Query 025399
Match_columns 253
No_of_seqs 200 out of 1504
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:30:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.5 1.9E-14 6.6E-19 134.3 10.2 117 2-125 209-344 (367)
2 1y0n_A Hypothetical UPF0270 pr 28.2 46 0.0016 24.1 3.1 26 2-27 37-62 (78)
3 1uf5_A N-carbamyl-D-amino acid 25.4 69 0.0024 27.3 4.4 53 4-57 27-95 (303)
4 4err_A Autotransporter adhesin 24.3 83 0.0028 23.4 3.9 27 117-143 46-72 (90)
5 3hkx_A Amidase; alpha-beta-BET 21.1 48 0.0017 28.4 2.5 49 3-52 41-98 (283)
6 3ivz_A Nitrilase; alpha-beta s 20.0 53 0.0018 27.6 2.5 53 4-57 23-87 (262)
7 2w1v_A Nitrilase-2, nitrilase 17.2 68 0.0023 27.1 2.5 48 4-52 24-79 (276)
8 2pyg_A Poly(beta-D-mannuronate 16.5 60 0.002 28.7 2.0 25 3-27 20-45 (377)
9 3p8k_A Hydrolase, carbon-nitro 15.7 53 0.0018 28.2 1.4 51 5-56 43-101 (281)
10 2e11_A Hydrolase; dimethylarse 12.9 59 0.002 27.3 0.9 45 13-58 33-84 (266)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.53 E-value=1.9e-14 Score=134.25 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhC-CCeEEEecCCeecCC----CCcccCCcCchHH----HHHHhcCCCC-eEEEEEEeCCCccCcCC--
Q 025399 2 LQGMDMAIAKLNS-GGWVHIFPEGGRSRD----GGKTVGSPKRGVG----RLILDADNVP-MVVPFVHTGMQEVMPIG-- 69 (253)
Q Consensus 2 q~al~~a~~~Lk~-G~~VvIFPEGTRsr~----g~~~l~~fK~G~~----rLA~~a~~~P-~IVPV~I~G~~~~~p~~-- 69 (253)
+++|+.+.+.|++ |.+|+|||||||+++ |++.+.+||.|.+ +||.+++ +| -||||+|. +.++++..
T Consensus 209 ~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg-~P~hIvPvaI~-t~~imppp~~ 286 (367)
T 1iuq_A 209 TRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSD-VPGHLFPLALL-CHDIMPPPSQ 286 (367)
T ss_dssp HHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSS-SCEEEEEEEEE-CGGGSCCC--
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcC-CCceEEEEEEE-eccccCCccc
Confidence 4689999999999 559999999999995 5445677999999 9999999 55 38999999 56777763
Q ss_pred -------CCCCCCCCeEEEEEcCcccCCCCcchHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 025399 70 -------ATFPRIGKTVTVLIGDPIEFDDLVDEEQTKYLSRGKLYDAVASRIGHRLKKLKLQV 125 (253)
Q Consensus 70 -------~~~pr~~~~v~I~~GePI~~~~~~~~~~~~~~~~~e~~~~v~~~I~~~L~~L~~~~ 125 (253)
..+.++ .+|.|.||+||+++++..... +.++..+++++.+++.|.+...++
T Consensus 287 ve~~~g~~r~i~~-~~V~v~ig~pI~~~~l~~~~e----~~~e~~~~l~e~v~~~I~~~y~~l 344 (367)
T 1iuq_A 287 VEIEIGEKRVIAF-NGAGLSVAPEISFEEIAATHK----NPEEVREAYSKALFDSVAMQYNVL 344 (367)
T ss_dssp --------CCCCC-BCCEEEECCCCCHHHHHHTSS----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccceeec-ccEEEEECCccchhhcccccc----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233 489999999999987652211 123444566677777776655443
No 2
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=28.21 E-value=46 Score=24.10 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCeec
Q 025399 2 LQGMDMAIAKLNSGGWVHIFPEGGRS 27 (253)
Q Consensus 2 q~al~~a~~~Lk~G~~VvIFPEGTRs 27 (253)
..-+..+.+.|++|..|++|-|=+-+
T Consensus 37 ~~kv~qv~~qL~~GeavIvfse~~Es 62 (78)
T 1y0n_A 37 DVRVERARHALRRGEAVILFDPESQQ 62 (78)
T ss_dssp HHHHHHHHHHHHTTSEEEEECTTTCC
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCe
Confidence 45678899999999999999875544
No 3
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=25.44 E-value=69 Score=27.30 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCeEEEecCCeecCCC-Cc---------c------cCCcCchHHHHHHhcCCCCeEEEE
