|RU1C_SCHPO U1 small nuclear ribonucleoprotein C OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=usp103 PE=1 SV=1
Length = 182
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 13 CDFCKIYISNNPSSIRN-HDLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQ 67
CD+C+++++++ S+R H+ G+ H +NVQ + +E A K+ E + ++ L++
Sbjct: 6 CDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEERASSGFLKK 61
>sp|B4SB93|SYT_PELPB Threonine--tRNA ligase OS=Pelodictyon phaeoclathratiforme (strain
DSM 5477 / BU-1) GN=thrS PE=3 SV=1
Length = 657
Score = 37.4 bits (85), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 20/141 (14%)
Query: 107 YYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH 156
Y+ +Y PK F DA+G ++V E S G KHRP + H
Sbjct: 473 YFIGVGEASFYGPKIDFIVRDALGRKWQLGTVQVDYVMPERFDLTYTGSDGQKHRPVVIH 532
Query: 157 --PFPA---FGGGSIVENKDSAKSQNGPARG---PVVSSSLNPMRSVKGAPSSLAVGKRK 208
PF + F G I + P + P+ L+ +SV A LA G R
Sbjct: 533 RAPFGSMERFIGVLIEHTAGNFPLWLAPVQAVVLPIAEDVLDYAKSVHQA--LLAAGIRA 590
Query: 209 REDNKLKKMAKPVSKEEAAAI 229
D + +K+ K + E + I
Sbjct: 591 ELDTRSEKIGKKIRDAEVSKI 611
>sp|P90815|RU1C_CAEEL U1 small nuclear ribonucleoprotein C OS=Caenorhabditis elegans
GN=F08B4.7 PE=3 SV=1
Length = 142
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 12 WCDFCKIYISNNPSSIR-NHDLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQIEA 70
+CD+C +++++ S+R H+ G++HK+NV+ ++ A K + A A +++
Sbjct: 5 YCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQTARAFATNRMQG 64
Query: 71 KAKRS 75
R+
Sbjct: 65 AVPRT 69
>sp|Q61464|ZN638_MOUSE Zinc finger protein 638 OS=Mus musculus GN=Znf638 PE=1 SV=2
Length = 1960
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 3 EYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHK 59
++ V + +C C ++ S ++ NH RHK+N +K +A RKE E E +
Sbjct: 1902 DFLVPKAGFFCPICSLFYSGE-KAMANHCKSTRHKQNTEKFMAKQRKEKEQNETEER 1957
>sp|A8EXW5|SYT_RICCK Threonine--tRNA ligase OS=Rickettsia canadensis (strain McKiel)
GN=thrS PE=3 SV=1
Length = 635
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 107 YYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH 156
Y N G +Y PK F +DAIG ++V E+ A+ A+ G K RP M H
Sbjct: 451 YTLNPGEGAFYGPKLEFVLTDAIGRQWQCGTLQMDFVLLEQLDASYVAASGEKKRPVMLH 510
>sp|Q14966|ZN638_HUMAN Zinc finger protein 638 OS=Homo sapiens GN=ZNF638 PE=1 SV=2
Length = 1978
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 3 EYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHK 59
++ V + +C C ++ S ++ NH RHK+N +K +A RKE E E +
Sbjct: 1920 DFLVPKAGFFCPICSLFYSGE-KAMTNHCKSTRHKQNTEKFMAKQRKEKEQNEAEER 1975
>sp|Q5NPH1|SYT_ZYMMO Threonine--tRNA ligase OS=Zymomonas mobilis subsp. mobilis (strain
ATCC 31821 / ZM4 / CP4) GN=thrS PE=3 SV=1
Length = 659
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 71/186 (38%), Gaps = 53/186 (28%)
Query: 103 GTSGYYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRP 152
