Query 025398
Match_columns 253
No_of_seqs 211 out of 315
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:29:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cw1_L U1 small nuclear ribonu 99.6 3.1E-15 1.1E-19 113.9 6.0 43 8-50 1-44 (77)
2 1zu1_A DSRBP-ZFA, RNA binding 96.9 0.00052 1.8E-08 55.0 2.9 37 6-43 89-125 (127)
3 1zu1_A DSRBP-ZFA, RNA binding 96.3 0.0018 6.2E-08 51.8 2.6 35 10-45 32-66 (127)
4 1zr9_A Zinc finger protein 593 94.8 0.012 4.1E-07 48.0 2.1 35 8-43 48-82 (124)
5 1e0n_A Hypothetical protein; Y 92.7 0.05 1.7E-06 33.3 1.8 17 98-114 2-20 (27)
6 2yrk_A Zinc finger homeobox pr 85.2 0.4 1.4E-05 34.2 2.0 36 9-45 12-47 (55)
7 4dgw_A PRE-mRNA-splicing facto 84.5 0.81 2.8E-05 43.6 4.3 33 8-42 290-323 (402)
8 2jx8_A Hpcif1, phosphorylated 69.7 2.3 8E-05 29.3 2.0 25 97-121 13-42 (52)
9 3he5_B Synzip2; heterodimeric 66.9 20 0.00069 24.6 6.2 34 38-71 6-39 (52)
10 2ysi_A Transcription elongatio 60.4 11 0.00038 24.3 3.9 28 94-121 7-38 (40)
11 2jv4_A Peptidyl-prolyl CIS/tra 60.2 6.8 0.00023 27.1 2.9 26 96-121 9-39 (54)
12 1mli_A Muconolactone isomerase 59.8 7.2 0.00024 30.4 3.3 32 220-251 14-45 (96)
13 3e2u_E CAP-Gly domain-containi 58.3 2.4 8.2E-05 28.7 0.3 14 8-21 18-31 (42)
14 2hqh_E Restin; beta/BETA struc 53.4 3.1 0.00011 25.6 0.2 14 9-22 2-15 (26)
15 2pzo_E CAP-Gly domain-containi 51.0 3.6 0.00012 27.9 0.2 13 8-20 18-30 (42)
16 1e0l_A Formin binding protein; 50.1 18 0.0006 22.9 3.4 16 107-122 19-35 (37)
17 4f9c_B Protein DBF4 homolog A; 44.7 7.5 0.00026 31.9 1.3 28 9-40 86-113 (144)
18 1ymz_A CC45; artificial protei 42.8 15 0.00051 23.7 2.3 18 96-114 10-31 (43)
19 3o9x_A Uncharacterized HTH-typ 42.5 19 0.00064 27.3 3.2 27 9-35 35-61 (133)
20 1wr3_A Ubiquitin-protein ligas 41.2 16 0.00056 22.5 2.2 18 96-114 6-27 (36)
21 1ywi_A Formin-binding protein 40.8 16 0.00054 23.7 2.2 18 96-114 11-32 (41)
22 2jxw_A WW domain-binding prote 39.5 29 0.00098 24.8 3.6 27 94-121 2-33 (75)
23 1wr4_A Ubiquitin-protein ligas 38.6 19 0.00065 22.0 2.2 18 96-114 6-27 (36)
24 2kyk_A E3 ubiquitin-protein li 38.1 18 0.00061 22.8 2.1 18 96-114 8-29 (39)
25 2ysh_A GAS-7, growth-arrest-sp 33.5 27 0.00092 22.0 2.3 18 96-114 9-30 (40)
26 1e0m_A Wwprototype; SH3 protot 32.0 34 0.0012 20.9 2.6 18 96-114 5-26 (37)
27 2ysf_A E3 ubiquitin-protein li 30.7 34 0.0012 21.8 2.5 18 96-114 9-30 (40)
28 1wr7_A NEDD4-2; all-beta, liga 30.3 28 0.00097 22.2 2.1 18 96-114 10-31 (41)
29 2gd5_A Charged multivesicular 28.9 2.1E+02 0.007 23.4 7.7 49 34-82 13-65 (179)
30 2law_A Yorkie homolog; YAP, SM 27.7 34 0.0012 21.5 2.1 18 96-114 8-29 (38)
31 2kpz_A E3 ubiquitin-protein li 27.7 32 0.0011 22.9 2.1 18 96-114 14-35 (49)
32 2e45_A Fe65 protein, amyloid b 25.8 37 0.0013 24.0 2.1 25 96-121 21-49 (55)
33 3oja_A Leucine-rich immune mol 25.5 2.1E+02 0.0073 26.1 7.9 42 42-83 435-478 (487)
34 2dmv_A Itchy homolog E3 ubiqui 25.3 42 0.0014 21.6 2.2 18 96-114 9-30 (43)
