Your job contains 1 sequence.
>025401
MRGRSYTPSPPPRGSGGGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDIRR
PFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE
NRKKPSDMRARERGRGRFRRRSPPPRYSRSPPPRYARSPSYGRDYSPPPRRRNYSRSVSP
HGQNYSRERSYSRSPAYDGPRGRSRSPHRGQRQSWSPSRSRTPKRNHSVSRSRSRSPRRE
YSGERNGDRPPSQ
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025401
(253 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2086804 - symbol:SCL30A "SC35-like splicing fa... 413 9.6e-44 2
TAIR|locus:2099931 - symbol:SCL30 "SC35-like splicing fac... 297 3.7e-29 2
TAIR|locus:2144945 - symbol:SCL28 "SC35-like splicing fac... 291 1.4e-27 2
ZFIN|ZDB-GENE-040426-1415 - symbol:zgc:65772 "zgc:65772" ... 218 4.1e-21 2
UNIPROTKB|Q3ZBU5 - symbol:FUSIP1 "Uncharacterized protein... 214 7.3e-20 2
UNIPROTKB|O75494 - symbol:SRSF10 "Serine/arginine-rich sp... 214 7.3e-20 2
UNIPROTKB|Q5JRI1 - symbol:SRSF10 "Serine/arginine-rich-sp... 214 7.3e-20 2
UNIPROTKB|Q5JRI3 - symbol:SRSF10 "Serine/arginine-rich-sp... 214 7.3e-20 2
MGI|MGI:1333805 - symbol:Srsf10 "serine/arginine-rich spl... 214 7.3e-20 2
RGD|1311067 - symbol:Srsf10 "serine/arginine-rich splicin... 214 7.3e-20 2
UNIPROTKB|F2Z3T5 - symbol:Fusip1 "Protein Fusip1" species... 214 7.3e-20 2
UNIPROTKB|Q7ZTJ8 - symbol:srsf10 "MGC53149 protein" speci... 213 1.5e-19 2
UNIPROTKB|F1P4F6 - symbol:Gga.8379 "Uncharacterized prote... 209 1.9e-19 2
ZFIN|ZDB-GENE-030131-2420 - symbol:srsf2b "serine/arginin... 193 3.1e-19 2
UNIPROTKB|G3MWK4 - symbol:SRSF12 "Uncharacterized protein... 206 8.1e-19 2
UNIPROTKB|Q8WXF0 - symbol:SRSF12 "Serine/arginine-rich sp... 205 1.0e-18 2
GENEDB_PFALCIPARUM|PFE0160c - symbol:PFE0160c "Ser/Arg-ri... 225 1.1e-18 1
UNIPROTKB|Q8I468 - symbol:PFE0160c "Ser/Arg-rich splicing... 225 1.1e-18 1
UNIPROTKB|F1Q237 - symbol:F1Q237 "Uncharacterized protein... 198 1.3e-18 2
ZFIN|ZDB-GENE-040426-2706 - symbol:srsf2a "serine/arginin... 191 2.1e-18 2
WB|WBGene00004701 - symbol:rsp-4 species:6239 "Caenorhabd... 198 2.7e-18 2
UNIPROTKB|Q09511 - symbol:rsp-4 "Probable splicing factor... 198 2.7e-18 2
UNIPROTKB|P30352 - symbol:SRSF2 "Serine/arginine-rich spl... 191 8.9e-18 2
UNIPROTKB|Q3MHR5 - symbol:SRSF2 "Serine/arginine-rich spl... 191 8.9e-18 2
UNIPROTKB|E2RDB2 - symbol:SRSF2 "Uncharacterized protein"... 191 8.9e-18 2
UNIPROTKB|B4DN89 - symbol:SRSF2 "Serine/arginine-rich-spl... 191 8.9e-18 2
UNIPROTKB|Q01130 - symbol:SRSF2 "Serine/arginine-rich spl... 191 8.9e-18 2
UNIPROTKB|Q06A98 - symbol:SRSF2 "Serine/arginine-rich spl... 191 8.9e-18 2
MGI|MGI:98284 - symbol:Srsf2 "serine/arginine-rich splici... 191 8.9e-18 2
RGD|1359422 - symbol:Srsf2 "serine/arginine-rich splicing... 191 8.9e-18 2
UNIPROTKB|Q6PDU1 - symbol:Srsf2 "Serine/arginine-rich spl... 191 8.9e-18 2
UNIPROTKB|F1S0E2 - symbol:SRSF12 "Uncharacterized protein... 182 2.5e-16 2
UNIPROTKB|J9NZF4 - symbol:SRSF12 "Uncharacterized protein... 182 1.1e-15 2
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 191 4.2e-15 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 191 4.2e-15 1
TAIR|locus:2173338 - symbol:SC35 "ortholog of human splic... 159 4.1e-13 2
UNIPROTKB|I3LRW8 - symbol:SRSF2 "Serine/arginine-rich-spl... 146 4.2e-13 2
UNIPROTKB|Q9BRL6 - symbol:SRSF8 "Serine/arginine-rich spl... 172 6.3e-13 1
UNIPROTKB|I3L6H1 - symbol:SRSF10 "Uncharacterized protein... 144 1.4e-12 2
UNIPROTKB|C9JAB2 - symbol:SRSF7 "Serine/arginine-rich-spl... 110 6.6e-11 3
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 120 1.6e-10 2
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 120 2.6e-10 2
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 118 3.3e-10 2
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 122 4.2e-10 2
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 116 4.2e-10 2
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 143 5.2e-10 1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi... 122 5.3e-10 2
TAIR|locus:2025092 - symbol:SR45a "serine/arginine rich-l... 122 5.8e-10 2
CGD|CAL0000019 - symbol:orf19.1646 species:5476 "Candida ... 151 1.4e-09 1
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 151 1.7e-09 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 116 1.8e-09 2
DICTYBASE|DDB_G0284663 - symbol:mrd1 "RNA-binding region ... 150 1.9e-09 1
UNIPROTKB|E1C8Y9 - symbol:SRSF3 "Uncharacterized protein"... 115 2.2e-09 2
UNIPROTKB|Q3SZR8 - symbol:SRSF3 "Serine/arginine-rich spl... 115 2.2e-09 2
UNIPROTKB|F2Z4N6 - symbol:SRSF3 "Uncharacterized protein"... 115 2.2e-09 2
UNIPROTKB|P84103 - symbol:SRSF3 "Serine/arginine-rich spl... 115 2.2e-09 2
UNIPROTKB|I3LAE9 - symbol:LOC100523801 "Uncharacterized p... 115 2.2e-09 2
MGI|MGI:98285 - symbol:Srsf3 "serine/arginine-rich splici... 115 2.2e-09 2
RGD|1309233 - symbol:Srsf3 "serine/arginine-rich splicing... 115 2.2e-09 2
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"... 109 2.3e-09 2
ZFIN|ZDB-GENE-071005-2 - symbol:srsf3b "serine/arginine-r... 112 4.5e-09 2
UNIPROTKB|F1RY92 - symbol:SRSF3 "Uncharacterized protein"... 112 4.5e-09 2
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 108 4.5e-09 2
TAIR|locus:2075860 - symbol:U11/U12-31K "U11/U12-31K" spe... 136 6.5e-09 1
UNIPROTKB|F1P1R2 - symbol:RBM19 "Uncharacterized protein"... 143 6.6e-09 1
TAIR|locus:2049766 - symbol:RS2Z33 "arginine/serine-rich ... 112 6.7e-09 2
UNIPROTKB|F1N0L5 - symbol:RBM19 "Uncharacterized protein"... 145 6.9e-09 1
UNIPROTKB|Q1RMR2 - symbol:SNRNP70 "U1 small nuclear ribon... 128 7.3e-09 2
ASPGD|ASPL0000076347 - symbol:AN4505 species:162425 "Emer... 101 7.3e-09 2
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 145 7.3e-09 1
GENEDB_PFALCIPARUM|MAL13P1.120 - symbol:MAL13P1.120 "spli... 144 8.1e-09 1
UNIPROTKB|Q8IE99 - symbol:MAL13P1.120 "Splicing factor, p... 144 8.1e-09 1
ZFIN|ZDB-GENE-030616-631 - symbol:srsf3a "serine/arginine... 110 9.2e-09 2
UNIPROTKB|F1RKD1 - symbol:RBM19 "Uncharacterized protein"... 144 9.4e-09 1
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein... 119 9.6e-09 2
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein... 119 1.0e-08 2
ZFIN|ZDB-GENE-040426-1467 - symbol:srsf1b "serine/arginin... 108 1.1e-08 2
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ... 119 1.2e-08 2
UNIPROTKB|F1NEC5 - symbol:RBM19 "Uncharacterized protein"... 143 1.2e-08 1
MGI|MGI:1926232 - symbol:Srsf7 "serine/arginine-rich spli... 113 1.2e-08 2
MGI|MGI:1921361 - symbol:Rbm19 "RNA binding motif protein... 143 1.2e-08 1
TAIR|locus:2023903 - symbol:ATE1 "ATPase E1" species:3702... 130 1.2e-08 1
UNIPROTKB|Q3T106 - symbol:SRSF7 "Serine/arginine-rich spl... 110 1.4e-08 2
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l... 119 1.4e-08 2
UNIPROTKB|J9P2I8 - symbol:SRSF7 "Uncharacterized protein"... 110 1.5e-08 2
UNIPROTKB|D4A720 - symbol:Sfrs7 "Protein Sfrs7" species:1... 110 1.5e-08 2
UNIPROTKB|Q16629 - symbol:SRSF7 "Serine/arginine-rich spl... 110 1.5e-08 2
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 129 1.6e-08 1
TAIR|locus:2083936 - symbol:RS2Z32 "arginine/serine-rich ... 107 1.7e-08 2
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si... 102 1.7e-08 2
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho... 102 1.8e-08 2
ZFIN|ZDB-GENE-031125-3 - symbol:rbm19 "RNA binding motif ... 141 1.9e-08 1
ASPGD|ASPL0000061066 - symbol:AN0421 species:162425 "Emer... 140 2.0e-08 1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei... 120 2.2e-08 2
UNIPROTKB|Q0VCY7 - symbol:SRSF1 "Serine/arginine-rich spl... 109 2.4e-08 2
UNIPROTKB|Q07955 - symbol:SRSF1 "Serine/arginine-rich spl... 109 2.4e-08 2
UNIPROTKB|Q3YLA6 - symbol:SRSF1 "Serine/arginine-rich spl... 109 2.4e-08 2
MGI|MGI:98283 - symbol:Srsf1 "serine/arginine-rich splici... 109 2.4e-08 2
RGD|1587490 - symbol:Srsf1 "serine/arginine-rich splicing... 109 2.4e-08 2
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 127 2.6e-08 1
WARNING: Descriptions of 793 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2086804 [details] [associations]
