Query 025398
Match_columns 253
No_of_seqs 211 out of 315
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:23:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0150 Spliceosomal protein F 100.0 2.8E-45 6.1E-50 338.2 12.8 237 1-252 1-248 (336)
2 PF06220 zf-U1: U1 zinc finger 99.5 1.9E-15 4.1E-20 101.8 2.1 37 8-44 1-38 (38)
3 KOG3454 U1 snRNP-specific prot 99.2 1.5E-11 3.1E-16 106.2 5.3 43 8-50 1-44 (165)
4 COG5136 U1 snRNP-specific prot 98.5 9E-08 2E-12 83.3 4.4 42 8-49 1-43 (188)
5 smart00451 ZnF_U1 U1-like zinc 98.5 7.5E-08 1.6E-12 61.5 1.9 33 9-42 2-34 (35)
6 PF12171 zf-C2H2_jaz: Zinc-fin 97.0 0.00036 7.7E-09 42.9 1.4 27 10-37 1-27 (27)
7 KOG4727 U1-like Zn-finger prot 96.9 0.0029 6.2E-08 56.0 6.5 36 9-45 74-109 (193)
8 PF12874 zf-met: Zinc-finger o 96.3 0.0014 3.1E-08 38.9 0.8 25 11-36 1-25 (25)
9 KOG0154 RNA-binding protein RB 95.0 0.019 4.1E-07 57.5 3.2 56 92-147 224-282 (573)
10 KOG0717 Molecular chaperone (D 91.6 0.19 4.1E-06 50.5 3.8 39 10-49 292-330 (508)
11 KOG0227 Splicing factor 3a, su 90.6 0.17 3.7E-06 45.8 2.2 45 7-52 50-94 (222)
12 KOG2950 Uncharacterized protei 90.2 0.077 1.7E-06 51.2 -0.3 40 96-135 291-330 (348)
13 KOG2384 Major histocompatibili 89.1 0.14 3.1E-06 46.5 0.5 29 10-40 84-112 (223)
14 PF14968 CCDC84: Coiled coil p 87.3 0.43 9.3E-06 46.0 2.5 44 7-50 55-103 (336)
15 PF03194 LUC7: LUC7 N_terminus 86.0 1.1 2.3E-05 41.4 4.3 45 9-53 189-237 (254)
16 COG5246 PRP11 Splicing factor 84.6 0.66 1.4E-05 41.9 2.2 37 6-43 49-85 (222)
17 PF15232 DUF4585: Domain of un 84.0 0.7 1.5E-05 35.9 1.8 27 98-124 9-41 (75)
18 KOG0796 Spliceosome subunit [R 81.4 2 4.3E-05 41.4 4.2 46 9-54 185-234 (319)
19 PF04988 AKAP95: A-kinase anch 80.9 3.7 8E-05 36.2 5.3 46 11-56 92-137 (165)
20 PLN02748 tRNA dimethylallyltra 79.8 1.3 2.8E-05 44.3 2.5 33 10-42 418-450 (468)
21 COG5188 PRP9 Splicing factor 3 78.7 0.87 1.9E-05 44.8 0.9 37 7-45 235-272 (470)
22 TIGR03696 Rhs_assc_core RHS re 75.9 2.2 4.8E-05 32.0 2.2 31 105-137 20-50 (76)
23 PF00397 WW: WW domain; Inter 74.4 2.7 6E-05 26.5 2.0 14 101-114 9-24 (31)
24 KOG3032 Uncharacterized conser 73.3 2.6 5.5E-05 39.4 2.4 35 6-43 31-66 (264)
25 TIGR03836 termin_org_HMW1 cyta 67.5 4.4 9.6E-05 31.7 2.2 25 101-125 38-65 (82)
26 PF07535 zf-DBF: DBF zinc fing 65.2 4.5 9.7E-05 28.9 1.7 29 8-40 3-31 (49)
27 smart00586 ZnF_DBF Zinc finger 63.7 4.3 9.3E-05 29.1 1.4 27 8-38 3-29 (49)
28 PF14968 CCDC84: Coiled coil p 59.2 7.8 0.00017 37.5 2.7 35 12-50 1-35 (336)
29 PF02426 MIase: Muconolactone 58.3 13 0.00028 29.6 3.4 32 220-251 14-45 (91)
30 KOG3408 U1-like Zn-finger-cont 53.1 8 0.00017 32.9 1.5 32 8-40 55-86 (129)
31 TIGR03221 muco_delta muconolac 52.0 19 0.00041 28.9 3.4 32 220-251 13-44 (90)
32 PF08265 YL1_C: YL1 nuclear pr 50.3 7.1 0.00015 25.3 0.6 12 116-127 12-23 (30)
33 PF13904 DUF4207: Domain of un 50.2 1E+02 0.0022 28.5 8.3 50 62-120 212-262 (264)
34 smart00456 WW Domain with 2 co 49.1 17 0.00036 22.4 2.2 13 101-114 9-23 (32)
35 PF15232 DUF4585: Domain of un 47.8 12 0.00026 29.3 1.6 26 108-133 11-42 (75)
36 PF09783 Vac_ImportDeg: Vacuol 45.6 9.9 0.00022 33.6 1.0 19 106-124 142-167 (176)
37 KOG4722 Zn-finger protein [Gen 45.3 13 0.00028 37.8 1.8 35 10-45 493-527 (672)
38 cd00201 WW Two conserved trypt 43.4 24 0.00051 21.2 2.2 13 101-114 8-22 (31)
39 PTZ00448 hypothetical protein; 42.1 15 0.00033 36.2 1.7 40 10-50 314-353 (373)
40 PF11559 ADIP: Afadin- and alp 41.1 1.6E+02 0.0035 24.3 7.6 49 27-75 44-92 (151)
41 PF09328 Phytochelatin_C: Doma 40.6 30 0.00066 32.6 3.4 33 205-242 64-96 (264)
42 smart00597 ZnF_TTF zinc finger 39.3 27 0.00058 27.6 2.4 37 4-40 19-72 (90)
43 PF13909 zf-H2C2_5: C2H2-type 37.9 15 0.00033 21.3 0.7 20 11-32 1-20 (24)
44 PRK00888 ftsB cell division pr 36.5 2.2E+02 0.0049 22.8 7.5 54 29-84 21-74 (105)
45 PF02710 Hema_HEFG: Hemaggluti 36.1 20 0.00042 31.1 1.3 13 105-117 99-111 (144)
46 COG5200 LUC7 U1 snRNP componen 35.9 30 0.00065 32.2 2.5 31 10-40 185-217 (258)
47 PF09679 TraQ: Type-F conjugat 32.6 44 0.00095 27.0 2.7 24 220-243 65-88 (93)
48 PF04988 AKAP95: A-kinase anch 29.7 65 0.0014 28.6 3.5 29 11-40 1-29 (165)
49 KOG0551 Hsp90 co-chaperone CNS 29.3 95 0.0021 30.8 4.9 61 12-74 175-237 (390)
50 PF07225 NDUF_B4: NADH-ubiquin 29.2 72 0.0016 26.9 3.5 22 220-241 20-41 (125)
51 PLN02976 amine oxidase 28.2 42 0.00091 38.9 2.5 20 220-239 1427-1446(1713)
52 PF02701 zf-Dof: Dof domain, z 26.9 16 0.00035 27.6 -0.6 20 4-23 24-43 (63)
53 PF12848 ABC_tran_2: ABC trans 26.7 1.8E+02 0.0038 21.4 5.0 38 37-74 12-49 (85)
54 PRK06800 fliH flagellar assemb 26.0 3.3E+02 0.0071 25.1 7.3 44 28-71 38-81 (228)
55 PF04568 IATP: Mitochondrial A 25.9 2.9E+02 0.0063 22.4 6.4 39 33-71 55-98 (100)
56 COG4829 CatC1 Muconolactone de 25.8 71 0.0015 26.0 2.8 31 221-251 15-45 (98)
57 PF08644 SPT16: FACT complex s 24.0 63 0.0014 28.0 2.4 35 26-60 69-103 (152)
58 PF13894 zf-C2H2_4: C2H2-type 23.5 39 0.00084 18.5 0.7 21 11-32 1-21 (24)
59 KOG1924 RhoA GTPase effector D 23.3 8.9E+02 0.019 27.1 10.9 11 59-69 491-501 (1102)
60 COG5263 FOG: Glucan-binding do 23.1 45 0.00098 32.2 1.4 37 96-136 172-208 (313)
61 COG5112 UFD2 U1-like Zn-finger 23.1 42 0.00091 28.2 1.0 31 9-40 54-84 (126)
62 PF04977 DivIC: Septum formati 22.7 2.9E+02 0.0063 19.7 6.9 52 29-82 11-62 (80)
63 KOG0154 RNA-binding protein RB 22.5 74 0.0016 32.2 2.9 43 92-134 232-276 (573)
64 PF06696 Strep_SA_rep: Strepto 22.5 79 0.0017 19.9 2.0 13 70-82 4-16 (25)
65 KOG3204 60S ribosomal protein 21.1 3.4E+02 0.0074 24.8 6.5 49 26-78 133-181 (197)
66 PF11240 DUF3042: Protein of u 20.2 81 0.0017 23.2 1.9 17 223-239 37-53 (54)
No 1
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=100.00 E-value=2.8e-45 Score=338.21 Aligned_cols=237 Identities=33% Similarity=0.449 Sum_probs=200.6
Q ss_pred CcchhhhcCccccccccccccCChhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025398 1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQIEAKAKRSYQKDL 80 (253)
Q Consensus 1 MtEYWkS~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lrei~k~~~~keKe~~~~~~eL~rIEaaA~~AY~kDl 80 (253)
||||||||+|+|||||+|||.||++||++||+|.||++||+++|++|++++..++++.+++..+|++||++|+++|++||
T Consensus 1 MaeYWkS~~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kritdi~rks~~kekeekKls~~la~mEaaA~~syaedl 80 (336)
T KOG0150|consen 1 MAEYWKSQPKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKRITDIHRKSLKKEKEEKKLSKELAAMEAAASASYAEDL 80 (336)
T ss_pred CchhhhhccchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-hhhhhccccccCCCCCceeeCCcceeEeCCCceEecC--CCCceeeCCC-----CccccccchhhcccccCCCCCCC
Q 025398 81 AN-QEARNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDP--KSGFYYSDAI-----GNWVTQEEAYAAIPASLGSKHRP 152 (253)
Q Consensus 81 ~~-~~~~~~~~~~~~~~s~~vyD~sSGYYYd~~TG~YYDp--~tg~YY~~~t-----g~W~~~~e~Y~~~~~~~~~~~~~ 152 (253)
.. +.-..-.++.+...++|.-++.||++++...|.-+|| -+|+++++.. ..|++.++.+........+.. +
T Consensus 81 ~~~g~~~e~~~psk~r~s~tma~s~ss~~~~~~r~~q~d~~~vsg~~~s~a~q~~~~~g~v~~~e~~~~~k~wv~~Kn-e 159 (336)
T KOG0150|consen 81 SYEGLKKEIPGPSKLRPSKTMATSDSSADINTKRGRQDDPPNVSGTHDSPALQEYIPTGLVTKDEANAETKEWVEGKN-E 159 (336)
T ss_pred hhcchhhhcCCCccCCccccccccccccccccccccccCcccccccccCccchhhccccccchhhhhhhhhhcccccC-C
Confidence 98 3322333445577889999999999999999999999 8999999443 468888888776554443322 1
Q ss_pred CCCCCCCccCCcccccccCccCCCCCCCCccccccCCCCCcccCCCcccccc--ccccccccccccCCCCCCHHHHHHHH
Q 025398 153 TMKHPFPAFGGGSIVENKDSAKSQNGPARGPVVSSSLNPMRSVKGAPSSLAV--GKRKREDNKLKKMAKPVSKEEAAAIK 230 (253)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~p~~~~kga~s~~a~--~krkr~~~~~~~~~~~~s~ee~~al~ 230 (253)
...+ .++. ..++..-.-+|+...++.++|.+..|++-.++.. ++|+|++++.. .++.|++++++
T Consensus 160 s~~~--yy~n--------~~t~esvwk~P~~~~ts~~~~kr~nk~~q~avDe~nnsr~~qe~~~r----k~~ee~k~~~k 225 (336)
T KOG0150|consen 160 SGPT--YYSN--------KRTNESVWKPPRISFTSRLEPKRANKVPQLAVDEGNNSRERQESKER----KVVEEEKASGK 225 (336)
T ss_pred CCCC--ccee--------cCCCccccCCCCcccccccChhhhcccchhcccccchhhhhhhcccc----hhhHHHHhhhh
Confidence 1111 1221 1455666788999999999999999997777666 67888888888 89999999999
Q ss_pred HHHHHHHHHHHHhhhhcccc-cC
Q 025398 231 AREAAKKRVEEREKQLLGLY-HS 252 (253)
Q Consensus 231 areaarkrv~~r~~~~~gly-~~ 252 (253)
+||++..|+.|+++.|+||| ++
T Consensus 226 ~re~~s~r~sDp~kel~~~~erp 248 (336)
T KOG0150|consen 226 EREKSSDRESDPPKELLGLYERP 248 (336)
T ss_pred hhhhhhcccCCChHHHHHHhhcc
Confidence 99999999999999999999 44
No 2
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=99.54 E-value=1.9e-15 Score=101.78 Aligned_cols=37 Identities=35% Similarity=0.795 Sum_probs=23.0
Q ss_pred cCccccccccccccCChhh-hhhhhchhhHHHHHHHHH
Q 025398 8 QGNKWCDFCKIYISNNPSS-IRNHDLGQRHKENVQKKL 44 (253)
Q Consensus 8 ~~K~yCdyCkvwi~dn~~S-ir~HE~G~kHk~NV~k~L 44 (253)
+||||||||++||++|.++ +++||+|.+|++||+++|
T Consensus 1 m~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~y 38 (38)
T PF06220_consen 1 MPRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRYY 38 (38)
T ss_dssp --S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHHT
T ss_pred CcCeecccccceecCCChHHHHHhhccHHHHHHHHHhC
Confidence 5899999999999877755 599999999999999875
No 3
>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]
Probab=99.21 E-value=1.5e-11 Score=106.20 Aligned_cols=43 Identities=28% Similarity=0.662 Sum_probs=39.2
Q ss_pred cCccccccccccccCChhhh-hhhhchhhHHHHHHHHHHHHHHH
Q 025398 8 QGNKWCDFCKIYISNNPSSI-RNHDLGQRHKENVQKKLADMRKE 50 (253)
Q Consensus 8 ~~K~yCdyCkvwi~dn~~Si-r~HE~G~kHk~NV~k~Lrei~k~ 50 (253)
.+|||||||++||++|.+|+ +.|..|++|+.||+.++....++
T Consensus 1 MpRYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~ee 44 (165)
T KOG3454|consen 1 MPRYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWMEE 44 (165)
T ss_pred CCcchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 47999999999999998887 69999999999999999988753
No 4
>COG5136 U1 snRNP-specific protein C [RNA processing and modification]
Probab=98.52 E-value=9e-08 Score=83.30 Aligned_cols=42 Identities=17% Similarity=0.407 Sum_probs=38.8
Q ss_pred cCccccccccccccCChhhh-hhhhchhhHHHHHHHHHHHHHH
Q 025398 8 QGNKWCDFCKIYISNNPSSI-RNHDLGQRHKENVQKKLADMRK 49 (253)
Q Consensus 8 ~~K~yCdyCkvwi~dn~~Si-r~HE~G~kHk~NV~k~Lrei~k 49 (253)
++|||||||.+||++|..|+ +.|..|++|.-+++.+++++-+
T Consensus 1 MpRY~CeyC~~~LthD~lsvRk~H~~G~~H~~~~~dYY~~~a~ 43 (188)
T COG5136 1 MPRYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRKDYYMEMAE 43 (188)
T ss_pred CcchHHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 47999999999999999887 6999999999999999998766
No 5
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=98.46 E-value=7.5e-08 Score=61.51 Aligned_cols=33 Identities=33% Similarity=0.769 Sum_probs=30.1
Q ss_pred CccccccccccccCChhhhhhhhchhhHHHHHHH
Q 025398 9 GNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQK 42 (253)
Q Consensus 9 ~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k 42 (253)
+++||++|++|+. +..+.++|..|++|+.||++
T Consensus 2 ~~~~C~~C~~~~~-~~~~~~~H~~gk~H~~~~~~ 34 (35)
T smart00451 2 GGFYCKLCNVTFT-DEISVEAHLKGKKHKKNVKK 34 (35)
T ss_pred cCeEccccCCccC-CHHHHHHHHChHHHHHHHHc
Confidence 6799999999999 66778999999999999975
No 6
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=96.99 E-value=0.00036 Score=42.88 Aligned_cols=27 Identities=30% Similarity=0.742 Sum_probs=23.6
Q ss_pred ccccccccccccCChhhhhhhhchhhHH
Q 025398 10 NKWCDFCKIYISNNPSSIRNHDLGQRHK 37 (253)
Q Consensus 10 K~yCdyCkvwi~dn~~Sir~HE~G~kHk 37 (253)
++||++|+.++.+. ...+.|.+|++||
T Consensus 1 q~~C~~C~k~f~~~-~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 1 QFYCDACDKYFSSE-NQLKQHMKSKKHK 27 (27)
T ss_dssp -CBBTTTTBBBSSH-HHHHCCTTSHHHH
T ss_pred CCCcccCCCCcCCH-HHHHHHHccCCCC