35 2l5f_A PRE-mRNA-processing fac 25.2 54 0.0019 24.3 3.1 20 94-114 11-34 (92)
36 3frt_A Charged multivesicular 21.3 3E+02 0.01 23.7 7.6 52 31-82 10-65 (218)
37 2l4j_A YES-associated protein 21.1 56 0.0019 21.5 2.2 18 96-114 13-34 (46)
38 2djy_A SMAD ubiquitination reg 21.0 54 0.0019 21.2 2.1 18 96-114 9-30 (42)
39 1i5h_W Rnedd4, ubiquitin ligas 20.9 49 0.0017 22.2 1.9 18 96-114 13-34 (50)
40 1o6w_A PRP40, PRE-mRNA process 20.3 52 0.0018 23.1 2.1 8 107-114 15-22 (75)
No 1
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=99.56 E-value=3.1e-15 Score=113.89 Aligned_cols=43 Identities=30% Similarity=0.663 Sum_probs=39.5
Q ss_pred cCccccccccccccCChhh-hhhhhchhhHHHHHHHHHHHHHHH
Q 025398 8 QGNKWCDFCKIYISNNPSS-IRNHDLGQRHKENVQKKLADMRKE 50 (253)
Q Consensus 8 ~~K~yCdyCkvwi~dn~~S-ir~HE~G~kHk~NV~k~Lrei~k~ 50 (253)
+||||||||+|||++|.++ +++|++|++|+.||+.+|+++.++
T Consensus 1 mPkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy~~~~~~ 44 (77)
T 3cw1_L 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWMEE 44 (77)
T ss_pred CCCcccccCCceecCCCHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 4899999999999877766 689999999999999999999975
No 2
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=96.86 E-value=0.00052 Score=55.01 Aligned_cols=37 Identities=24% Similarity=0.547 Sum_probs=31.4
Q ss_pred hhcCccccccccccccCChhhhhhhhchhhHHHHHHHH
Q 025398 6 VSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKK 43 (253)
Q Consensus 6 kS~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~ 43 (253)
...+.+||+.|++|+. ......+|-.|++|+.+|++.
T Consensus 89 ~~~~~~~C~~C~~~f~-s~~~~~~H~~gk~H~~~~~~~ 125 (127)
T 1zu1_A 89 GEDRSKCCPVCNMTFS-SPVVAESHYIGKTHIKNLRLR 125 (127)
T ss_dssp CCCTTTEETTTTEECS-SHHHHHHHHTSHHHHHHHHHH
T ss_pred CCCCCeEcCCCCCEeC-CHHHHHHHHCCHHHHHHHHHh
Confidence 3456899999999998 557789999999999998764
No 3
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=96.29 E-value=0.0018 Score=51.80 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=29.4
Q ss_pred ccccccccccccCChhhhhhhhchhhHHHHHHHHHH
Q 025398 10 NKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLA 45 (253)
Q Consensus 10 K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lr 45 (253)
.++|.+|++.+. +...+..|..|++|+.||+.++.
T Consensus 32 ~~~C~~C~v~~~-S~s~~~~H~~gkkH~~~v~~~~~ 66 (127)
T 1zu1_A 32 DTQCKVCSAVLI-SESQKLAHYQSRKHANKVRRYMA 66 (127)
T ss_dssp SSEETTTTEECC-SHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCcCcCCCCEeC-CHHHHHHHHCcHHHHHHHHHHhc
Confidence 479999999887 44677899999999999976654
No 4
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=94.76 E-value=0.012 Score=47.97 Aligned_cols=35 Identities=20% Similarity=0.461 Sum_probs=29.8
Q ss_pred cCccccccccccccCChhhhhhhhchhhHHHHHHHH
Q 025398 8 QGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKK 43 (253)
Q Consensus 8 ~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~ 43 (253)
...|||..|..++... ..+..|.+++.|+.+|.+.