symbol:SCL30A "SC35-like splicing factor 30A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IGI;RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 EMBL:AP002038 HSSP:Q61474 HOGENOM:HOG000276233
KO:K12900 EMBL:AF370268 EMBL:AY063026 IPI:IPI00526651
RefSeq:NP_187966.1 UniGene:At.23948 ProteinModelPortal:Q9LHP2
SMR:Q9LHP2 STRING:Q9LHP2 PRIDE:Q9LHP2 EnsemblPlants:AT3G13570.1
GeneID:820559 KEGG:ath:AT3G13570 TAIR:At3g13570 InParanoid:Q9LHP2
OMA:KERSYSR PhylomeDB:Q9LHP2 ProtClustDB:CLSN2723371
ArrayExpress:Q9LHP2 Genevestigator:Q9LHP2 Uniprot:Q9LHP2
Length = 262
Score = 413 (150.4 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 75/90 (83%), Positives = 84/90 (93%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
DLPTSLLVRNLRHDCR ED+RRPFEQFG +KDIYLPRDYY+G+PRGFGFIQF++P DAAE
Sbjct: 34 DLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAE 93
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPSDM 128
AK MDG +LLGRELTVVFAEENRKKP++M
Sbjct: 94 AKHQMDGYLLLGRELTVVFAEENRKKPTEM 123
Score = 65 (27.9 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 22/81 (27%), Positives = 29/81 (35%)
Query: 183 QNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTPKXXXXXXXXXXXXXXXXXX 242
+ Y +ERSYSRSP ++ SP RS +P+
Sbjct: 182 RRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPRRSVSPRKNRSYTPEQARSQSPVPR 241
Query: 243 ----------GERNGDRPPSQ 253
G +NGDR PSQ
Sbjct: 242 QSRSPTPVPRGAQNGDRSPSQ 262
>TAIR|locus:2099931 [details] [associations]
symbol:SCL30 "SC35-like splicing factor 30" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
HSSP:P33240 HOGENOM:HOG000276233 eggNOG:NOG312850 KO:K12900
EMBL:AY099649 EMBL:AY086131 EMBL:AY128836 IPI:IPI00522161
RefSeq:NP_567021.1 UniGene:At.10035 ProteinModelPortal:Q8L3X8
SMR:Q8L3X8 IntAct:Q8L3X8 STRING:Q8L3X8 PaxDb:Q8L3X8 PRIDE:Q8L3X8
EnsemblPlants:AT3G55460.1 GeneID:824712 KEGG:ath:AT3G55460
TAIR:At3g55460 InParanoid:Q8L3X8 OMA:YYSPPRR
ProtClustDB:CLSN2717392 ArrayExpress:Q8L3X8 Genevestigator:Q8L3X8
Uniprot:Q8L3X8
Length = 262
Score = 297 (109.6 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 51/86 (59%), Positives = 70/86 (81%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
SLLVRN+ DCRPE++R PFE+FG ++D+Y+PRDYYSG+PRGF F++FV+ DA EA+R
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107
Query: 103 MDGQVLLGRELTVVFAEENRKKPSDM 128
M+ + GRE+TVV A E+RK+P +M
Sbjct: 108 MNRRSFAGREITVVVASESRKRPEEM 133
Score = 42 (19.8 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 181 HGQNYSRERSYSRSP 195
HG++ SR S SRSP
Sbjct: 152 HGRSRSRSISRSRSP 166
>TAIR|locus:2144945 [details] [associations]
symbol:SCL28 "SC35-like splicing factor 28" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 KO:K12900 EMBL:DQ446966 IPI:IPI00533357
RefSeq:NP_197382.3 UniGene:At.10034 ProteinModelPortal:Q1PDV2
SMR:Q1PDV2 STRING:Q1PDV2 PRIDE:Q1PDV2 EnsemblPlants:AT5G18810.1
GeneID:831999 KEGG:ath:AT5G18810 TAIR:At5g18810 InParanoid:Q1PDV2
OMA:GFVKYRY PhylomeDB:Q1PDV2 Genevestigator:Q1PDV2 Uniprot:Q1PDV2
Length = 236
Score = 291 (107.5 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 52/88 (59%), Positives = 70/88 (79%)
Query: 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100
P+ LL+RNL D RP D+R FE+FG +KDIYLPR+YY+GEPRGFGF+++ +DAAEA
Sbjct: 46 PSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAM 105
Query: 101 RHMDGQVLLGRELTVVFAEENRKKPSDM 128
+ M+ +V+ GRE+ +VFAEENRK P +M
Sbjct: 106 KRMNHKVIGGREIAIVFAEENRKTPQEM 133
Score = 33 (16.7 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 187 RERSYSRSP 195
R RS SRSP
Sbjct: 188 RSRSISRSP 196
>ZFIN|ZDB-GENE-040426-1415 [details] [associations]
symbol:zgc:65772 "zgc:65772" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1415 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
KO:K12900 EMBL:FP017231 EMBL:BC056275 EMBL:BC066442 IPI:IPI00934956
RefSeq:NP_956827.1 UniGene:Dr.84143 Ensembl:ENSDART00000101091
GeneID:393505 KEGG:dre:393505 InParanoid:Q7SZS0 NextBio:20814531
Uniprot:Q7SZS0
Length = 248
Score = 218 (81.8 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 39/87 (44%), Positives = 60/87 (68%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
+SL VRN+ + RPED+RR F ++G I D+Y+P D+YS PRGF +IQF + DA +A
Sbjct: 10 SSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
++D + + GR++ + FA+ +RK P M
Sbjct: 70 NLDRKWVCGRQIEIQFAQGDRKTPGQM 96
Score = 44 (20.5 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 186 SRERSY----SRSPAYD 198
SR RSY SRSP+YD
Sbjct: 118 SRSRSYDRRRSRSPSYD 134
Score = 37 (18.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 182 GQNYSRERSYSRSPAYD 198
GQ ++ERS RS Y+
Sbjct: 94 GQMKNKERSSPRSSRYE 110
Score = 35 (17.4 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 181 HGQNYSRERSYSRS 194
H ++ SR RS SRS
Sbjct: 226 HTRSASRSRSRSRS 239
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 214 (80.4 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 38/87 (43%), Positives = 60/87 (68%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL VRN+ D R ED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
++D + + GR++ + FA+ +RK P+ M
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQM 96
Score = 36 (17.7 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 183 QNYSRERSYSRSPAYD 198
++Y R RS SRS Y+
Sbjct: 122 RSYDRRRSRSRSFDYN 137
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 214 (80.4 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 38/87 (43%), Positives = 60/87 (68%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL VRN+ D R ED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
++D + + GR++ + FA+ +RK P+ M
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQM 96
Score = 36 (17.7 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 183 QNYSRERSYSRSPAYD 198
++Y R RS SRS Y+
Sbjct: 122 RSYERRRSRSRSFDYN 137
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 214 (80.4 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 38/87 (43%), Positives = 60/87 (68%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL VRN+ D R ED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
++D + + GR++ + FA+ +RK P+ M
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQM 96
Score = 36 (17.7 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 183 QNYSRERSYSRSPAYD 198
++Y R RS SRS Y+
Sbjct: 122 RSYERRRSRSRSFDYN 137
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 214 (80.4 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 38/87 (43%), Positives = 60/87 (68%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL VRN+ D R ED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
++D + + GR++ + FA+ +RK P+ M
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQM 96
Score = 36 (17.7 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 183 QNYSRERSYSRSPAYD 198
++Y R RS SRS Y+
Sbjct: 122 RSYERRRSRSRSFDYN 137
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 214 (80.4 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 38/87 (43%), Positives = 60/87 (68%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL VRN+ D R ED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
++D + + GR++ + FA+ +RK P+ M
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQM 96
Score = 36 (17.7 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 183 QNYSRERSYSRSPAYD 198
++Y R RS SRS Y+
Sbjct: 122 RSYERRRSRSRSFDYN 137
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 214 (80.4 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 38/87 (43%), Positives = 60/87 (68%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL VRN+ D R ED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
++D + + GR++ + FA+ +RK P+ M
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQM 96
Score = 36 (17.7 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 183 QNYSRERSYSRSPAYD 198
++Y R RS SRS Y+
Sbjct: 122 RSYERRRSRSRSFDYN 137