Confidence 48999999999865 7789999999996
No 7
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]
Probab=96.87 E-value=0.0029 Score=56.05 Aligned_cols=36 Identities=22% Similarity=0.601 Sum_probs=30.3
Q ss_pred CccccccccccccCChhhhhhhhchhhHHHHHHHHHH
Q 025398 9 GNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLA 45 (253)
Q Consensus 9 ~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lr 45 (253)
+-|||++|+|-|.|. ++.-.|-+|++|+.|+.--++
T Consensus 74 ~GyyCdVCdcvvKDS-inflDHiNgKkHqrnlgmsm~ 109 (193)
T KOG4727|consen 74 GGYYCDVCDCVVKDS-INFLDHINGKKHQRNLGMSMR 109 (193)
T ss_pred Cceeeeecceeehhh-HHHHHHhccHHHHHHHhhhhc
Confidence 469999999999976 666789999999999876554
No 8
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.35 E-value=0.0014 Score=38.92 Aligned_cols=25 Identities=32% Similarity=0.688 Sum_probs=22.5
Q ss_pred cccccccccccCChhhhhhhhchhhH
Q 025398 11 KWCDFCKIYISNNPSSIRNHDLGQRH 36 (253)
Q Consensus 11 ~yCdyCkvwi~dn~~Sir~HE~G~kH 36 (253)
++|+.|++.+.+ ..+.+.|.+|.+|
T Consensus 1 ~~C~~C~~~f~s-~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSS-ENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESS-HHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCC-HHHHHHHHCcCCC
Confidence 689999999985 4889999999998
No 9
>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]
Probab=94.98 E-value=0.019 Score=57.48 Aligned_cols=56 Identities=27% Similarity=0.481 Sum_probs=47.1
Q ss_pred ccCCCCCceeeCCcceeEeCCCceEecCCCCceeeCCCCc---cccccchhhcccccCC
Q 025398 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLG 147 (253)
Q Consensus 92 ~~~~~s~~vyD~sSGYYYd~~TG~YYDp~tg~YY~~~tg~---W~~~~e~Y~~~~~~~~ 147 (253)
+.++...+.||++++||+++.+.+|||..+++||+..+++ |+.....|+++..++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~d~~~s~~~~~~~~~~ 282 (573)
T KOG0154|consen 224 PTPKKDEGQYDETDEYYEDPETSVYYDTDSGLYFNDASSQYLYGDDEQSDYFYAKLSPS 282 (573)
T ss_pred cCCcccccccccccCceecCCccceeeccccceeccccccccccCCCcceeeecccccc
Confidence 3366788999999999999999999999999999999997 7777777777444443
No 10
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=0.19 Score=50.49 Aligned_cols=39 Identities=26% Similarity=0.554 Sum_probs=30.7
Q ss_pred ccccccccccccCChhhhhhhhchhhHHHHHHHHHHHHHH
Q 025398 10 NKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRK 49 (253)
Q Consensus 10 K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lrei~k 49 (253)
-.||-+|+--+..- -.++|||++++|++||.+.=.+|..
T Consensus 292 ~lyC~vCnKsFKse-Kq~kNHEnSKKHkenv~eLrqemEE 330 (508)
T KOG0717|consen 292 VLYCVVCNKSFKSE-KQLKNHENSKKHKENVAELRQEMEE 330 (508)
T ss_pred ceEEeeccccccch-HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 48999999888744 4689999999999998875444433
No 11
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=90.58 E-value=0.17 Score=45.84 Aligned_cols=45 Identities=29% Similarity=0.496 Sum_probs=35.7
Q ss_pred hcCccccccccccccCChhhhhhhhchhhHHHHHHHHHHHHHHHHH
Q 025398 7 SQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENA 52 (253)
Q Consensus 7 S~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lrei~k~~~ 52 (253)
+.++|-|..|...- +|-.|.-.|-.|++|+.||.++-..+.+++.
T Consensus 50 h~G~yeCkLClT~H-~ne~Syl~HtqGKKHq~Nlarraa~e~k~s~ 94 (222)
T KOG0227|consen 50 HLGKYECKLCLTLH-NNEGSYLAHTQGKKHQTNLARRAAKEAKESP 94 (222)
T ss_pred cCcceeehhhhhhh-cchhhhhhhhccchhhHHHHHHHHHHhhcCc
Confidence 45789999998643 4558999999999999999987766665543
No 12
>KOG2950 consensus Uncharacterized protein involved in protein-protein interaction, contains polyproline-binding GYF domain [General function prediction only]
Probab=90.25 E-value=0.077 Score=51.16 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=36.5
Q ss_pred CCCceeeCCcceeEeCCCceEecCCCCceeeCCCCccccc
Q 025398 96 HEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQ 135 (253)
Q Consensus 96 ~s~~vyD~sSGYYYd~~TG~YYDp~tg~YY~~~tg~W~~~ 135 (253)
...|.||...+|++=++.+++|++++|||+++.+..|...
T Consensus 291 efkwe~d~~~~yGp~ts~~m~~w~~egyf~~~v~~r~~~~ 330 (348)
T KOG2950|consen 291 EFKWEFDEDEYYGPYTSSEMQYWQNEGYFKNAVYVRFHDE 330 (348)
T ss_pred eeEeecccccccccccHHHHhhhhccCccccceeEEeecC
Confidence 3468899999999999999999999999999999999884
No 13
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=89.09 E-value=0.14 Score=46.49 Aligned_cols=29 Identities=34% Similarity=0.629 Sum_probs=22.8
Q ss_pred ccccccccccccCChhhhhhhhchhhHHHHH
Q 025398 10 NKWCDFCKIYISNNPSSIRNHDLGQRHKENV 40 (253)
Q Consensus 10 K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV 40 (253)
-+||+.|+++|.+++-+ +|-.+.-|+-|+
T Consensus 84 lfyCE~Cd~~ip~~~~s--nH~tSttHllsl 112 (223)
T KOG2384|consen 84 LFYCEVCDIYIPNSKKS--NHFTSTTHLLSL 112 (223)
T ss_pred cchhhhhhhhccCCCCc--cchhhHHHHhhh
Confidence 47999999999998654 577777785443
No 14
>PF14968 CCDC84: Coiled coil protein 84
Probab=87.25 E-value=0.43 Score=45.99 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=36.1
Q ss_pred hcCccccccccccccCChhh-----hhhhhchhhHHHHHHHHHHHHHHH
Q 025398 7 SQGNKWCDFCKIYISNNPSS-----IRNHDLGQRHKENVQKKLADMRKE 50 (253)
Q Consensus 7 S~~K~yCdyCkvwi~dn~~S-----ir~HE~G~kHk~NV~k~Lrei~k~ 50 (253)
+..++||-||.+=|.++..+ .-.|-.+.-|+.||.+|+.+=+-+
T Consensus 55 ~~~~fWC~fC~~ev~~~~s~~~~~~ai~HLaS~eH~k~vk~F~w~~g~~ 103 (336)
T PF14968_consen 55 HRNRFWCVFCDCEVREHDSSFACGGAIEHLASPEHRKNVKKFWWKNGAD 103 (336)
T ss_pred ccceeEeeCccchhhhccchhhhccHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 45689999999999988443 358999999999999999864443
No 15
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=86.05 E-value=1.1 Score=41.36 Aligned_cols=45 Identities=20% Similarity=0.533 Sum_probs=32.8
Q ss_pred Ccccccccccccc--CChhhhhhhhchhhHHH--HHHHHHHHHHHHHHH
Q 025398 9 GNKWCDFCKIYIS--NNPSSIRNHDLGQRHKE--NVQKKLADMRKENAA 53 (253)
Q Consensus 9 ~K~yCdyCkvwi~--dn~~Sir~HE~G~kHk~--NV~k~Lrei~k~~~~ 53 (253)
.-.-|++|-.||. |+..=+..|-.|+.|.+ .|+..|.+|......