G + Y G +Y PK F+ +DAIG ++V E A+ A GS+ RP
Sbjct: 469 GITDYEELPGEGAFYGPKLEFHLTDAIGRTWQCGTLQLDYVLPERLDASYVAEDGSRKRP 528
Query: 153 TMKH-----PFPAFGG---------------------GSIVENKDS---AKSQNGPARGP 183
M H F F G +IV DS + + A G
Sbjct: 529 VMLHRAIIGTFERFIGILIEHHAGRFPLWMAPVQAVVATIVSEADSFAESVVEKMKAAGL 588
Query: 184 VVSSSLNPMR--------SVKGAPSSLAVGKRKREDNK--LKKMAK----PVSKEEAAAI 229
V S + + S+ P+ L VGKR+ E+ K ++K+ +S +EA A+
Sbjct: 589 RVVSDIRNEKINYKIREHSLTKVPNILVVGKREAEEGKVAIRKLGSRDQIILSVDEAIAL 648
Query: 230 KAREAA 235
EA
Sbjct: 649 LLEEAT 654
>sp|A8XW44|RU1C_CAEBR U1 small nuclear ribonucleoprotein C OS=Caenorhabditis briggsae
GN=CBG19656 PE=3 SV=1
Length = 142
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 12 WCDFCKIYISNNPSSIR-NHDLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQIEA 70
+CD+C +++++ S+R H+ G++HK+NV+ ++ A K + A A ++
Sbjct: 5 YCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQTARAFATNRMHG 64
Query: 71 KAKRS 75
R+
Sbjct: 65 AVPRT 69
>sp|A9HFP5|SYT_GLUDA Threonine--tRNA ligase OS=Gluconacetobacter diazotrophicus (strain
ATCC 49037 / DSM 5601 / PAl5) GN=thrS PE=3 SV=1
Length = 641
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 107 YYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH 156
Y YN G +Y PK F DAIG ++V E A+ ++HRP M H
Sbjct: 454 YEYNPGEGAFYGPKLEFVLRDAIGRDWQCGTLQVDYVLPERLDASFVGEDSARHRPVMLH 513
>sp|B2A5P2|SYT_NATTJ Threonine--tRNA ligase OS=Natranaerobius thermophilus (strain ATCC
BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=thrS PE=3 SV=1
Length = 636
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 107 YYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH 156
Y NE +G +Y PK F DAIG +++ E G KHRP M H
Sbjct: 452 YIVNEGDGAFYGPKIDFQLEDAIGRSWQCSTIQLDFLLPERFDLTYIGEDGQKHRPVMIH 511
>sp|A8GVV1|SYT_RICB8 Threonine--tRNA ligase OS=Rickettsia bellii (strain OSU 85-389)
GN=thrS PE=3 SV=1
Length = 633
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 105 SGYYY--NESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRP 152
+GY Y N G +Y PK F +DAIG ++V E A+ A+ G K RP
Sbjct: 447 AGYSYTLNPGEGAFYGPKLEFVLTDAIGRQWQCGTLQMDFVLPERLDASYVAASGEKKRP 506
Query: 153 TMKH 156
M H
Sbjct: 507 VMLH 510
>sp|Q5FSP9|SYT_GLUOX Threonine--tRNA ligase OS=Gluconobacter oxydans (strain 621H)
GN=thrS PE=3 SV=1
Length = 645
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 107 YYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH 156
Y YN G +Y PK F +DAIG ++V E A+ ++HRP M H
Sbjct: 454 YEYNPGEGAFYGPKLEFVLTDAIGRDWQCGTLQVDYVLPERLDASYIGEDSNRHRPVMLH 513
>sp|A5CD12|SYT_ORITB Threonine--tRNA ligase OS=Orientia tsutsugamushi (strain Boryong)
GN=thrS PE=3 SV=1
Length = 648
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 107 YYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH 156
Y N G +Y PK F +DAIG ++V E A+ +S GSK RP + H
Sbjct: 467 YTINRGEGAFYGPKLEFILTDAIGREWQCGTLQVDFVLPERLNASYISSEGSKKRPVILH 526