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 214 (80.4 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 38/87 (43%), Positives = 60/87 (68%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL VRN+ D R ED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
++D + + GR++ + FA+ +RK P+ M
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQM 96
Score = 36 (17.7 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 183 QNYSRERSYSRSPAYD 198
++Y R RS SRS Y+
Sbjct: 122 RSYERRRSRSRSFDYN 137
>UNIPROTKB|Q7ZTJ8 [details] [associations]
symbol:srsf10 "MGC53149 protein" species:8355 "Xenopus
laevis" [GO:0006376 "mRNA splice site selection" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006376 HOVERGEN:HBG107480 HSSP:P11940 CTD:10772 KO:K12900
EMBL:BC046695 RefSeq:NP_001079656.1 UniGene:Xl.6570
ProteinModelPortal:Q7ZTJ8 GeneID:379343 KEGG:xla:379343
Xenbase:XB-GENE-866220 Uniprot:Q7ZTJ8
Length = 258
Score = 213 (80.0 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 38/87 (43%), Positives = 59/87 (67%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
+SL VRN+ D R ED+RR F ++G I D+Y+P DYY+ PRGF ++QF + DA +A
Sbjct: 10 SSLFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
++D + + GR++ + FA+ +RK P M
Sbjct: 70 NLDKKWICGRQIEIQFAQGDRKTPHQM 96
Score = 34 (17.0 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 183 QNYSRERSYSRS 194
++Y R RS SRS
Sbjct: 122 RSYERRRSRSRS 133
Score = 34 (17.0 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 181 HGQNYSRERSYSRS 194
HG+ R RS SRS
Sbjct: 162 HGRFNRRNRSRSRS 175
>UNIPROTKB|F1P4F6 [details] [associations]
symbol:Gga.8379 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 GO:GO:0000375
GeneTree:ENSGT00700000104403 OMA:FAYVQYT EMBL:AADN02043720
IPI:IPI00584494 Ensembl:ENSGALT00000006576 Uniprot:F1P4F6
Length = 262
Score = 209 (78.6 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 38/87 (43%), Positives = 59/87 (67%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL VRN+ D R ED+RR F ++G I D+Y+P D+Y+ PRGF + Q V+ DA +A
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYSQIVDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
++D + + GR++ + FA+ +RK P+ M
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQM 96
Score = 37 (18.1 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 184 NYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSR 221
+Y R R SRS +Y+ +SP SR
Sbjct: 112 DYDRYRR-SRSRSYERRRSRSRSFDYSYRRSYSPRNSR 148
Score = 35 (17.4 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 183 QNYSRERSYSRSPAY 197
++Y R RS SRS Y
Sbjct: 122 RSYERRRSRSRSFDY 136
Score = 34 (17.0 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 183 QNYSRERSYSRSPAY 197
+++SR RS SRS ++
Sbjct: 240 RSHSRSRSKSRSRSW 254
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 193 (73.0 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + PE +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFAEENRKKPS 126
MDG +L GREL V A R S
Sbjct: 74 AMDGAILDGRELRVQMARYGRPPDS 98
Score = 51 (23.0 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 183 QNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
++YSR RS S +P S SRSRTP
Sbjct: 155 RSYSRSRSKSHTPNKRKSKSPSRSRSRSRSKSRSRSRSRTP 195
Score = 42 (19.8 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 186 SRERS-YSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS YSRS + SPSRSR+
Sbjct: 143 SRSRSRYSRSRSRSYSRSRSKSHTPNKRKSKSPSRSRS 180
Score = 37 (18.1 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 186 SRERSYSRSPA 196
SR RS SR+PA
Sbjct: 186 SRSRSRSRTPA 196
>UNIPROTKB|G3MWK4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:DAAA02026452 Ensembl:ENSBTAT00000064733
Uniprot:G3MWK4
Length = 261
Score = 206 (77.6 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 37/87 (42%), Positives = 59/87 (67%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL VRN+ RPED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A
Sbjct: 10 TSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALY 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
+++ + + GR++ + FA+ +RK P M
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQM 96
Score = 34 (17.0 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 181 HGQNYSRERSY 191
H +++SR RSY
Sbjct: 245 HFRSHSRSRSY 255
Score = 33 (16.7 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
+S RS+SRS +Y
Sbjct: 243 HSHFRSHSRSRSY 255
>UNIPROTKB|Q8WXF0 [details] [associations]
symbol:SRSF12 "Serine/arginine-rich splicing factor 12"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=NAS] [GO:0051082 "unfolded protein binding" evidence=NAS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0050733
"RS domain binding" evidence=NAS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IDA] [GO:0016482 "cytoplasmic transport"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005654 GO:GO:0000166
EMBL:CH471051 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0016482 GO:GO:0048025 GO:GO:0000381
HOVERGEN:HBG107480 EMBL:AL353135 GO:GO:0000395 GO:GO:0050733
EMBL:AF449428 EMBL:AK314008 EMBL:BC021715 IPI:IPI00942141
RefSeq:NP_542781.3 UniGene:Hs.254414 ProteinModelPortal:Q8WXF0
SMR:Q8WXF0 IntAct:Q8WXF0 STRING:Q8WXF0 PhosphoSite:Q8WXF0
DMDM:47606193 PRIDE:Q8WXF0 DNASU:135295 Ensembl:ENST00000452027
GeneID:135295 KEGG:hsa:135295 UCSC:uc021zcq.1 CTD:135295
GeneCards:GC06M089805 HGNC:HGNC:21220 HPA:HPA049782
neXtProt:NX_Q8WXF0 PharmGKB:PA165618223 InParanoid:Q8WXF0
OMA:XSRHRRF GenomeRNAi:135295 NextBio:83483 ArrayExpress:Q8WXF0
Bgee:Q8WXF0 Genevestigator:Q8WXF0 GermOnline:ENSG00000154548
Uniprot:Q8WXF0
Length = 261
Score = 205 (77.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 36/87 (41%), Positives = 59/87 (67%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL +RN+ RPED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A
Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALY 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
+++ + + GR++ + FA+ +RK P M
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQM 96
Score = 34 (17.0 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 181 HGQNYSRERSY 191
H +++SR RSY
Sbjct: 245 HFRSHSRSRSY 255
Score = 33 (16.7 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
+S RS+SRS +Y
Sbjct: 243 HSHFRSHSRSRSY 255
>GENEDB_PFALCIPARUM|PFE0160c [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AL844504
HSSP:Q61474 RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468
IntAct:Q8I468 MINT:MINT-1654287 PRIDE:Q8I468
EnsemblProtists:PFE0160c:mRNA GeneID:812926 KEGG:pfa:PFE0160c
EuPathDB:PlasmoDB:PF3D7_0503300 HOGENOM:HOG000284061 OMA:ANTESTQ
ProtClustDB:CLSZ2848078 Uniprot:Q8I468
Length = 308
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 41/88 (46%), Positives = 58/88 (65%)
Query: 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100
P SLL+R L+ D P +R F++FGAIKD+YLP DYY+ EPRGFGF++F + DA +A
Sbjct: 11 PMSLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDAKDAEQAL 70
Query: 101 RHMDGQVLLGRELTVVFAEENRKKPSDM 128
+ M+G + G + V A++ R P M
Sbjct: 71 KEMNGSEIDGSRIEVFVAQKGRSDPRHM 98
>UNIPROTKB|Q8I468 [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HSSP:Q61474
RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468 IntAct:Q8I468
MINT:MINT-1654287 PRIDE:Q8I468 EnsemblProtists:PFE0160c:mRNA
GeneID:812926 KEGG:pfa:PFE0160c EuPathDB:PlasmoDB:PF3D7_0503300
HOGENOM:HOG000284061 OMA:ANTESTQ ProtClustDB:CLSZ2848078
Uniprot:Q8I468
Length = 308
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 41/88 (46%), Positives = 58/88 (65%)
Query: 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100
P SLL+R L+ D P +R F++FGAIKD+YLP DYY+ EPRGFGF++F + DA +A
Sbjct: 11 PMSLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDAKDAEQAL 70
Query: 101 RHMDGQVLLGRELTVVFAEENRKKPSDM 128
+ M+G + G + V A++ R P M
Sbjct: 71 KEMNGSEIDGSRIEVFVAQKGRSDPRHM 98
>UNIPROTKB|F1Q237 [details] [associations]
symbol:F1Q237 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03004837
Ensembl:ENSCAFT00000004966 OMA:DNTRSED Uniprot:F1Q237
Length = 261
Score = 198 (74.8 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL VRN+ + R ED+ R F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A