T Consensus 48 ekpfyC~~C~K~F~~~-~~L~~H~rsK~HKrrvk~l 82 (124)
T 1zr9_A 48 GGLHRCLACARYFIDS-TNLKTHFRSKDHKKRLKQL 82 (124)
T ss_dssp GGCSEETTTTEECSSH-HHHHHHTTCHHHHHHHHHH
T ss_pred CcceEcccCcchhCCH-HHHHHHHhhhhhhHHHHHh
Confidence 4579999999999955 7889999999998887653
No 5
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=92.73 E-value=0.05 Score=33.26 Aligned_cols=17 Identities=29% Similarity=0.716 Sum_probs=13.4
Q ss_pred CceeeCCcc--eeEeCCCc
Q 025398 98 KWDYDGTSG--YYYNESNG 114 (253)
Q Consensus 98 ~~vyD~sSG--YYYd~~TG 114 (253)
+|.+|.++| ||||..|+
T Consensus 2 gWe~~~~~g~~YYyN~~T~ 20 (27)
T 1e0n_A 2 GWEIIHENGRPLYYNAEQK 20 (27)
T ss_dssp CEEEEESSSSEEEEETTTT
T ss_pred CCeEECCCCCeEEEECCCC
Confidence 577888888 77777776
No 6
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=85.21 E-value=0.4 Score=34.23 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=31.4
Q ss_pred CccccccccccccCChhhhhhhhchhhHHHHHHHHHH
Q 025398 9 GNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLA 45 (253)
Q Consensus 9 ~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lr 45 (253)
|+--|.+|.|-... ..|++.|-=++.|+++|+..|.
T Consensus 12 P~~eC~lC~vkYs~-r~slqDHIFs~qHI~~vk~~v~ 47 (55)
T 2yrk_A 12 TKPECTLCGVKYSA-RLSIRDHIFSKQHISKVRETVG 47 (55)
T ss_dssp CCSCCTTTTCCCCS-SSCHHHHHTSHHHHHHHHHTTC
T ss_pred CCccccccCccccc-ccchhhhhccHHHHHHHHHHHH
Confidence 56689999998874 4999999999999999998775
No 7
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=84.52 E-value=0.81 Score=43.59 Aligned_cols=33 Identities=33% Similarity=0.685 Sum_probs=27.5
Q ss_pred cCccccccccccccCChhhh-hhhhchhhHHHHHHH
Q 025398 8 QGNKWCDFCKIYISNNPSSI-RNHDLGQRHKENVQK 42 (253)
Q Consensus 8 ~~K~yCdyCkvwi~dn~~Si-r~HE~G~kHk~NV~k 42 (253)
....||..|.-|+.. .++ ..|-.|++|+.++++
T Consensus 290 ~~~l~C~~c~K~Fs~--~~v~~~hL~GKkh~K~~~~ 323 (402)
T 4dgw_A 290 AKGIYCPFCSRWFKT--SSVFESHLVGKIHKKNESK 323 (402)
T ss_dssp TTEECBTTTTBCBSS--HHHHHTTSSSHHHHHHHHH
T ss_pred CcCeeehhhhhhhcc--ccccHHHhcccccchhHHH
Confidence 456899999999994 355 899999999998765
No 8
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=69.66 E-value=2.3 Score=29.30 Aligned_cols=25 Identities=16% Similarity=0.581 Sum_probs=14.9
Q ss_pred CCce--eeCCcc--eeEeCCCc-eEecCCC
Q 025398 97 EKWD--YDGTSG--YYYNESNG-LYYDPKS 121 (253)
Q Consensus 97 s~~v--yD~sSG--YYYd~~TG-~YYDp~t 121 (253)
.+|. +|.++| ||||..|+ --++..+
T Consensus 13 ~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~ 42 (52)
T 2jx8_A 13 AGWEKCWSRRENRPYYFNRFTNQSLWEMPV 42 (52)
T ss_dssp HTCCEEEETTTTEEEEEETTTTEEESSCCC
T ss_pred cCcEEEEccccCCEEEEECCCCCEEeCCCC
Confidence 3575 787777 66666666 2444433
No 9
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=66.86 E-value=20 Score=24.62 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025398 38 ENVQKKLADMRKENAAKEKEHKETARALEQIEAK 71 (253)
Q Consensus 38 ~NV~k~Lrei~k~~~~keKe~~~~~~eL~rIEaa 71 (253)
.-++++|..+.+++.+-+++++.+++.|+.+...