Query: 157 -----PFPAFGGGSIVENKDSAKSQNGPARGPVVSSS 188
F F G I P + VVS +
Sbjct: 527 RAILGSFERFIGILIEHYSGRLPIWLAPIQVAVVSIT 563
>sp|C3Z1P5|RU1C_BRAFL U1 small nuclear ribonucleoprotein C OS=Branchiostoma floridae
GN=BRAFLDRAFT_69314 PE=3 SV=1
Length = 221
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 12 WCDFCKIYISNNPSSIR-NHDLGQRHKENVQ 41
+CD+C Y++++ S+R H G++HKENV+
Sbjct: 5 FCDYCDTYLTHDSPSVRKTHCNGRKHKENVR 35
>sp|Q1RJ48|SYT_RICBR Threonine--tRNA ligase OS=Rickettsia bellii (strain RML369-C)
GN=thrS PE=3 SV=1
Length = 635
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 105 SGYYY--NESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRP 152
+GY Y N G +Y PK F +DAIG ++V E A+ A+ G K RP
Sbjct: 447 AGYSYTLNPGEGAFYGPKLEFVLTDAIGRQWQCGTLQMDFVLPERLDASYVAASGEKKRP 506
Query: 153 TMKH 156
M H
Sbjct: 507 VMLH 510
>sp|C5XYW4|RU1C2_SORBI U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor
GN=Sb04g028260 PE=3 SV=1
Length = 228
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 12 WCDFCKIYISNNPSSIR-NHDLGQRHKENV 40
+CD+C Y++++ S+R H+ G +HK NV
Sbjct: 5 YCDYCDTYLTHDSPSVRKQHNAGYKHKANV 34
>sp|B3CSS5|SYT_ORITI Threonine--tRNA ligase OS=Orientia tsutsugamushi (strain Ikeda)
GN=thrS PE=3 SV=1
Length = 648
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 107 YYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH 156
Y N G +Y PK F +DAIG ++V E A+ +S GSK RP + H
Sbjct: 467 YTINRGEGAFYGPKLEFILTDAIGREWQCGTLQVDFVLPERLNASYISSEGSKKRPVILH 526
Query: 157 -----PFPAFGGGSIVENKDSAKSQNGPARGPVVSSS 188
F F G I P + VVS +
Sbjct: 527 RAILGSFERFIGILIEHYSGKLPIWLAPIQVAVVSIT 563
>sp|Q7PXU6|RU1C_ANOGA U1 small nuclear ribonucleoprotein C OS=Anopheles gambiae
GN=AGAP001584 PE=2 SV=2
Length = 152
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 12 WCDFCKIYISNNPSSIR-NHDLGQRHKENVQ 41
+CD+C Y++++ S+R H G++HK+NV+
Sbjct: 5 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 35
>sp|Q8JGS0|RU1C_DANRE U1 small nuclear ribonucleoprotein C OS=Danio rerio GN=snrpc PE=2
SV=1
Length = 159
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 12 WCDFCKIYISNNPSSIR-NHDLGQRHKENVQ 41
+CD+C Y++++ S+R H G++HKENV+
Sbjct: 5 YCDYCDTYLTHDSPSVRKTHCSGRKHKENVK 35
>sp|A8GR83|SYT_RICRS Threonine--tRNA ligase OS=Rickettsia rickettsii (strain Sheila
Smith) GN=thrS PE=3 SV=1
Length = 635
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 107 YYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH 156
Y N G +Y PK F +DAIG ++V E A+ A+ G K RP M H
Sbjct: 451 YTLNPGEGAFYGPKLEFVLTDAIGRQWQCGTLQMDFVLPERLDASYVAASGEKKRPVMLH 510
>sp|C4K0X3|SYT_RICPU Threonine--tRNA ligase OS=Rickettsia peacockii (strain Rustic)
GN=thrS PE=3 SV=1
Length = 635
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 107 YYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH 156
Y N G +Y PK F +DAIG ++V E A+ A+ G K RP M H
Sbjct: 451 YTLNPGEGAFYGPKLEFVLTDAIGRQWQCGTLQMDFVLPERLDASYVAASGEKKRPVMLH 510