Sbjct: 10 TSLFVRNVADNTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFEDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
++D + + GR++ + FA+ ++K P+ M
Sbjct: 70 NLDRKWICGRQIEIQFAQGDQKTPNQM 96
Score = 40 (19.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 183 QNYSRERSYSRSPAYD 198
Q+Y R RS SRS Y+
Sbjct: 122 QSYERRRSRSRSFDYN 137
Score = 37 (18.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 184 NYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSR 221
+Y R R SRS +Y+ +SP SR
Sbjct: 112 DYDRYRR-SRSQSYERRRSRSRSFDYNNRRSYSPRNSR 148
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 191 (72.3 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 41/86 (47%), Positives = 54/86 (62%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + PE +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSD 127
MDG +L GREL V A R P D
Sbjct: 74 AMDGALLDGRELRVQMARYGR--PPD 97
Score = 45 (20.9 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 19/68 (27%), Positives = 22/68 (32%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT-PKXXXXXXXXXXXXXXXXXXGE 244
SR RSYSRS + SPSRSR+ K
Sbjct: 149 SRSRSYSRSRSRSRSRSKTRTPRRSKSK--SPSRSRSRSKSKSHSRSRTPRSNKGSKSRS 206
Query: 245 RNGDRPPS 252
R+ RP S
Sbjct: 207 RSRSRPKS 214
Score = 42 (19.8 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 181 HGQNYSRERSYSRSPAYDXXXXXXXXXXXXXXX-XWSPSRSRTPK 224
H ++ SR RS SRS + S S++RTP+
Sbjct: 127 HSRSRSRSRSRSRSRSRSRYSRSRSRSYSRSRSRSRSRSKTRTPR 171
Score = 33 (16.7 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 183 QNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
+ +SR RS SRS + +S SRSR+
Sbjct: 125 RKHSRSRSRSRSRS---RSRSRSRYSRSRSRSYSRSRSRS 161
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 198 (74.8 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 40/86 (46%), Positives = 57/86 (66%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL + NL + P D+RR FE++G I D+++PRD YS + +GFGF++F E DA A
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSD 127
DG+++ GREL V A+ +R PSD
Sbjct: 79 RTDGKLVDGRELRVTLAKYDR--PSD 102
Score = 37 (18.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 186 SRERSYSRSPA 196
SR RS SRSP+
Sbjct: 179 SRSRSASRSPS 189
Score = 37 (18.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 189 RSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
RS SRSP SPSRSR+
Sbjct: 160 RSRSRSPPPREDGSPKERRSRSRSASRSPSRSRS 193
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 198 (74.8 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 40/86 (46%), Positives = 57/86 (66%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL + NL + P D+RR FE++G I D+++PRD YS + +GFGF++F E DA A
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSD 127
DG+++ GREL V A+ +R PSD
Sbjct: 79 RTDGKLVDGRELRVTLAKYDR--PSD 102
Score = 37 (18.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 186 SRERSYSRSPA 196
SR RS SRSP+
Sbjct: 179 SRSRSASRSPS 189
Score = 37 (18.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 189 RSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
RS SRSP SPSRSR+
Sbjct: 160 RSRSRSPPPREDGSPKERRSRSRSASRSPSRSRS 193
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 191 (72.3 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFAEENRKKPS 126
MDG VL GREL V A R S
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDS 98
Score = 39 (18.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
SR RS S+S + S SRSR+P
Sbjct: 155 SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 185 YSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
YSR +S SR+ + S SRSR+
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 181
Score = 37 (18.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS SRS + S SRSR+
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRS 187
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 191 (72.3 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFAEENRKKPS 126
MDG VL GREL V A R S
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDS 98
Score = 39 (18.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
SR RS S+S + S SRSR+P
Sbjct: 155 SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 185 YSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
YSR +S SR+ + S SRSR+
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 181
Score = 37 (18.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS SRS + S SRSR+
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRS 187
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 191 (72.3 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFAEENRKKPS 126
MDG VL GREL V A R S
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDS 98
Score = 39 (18.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
SR RS S+S + S SRSR+P
Sbjct: 155 SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 185 YSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
YSR +S SR+ + S SRSR+
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 181
Score = 37 (18.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS SRS + S SRSR+
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRS 187
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 191 (72.3 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFAEENRKKPS 126
MDG VL GREL V A R S
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDS 98
Score = 39 (18.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
SR RS S+S + S SRSR+P
Sbjct: 143 SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 180
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 185 YSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
YSR +S SR+ + S SRSR+
Sbjct: 132 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 169
Score = 37 (18.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS SRS + S SRSR+
Sbjct: 139 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRS 175
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 191 (72.3 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFAEENRKKPS 126
MDG VL GREL V A R S
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDS 98
Score = 39 (18.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
SR RS S+S + S SRSR+P
Sbjct: 155 SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 185 YSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
YSR +S SR+ + S SRSR+
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 181
Score = 37 (18.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS SRS + S SRSR+
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRS 187
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 191 (72.3 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFAEENRKKPS 126
MDG VL GREL V A R S
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDS 98
Score = 39 (18.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
SR RS S+S + S SRSR+P
Sbjct: 155 SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 185 YSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
YSR +S SR+ + S SRSR+
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 181
Score = 37 (18.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS SRS + S SRSR+
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRS 187
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 191 (72.3 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFAEENRKKPS 126
MDG VL GREL V A R S
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDS 98
Score = 39 (18.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
SR RS S+S + S SRSR+P
Sbjct: 155 SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 185 YSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
YSR +S SR+ + S SRSR+
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 181
Score = 37 (18.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS SRS + S SRSR+
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRS 187
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 191 (72.3 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFAEENRKKPS 126