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrde 39 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDE 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHH
Confidence 4578899999999999999999998877776654
No 10
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=60.44 E-value=11 Score=24.35 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=16.4
Q ss_pred CCCCCce-eeCCcc--eeEeCCCc-eEecCCC
Q 025398 94 NDHEKWD-YDGTSG--YYYNESNG-LYYDPKS 121 (253)
Q Consensus 94 ~~~s~~v-yD~sSG--YYYd~~TG-~YYDp~t 121 (253)
+..+.|+ +....| ||||..|+ .-++...
T Consensus 7 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 7 GTEEIWVENKTPDGKVYYYNARTRESAWTKPD 38 (40)
T ss_dssp CCCCSEEEEECTTSCEEEEETTTCCEESSCCS
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEEeCCCC
Confidence 4566775 444455 77777777 3454443
No 11
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=60.19 E-value=6.8 Score=27.10 Aligned_cols=26 Identities=19% Similarity=0.654 Sum_probs=16.8
Q ss_pred CCCce--eeCCcc--eeEeCCCc-eEecCCC
Q 025398 96 HEKWD--YDGTSG--YYYNESNG-LYYDPKS 121 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG-~YYDp~t 121 (253)
..+|. +|.++| ||||..|+ --|++.+
T Consensus 9 P~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~ 39 (54)
T 2jv4_A 9 PAGWEVRHSNSKNLPYYFNPATRESRWEPPA 39 (54)
T ss_dssp CSSCCEEECSSSSCEEEEETTTTEEESSCCT
T ss_pred CCCcEEEEECCCCCEEEEECCCCcEEecCCC
Confidence 45674 677677 77777777 3455544
No 12
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=59.78 E-value=7.2 Score=30.42 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 025398 220 PVSKEEAAAIKAREAAKKRVEEREKQLLGLYH 251 (253)
Q Consensus 220 ~~s~ee~~al~areaarkrv~~r~~~~~gly~ 251 (253)
.++.++...++|||+|+-+=-+|+--+.+||+
T Consensus 14 ~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWR 45 (96)
T 1mli_A 14 DMDPAKATQLKADEKELAQRLQREGTWRHLWR 45 (96)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEE
Confidence 58999999999999999999999988888875
No 13
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=58.27 E-value=2.4 Score=28.73 Aligned_cols=14 Identities=14% Similarity=0.845 Sum_probs=10.4
Q ss_pred cCcccccccccccc
Q 025398 8 QGNKWCDFCKIYIS 21 (253)
Q Consensus 8 ~~K~yCdyCkvwi~ 21 (253)
..|.||+.|.||=-
T Consensus 18 ~eRpYCe~CEVFGH 31 (42)
T 3e2u_E 18 EERPYCEICEMFGH 31 (42)
T ss_dssp --CCEETTTTEESS
T ss_pred ccCcccccceeccc
Confidence 34899999999843
No 14
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=53.43 E-value=3.1 Score=25.56 Aligned_cols=14 Identities=14% Similarity=0.748 Sum_probs=10.0