T Consensus 189 kl~VCeVCGA~Ls~~D~d~RladH~~GK~HlGy~~IR~~l~el~e~~~~ 237 (254)
T PF03194_consen 189 KLEVCEVCGAFLSVGDNDRRLADHFGGKQHLGYAKIREKLKELKEKREE 237 (254)
T ss_pred CccchhhhhhHHhccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 3478999999986 44344689999999997 456667666665444
No 16
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=84.61 E-value=0.66 Score=41.94 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=30.9
Q ss_pred hhcCccccccccccccCChhhhhhhhchhhHHHHHHHH
Q 025398 6 VSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKK 43 (253)
Q Consensus 6 kS~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~ 43 (253)
-+.+++-|..|+.--.+ -+|.-.|-.|++|+.|+.++
T Consensus 49 nh~Gk~vC~LC~T~H~~-e~Sy~~H~~GKKH~~n~~rr 85 (222)
T COG5246 49 NHTGKYVCLLCKTKHLT-EMSYVKHREGKKHKENSSRR 85 (222)
T ss_pred cCCCcEEeeeecccccc-HHHHHHhhccchhhhhHHHH
Confidence 35679999999875443 37889999999999999988
No 17
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=83.96 E-value=0.7 Score=35.93 Aligned_cols=27 Identities=37% Similarity=0.647 Sum_probs=14.2
Q ss_pred CceeeCCcceeE--e----CCCceEecCCCCce
Q 025398 98 KWDYDGTSGYYY--N----ESNGLYYDPKSGFY 124 (253)
Q Consensus 98 ~~vyD~sSGYYY--d----~~TG~YYDp~tg~Y 124 (253)
.---|+.||=|| | +.+..+|||.||-|
T Consensus 9 KvL~DP~SG~Yy~vd~P~Qp~~k~lfDPETGqY 41 (75)
T PF15232_consen 9 KVLQDPESGQYYVVDAPVQPKTKTLFDPETGQY 41 (75)
T ss_pred cEeecCCCCCEEEEecCCCcceeeeecCCCCcE
Confidence 345688998444 2 23344455544443
No 18
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=81.43 E-value=2 Score=41.37 Aligned_cols=46 Identities=26% Similarity=0.550 Sum_probs=34.1
Q ss_pred Ccccccccccccc--CChhhhhhhhchhhHHHH--HHHHHHHHHHHHHHH
Q 025398 9 GNKWCDFCKIYIS--NNPSSIRNHDLGQRHKEN--VQKKLADMRKENAAK 54 (253)
Q Consensus 9 ~K~yCdyCkvwi~--dn~~Sir~HE~G~kHk~N--V~k~Lrei~k~~~~k 54 (253)
+---|++|-+||. |+..=|..|-+|+-|.+- |+.+|.+|.+....-
T Consensus 185 kl~VCeVCGa~L~~~D~d~RlaDHf~GKlHlGy~~iR~~l~eLk~~~~~~ 234 (319)
T KOG0796|consen 185 KLRVCEVCGAFLSVNDADRRLADHFGGKLHLGYVLIREKLAELKKEKAKR 234 (319)
T ss_pred hhhHHHhhhHHHhccchHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456999999988 444456899999999985 456777777764443
No 19
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=80.86 E-value=3.7 Score=36.21 Aligned_cols=46 Identities=20% Similarity=0.452 Sum_probs=40.4
Q ss_pred cccccccccccCChhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 025398 11 KWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEK 56 (253)
Q Consensus 11 ~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lrei~k~~~~keK 56 (253)
-.|--|++||..-..+|+.|-.+.-|..|-+.+.-++++...--.+
T Consensus 92 ~hCsACd~~IP~~~~~vQ~Hl~S~~H~~Nrr~~~eq~Kr~sl~vA~ 137 (165)
T PF04988_consen 92 AHCSACDVFIPMQHSSVQKHLKSQDHNKNRRAMMEQSKRSSLSVAR 137 (165)
T ss_pred hhhhHhhhhccCcHHHHHHHhccHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999988888887665544
No 20
>PLN02748 tRNA dimethylallyltransferase
Probab=79.81 E-value=1.3 Score=44.27 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=24.1
Q ss_pred ccccccccccccCChhhhhhhhchhhHHHHHHH
Q 025398 10 NKWCDFCKIYISNNPSSIRNHDLGQRHKENVQK 42 (253)
Q Consensus 10 K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k 42 (253)
++.|+.|+.=+-...-....|-.|++|+.+|+.
T Consensus 418 ~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~ 450 (468)
T PLN02748 418 QYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQR 450 (468)
T ss_pred cccccCCCCcccCCHHHHHHHhcchHHHHHHhH
Confidence 456999996211222489999999999988774
No 21
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=78.69 E-value=0.87 Score=44.81 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=30.5
Q ss_pred hcCccccccccccccCChhhh-hhhhchhhHHHHHHHHHH
Q 025398 7 SQGNKWCDFCKIYISNNPSSI-RNHDLGQRHKENVQKKLA 45 (253)
Q Consensus 7 S~~K~yCdyCkvwi~dn~~Si-r~HE~G~kHk~NV~k~Lr 45 (253)
+.++.||.+|.-|+... ++ ..|-.|++|..|++++-.
T Consensus 235 ~~~~~YC~~C~r~f~~~--~VFe~Hl~gK~H~k~~~~~~~ 272 (470)
T COG5188 235 WFPKVYCVKCGREFSRS--KVFEYHLEGKRHCKEGQGKEE 272 (470)
T ss_pred hccceeeHhhhhHhhhh--HHHHHHHhhhhhhhhhhhhhH
Confidence 56899999999999854 44 899999999999876533
No 22
>TIGR03696 Rhs_assc_core RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.
Probab=75.94 E-value=2.2 Score=31.98 Aligned_cols=31 Identities=32% Similarity=0.898 Sum_probs=23.9
Q ss_pred cceeEeCCCceEecCCCCceeeCCCCccccccc
Q 025398 105 SGYYYNESNGLYYDPKSGFYYSDAIGNWVTQEE 137 (253)
Q Consensus 105 SGYYYd~~TG~YYDp~tg~YY~~~tg~W~~~~e 137 (253)
+|.++|..||++| .--=||+..+|.|.+.|.
T Consensus 20 ~G~~~d~~tgl~~--~~~R~Ydp~~Grf~~~DP 50 (76)
T TIGR03696 20 TGQYYDAETGLYY--NGARYYDPELGRFLSPDP 50 (76)
T ss_pred CCEeEhhhcCCee--eCCEeEeCCCCceeccCc
Confidence 3678888888766 444788999999999873
No 23
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=74.38 E-value=2.7 Score=26.53 Aligned_cols=14 Identities=57% Similarity=1.234 Sum_probs=9.8
Q ss_pred eeCCcc--eeEeCCCc
Q 025398 101 YDGTSG--YYYNESNG 114 (253)
Q Consensus 101 yD~sSG--YYYd~~TG 114 (253)
+|+.+| ||||..||
T Consensus 9 ~~~~~g~~YY~N~~t~ 24 (31)
T PF00397_consen 9 FDPDSGRPYYYNHETG 24 (31)
T ss_dssp EETTTSEEEEEETTTT
T ss_pred EcCCCCCEEEEeCCCC
Confidence 665466 77877777
No 24
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.33 E-value=2.6 Score=39.37 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=28.8
Q ss_pred hhcCccccccccccccCChhhh-hhhhchhhHHHHHHHH
Q 025398 6 VSQGNKWCDFCKIYISNNPSSI-RNHDLGQRHKENVQKK 43 (253)
Q Consensus 6 kS~~K~yCdyCkvwi~dn~~Si-r~HE~G~kHk~NV~k~ 43 (253)
.+.+.--|-+|++-|. ++| ..|-+|++|.++|...
T Consensus 31 n~sgql~C~vCn~piK---p~lW~vHvnsKkHre~id~l 66 (264)
T KOG3032|consen 31 NESGQLVCRVCNVPIK---PSLWDVHVNSKKHREAIDSL 66 (264)
T ss_pred CCCCCeeEEEecCccc---HHHHHHHhccHHHHHHHHHH
Confidence 3456678999999999 555 9999999999998653
No 25
>TIGR03836 termin_org_HMW1 cytadherence high molecular weight protein 1 N-terminal region. This model describes the N-terminal region of the Mycoplasma cytadherence protein HMW1, up to but not including the first EAGR box domain. The apparent orthologs in different Mycoplasma species differ profoundly in archictecture C-terminally to the region described here.