>sp|C3PMR6|SYT_RICAE Threonine--tRNA ligase OS=Rickettsia africae (strain ESF-5) GN=thrS
PE=3 SV=1
Length = 635
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 107 YYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH 156
Y N G +Y PK F +DAIG ++V E A+ A+ G K RP M H
Sbjct: 451 YTLNPGEGAFYGPKLEFVLTDAIGRQWQCGTLQMDFVLPERLDASYVAASGEKKRPVMLH 510
>sp|Q92IX4|SYT_RICCN Threonine--tRNA ligase OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=thrS PE=3 SV=1
Length = 635
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 107 YYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH 156
Y N G +Y PK F +DAIG ++V E A+ A+ G K RP M H
Sbjct: 451 YTLNPGEGAFYGPKLEFVLTDAIGRQWQCGTLQMDFVLPERLDASYVAASGEKKRPVMLH 510
>sp|F6TFD9|RU1C_MACMU U1 small nuclear ribonucleoprotein C OS=Macaca mulatta GN=SNRPC
PE=3 SV=1
Length = 159
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 12 WCDFCKIYISNNPSSIR-NHDLGQRHKENVQ 41
+CD+C Y++++ S+R H G++HKENV+
Sbjct: 5 YCDYCDTYLTHDSPSVRKTHCSGRKHKENVK 35
>sp|P09234|RU1C_HUMAN U1 small nuclear ribonucleoprotein C OS=Homo sapiens GN=SNRPC
PE=1 SV=1
Length = 159
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 12 WCDFCKIYISNNPSSIR-NHDLGQRHKENVQ 41
+CD+C Y++++ S+R H G++HKENV+
Sbjct: 5 YCDYCDTYLTHDSPSVRKTHCSGRKHKENVK 35
>sp|E2RGI3|RU1C_CANFA U1 small nuclear ribonucleoprotein C OS=Canis familiaris GN=SNRPC
PE=3 SV=1
Length = 159
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 12 WCDFCKIYISNNPSSIR-NHDLGQRHKENVQ 41
+CD+C Y++++ S+R H G++HKENV+
Sbjct: 5 YCDYCDTYLTHDSPSVRKTHCSGRKHKENVK 35
>sp|Q32PA0|RU1C_BOVIN U1 small nuclear ribonucleoprotein C OS=Bos taurus GN=SNRPC PE=2
SV=2
Length = 159
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 12 WCDFCKIYISNNPSSIR-NHDLGQRHKENVQ 41
+CD+C Y++++ S+R H G++HKENV+
Sbjct: 5 YCDYCDTYLTHDSPSVRKTHCSGRKHKENVK 35
>sp|Q4UKU3|SYT_RICFE Threonine--tRNA ligase OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=thrS PE=3 SV=1
Length = 635
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 107 YYYNESNGLYYDPKSGFYYSDAIG----------NWVTQEEAYAAIPASLGSKHRPTMKH 156
Y N G +Y PK F +DAIG ++V E A+ A+ G K RP M H
Sbjct: 451 YTLNPGEGAFYGPKLEFVLTDAIGRQWQCGTLQMDFVLPERLDASYIAASGEKKRPVMLH 510
>sp|E1C6F0|RU1C_CHICK U1 small nuclear ribonucleoprotein C OS=Gallus gallus GN=SNRPC
PE=3 SV=1
Length = 159
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 12 WCDFCKIYISNNPSSIR-NHDLGQRHKENVQ 41
+CD+C Y++++ S+R H G++HKENV+
Sbjct: 5 YCDYCDTYLTHDSPSVRKTHCSGRKHKENVK 35
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,388,574
Number of Sequences: 539616
Number of extensions: 4246938
Number of successful extensions: 21113
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 284
Number of HSP's that attempted gapping in prelim test: 20196
Number of HSP's gapped (non-prelim): 1073
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)