Q 025399 4 GMDMAIAKLNSGGWVHIFPEGGRSRDG-GK---------T------VGSPKRGVGRLILDADNVPMVVPF 57 (253)
Q Consensus 4 al~~a~~~Lk~G~~VvIFPEGTRsr~g-~~---------~------l~~fK~G~~rLA~~a~~~P~IVPV 57 (253)
..+.+.++.++|--|+||||-..+-.. .. . ..+...-+..+|.+.+ +.+|+.+
T Consensus 27 ~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~-~~iv~G~ 95 (303)
T 1uf5_A 27 LLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELG-IGFNLGY 95 (303)
T ss_dssp HHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHHHHHHHHT-CEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHHHHHHHhC-eEEEEee
Confidence 344444555678899999997664211 00 0 1233445778888888 6644444
No 4
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=24.27 E-value=83 Score=23.39 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHhh
Q 025399 117 RLKKLKLQVDRLALEQPSAECVADILH 143 (253)
Q Consensus 117 ~L~~L~~~~eal~~~~~~~~~~~~l~~ 143 (253)
++..|..+++.+-...|.+.+...+++
T Consensus 46 ~l~~L~~kie~Yl~~hPdS~Rv~al~q 72 (90)
T 4err_A 46 ASFELNKKINDYIAEHPTSGRNQALTQ 72 (90)
T ss_dssp HHHHHHHHHHHHHHHCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344445555656555665555554443
No 5
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=21.14 E-value=48 Score=28.43 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCeEEEecCCeecCCCCccc---------CCcCchHHHHHHhcCCCC
Q 025399 3 QGMDMAIAKLNSGGWVHIFPEGGRSRDGGKTV---------GSPKRGVGRLILDADNVP 52 (253)
Q Consensus 3 ~al~~a~~~Lk~G~~VvIFPEGTRsr~g~~~l---------~~fK~G~~rLA~~a~~~P 52 (253)
+..+.+.++.++|--|+||||-..+-.....+ .++..-+..+|.+.+ +.
T Consensus 41 ~~~~~i~~A~~~gadlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a~~~~-i~ 98 (283)
T 3hkx_A 41 LIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRG-IA 98 (283)
T ss_dssp HHHHHHHHHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHHCCCCEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHHHHhC-CE
Confidence 34455555666788999999987762210000 122334667788888 55
No 6
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=20.01 E-value=53 Score=27.59 Aligned_cols=53 Identities=15% Similarity=0.059 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCeEEEecCCeecCCCCcc------------cCCcCchHHHHHHhcCCCCeEEEE
Q 025399 4 GMDMAIAKLNSGGWVHIFPEGGRSRDGGKT------------VGSPKRGVGRLILDADNVPMVVPF 57 (253)
Q Consensus 4 al~~a~~~Lk~G~~VvIFPEGTRsr~g~~~------------l~~fK~G~~rLA~~a~~~P~IVPV 57 (253)
..+.+.++.++|--|+||||-..+-..-.. ..+...-+..+|.+.+ +.+|+.+
T Consensus 23 ~~~~i~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~-~~iv~G~ 87 (262)
T 3ivz_A 23 AEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTG-VYIVAGT 87 (262)
T ss_dssp HHHHHHHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHC-CEEEEEE
T ss_pred HHHHHHHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcC-cEEEEeE
Confidence 344444555678899999997665211000 0123334677888888 6644443
No 7
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=17.17 E-value=68 Score=27.12 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCeEEEecCCeecCCCCccc--------CCcCchHHHHHHhcCCCC
Q 025399 4 GMDMAIAKLNSGGWVHIFPEGGRSRDGGKTV--------GSPKRGVGRLILDADNVP 52 (253)
Q Consensus 4 al~~a~~~Lk~G~~VvIFPEGTRsr~g~~~l--------~~fK~G~~rLA~~a~~~P 52 (253)
..+.+.++.++|--|+||||...+......+ .+...-+..+|.+.+ +.