Probab=67.46 E-value=4.4 Score=31.68 Aligned_cols=25 Identities=48% Similarity=1.103 Sum_probs=16.2
Q ss_pred eeCC-ccee--EeCCCceEecCCCCcee
Q 025398 101 YDGT-SGYY--YNESNGLYYDPKSGFYY 125 (253)
Q Consensus 101 yD~s-SGYY--Yd~~TG~YYDp~tg~YY 125 (253)
||.. .||| ||+.||+||||--..=|
T Consensus 38 yDaDgNgYYIafn~EtgvyydPYgdtEy 65 (82)
T TIGR03836 38 YDADGNGYYIAFNPETGVYYDPYGDTEY 65 (82)
T ss_pred EecCCCEEEEEecCCCceEecCCCccee
Confidence 6654 3676 68888888887444333
No 26
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=65.24 E-value=4.5 Score=28.92 Aligned_cols=29 Identities=14% Similarity=0.524 Sum_probs=23.3
Q ss_pred cCccccccccccccCChhhhhhhhchhhHHHHH
Q 025398 8 QGNKWCDFCKIYISNNPSSIRNHDLGQRHKENV 40 (253)
Q Consensus 8 ~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV 40 (253)
...-||+.|.+-.. ++..|-.+.+|+.=+
T Consensus 3 ~k~GYCE~C~~ky~----~l~~Hi~s~~Hr~FA 31 (49)
T PF07535_consen 3 KKPGYCENCRVKYD----DLEEHIQSEKHRKFA 31 (49)
T ss_pred CCCccCccccchhh----hHHHHhCCHHHHHHH
Confidence 34679999999886 588999999996533
No 27
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=63.73 E-value=4.3 Score=29.14 Aligned_cols=27 Identities=19% Similarity=0.580 Sum_probs=22.0
Q ss_pred cCccccccccccccCChhhhhhhhchhhHHH
Q 025398 8 QGNKWCDFCKIYISNNPSSIRNHDLGQRHKE 38 (253)
Q Consensus 8 ~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~ 38 (253)
.+.-||+.|.+-.. ....|-.+.+|+.
T Consensus 3 ~k~GYCE~Cr~kfd----~l~~Hi~s~~Hr~ 29 (49)
T smart00586 3 KKPGYCENCREKYD----DLETHLLSEKHRR 29 (49)
T ss_pred CCCcccccHhHHHh----hHHHHhccHHHHH
Confidence 34679999999876 5678999999964
No 28
>PF14968 CCDC84: Coiled coil protein 84
Probab=59.18 E-value=7.8 Score=37.52 Aligned_cols=35 Identities=23% Similarity=0.576 Sum_probs=28.1
Q ss_pred ccccccccccCChhhhhhhhchhhHHHHHHHHHHHHHHH
Q 025398 12 WCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKE 50 (253)
Q Consensus 12 yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lrei~k~ 50 (253)
||.+|++ |-..-+.|-=+.+||.+++..|..++.+
T Consensus 1 yC~vCr~----~h~~gr~H~Y~~~Hq~~L~~~L~rf~~K 35 (336)
T PF14968_consen 1 YCEVCRR----NHDQGRRHVYSPKHQKSLSAFLSRFRSK 35 (336)
T ss_pred CcchhhC----cccccCCCccCHHHHHHHHHHHHHHHHH
Confidence 7999986 2234889999999999999998876654
No 29
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=58.30 E-value=13 Score=29.64 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 025398 220 PVSKEEAAAIKAREAAKKRVEEREKQLLGLYH 251 (253)
Q Consensus 220 ~~s~ee~~al~areaarkrv~~r~~~~~gly~ 251 (253)
.++.+|.+.++|||+|+-+=-+|.--+.+||+
T Consensus 14 ~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr 45 (91)
T PF02426_consen 14 DMPPEEVDRLKAREKARAQELQRQGKWRHLWR 45 (91)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEE
Confidence 58999999999999999998888888888875
No 30
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=53.09 E-value=8 Score=32.87 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=26.4
Q ss_pred cCccccccccccccCChhhhhhhhchhhHHHHH
Q 025398 8 QGNKWCDFCKIYISNNPSSIRNHDLGQRHKENV 40 (253)
Q Consensus 8 ~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV 40 (253)
.+-|||--|.-++.|. ..++.|-.|+.||.-|
T Consensus 55 ~GqfyCi~CaRyFi~~-~~l~~H~ktK~HKrRv 86 (129)
T KOG3408|consen 55 GGQFYCIECARYFIDA-KALKTHFKTKVHKRRV 86 (129)
T ss_pred Cceeehhhhhhhhcch-HHHHHHHhccHHHHHH
Confidence 3569999999999866 5789999999997544
No 31
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=52.00 E-value=19 Score=28.91 Aligned_cols=32 Identities=41% Similarity=0.438 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 025398 220 PVSKEEAAAIKAREAAKKRVEEREKQLLGLYH 251 (253)
Q Consensus 220 ~~s~ee~~al~areaarkrv~~r~~~~~gly~ 251 (253)
.+..++.+.++|||+|+.+=-+|+--+..|++
T Consensus 13 ~~~~~~~~~i~a~Eka~a~eLq~~Gk~~~lWR 44 (90)
T TIGR03221 13 DMPAEKAAAIKAREKAYAQELQREGKWRHLWR 44 (90)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCceEEEEE
Confidence 48999999999999999999999887777765
No 32
>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []. These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.
Probab=50.27 E-value=7.1 Score=25.33 Aligned_cols=12 Identities=50% Similarity=1.099 Sum_probs=9.1
Q ss_pred EecCCCCceeeC
Q 025398 116 YYDPKSGFYYSD 127 (253)
Q Consensus 116 YYDp~tg~YY~~ 127 (253)
|.||.||++|..
T Consensus 12 Y~DP~T~l~Y~n 23 (30)
T PF08265_consen 12 YRDPKTGLPYAN 23 (30)
T ss_pred ccCCCCCCcccC
Confidence 778888887764
No 33
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=50.20 E-value=1e+02 Score=28.51 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCceeeC-CcceeEeCCCceEecCC
Q 025398 62 ARALEQIEAKAKRSYQKDLANQEARNSNAVALNDHEKWDYDG-TSGYYYNESNGLYYDPK 120 (253)
Q Consensus 62 ~~eL~rIEaaA~~AY~kDl~~~~~~~~~~~~~~~~s~~vyD~-sSGYYYd~~TG~YYDp~ 120 (253)
+.+++.=-..|..||.+=|.+- ...+-|..-.+-||. =+|||= .+||+|+
T Consensus 212 ~~e~~eRk~~ae~A~~~Wl~~~-----~~kpkpvp~~~G~~s~Lrgt~s----~~y~NP~ 262 (264)
T PF13904_consen 212 QQEEQERKEQAEEAFQKWLKNV-----KNKPKPVPLNQGYDSTLRGTYS----PIYINPI 262 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-----ccCCCCCCcCCCCCccccCcCC----ccccCCC
Confidence 3344444455777887755541 111112234456675 667753 4555554
No 34
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=49.07 E-value=17 Score=22.36 Aligned_cols=13 Identities=46% Similarity=0.892 Sum_probs=7.1
Q ss_pred eeCCcc--eeEeCCCc
Q 025398 101 YDGTSG--YYYNESNG 114 (253)
Q Consensus 101 yD~sSG--YYYd~~TG 114 (253)
+|+. | ||||..|+
T Consensus 9 ~~~~-g~~yy~n~~t~ 23 (32)
T smart00456 9 KDPD-GRPYYYNHETK 23 (32)
T ss_pred ECCC-CCEEEEECCCC
Confidence 4555 5 55555555
No 35
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=47.79 E-value=12 Score=29.25 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=15.1
Q ss_pred eEeCCCce--Eec----CCCCceeeCCCCccc
Q 025398 108 YYNESNGL--YYD----PKSGFYYSDAIGNWV 133 (253)
Q Consensus 108 YYd~~TG~--YYD----p~tg~YY~~~tg~W~ 133 (253)
--|++||= |.| +.+..+||..||+++
T Consensus 11 L~DP~SG~Yy~vd~P~Qp~~k~lfDPETGqYV 42 (75)
T PF15232_consen 11 LQDPESGQYYVVDAPVQPKTKTLFDPETGQYV 42 (75)
T ss_pred eecCCCCCEEEEecCCCcceeeeecCCCCcEE
Confidence 35677773 233 445667777776654
No 36
>PF09783 Vac_ImportDeg: Vacuolar import and degradation protein; InterPro: IPR018618 Members of this family are involved in the negative regulation of gluconeogenesis. They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole [, ].