Q ss_pred CccccccccccccC
Q 025398 9 GNKWCDFCKIYISN 22 (253)
Q Consensus 9 ~K~yCdyCkvwi~d 22 (253)
.|-||+.|.+|--+
T Consensus 2 ~RpYCe~CE~FGH~ 15 (26)
T 2hqh_E 2 SRPYCEICEMFGHW 15 (26)
T ss_dssp --CEETTTTEESSC
T ss_pred CCccchHHHHhCcc
Confidence 47899999998543
No 15
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=51.01 E-value=3.6 Score=27.88 Aligned_cols=13 Identities=15% Similarity=0.915 Sum_probs=9.0
Q ss_pred cCccccccccccc
Q 025398 8 QGNKWCDFCKIYI 20 (253)
Q Consensus 8 ~~K~yCdyCkvwi 20 (253)
..|-||+.|.+|=
T Consensus 18 ~eRpYCd~CEvFG 30 (42)
T 2pzo_E 18 EERPYCEICEMFG 30 (42)
T ss_dssp ---CEETTTTEES
T ss_pred cCCcccccccccC
Confidence 4689999999983
No 16
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=50.07 E-value=18 Score=22.86 Aligned_cols=16 Identities=25% Similarity=0.521 Sum_probs=10.2
Q ss_pred eeEeCCCc-eEecCCCC
Q 025398 107 YYYNESNG-LYYDPKSG 122 (253)
Q Consensus 107 YYYd~~TG-~YYDp~tg 122 (253)
||||..|+ .-++...+
T Consensus 19 YYyN~~T~es~We~P~~ 35 (37)
T 1e0l_A 19 YYYNNRTLESTWEKPQE 35 (37)
T ss_dssp EEEETTTTEEESSCCSS
T ss_pred EEEECCCCCEEecCCCc
Confidence 78888777 35555443
No 17
>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*
Probab=44.70 E-value=7.5 Score=31.87 Aligned_cols=28 Identities=18% Similarity=0.514 Sum_probs=21.7
Q ss_pred CccccccccccccCChhhhhhhhchhhHHHHH
Q 025398 9 GNKWCDFCKIYISNNPSSIRNHDLGQRHKENV 40 (253)
Q Consensus 9 ~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV 40 (253)
..-||++|.+-+.| +..|-.+.+|..-+
T Consensus 86 k~GyCE~C~~~y~~----l~~H~~s~~Hr~fa 113 (144)
T 4f9c_B 86 KKGYCECCLQKYED----LETHLLSEQHRNFA 113 (144)
T ss_dssp --CEETTTTEECSC----HHHHHHSHHHHHHH
T ss_pred CCCCccchhhhhhh----HHHHcCCHHHHHHH
Confidence 35799999999884 66999999996543
No 18
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=42.76 E-value=15 Score=23.66 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=11.6
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +|. +| ||||..|+
T Consensus 10 P~gW~~~~~~-~Gr~YY~n~~T~ 31 (43)
T 1ymz_A 10 PPGWERRTDV-EGKVYYFNVRTL 31 (43)
T ss_dssp CSSEEEEECT-TSCEEEEETTTT
T ss_pred CCCCEEEECC-CCCEEEEECCCC
Confidence 34674 664 56 77777766
No 19
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=42.53 E-value=19 Score=27.33 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=19.0
Q ss_pred CccccccccccccCChhhhhhhhchhh
Q 025398 9 GNKWCDFCKIYISNNPSSIRNHDLGQR 35 (253)
Q Consensus 9 ~K~yCdyCkvwi~dn~~Sir~HE~G~k 35 (253)
+-++|+-|.-.+.+.....++++.-..