MDG VL GREL V A R S
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDS 98
Score = 39 (18.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
SR RS S+S + S SRSR+P
Sbjct: 155 SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 185 YSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
YSR +S SR+ + S SRSR+
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 181
Score = 37 (18.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS SRS + S SRSR+
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRS 187
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 191 (72.3 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFAEENRKKPS 126
MDG VL GREL V A R S
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDS 98
Score = 39 (18.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
SR RS S+S + S SRSR+P
Sbjct: 155 SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 185 YSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
YSR +S SR+ + S SRSR+
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 181
Score = 37 (18.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS SRS + S SRSR+
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRS 187
>UNIPROTKB|F1S0E2 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:CU469321 Ensembl:ENSSSCT00000004768 Uniprot:F1S0E2
Length = 240
Score = 182 (69.1 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 31/75 (41%), Positives = 52/75 (69%)
Query: 54 RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGREL 113
RPED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A +++ + + GR++
Sbjct: 1 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQI 60
Query: 114 TVVFAEENRKKPSDM 128
+ FA+ +RK P M
Sbjct: 61 EIQFAQGDRKTPGQM 75
Score = 34 (17.0 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 181 HGQNYSRERSY 191
H +++SR RSY
Sbjct: 224 HFRSHSRSRSY 234
Score = 33 (16.7 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
+S RS+SRS +Y
Sbjct: 222 HSHFRSHSRSRSY 234
>UNIPROTKB|J9NZF4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03008509
Ensembl:ENSCAFT00000047953 OMA:PRRFAYV Uniprot:J9NZF4
Length = 318
Score = 182 (69.1 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 31/75 (41%), Positives = 52/75 (69%)
Query: 54 RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGREL 113
RPED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A +++ + + GR++
Sbjct: 79 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQI 138
Query: 114 TVVFAEENRKKPSDM 128
+ FA+ +RK P M
Sbjct: 139 EIQFAQGDRKTPGQM 153
Score = 34 (17.0 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 181 HGQNYSRERSY 191
H +++SR RSY
Sbjct: 302 HFRSHSRSRSY 312
Score = 33 (16.7 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
+S RS+SRS +Y
Sbjct: 300 HSHFRSHSRSRSY 312
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFAEENRKKPS 126
MDG VL GREL V A R S
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDS 98
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFAEENRKKPS 126
MDG VL GREL V A R S
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDS 98
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 159 (61.0 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 30/77 (38%), Positives = 51/77 (66%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
SLLV N+ +D+ F ++G + D+++PRD +G+ RGF F+++ D+A +A
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 103 MDGQVLLGRELTVVFAE 119
+DG+V+ GRE+TV FA+
Sbjct: 77 LDGRVVDGREITVQFAK 93
Score = 34 (17.0 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 216 SPSRSRTPK 224
SP RSR+P+
Sbjct: 138 SPRRSRSPR 146
Score = 34 (17.0 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 216 SPSRSRTPK 224
SP RSR+P+
Sbjct: 120 SPRRSRSPR 128
>UNIPROTKB|I3LRW8 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:FP565487
Ensembl:ENSSSCT00000025710 OMA:SAPPRRY Uniprot:I3LRW8
Length = 188
Score = 146 (56.5 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 62 FEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121
FE++G + D+Y+PRD Y+ E RGF F++ + DA +A MDG VL GREL V A
Sbjct: 1 FEKYGRVGDVYIPRDRYNKESRGFAFVRXHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 60
Query: 122 RKKPS 126
R S
Sbjct: 61 RPPDS 65
Score = 39 (18.8 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
SR RS S+S + S SRSR+P
Sbjct: 122 SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 159
Score = 38 (18.4 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 185 YSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
YSR +S SR+ + S SRSR+
Sbjct: 111 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 148
Score = 37 (18.1 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS SRS + S SRSR+
Sbjct: 118 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRS 154
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 172 (65.6 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V NL + P+ +RR FE++G + D+Y+PR+ ++ PRGF F++F + DA +A+
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
Query: 103 MDGQVLLGRELTVVFAEENRK 123
MDG L GREL V A R+
Sbjct: 75 MDGAELDGRELRVQVARYGRR 95
>UNIPROTKB|I3L6H1 [details] [associations]
symbol:SRSF10 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 GO:GO:0000375
GeneTree:ENSGT00700000104403 Ensembl:ENSSSCT00000026259 OMA:PRYAYLI
Uniprot:I3L6H1
Length = 183
Score = 144 (55.7 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 30/87 (34%), Positives = 53/87 (60%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL VRN+ R ED+RR F ++G I D+Y+ +++ F + +F + DA +A
Sbjct: 10 TSLFVRNVAGCFRSEDLRREFGRYGPIVDVYVLLKFWTRWKFLFSYAKFEDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
++D + + GR++ + FA+ +RK P+ M
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQM 96
Score = 36 (17.7 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 183 QNYSRERSYSRSPAYD 198
++Y R RS SRS Y+
Sbjct: 122 RSYERRRSRSRSFDYN 137
>UNIPROTKB|C9JAB2 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich-splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC074366
HOGENOM:HOG000276234 HGNC:HGNC:10789 IPI:IPI00916448
ProteinModelPortal:C9JAB2 SMR:C9JAB2 STRING:C9JAB2 PRIDE:C9JAB2
Ensembl:ENST00000409276 ArrayExpress:C9JAB2 Bgee:C9JAB2
Uniprot:C9JAB2
Length = 235
Score = 110 (43.8 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T + V NL ++ R F +G ++ +++ R+ P GF F++F +P DA +A R
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVR 65
Query: 102 HMDGQVLLGRELTV 115
+DG+V+ G + V
Sbjct: 66 GLDGKVICGSRVRV 79
Score = 39 (18.8 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 182 GQNYSRERSYSR 193
G+ YSR RS SR
Sbjct: 140 GRRYSRSRSRSR 151
Score = 37 (18.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 16/68 (23%), Positives = 20/68 (29%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTPKXXXXXXXXXXXXXXXXXXGER 245
SR RS+SRS SP RSR+ G R
Sbjct: 130 SRSRSHSRSRGRRYSRSRSRSRGRRSRSA-SPRRSRSISLRRSRSASLRRSRSGSIKGSR 188
Query: 246 NGDRPPSQ 253
+ R S+
Sbjct: 189 SPSRSRSR 196
Score = 33 (16.7 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 216 SPSRSRTP 223
SP RSR+P
Sbjct: 214 SPKRSRSP 221
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 120 (47.3 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L + + + F FG I ++ + +D + RGFGFI F P+ A++A R M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 104 DGQVLLGRELTVVFAEENRK 123
+G+ L GR++ V A ++ +
Sbjct: 68 NGESLDGRQIRVDHAGKSAR 87
Score = 40 (19.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 181 HGQNYSRERSYSRSPA-YD 198
+G Y R R YS S YD
Sbjct: 122 YGYGYGRSRDYSGSQGGYD 140
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 120 (47.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L + + + F FG I ++ + +D + RGFGFI F P+ A++A R M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 104 DGQVLLGRELTVVFAEENRK 123
+G+ L GR++ V A ++ +
Sbjct: 68 NGESLDGRQIRVDHAGKSAR 87
Score = 38 (18.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 181 HGQNYSRERSYS-RSPA-YD 198
+G Y R R YS RS YD
Sbjct: 124 YGYGYGRSRDYSGRSQGGYD 143