Probab=45.62 E-value=9.9 Score=33.56 Aligned_cols=19 Identities=47% Similarity=1.170 Sum_probs=10.3
Q ss_pred ceeE---eCCC----ceEecCCCCce
Q 025398 106 GYYY---NESN----GLYYDPKSGFY 124 (253)
Q Consensus 106 GYYY---d~~T----G~YYDp~tg~Y 124 (253)
|||| |-.+ |+|||++|.-|
T Consensus 142 GFYYI~~~~~~G~I~G~Yyh~~se~f 167 (176)
T PF09783_consen 142 GFYYICLDRSTGSIEGYYYHPNSEKF 167 (176)
T ss_pred eEEEEEEEccCCeEEEEEECCCCCcc
Confidence 6776 3333 35666665544
No 37
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=45.34 E-value=13 Score=37.81 Aligned_cols=35 Identities=26% Similarity=0.585 Sum_probs=29.1
Q ss_pred ccccccccccccCChhhhhhhhchhhHHHHHHHHHH
Q 025398 10 NKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLA 45 (253)
Q Consensus 10 K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lr 45 (253)
++-|-.|+|.|... .-+=.|..|++|+..|...|-
T Consensus 493 kkqcslcnvlisse-vylfshvkgrkhqqal~e~~~ 527 (672)
T KOG4722|consen 493 KKQCSLCNVLISSE-VYLFSHVKGRKHQQALNELLL 527 (672)
T ss_pred hhccchhhhhhhhh-hhhhhhhcchhHHHHHHHHhc
Confidence 67899999999854 445789999999999987654
No 38
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=43.36 E-value=24 Score=21.23 Aligned_cols=13 Identities=46% Similarity=1.068 Sum_probs=7.2
Q ss_pred eeCCcc--eeEeCCCc
Q 025398 101 YDGTSG--YYYNESNG 114 (253)
Q Consensus 101 yD~sSG--YYYd~~TG 114 (253)
+|.. | ||||..|+
T Consensus 8 ~~~~-g~~yy~n~~t~ 22 (31)
T cd00201 8 WDPD-GRVYYYNHNTK 22 (31)
T ss_pred ECCC-CCEEEEECCCC
Confidence 4544 4 66665555
No 39
>PTZ00448 hypothetical protein; Provisional
Probab=42.08 E-value=15 Score=36.17 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=34.6
Q ss_pred ccccccccccccCChhhhhhhhchhhHHHHHHHHHHHHHHH
Q 025398 10 NKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKE 50 (253)
Q Consensus 10 K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lrei~k~ 50 (253)
-+-|-.|.+-+ ++....|.|-.+-=|.-|+.++++.+--=
T Consensus 314 ~~tC~~C~v~F-~~~~~qR~H~KSDwHrYNLKRkl~gLppv 353 (373)
T PTZ00448 314 MLLCRKCNIQL-MDHNAFKQHYRSEWHIFNTKRNARKMEPI 353 (373)
T ss_pred Ccccccccccc-CCHHHHHHHhhhhHHHHHHHHHhcCCCCC
Confidence 47799999999 46678899999999999999999976553
No 40
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=41.15 E-value=1.6e+02 Score=24.27 Aligned_cols=49 Identities=16% Similarity=0.340 Sum_probs=42.7
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025398 27 IRNHDLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQIEAKAKRS 75 (253)
Q Consensus 27 ir~HE~G~kHk~NV~k~Lrei~k~~~~keKe~~~~~~eL~rIEaaA~~A 75 (253)
|..|.....|.+++...++.+..+...-...-++++..++..|.....+
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~ 92 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASA 92 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998888888888888888765533
No 41
>PF09328 Phytochelatin_C: Domain of unknown function (DUF1984); InterPro: IPR015407 This entry represents the C-terminal region of plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2.3.2.15 from EC), which is involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. This enzyme is required for detoxification of heavy metals such as cadmium and arsenate. The N-terminal region of phytochelatin synthase contains the active site, as well as four highly conserved cysteine residues that appear to play an important role in heavy-metal-induced phytochelatin catalysis. The C-terminal region is rich in cysteines, and may act as a metal sensor, whereby the Cys residues bind cadmium ions to bring them into closer proximity and transferring them to the activation site in the N-terminal catalytic domain []. The C-terminal region displays homology to the functional domains of metallothionein and metallochaperone.; GO: 0016756 glutathione gamma-glutamylcysteinyltransferase activity, 0046872 metal ion binding, 0010038 response to metal ion, 0046938 phytochelatin biosynthetic process
Probab=40.63 E-value=30 Score=32.64 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=26.7
Q ss_pred ccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 025398 205 GKRKREDNKLKKMAKPVSKEEAAAIKAREAAKKRVEER 242 (253)
Q Consensus 205 ~krkr~~~~~~~~~~~~s~ee~~al~areaarkrv~~r 242 (253)
-=|+.+|+..+ ||+||++.|+-.|---|.|++=
T Consensus 64 EVRR~Edg~~~-----LS~EEk~RL~lKe~VL~Qvr~T 96 (264)
T PF09328_consen 64 EVRRQEDGGSS-----LSKEEKERLALKEEVLQQVRET 96 (264)
T ss_pred eEEecccCCCC-----CCHHHHHHHHHHHHHHHHHHhc
Confidence 45777777766 9999999999999888888763
No 42
>smart00597 ZnF_TTF zinc finger in transposases and transcription factors.
Probab=39.32 E-value=27 Score=27.58 Aligned_cols=37 Identities=19% Similarity=0.614 Sum_probs=24.7
Q ss_pred hhhhcCccccccccccc--cCCh---h------------hhhhhhchhhHHHHH
Q 025398 4 YWVSQGNKWCDFCKIYI--SNNP---S------------SIRNHDLGQRHKENV 40 (253)
Q Consensus 4 YWkS~~K~yCdyCkvwi--~dn~---~------------Sir~HE~G~kHk~NV 40 (253)
|=+....-||-+|..|= .+.. . .++.|+.+..|..+.
T Consensus 19 YS~~~D~~fC~~C~lF~~~~~~~~~~f~~~Gf~nwk~~~~l~~H~~s~~H~~a~ 72 (90)
T smart00597 19 YSVEKDKAFCKACYLFRPGRDGDSDLFVTEGFCSWNVERILKQHEVSKRHRNAF 72 (90)
T ss_pred eecccCcEEEEEEEeeccCCCCCcCcccccCcCcchhhhhHHhhcCCHHHHhHH
Confidence 44677789999999992 1111 1 267788888887654
No 43
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=37.91 E-value=15 Score=21.29 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=13.1
Q ss_pred cccccccccccCChhhhhhhhc
Q 025398 11 KWCDFCKIYISNNPSSIRNHDL 32 (253)
Q Consensus 11 ~yCdyCkvwi~dn~~Sir~HE~ 32 (253)
|-|.+|. |.+. +..++.|..