T Consensus 35 ~~~~C~~CGE~~~d~e~~~~~~~~~~e 61 (133)
T 3o9x_A 35 HGLYCVHCEESIMNKEESDAFMAQVKA 61 (133)
T ss_dssp EEEEESSSSCEECCHHHHHHHHHHHHH
T ss_pred ceeECCCCCCEeecHHHHHHHHHHHHH
Confidence 668999999988887665555544333
No 20
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=41.24 E-value=16 Score=22.50 Aligned_cols=18 Identities=39% Similarity=0.835 Sum_probs=11.4
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +|. +| ||||..|+
T Consensus 6 P~GWe~~~d~-~G~~Yy~n~~t~ 27 (36)
T 1wr3_A 6 PPGWEEKVDN-LGRTYYVNHNNR 27 (36)
T ss_dssp CTTEEEEECS-SSCEEEEETTTC
T ss_pred CCCCEEEECC-CCCEEEEECCCC
Confidence 35675 663 55 77777666
No 21
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=40.81 E-value=16 Score=23.70 Aligned_cols=18 Identities=33% Similarity=0.818 Sum_probs=10.9
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|+ .++ .| ||||..|+
T Consensus 11 ~~~W~e~~~~-~G~~YYyN~~T~ 32 (41)
T 1ywi_A 11 KSMWTEHKSP-DGRTYYYNTETK 32 (41)
T ss_dssp -CCEEEEEET-TTEEEEEETTTT
T ss_pred CCCcEEEECC-CCCEEEEECCCC
Confidence 55786 444 45 77777776
No 22
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=39.45 E-value=29 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.619 Sum_probs=15.6
Q ss_pred CCCCCce--eeCCcc--eeEeCCCc-eEecCCC
Q 025398 94 NDHEKWD--YDGTSG--YYYNESNG-LYYDPKS 121 (253)
Q Consensus 94 ~~~s~~v--yD~sSG--YYYd~~TG-~YYDp~t 121 (253)
+..++|. .|+. | ||||..|+ .-++...
T Consensus 2 ~~~~~W~e~~~~~-G~~YYyN~~T~~s~We~P~ 33 (75)
T 2jxw_A 2 PSKGRWVEGITSE-GYHYYYDLISGASQWEKPE 33 (75)
T ss_dssp CCCCCEEEEEETT-TEEEEEETTTTEEECSCCS
T ss_pred CCCCCcEEEECCC-CCEEEEECCCCCEeecCCC
Confidence 3456674 4543 5 78887777 3555443
No 23
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=38.57 E-value=19 Score=21.95 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=11.2
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +|+ +| ||||..|+
T Consensus 6 P~gWe~~~d~-~g~~Yy~n~~t~ 27 (36)
T 1wr4_A 6 PSGWEERKDA-KGRTYYVNHNNR 27 (36)
T ss_dssp CTTEEEEECS-SSCEEEEETTTT
T ss_pred CCCCEEEECC-CCCEEEEECCCC
Confidence 34675 664 55 67776666
No 24
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=38.13 E-value=18 Score=22.83 Aligned_cols=18 Identities=28% Similarity=0.689 Sum_probs=12.0
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +|+ +| ||||..|+
T Consensus 8 P~gWe~~~d~-~G~~YY~n~~t~ 29 (39)
T 2kyk_A 8 PPGWERRVDN-MGRIYYVDHFTR 29 (39)
T ss_dssp CSSCEEEECT-TSCEEEECSSSC
T ss_pred CCCcEEEEcC-CCCEEEEECCCC
Confidence 45675 774 56 77777776
No 25
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=33.45 E-value=27 Score=21.98 Aligned_cols=18 Identities=28% Similarity=0.717 Sum_probs=11.3
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +|+ +| ||||..|+
T Consensus 9 P~gW~~~~d~-~Gr~YY~n~~T~ 30 (40)
T 2ysh_A 9 PPGWQSYLSP-QGRRYYVNTTTN 30 (40)
T ss_dssp CTTCEEEECT-TSCEEEECSSSC
T ss_pred CCCceEEECC-CCCEEEEECCCC
Confidence 45674 775 56 77776665
No 26
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=32.04 E-value=34 Score=20.95 Aligned_cols=18 Identities=39% Similarity=0.890 Sum_probs=10.7
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +|+ +| ||||..|+
T Consensus 5 P~gW~~~~~~-~G~~Yy~n~~t~ 26 (37)
T 1e0m_A 5 PPGWDEYKTH-NGKTYYYNHNTK 26 (37)
T ss_dssp CTTEEEEECS-SCCEEEEETTTT
T ss_pred CCCcEEEECC-CCCEEEEECCCC
Confidence 35674 453 45 77777666
No 27