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 118 (46.6 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L + + + F FG I ++ + +D + RGFGFI F P+ A+ A R M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 104 DGQVLLGRELTVVFAEENRK 123
+G+ L GR++ V A ++ +
Sbjct: 68 NGESLDGRQIRVDHAGKSAR 87
Score = 39 (18.8 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 181 HGQNYSRERSY-SRSP-AYD 198
+G Y R R Y SRS +YD
Sbjct: 124 YGYGYGRSRDYGSRSQGSYD 143
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 122 (48.0 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L + + + F FG I ++ + +D + RGFGFI F +P+ A++A R M
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 104 DGQVLLGRELTVVFAEENRK 123
+G+ L GR++ V A ++ +
Sbjct: 68 NGESLDGRQIRVDHAGKSAR 87
Score = 34 (17.0 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 181 HGQNYSRERSYS-RSPA-YD 198
+G Y R R Y RS YD
Sbjct: 130 YGYGYGRSRDYGGRSQGGYD 149
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 116 (45.9 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L + + + F FG I ++ + +D + RGFGFI F P+ A++ R M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 104 DGQVLLGRELTVVFAEENRK 123
+G+ L GR++ V A ++ +
Sbjct: 68 NGESLDGRQIRVDHAGKSAR 87
Score = 40 (19.1 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 181 HGQNYSRERSYSRSPA-YD 198
+G Y R R YS S YD
Sbjct: 124 YGYGYGRSRDYSGSQGGYD 142
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 41 PTS-LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
P+S L + L + ++ F FG + ++ + D SG RGFGF+ F E DA A
Sbjct: 39 PSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSA 98
Query: 100 KRHMDGQVLLGRELTVVFAEE 120
K MDG+ LLGR L + FA E
Sbjct: 99 KDAMDGKGLLGRPLRISFALE 119
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 122 (48.0 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T+L V L E +R F QFG + D + D SG +GFGF+++ +D+A+
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 102 HMDGQVLLGRELTVVFAEENRKK 124
MDG+ L G V+FAE R +
Sbjct: 116 GMDGKFLDG---WVIFAEYARPR 135
Score = 33 (16.7 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 183 QNYSRERSYSRSPAY 197
Q+Y + + SR P Y
Sbjct: 139 QSYQPQNNMSRPPYY 153
>TAIR|locus:2025092 [details] [associations]
symbol:SR45a "serine/arginine rich-like protein 45a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0009644 "response to high light
intensity" evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009644
GO:GO:0030529 GO:GO:0043484 eggNOG:COG0724 HSSP:Q14103
EMBL:BT005797 IPI:IPI00529615 RefSeq:NP_563787.2 UniGene:At.24511
ProteinModelPortal:Q84TH4 SMR:Q84TH4 STRING:Q84TH4
EnsemblPlants:AT1G07350.1 GeneID:837246 KEGG:ath:AT1G07350
TAIR:At1g07350 HOGENOM:HOG000239942 InParanoid:Q84TH4 OMA:SYSPYYR
ProtClustDB:CLSN2918464 ArrayExpress:Q84TH4 Genevestigator:Q84TH4
Uniprot:Q84TH4
Length = 382
Score = 122 (48.0 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 30/80 (37%), Positives = 39/80 (48%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
SL V L H D+ F + G + D++L D ++ E RGFGFI DA R
Sbjct: 76 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 135
Query: 103 MDGQVLLGRELTVVFAEENR 122
+D VL GR +TV A R
Sbjct: 136 LDHSVLQGRVITVEKARRRR 155
Score = 48 (22.0 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 183 QNYSRERSYSRSPAYDXXXXXXXXX-XXXXXXXWSPSRSRTP 223
++YS +R S SP+Y +SPSRS +P
Sbjct: 193 RSYSSDRGRSYSPSYGRRGRSSSYSPFYRRRRFYSPSRSPSP 234
Score = 34 (17.0 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 185 YSRERSYSRSPAY 197
Y+R R S SP Y
Sbjct: 238 YNRRRDRSYSPYY 250
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 151 (58.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 26/79 (32%), Positives = 52/79 (65%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L +RN+ ++ ED R F Q+GA++++++ D +G+ +GF ++QF++ +DA A R +
Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371
Query: 104 DGQVLLGRELTVVFAEENR 122
D Q+ GR L ++ A++ +
Sbjct: 372 DKQIFQGRLLHILPADKKK 390
Score = 115 (45.5 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
+ ++++NL + +D+ F FG +K + +P+ + RGF F++F +A A
Sbjct: 717 SKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKF-DQSARGFAFVEFNLMKEAETAMS 775
Query: 102 HMDGQVLLGRELTVVFAEEN 121
++G LLGR L + +AE++
Sbjct: 776 QLEGVHLLGRRLVMQYAEQD 795
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 151 (58.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 39 DLPTS--LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDA 96
DL S L +RNL + ED++R F +FG + +++ P D + +P+GF F+ F+ P+ A
Sbjct: 400 DLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHA 459
Query: 97 AEAKRHMDGQVLLGRELTVV 116
A +DGQV GR L V+
Sbjct: 460 VRAYAEVDGQVFQGRMLHVL 479
Score = 107 (42.7 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY-SGEPRGFGFIQFVEPDDAAEAK 100
+ +LVRN+ +I+ F FG +K + LP+ +G RGFGF+ F+ DA A
Sbjct: 832 SKILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 101 RHMDGQV-LLGRELTVVFAE 119
+ + L GR L + +A+
Sbjct: 892 QALCHSTHLYGRRLVLEWAD 911
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 116 (45.9 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L + + F FG I ++ + +D + RGFGFI F P+ A+ A R M
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 104 DGQVLLGRELTVVFAEENRK 123
+G+ L GR++ V A ++ +
Sbjct: 68 NGESLDGRQIRVDHAGKSAR 87
Score = 34 (17.0 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 181 HGQNYSRERSYS-RSPA-YD 198
+G Y R R Y RS YD
Sbjct: 128 YGYGYGRSRDYGGRSQGGYD 147
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 150 (57.9 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ VRNL + + ED+ + F +FG I +I++P DY S + +G FI ++ P++A +A M
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 104 DGQVLLGRELTVV 116
DG+V GR + V+
Sbjct: 423 DGKVFQGRLIHVL 435
Score = 122 (48.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/83 (28%), Positives = 49/83 (59%)
Query: 41 PTS-LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
P+S ++++NL + ++IR+ F +G I+ + +P+ G RGFGF++F+ ++A A
Sbjct: 793 PSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGH-RGFGFVEFLTEEEAKNA 851
Query: 100 KRHMDGQVLLGRELTVVFAEENR 122
+ GR L + +AE+++
Sbjct: 852 MEALGNSHFYGRHLVLQYAEQDK 874
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 115 (45.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
L + V NL ++ ++ R F +G ++ +++ R+ P GF F++F +P DAA+A
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 100 KRHMDGQVLLGRELTVVFAE-ENRKK 124
R +DG+ L G + V + E R +
Sbjct: 63 VRELDGRTLCGCRVRVELSNGEKRSR 88
Score = 34 (17.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
+++SR RS SRS
Sbjct: 149 RSFSRSRSRSRS 160
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 115 (45.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
L + V NL ++ ++ R F +G ++ +++ R+ P GF F++F +P DAA+A
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 100 KRHMDGQVLLGRELTVVFAE-ENRKK 124
R +DG+ L G + V + E R +
Sbjct: 63 VRELDGRTLCGCRVRVELSNGEKRSR 88
Score = 34 (17.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
+++SR RS SRS
Sbjct: 149 RSFSRSRSRSRS 160
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 115 (45.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
L + V NL ++ ++ R F +G ++ +++ R+ P GF F++F +P DAA+A
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 100 KRHMDGQVLLGRELTVVFAE-ENRKK 124
R +DG+ L G + V + E R +
Sbjct: 63 VRELDGRTLCGCRVRVELSNGEKRSR 88
Score = 34 (17.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
+++SR RS SRS
Sbjct: 149 RSFSRSRSRSRS 160
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 115 (45.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
L + V NL ++ ++ R F +G ++ +++ R+ P GF F++F +P DAA+A
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 100 KRHMDGQVLLGRELTVVFAE-ENRKK 124
R +DG+ L G + V + E R +
Sbjct: 63 VRELDGRTLCGCRVRVELSNGEKRSR 88
Score = 34 (17.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
+++SR RS SRS
Sbjct: 149 RSFSRSRSRSRS 160
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 115 (45.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
L + V NL ++ ++ R F +G ++ +++ R+ P GF F++F +P DAA+A