T Consensus 1 y~C~~C~-y~t~-~~~l~~H~~ 20 (24)
T PF13909_consen 1 YKCPHCS-YSTS-KSNLKRHLK 20 (24)
T ss_dssp EE-SSSS--EES-HHHHHHHHH
T ss_pred CCCCCCC-CcCC-HHHHHHHHH
Confidence 4599999 7776 777888753
No 44
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.51 E-value=2.2e+02 Score=22.81 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=42.8
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025398 29 NHDLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQIEAKAKRSYQKDLANQE 84 (253)
Q Consensus 29 ~HE~G~kHk~NV~k~Lrei~k~~~~keKe~~~~~~eL~rIEaaA~~AY~kDl~~~~ 84 (253)
+.++|..+...+++.+.+++.+..+-+.+++.++.+|+++... ..|...+++.+
T Consensus 21 ~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~--~dyiEe~AR~~ 74 (105)
T PRK00888 21 FGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG--QEAIEERARNE 74 (105)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc--HHHHHHHHHHH
Confidence 4467888888999999999999999999999999999999763 24555565543
No 45
>PF02710 Hema_HEFG: Hemagglutinin domain of haemagglutinin-esterase-fusion glycoprotein; InterPro: IPR003860 Haemagglutinin-esterase fusion glycoprotein (HEF) is a multi-functional protein embedded in the viral envelope of several viruses, including influenza C virus, coronaviruses and toroviruses [, ]. HEF is required for infectivity, and functions to recognise the host cell surface receptor, to fuse the viral and host cell membranes, and to destroy the receptor upon host cell infection. The haemagglutinin region of HEF is responsible for receptor recognition and membrane fusion, and bears a strong resemblance to the sialic acid-binding haemagglutinin found in influenza A and B viruses, except that it binds 9-O-acetylsialic acid. The esterase region of HEF is responsible for the destruction of the receptor, an action that is carried out by neuraminidase in influenza A and B viruses. The esterase domain is similar in structure to Streptomyces scabies esterase, and to acetylhydrolase, thioesterase I and rhamnogalacturonan acetylesterase. The haemagglutinin-esterase glycoprotein HEF must be cleaved by the host's trypsin-like proteases to produce two peptides (HEF1 and HEF2) in order for the virus to be infectious. Once HEF is cleaved, the newly exposed N-terminal of the HEF2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the virus to infect the host cell. The haemagglutinin-esterase glycoprotein is a trimer, where each monomer is composed of three domains: an elongated stem active in membrane fusion, an esterase domain, and a receptor-binding domain, where the stem and receptor-binding domains together resemble influenza A virus haemagglutinin. Two of these domains are composed of non-contiguous sequence: the receptor-binding haemagglutinin domain is inserted into a surface loop of the esterase domain, and the esterase domain is inserted into a surface loop of the haemagglutinin stem. This entry represents the receptor-binding haemagglutinin domain of the haemagglutinin-esterase glycoprotein. More information on haemagglutinin proteins can be found at Protein of the Month: Bird Flu, Haemagglutinin [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 3I26_D 3I27_C 1FLC_E 3I1L_C 3I1K_C 3CL4_A 3CL5_A.
Probab=36.07 E-value=20 Score=31.15 Aligned_cols=13 Identities=54% Similarity=1.249 Sum_probs=6.4
Q ss_pred cceeEeCCCceEe
Q 025398 105 SGYYYNESNGLYY 117 (253)
Q Consensus 105 SGYYYd~~TG~YY 117 (253)
+|||||..||+||
T Consensus 99 f~yyY~sdtgf~y 111 (144)
T PF02710_consen 99 FQYYYNSDTGFYY 111 (144)
T ss_dssp EEEEEEETT-EEE
T ss_pred ceeEEecCceEEE
Confidence 3555555555544
No 46
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=35.89 E-value=30 Score=32.22 Aligned_cols=31 Identities=23% Similarity=0.483 Sum_probs=26.6
Q ss_pred cccccccccccc--CChhhhhhhhchhhHHHHH
Q 025398 10 NKWCDFCKIYIS--NNPSSIRNHDLGQRHKENV 40 (253)
Q Consensus 10 K~yCdyCkvwi~--dn~~Sir~HE~G~kHk~NV 40 (253)
---|++|.+++. ||..-+..|-+|+-|.+-+
T Consensus 185 lqvC~iCgayLsrlDtdrrladHf~GklHlGy~ 217 (258)
T COG5200 185 LQVCGICGAYLSRLDTDRRLADHFNGKLHLGYL 217 (258)
T ss_pred hhhhhhhhhHHHhcchhhHHHHHhccchhhhHH
Confidence 456999999998 7777788999999998865
No 47
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=32.61 E-value=44 Score=26.99 Aligned_cols=24 Identities=46% Similarity=0.518 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Q 025398 220 PVSKEEAAAIKAREAAKKRVEERE 243 (253)
Q Consensus 220 ~~s~ee~~al~areaarkrv~~r~ 243 (253)
.+|+||+++|.||.+|--+-|+-+
T Consensus 65 rv~~eer~~~ear~~a~~a~e~e~ 88 (93)
T PF09679_consen 65 RVSREERAALEARQQAICAAEKEE 88 (93)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhc
Confidence 379999999999999876655443
No 48
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=29.66 E-value=65 Score=28.57 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=22.8
Q ss_pred cccccccccccCChhhhhhhhchhhHHHHH
Q 025398 11 KWCDFCKIYISNNPSSIRNHDLGQRHKENV 40 (253)
Q Consensus 11 ~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV 40 (253)
+.|.+||.-.-+. -.|..|-.+.-|++-+
T Consensus 1 F~Cs~CKfrtf~~-~ei~~HleS~~H~E~~ 29 (165)
T PF04988_consen 1 FTCSFCKFRTFEE-KEIEKHLESKFHKETL 29 (165)
T ss_pred CccceeeeecccH-HHHHHHHccchHHHHH
Confidence 4699999766544 6899999999999543
No 49
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.34 E-value=95 Score=30.83 Aligned_cols=61 Identities=30% Similarity=0.442 Sum_probs=40.5
Q ss_pred ccccccccccCChhhhhhhhchhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025398 12 WCDFCKIYISNNPSSIRNHDLGQRHKENVQKK--LADMRKENAAKEKEHKETARALEQIEAKAKR 74 (253)
Q Consensus 12 yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~--Lrei~k~~~~keKe~~~~~~eL~rIEaaA~~ 74 (253)
||+--.--....+..|+.-.. +|+.+..+. .+++||.+...+|+.+..++.++.|+..+.+
T Consensus 175 w~ee~~~~d~e~K~~~~l~~l--~~k~~~~~L~~er~~rK~~~e~kk~~e~~krl~~a~k~r~ik 237 (390)
T KOG0551|consen 175 WCEEGLQIDDEAKKAIELRNL--IHKNDKLKLIEERDVRKKNAEEKKERESNKRLLQAIKARNIK 237 (390)
T ss_pred HHhhhhhhhHHHHHHHHHHhh--cCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555442222333444544333 677665543 4689999988888999999999999988654
No 50
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=29.16 E-value=72 Score=26.90 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 025398 220 PVSKEEAAAIKAREAAKKRVEE 241 (253)
Q Consensus 220 ~~s~ee~~al~areaarkrv~~ 241 (253)
.||.||..|...|-|-|.++-+
T Consensus 20 ~~SpE~r~a~~eR~a~Ra~Lk~ 41 (125)
T PF07225_consen 20 DVSPEERRAQQERAAIRARLKR 41 (125)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999988753
No 51
>PLN02976 amine oxidase
Probab=28.15 E-value=42 Score=38.92 Aligned_cols=20 Identities=50% Similarity=0.614 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 025398 220 PVSKEEAAAIKAREAAKKRV 239 (253)
Q Consensus 220 ~~s~ee~~al~areaarkrv 239 (253)
+||+||++|++|-||||.--
T Consensus 1427 ~~~~~~~~~~~~~~~~~~~~ 1446 (1713)
T PLN02976 1427 PMSEEEKAAFAAAEAARAAA 1446 (1713)
T ss_pred ccCHHHHHHHHHHHHHHHHH
Confidence 68999999999999988643
No 52
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=26.93 E-value=16 Score=27.65 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=16.5
Q ss_pred hhhhcCccccccccccccCC
Q 025398 4 YWVSQGNKWCDFCKIYISNN 23 (253)
Q Consensus 4 YWkS~~K~yCdyCkvwi~dn 23 (253)
|=.+||+|+|.-|+-+.+.-
T Consensus 24 y~~~QPR~~Ck~C~rywT~G 43 (63)
T PF02701_consen 24 YNLSQPRYFCKSCRRYWTHG 43 (63)
T ss_pred CCCCCcchhhHHHHHHHHhc
Confidence 45789999999999887754
No 53
>PF12848 ABC_tran_2: ABC transporter
Probab=26.67 E-value=1.8e+02 Score=21.36 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025398 37 KENVQKKLADMRKENAAKEKEHKETARALEQIEAKAKR 74 (253)
Q Consensus 37 k~NV~k~Lrei~k~~~~keKe~~~~~~eL~rIEaaA~~ 74 (253)
.+|-..||.......+..+++.+..+++++++++.+.+
T Consensus 12 ~GnY~~y~~~k~~~~~~~~~~~~~~~k~~~~l~~~i~r 49 (85)
T PF12848_consen 12 PGNYSDYLEQKEERRERQERQYEKQQKEIKRLEEFIRR 49 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34556666655555555555555555555555554433
No 54
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=25.97 E-value=3.3e+02 Score=25.12 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=34.7
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025398 28 RNHDLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQIEAK 71 (253)
Q Consensus 28 r~HE~G~kHk~NV~k~Lrei~k~~~~keKe~~~~~~eL~rIEaa 71 (253)
+.|+.=..|+..+.+.+..|+....+=+++.+.+..+-++|...