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=30.73 E-value=34 Score=21.79 Aligned_cols=18 Identities=22% Similarity=0.835 Sum_probs=12.0
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +| .+| ||+|..|+
T Consensus 9 P~gWe~~~~-~~G~~Yy~nh~t~ 30 (40)
T 2ysf_A 9 PEGWEMRFT-VDGIPYFVDHNRR 30 (40)
T ss_dssp CSSEEEEEC-TTCCEEEEETTTC
T ss_pred CcCcEEEEc-CCCCEEEEECCCC
Confidence 45784 67 455 77777776
No 28
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=30.30 E-value=28 Score=22.21 Aligned_cols=18 Identities=11% Similarity=0.584 Sum_probs=11.6
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +|+ +| ||||..|+
T Consensus 10 P~gWe~~~~~-~G~~Yy~n~~t~ 31 (41)
T 1wr7_A 10 PPGWEMRIAP-NGRPFFIDHNTK 31 (41)
T ss_dssp CTTEEEEECT-TSCEEEEETTTT
T ss_pred CCCcEEEEcC-CCCEEEEECCCC
Confidence 45775 674 45 77777666
No 29
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=28.94 E-value=2.1e+02 Score=23.40 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhh
Q 025398 34 QRHKENVQKKLADMRKENAAKEKEHKETARALEQIEA----KAKRSYQKDLAN 82 (253)
Q Consensus 34 ~kHk~NV~k~Lrei~k~~~~keKe~~~~~~eL~rIEa----aA~~AY~kDl~~ 82 (253)
+.++.++++.+++|-+...+-++++.+++.+|.+.-. .+.+-|+++|-+
T Consensus 13 r~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr 65 (179)
T 2gd5_A 13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIR 65 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677888888888888777777777777666655433 245567777765
No 30
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=27.74 E-value=34 Score=21.51 Aligned_cols=18 Identities=33% Similarity=0.855 Sum_probs=11.5
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +| .+| ||||..|+
T Consensus 8 P~gWe~~~~-~~G~~Yy~nh~t~ 29 (38)
T 2law_A 8 PDGWEQAMT-QDGEIYYINHKNK 29 (38)
T ss_dssp SSSCCEEEE-TTTEEEEEETTTT
T ss_pred CCCcEEEEC-CCCCEEEEECCCC
Confidence 35674 66 345 77777776
No 31
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=27.70 E-value=32 Score=22.87 Aligned_cols=18 Identities=11% Similarity=0.588 Sum_probs=11.6
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +|+ +| ||||..|+
T Consensus 14 P~gWe~~~~~-~G~~Yy~nh~T~ 35 (49)
T 2kpz_A 14 PKGWEVRHAP-NGRPFFIDHNTK 35 (49)
T ss_dssp CTTEEEEECT-TSCEEEEETTTT
T ss_pred CCCcEEEECC-CCCEEEEECCCC
Confidence 45785 673 45 77777766
No 32
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=25.83 E-value=37 Score=24.02 Aligned_cols=25 Identities=32% Similarity=0.755 Sum_probs=16.6
Q ss_pred CCCce--eeCCcc-eeEeCCCc-eEecCCC
Q 025398 96 HEKWD--YDGTSG-YYYNESNG-LYYDPKS 121 (253)
Q Consensus 96 ~s~~v--yD~sSG-YYYd~~TG-~YYDp~t 121 (253)
..||. .|. +| ||||..|| .=|++.+
T Consensus 21 PpGW~~~~D~-sGtYY~h~~T~tTQWerP~ 49 (55)
T 2e45_A 21 PAGWMRVQDT-SGTYYWHIPTGTTQWEPPG 49 (55)
T ss_dssp CTTEEEEEET-TEEEEEETTTCCEESSCCC
T ss_pred CCCCeEeecC-CCCEEEEcCCCCCccCCCC
Confidence 45784 788 55 88888887 3555544
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.54 E-value=2.1e+02 Score=26.12 Aligned_cols=42 Identities=5% Similarity=0.088 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhh
Q 025398 42 KKLADMRKENAAKEKEHKETARALEQIEAKAKRSYQ--KDLANQ 83 (253)
Q Consensus 42 k~Lrei~k~~~~keKe~~~~~~eL~rIEaaA~~AY~--kDl~~~ 83 (253)
+....++.+..+-+++.++++.+|..+..+...+++ +|+..+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 333444444444555667778888888887777775 466553
No 34