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 100 KRHMDGQVLLGRELTVVFAE-ENRKK 124
R +DG+ L G + V + E R +
Sbjct: 63 VRELDGRTLCGCRVRVELSNGEKRSR 88
Score = 34 (17.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
+++SR RS SRS
Sbjct: 149 RSFSRSRSRSRS 160
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 115 (45.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
L + V NL ++ ++ R F +G ++ +++ R+ P GF F++F +P DAA+A
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 100 KRHMDGQVLLGRELTVVFAE-ENRKK 124
R +DG+ L G + V + E R +
Sbjct: 63 VRELDGRTLCGCRVRVELSNGEKRSR 88
Score = 34 (17.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
+++SR RS SRS
Sbjct: 149 RSFSRSRSRSRS 160
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 115 (45.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
L + V NL ++ ++ R F +G ++ +++ R+ P GF F++F +P DAA+A
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 100 KRHMDGQVLLGRELTVVFAE-ENRKK 124
R +DG+ L G + V + E R +
Sbjct: 63 VRELDGRTLCGCRVRVELSNGEKRSR 88
Score = 34 (17.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
+++SR RS SRS
Sbjct: 149 RSFSRSRSRSRS 160
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 109 (43.4 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G + + + D +G RGF F+ F DD+ EA H +G L GR + V
Sbjct: 33 DLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANGMELDGRRIRVD 92
Query: 117 FAEENR 122
++ R
Sbjct: 93 YSITKR 98
Score = 40 (19.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
YSR RS SRS +Y
Sbjct: 165 YSRYRSRSRSRSY 177
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 112 (44.5 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
L + V NL ++ ++ R F +G ++ +++ R+ P GF F++F +P DA +A
Sbjct: 7 LDCKVYVGNLGNNGNKSELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDATDA 61
Query: 100 KRHMDGQVLLGRELTVVFAEENRKKPS 126
R +DG+ L G + V + ++ S
Sbjct: 62 VRELDGRTLCGCRVRVELSNGEKRTRS 88
Score = 34 (17.0 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
+++SR RS SRS
Sbjct: 149 RSFSRSRSRSRS 160
Score = 33 (16.7 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS+SR + S SRSR+
Sbjct: 124 SRSRSFSRERRRERSLSRERNHKPSRSFSRSRSRSRS 160
>UNIPROTKB|F1RY92 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 OMA:SPPPRRX EMBL:CU633682
Ensembl:ENSSSCT00000001743 Uniprot:F1RY92
Length = 164
Score = 112 (44.5 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
L + V NL ++ ++ R F +G ++ +++ R+ P GF F++F +P DAA+A
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 100 KRHMDGQVLLGRELTVVFAE-ENRKK 124
R +DG L G + V + E R +
Sbjct: 63 VRELDGGTLCGCRVRVELSNGEKRSR 88
Score = 34 (17.0 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
+++SR RS SRS
Sbjct: 149 RSFSRSRSRSRS 160
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 108 (43.1 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L + + + F FG I ++ + +D+ + +GFGFI F P+ A+ A R
Sbjct: 8 LFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRAT 67
Query: 104 DGQVLLGRELTVVFAEENRK 123
+G+ L GR++ V A ++ +
Sbjct: 68 NGESLDGRQIHVDHAGKSAR 87
Score = 38 (18.4 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 181 HGQNYSRERSYSRSP-AYD 198
+G Y R R Y S +YD
Sbjct: 124 YGYGYGRSRDYGSSQGSYD 142
Score = 38 (18.4 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 181 HGQNYSRERSYSR--SPAYD 198
HG YSR R + S YD
Sbjct: 97 HGHGYSRGRGHQSYGSSRYD 116
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 136 (52.9 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
++L V NL DI F FG + + + +D ++ + RG F+ +V +DAA+A R
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 102 HMDGQVLLGRELTVVFAEEN 121
MD ++L GR+LTV A +N
Sbjct: 117 SMDAKILNGRKLTVSIAADN 136
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 143 (55.4 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 39 DLPTS--LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDA 96
DL S L VRNL ED+ + F ++G + +I+ P D + +P+GF FI ++ P+ A
Sbjct: 73 DLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHA 132
Query: 97 AEAKRHMDGQVLLGRELTVVFAEENRKKPSDM 128
+A MDGQV GR + ++ + + K D+
Sbjct: 133 VKAYAEMDGQVFQGRMMHLLPSTIKKLKIEDI 164
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY-SGEPRGFGFIQFVEPDDAAEAK 100
+ +LVRN+ +IR F FG +K + LP+ +G RGFGF+ F+ DA +A
Sbjct: 495 SKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAF 554
Query: 101 RHMDGQV-LLGRELTVVFAE 119
+ L GR L + +A+
Sbjct: 555 NALCHSTHLYGRRLVLEWAD 574
>TAIR|locus:2049766 [details] [associations]
symbol:RS2Z33 "arginine/serine-rich zinc
knuckle-containing protein 33" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0000245 "spliceosomal
complex assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
EMBL:AC005896 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
UniGene:At.48558 UniGene:At.71153 GO:GO:0000245 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 PIR:F84791 EMBL:AJ293801
EMBL:AY072315 EMBL:AY114563 EMBL:AK176551 EMBL:BX842463
EMBL:BX842467 EMBL:AK176666 IPI:IPI00543174 RefSeq:NP_850280.1
RefSeq:NP_973619.1 RefSeq:NP_973620.1 ProteinModelPortal:Q8VYA5
SMR:Q8VYA5 IntAct:Q8VYA5 STRING:Q8VYA5 PRIDE:Q8VYA5 ProMEX:Q8VYA5
EnsemblPlants:AT2G37340.1 GeneID:818311 KEGG:ath:AT2G37340
TAIR:At2g37340 InParanoid:Q8VYA5 OMA:NNGDDPS PhylomeDB:Q8VYA5
ProtClustDB:CLSN2680093 Genevestigator:Q8VYA5 Uniprot:Q8VYA5
Length = 290
Score = 112 (44.5 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T L V L R D+ R F ++G ++D+ + RDY F++F +P DA +A+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDY--------AFVEFGDPRDADDARH 62
Query: 102 HMDGQVLLGRELTVVFA 118
++DG+ G +TV F+
Sbjct: 63 YLDGRDFDGSRITVEFS 79
Score = 44 (20.5 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 187 RERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
R SYSRSP S SRSR+P
Sbjct: 145 RSGSYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRSP 181
Score = 39 (18.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
++ SR RSYSRS
Sbjct: 167 RSLSRSRSYSRS 178
Score = 33 (16.7 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 216 SPSRSRTPK 224
SP RSR+P+
Sbjct: 152 SPVRSRSPR 160
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 145 (56.1 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 39 DLPTS--LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDA 96
DL S L VRNL + ED+ + F ++G + +++ P D + +P+GF F+ F+ P+ A
Sbjct: 358 DLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHA 417
Query: 97 AEAKRHMDGQVLLGRELTVV 116
+A +DGQV GR L V+
Sbjct: 418 VKAYAEVDGQVFQGRMLHVL 437
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 40 LP-TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY-SGE--PRGFGFIQFVEPDD 95
LP +L ++NL D E ++ F + GA+K + + +G GFGF+++ +P+
Sbjct: 687 LPGCTLFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQ 746
Query: 96 AAEAKRHMDGQVLLGRELTVVFAEENRK 123
A +A + + G V+ G +L V +E K
Sbjct: 747 AQKALKQLQGHVVDGHKLEVRISERATK 774
>UNIPROTKB|Q1RMR2 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 EMBL:BC114762 IPI:IPI00711491
RefSeq:NP_001069514.1 UniGene:Bt.12748 ProteinModelPortal:Q1RMR2
STRING:Q1RMR2 PRIDE:Q1RMR2 Ensembl:ENSBTAT00000002587 GeneID:535113
KEGG:bta:535113 CTD:6625 GeneTree:ENSGT00530000063750
InParanoid:Q1RMR2 OrthoDB:EOG4CJVJ7 NextBio:20876626
ArrayExpress:Q1RMR2 Uniprot:Q1RMR2
Length = 439
Score = 128 (50.1 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V + +D +RR FE +G IK I++ SG+PRG+ FI++ D A +H
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 103 MDGQVLLGRELTV 115
DG+ + GR + V
Sbjct: 164 ADGKKIDGRRVLV 176
Score = 33 (16.7 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 243 GERNGDR 249
GER GDR
Sbjct: 382 GERGGDR 388
>ASPGD|ASPL0000076347 [details] [associations]
symbol:AN4505 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 EMBL:BN001303
EMBL:AACD01000078 HOGENOM:HOG000183826 KO:K12876 eggNOG:NOG246776
OrthoDB:EOG4M9523 RefSeq:XP_662109.1 ProteinModelPortal:Q5B4M5
SMR:Q5B4M5 STRING:Q5B4M5 EnsemblFungi:CADANIAT00005939
GeneID:2872307 KEGG:ani:AN4505.2 OMA:IEGWIII Uniprot:Q5B4M5
Length = 158