T Consensus 38 ~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~ 81 (228)
T PRK06800 38 KDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEH 81 (228)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999888777777776654444433
No 55
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=25.87 E-value=2.9e+02 Score=22.43 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 025398 33 GQRHKENVQKKLADMRKENAAKEKEHKE-----TARALEQIEAK 71 (253)
Q Consensus 33 G~kHk~NV~k~Lrei~k~~~~keKe~~~-----~~~eL~rIEaa 71 (253)
|++=+.+-..|+++..+++.++-|++-. -+++|+++|..
T Consensus 55 ~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 55 GKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666677788777777666555433 36677777764
No 56
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.79 E-value=71 Score=25.99 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 025398 221 VSKEEAAAIKAREAAKKRVEEREKQLLGLYH 251 (253)
Q Consensus 221 ~s~ee~~al~areaarkrv~~r~~~~~gly~ 251 (253)
+...-.+-++|||+|+.|-.||+-.++-|++
T Consensus 15 Mdad~~er~~A~Eka~s~~Lq~~G~~~~lWR 45 (98)
T COG4829 15 MDADAVERVRAREKARSRELQAQGKLLRLWR 45 (98)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcchHHHHHh
Confidence 5677788999999999999999988877653
No 57
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=24.03 E-value=63 Score=27.98 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=26.4
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025398 26 SIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60 (253)
Q Consensus 26 Sir~HE~G~kHk~NV~k~Lrei~k~~~~keKe~~~ 60 (253)
++.+.-...+|..+|-+.|++|+++-.+++.|+++
T Consensus 69 eltfRs~d~~~~~~v~~~Ikel~k~~~~re~E~~e 103 (152)
T PF08644_consen 69 ELTFRSKDSRHLQEVFRQIKELQKRVKQREQERRE 103 (152)
T ss_pred EEEEEeCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677889999999999999986666555433
No 58
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=23.49 E-value=39 Score=18.47 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=13.0
Q ss_pred cccccccccccCChhhhhhhhc
Q 025398 11 KWCDFCKIYISNNPSSIRNHDL 32 (253)
Q Consensus 11 ~yCdyCkvwi~dn~~Sir~HE~ 32 (253)
|-|++|...+. +..+++.|..
T Consensus 1 ~~C~~C~~~~~-~~~~l~~H~~ 21 (24)
T PF13894_consen 1 FQCPICGKSFR-SKSELRQHMR 21 (24)
T ss_dssp EE-SSTS-EES-SHHHHHHHHH
T ss_pred CCCcCCCCcCC-cHHHHHHHHH
Confidence 45999988777 4466777654
No 59
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=23.25 E-value=8.9e+02 Score=27.10 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 025398 59 KETARALEQIE 69 (253)
Q Consensus 59 ~~~~~eL~rIE 69 (253)
++++.+|+.+|
T Consensus 491 qe~qael~k~e 501 (1102)
T KOG1924|consen 491 QEAQAELQKHE 501 (1102)
T ss_pred HHHHHHHHHhh
Confidence 33344444444
No 60
>COG5263 FOG: Glucan-binding domain (YG repeat) [General function prediction only]
Probab=23.07 E-value=45 Score=32.15 Aligned_cols=37 Identities=27% Similarity=0.584 Sum_probs=0.0
Q ss_pred CCCceeeCCcceeEeCCCceEecCCCCceeeCCCCcccccc
Q 025398 96 HEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQE 136 (253)
Q Consensus 96 ~s~~vyD~sSGYYYd~~TG~YYDp~tg~YY~~~tg~W~~~~ 136 (253)
.++|+-|..++||+++++|. -.|+..++. .|.|+..+
T Consensus 172 ~~gW~~d~~~wYyl~~~~g~---m~tgw~k~~-~g~WYy~~ 208 (313)
T COG5263 172 ANGWQKDNGSWYYLKSDGGM---MKTGWVKDS-SGKWYYFG 208 (313)
T ss_pred hhhhcccCcceEEEecCCcc---cccchhhhh-cCCeEEec
No 61
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=23.06 E-value=42 Score=28.23 Aligned_cols=31 Identities=26% Similarity=0.594 Sum_probs=24.4
Q ss_pred CccccccccccccCChhhhhhhhchhhHHHHH
Q 025398 9 GNKWCDFCKIYISNNPSSIRNHDLGQRHKENV 40 (253)
Q Consensus 9 ~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV 40 (253)
+-|||--|.-++- +...+..|-.|.-|+.-+
T Consensus 54 GqhYCieCaryf~-t~~aL~~HkkgkvHkRR~ 84 (126)
T COG5112 54 GQHYCIECARYFI-TEKALMEHKKGKVHKRRA 84 (126)
T ss_pred ceeeeehhHHHHH-HHHHHHHHhccchhHHHH
Confidence 4689999998886 346678999999996543
No 62
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.69 E-value=2.9e+02 Score=19.68 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=36.2
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025398 29 NHDLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQIEAKAKRSYQKDLAN 82 (253)
Q Consensus 29 ~HE~G~kHk~NV~k~Lrei~k~~~~keKe~~~~~~eL~rIEaaA~~AY~kDl~~ 82 (253)
+...|..+...+...+.++.+.-.+-+.+.++++.+++++.. ...|-.++++
T Consensus 11 ~~~~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~--~~~~ie~~AR 62 (80)
T PF04977_consen 11 FGISGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKN--DPDYIEKVAR 62 (80)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHH
Confidence 344566677777888888888888888888888888888822 3335555554
No 63
>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]
Probab=22.54 E-value=74 Score=32.22 Aligned_cols=43 Identities=19% Similarity=0.466 Sum_probs=31.9
Q ss_pred ccCCCCCceeeCCcceeEeCCCceEecCCCCceeeCCCC--cccc
Q 025398 92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIG--NWVT 134 (253)
Q Consensus 92 ~~~~~s~~vyD~sSGYYYd~~TG~YYDp~tg~YY~~~tg--~W~~ 134 (253)
...+..++.+|+.+++|||..++|||.-.++-|...... .|+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~d~~~s~~~~ 276 (573)
T KOG0154|consen 232 QYDETDEYYEDPETSVYYDTDSGLYFNDASSQYLYGDDEQSDYFY 276 (573)
T ss_pred ccccccCceecCCccceeeccccceeccccccccccCCCcceeee
Confidence 335567788888888888888888888777777666654 4655
No 64
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=22.53 E-value=79 Score=19.87 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhh
Q 025398 70 AKAKRSYQKDLAN 82 (253)
Q Consensus 70 aaA~~AY~kDl~~ 82 (253)
.+++.+|+.||++
T Consensus 4 qakla~YqaeLa~ 16 (25)
T PF06696_consen 4 QAKLAQYQAELAR 16 (25)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3678889999987
No 65
>KOG3204 consensus 60S ribosomal protein L13a [Translation, ribosomal structure and biogenesis]
Probab=21.13 E-value=3.4e+02 Score=24.78 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=27.9
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025398 26 SIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQIEAKAKRSYQK 78 (253)
Q Consensus 26 Sir~HE~G~kHk~NV~k~Lrei~k~~~~keKe~~~~~~eL~rIEaaA~~AY~k 78 (253)
.+--||-|++|++-+ ..|.+-|+... +.--.-+++|.++-..|.+...+
T Consensus 133 G~L~~eVGWkyq~vt-atLEeKRKeK~---~~~y~kKkql~kl~~~Aekn~~k 181 (197)
T KOG3204|consen 133 GRLSHEVGWKYQAVT-ATLEEKRKEKA---KIHYQKKKQLMRLRKQAEKNVEK 181 (197)
T ss_pred ccchhhhcchhHHHH-HHHHHHHhHhh---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 346899999997654 44555555422 22222344566666666555544
No 66
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.24 E-value=81 Score=23.19 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025398 223 KEEAAAIKAREAAKKRV 239 (253)
Q Consensus 223 ~ee~~al~areaarkrv 239 (253)
+|+.-..-+|.|+|||+
T Consensus 37 ke~~~eenRkkA~RK~~ 53 (54)
T PF11240_consen 37 KEAKIEENRKKAARKRR 53 (54)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 56666678899999986
Done!