T Consensus 24 ~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~-~~ 79 (276)
T 2w1v_A 24 ACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESS-IY 79 (276)
T ss_dssp HHHHHHHHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHT-SE
T ss_pred HHHHHHHHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcC-eE
Confidence 3444445556788899999987642110000 122334667788888 66
No 8
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*
Probab=16.48 E-value=60 Score=28.75 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=17.7
Q ss_pred HHHHHHHHHHh-CCCeEEEecCCeec
Q 025399 3 QGMDMAIAKLN-SGGWVHIFPEGGRS 27 (253)
Q Consensus 3 ~al~~a~~~Lk-~G~~VvIFPEGTRs 27 (253)
++|++|+.... +|...++||+|+-.
T Consensus 20 ~aiq~Ai~~a~~~gg~~v~~p~G~y~ 45 (377)
T 2pyg_A 20 ASIQAAIDAAYAAGGGTVYLPAGEYR 45 (377)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEECCeEEE
Confidence 35566665554 47788999999865
No 9
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=15.69 E-value=53 Score=28.15 Aligned_cols=51 Identities=16% Similarity=0.045 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCeEEEecCCeecCCCCcc--------cCCcCchHHHHHHhcCCCCeEEE
Q 025399 5 MDMAIAKLNSGGWVHIFPEGGRSRDGGKT--------VGSPKRGVGRLILDADNVPMVVP 56 (253)
Q Consensus 5 l~~a~~~Lk~G~~VvIFPEGTRsr~g~~~--------l~~fK~G~~rLA~~a~~~P~IVP 56 (253)
.+.+.++.++|--|+||||-..+-..... ..+...-+..+|.+.+ +.+|+.
T Consensus 43 ~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~-i~iv~G 101 (281)
T 3p8k_A 43 TQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYK-VDIVAG 101 (281)
T ss_dssp HHHHHHHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHT-CEEEEE
T ss_pred HHHHHHHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCC-eEEEEe
Confidence 33444444568889999998765211000 0123344677888888 663443
No 10
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=12.89 E-value=59 Score=27.29 Aligned_cols=45 Identities=11% Similarity=-0.032 Sum_probs=25.8
Q ss_pred hCCCeEEEecCCeecCCCC-c-c-----cCCcCchHHHHHHhcCCCCeEEEEE
Q 025399 13 NSGGWVHIFPEGGRSRDGG-K-T-----VGSPKRGVGRLILDADNVPMVVPFV 58 (253)
Q Consensus 13 k~G~~VvIFPEGTRsr~g~-~-~-----l~~fK~G~~rLA~~a~~~P~IVPV~ 58 (253)
++|--|+||||...+-... . . ..++..-+..+|.+.+ +.+|+...
T Consensus 33 ~~gadlvv~PE~~~~gy~~~~~~~a~~~~~~~~~~l~~~a~~~~-~~iv~G~~ 84 (266)
T 2e11_A 33 AGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAARLG-AAITGSVQ 84 (266)
T ss_dssp TTTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHHHT-SEEEEEEE
T ss_pred cCCCCEEECCCCccccCChhHHHhhccCCCHHHHHHHHHHHHhC-CEEEEeee
Confidence 5677899999976652211 0 0 0122334677888888 66344443
Done!