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.35 E-value=42 Score=21.61 Aligned_cols=18 Identities=28% Similarity=0.724 Sum_probs=11.8
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +|+ +| ||||..|+
T Consensus 9 P~GWe~~~d~-~Gr~YY~n~~t~ 30 (43)
T 2dmv_A 9 PPGWEQRVDQ-HGRVYYVDHVEK 30 (43)
T ss_dssp CTTEEEEECT-TSCEEEEETTTC
T ss_pred CCCceEEECC-CCCEEEEECCCC
Confidence 45675 775 56 77777666
No 35
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=25.21 E-value=54 Score=24.31 Aligned_cols=20 Identities=30% Similarity=0.738 Sum_probs=14.5
Q ss_pred CCCCCce--eeCCcc--eeEeCCCc
Q 025398 94 NDHEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 94 ~~~s~~v--yD~sSG--YYYd~~TG 114 (253)
+...+|. .|+ +| ||||..|+
T Consensus 11 ~lp~~W~e~~~~-~Gr~YYyN~~T~ 34 (92)
T 2l5f_A 11 GAKSMWTEHKSP-DGRTYYYNTETK 34 (92)
T ss_dssp BTTTTEEEEECT-TSCEEEEETTTT
T ss_pred CCCCCcEEEEcC-CCCEEEEECCCC
Confidence 4456785 565 66 99999887
No 36
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=21.34 E-value=3e+02 Score=23.73 Aligned_cols=52 Identities=10% Similarity=0.203 Sum_probs=36.7
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhh
Q 025398 31 DLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQIEA----KAKRSYQKDLAN 82 (253)
Q Consensus 31 E~G~kHk~NV~k~Lrei~k~~~~keKe~~~~~~eL~rIEa----aA~~AY~kDl~~ 82 (253)
|.=+.++.++++-.|+|-+...+=++++.+++.+|.+.-. .+.+-|.+||-+
T Consensus 10 e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR 65 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIR 65 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456778888888888777777777777776666655433 356788899866
No 37
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=21.14 E-value=56 Score=21.51 Aligned_cols=18 Identities=39% Similarity=0.859 Sum_probs=12.5
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +| .+| ||||..|+
T Consensus 13 P~gWe~~~~-~~G~~Yyinh~t~ 34 (46)
T 2l4j_A 13 PEGWEQAIT-PEGEIYYINHKNK 34 (46)
T ss_dssp CTTCEEEEC-TTSCEEEEETTTT
T ss_pred CcCceeEEC-CCCCEEEEECCCC
Confidence 45785 77 456 88888777
No 38
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=21.03 E-value=54 Score=21.18 Aligned_cols=18 Identities=22% Similarity=0.733 Sum_probs=11.7
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +| .+| ||||..|+
T Consensus 9 P~GWe~~~~-~~G~~Yy~nh~t~ 30 (42)
T 2djy_A 9 PPGWEIRNT-ATGRVYFVDHNNR 30 (42)
T ss_dssp CSSEEEEEC-SSSCEEEEETTTT
T ss_pred CcCcEEEEC-CCCCEEEEECCCC
Confidence 45774 66 455 77777776
No 39
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=20.93 E-value=49 Score=22.18 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=11.6
Q ss_pred CCCce--eeCCcc--eeEeCCCc
Q 025398 96 HEKWD--YDGTSG--YYYNESNG 114 (253)
Q Consensus 96 ~s~~v--yD~sSG--YYYd~~TG 114 (253)
..+|. +| .+| ||||..|+
T Consensus 13 P~gWe~~~~-~~Gr~Yy~nh~t~ 34 (50)
T 1i5h_W 13 PPGWEERTH-TDGRVFFINHNIK 34 (50)
T ss_dssp STTEEEEEC-TTSCEEEEETTTT
T ss_pred CcCcEEEEc-CCCCEEEEECCCC
Confidence 35785 67 456 77777766
No 40
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=20.28 E-value=52 Score=23.09 Aligned_cols=8 Identities=50% Similarity=1.016 Sum_probs=6.1
Q ss_pred eeEeCCCc
Q 025398 107 YYYNESNG 114 (253)
Q Consensus 107 YYYd~~TG 114 (253)
||||..|+
T Consensus 15 YY~n~~T~ 22 (75)
T 1o6w_A 15 YYYNTLTK 22 (75)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 78887776
Done!