Score = 101 (40.6 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
++ N+ + ED+ F ++G IK+ L D +G +G+ I++ +AAEA + +
Sbjct: 44 IIATNIHEEASEEDVTDLFAEYGEIKNFSLNLDRRTGYVKGYALIEYSTLPEAAEAIKEL 103
Query: 104 DGQVLLGRELTVVFAEENRKKPSD 127
+G LL + + V +A R PS+
Sbjct: 104 NGTKLLDQTIEVDYAFV-RPPPSN 126
Score = 43 (20.2 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 182 GQNYSRERSYSRSP 195
G+N SR R SRSP
Sbjct: 138 GRNRSRSRDRSRSP 151
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 145 (56.1 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 39 DLPTS--LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDA 96
DL S L VRNL + ED+ + F ++G + +++ P D + +P+GF FI F+ P+ A
Sbjct: 397 DLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHA 456
Query: 97 AEAKRHMDGQVLLGRELTVV 116
+A +DGQV GR L V+
Sbjct: 457 VKAYSEVDGQVFQGRMLHVL 476
Score = 112 (44.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY-SGEPRGFGFIQFVEPDDAAEAK 100
+ +LVRN+ +IR F FG +K + LP+ +G RGFGF+ F+ DA A
Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 101 RHMDGQV-LLGRELTVVFAE 119
+ L GR L + +A+
Sbjct: 892 NALCHSTHLYGRRLVLEWAD 911
Score = 102 (41.0 bits), Expect = 0.00028, P = 0.00028
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 40 LP-TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGE---PRGFGFIQFVEPDD 95
LP +L ++NL D E ++ F + G +K + + GFGF+++ +P+
Sbjct: 727 LPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQ 786
Query: 96 AAEAKRHMDGQVLLGRELTVVFAEENRK 123
A +A + + G V+ G +L V +E K
Sbjct: 787 AQKALKQLQGHVVDGHKLEVRISERATK 814
Score = 97 (39.2 bits), Expect = 0.00096, P = 0.00096
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L+V+NL + + E R+ F FG + D L + G+ R FGFI F ++A +A++H
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSL-KFTKDGKFRKFGFIGFKSEEEAQKAQKHF 62
Query: 104 DGQVLLGRELTVVFAE 119
+ + +TV F +
Sbjct: 63 NKSFIDTSRITVEFCK 78
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 144 (55.7 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 30/87 (34%), Positives = 53/87 (60%)
Query: 39 DLPTSLLVRNLR---HDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDD 95
D+P L + L + +++++ F FG I D+ + RD Y+G+ +GFGFIQF + +
Sbjct: 583 DIPLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASE 642
Query: 96 AAEAKRHMDGQVLLGRELTVVFAEENR 122
A EA M+G + GRE+ V +A++++
Sbjct: 643 AIEALTVMNGMEVAGREIKVGYAQDSK 669
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 144 (55.7 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 30/87 (34%), Positives = 53/87 (60%)
Query: 39 DLPTSLLVRNLR---HDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDD 95
D+P L + L + +++++ F FG I D+ + RD Y+G+ +GFGFIQF + +
Sbjct: 583 DIPLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASE 642
Query: 96 AAEAKRHMDGQVLLGRELTVVFAEENR 122
A EA M+G + GRE+ V +A++++
Sbjct: 643 AIEALTVMNGMEVAGREIKVGYAQDSK 669
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 110 (43.8 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
L + V NL + ++ R F +G ++ +++ R+ P GF F++F +P DA +A
Sbjct: 12 LDCKVYVGNLGNSGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDATDA 66
Query: 100 KRHMDGQVLLGRELTVVFAE-ENRKK 124
R +DG+ L G + V + E R +
Sbjct: 67 VRELDGRTLCGCRVRVEMSNGEKRSR 92
Score = 33 (16.7 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRS 220
S RS+SRS + + PSRS
Sbjct: 126 SPRRSFSRSRSRSLSRERRRERSLSRDRNYKPSRS 160
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 144 (55.7 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 39 DLPTS--LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDA 96
DL S L VRNL + ED+ + F ++G + +++ P D + +P+GF F+ F+ P+ A
Sbjct: 398 DLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 457
Query: 97 AEAKRHMDGQVLLGRELTVV 116
+A +DGQV GR L V+
Sbjct: 458 VKAYAEVDGQVFQGRMLHVL 477
Score = 108 (43.1 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY-SGEPRGFGFIQFVEPDDAAEAK 100
+ +LVRN+ +IR F FG +K + LP+ +G RGFGF+ F DA A
Sbjct: 837 SKILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAF 896
Query: 101 RHMDGQV-LLGRELTVVFAE 119
+ L GR L + +A+
Sbjct: 897 NALCHSTHLYGRRLVLEWAD 916
Score = 100 (40.3 bits), Expect = 0.00046, P = 0.00046
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 40 LP-TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY-SGE--PRGFGFIQFVEPDD 95
LP +L ++NL E ++ F + GA+K + + +G GFGF+++ +P+
Sbjct: 732 LPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQ 791
Query: 96 AAEAKRHMDGQVLLGRELTVVFAEENRK 123
A +A + + G V+ G +L V +E K
Sbjct: 792 AQKALKQLQGHVVDGHKLEVRISERATK 819
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 119 (46.9 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 7 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 66
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 67 AARDMNGKSLDGKAIKV----EQATKPS 90
Score = 35 (17.4 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 268 YGRDRDYSDHPS 279
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 119 (46.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
Score = 35 (17.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 266 YGRDRDYSDHPS 277
>ZFIN|ZDB-GENE-040426-1467 [details] [associations]
symbol:srsf1b "serine/arginine-rich splicing
factor 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1467 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL929224 EMBL:CU928208 IPI:IPI00506820
Ensembl:ENSDART00000110646 ArrayExpress:F1QXQ1 Bgee:F1QXQ1
Uniprot:F1QXQ1
Length = 258
Score = 108 (43.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V NL D R +D+ F ++GAI+DI L ++ G P F F++F +P DA +A
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 73
Query: 104 DGQVLLGRELTVVFAEENR 122
DG G L V F R
Sbjct: 74 DGYDYDGYRLRVEFPRSGR 92
Score = 44 (20.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 181 HGQNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSP--SRSRTP 223
+G++ SR RS SRS + + +SP SRSR+P
Sbjct: 201 YGRSRSRSRSRSRSRS-NSRSRSYSPRRSRGSPRYSPRHSRSRSP 244
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 119 (46.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
Score = 35 (17.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 265 YGRDRDYSDHPS 276
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 143 (55.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 39 DLPTS--LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDA 96
DL S L VRNL ED+ + F ++G + +I+ P D + +P+GF FI ++ P+ A
Sbjct: 397 DLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHA 456
Query: 97 AEAKRHMDGQVLLGRELTVVFAEENRKKPSDM 128
+A MDGQV GR + ++ + + K D+
Sbjct: 457 VKAYAEMDGQVFQGRMMHLLPSTIKKLKIEDI 488
Score = 112 (44.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY-SGEPRGFGFIQFVEPDDAAEAK 100
+ +LVRN+ +IR F FG +K + LP+ +G RGFGF+ F+ DA +A
Sbjct: 819 SKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAF 878
Query: 101 RHMDGQV-LLGRELTVVFAE 119
+ L GR L + +A+
Sbjct: 879 NALCHSTHLYGRRLVLEWAD 898
>MGI|MGI:1926232 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 MGI:MGI:1926232 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10 GO:GO:0048025
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452 eggNOG:NOG315521
KO:K12896 CTD:6432 OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:AK032861
EMBL:AK045884 EMBL:AK082848 EMBL:BC014857 EMBL:BC025529
EMBL:BC027391 IPI:IPI00153743 IPI:IPI00222763 IPI:IPI00474158
IPI:IPI00474169 RefSeq:NP_001182414.1 RefSeq:NP_001182415.1
RefSeq:NP_001182416.1 RefSeq:NP_666195.1 UniGene:Mm.292016
ProteinModelPortal:Q8BL97 SMR:Q8BL97 DIP:DIP-36580N IntAct:Q8BL97
STRING:Q8BL97 PhosphoSite:Q8BL97 PaxDb:Q8BL97 PRIDE:Q8BL97
Ensembl:ENSMUST00000063417 GeneID:225027 KEGG:mmu:225027
UCSC:uc008dqt.2 InParanoid:Q8BL97 ChiTaRS:SRSF7 NextBio:377508
Bgee:Q8BL97 CleanEx:MM_SFRS7 Genevestigator:Q8BL97
GermOnline:ENSMUSG00000024097 Uniprot:Q8BL97
Length = 267
Score = 113 (44.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D T + V NL ++ R F +G ++ +++ R+ P GF F++F +P DA +
Sbjct: 37 DSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAED 91
Query: 99 AKRHMDGQVLLGRELTV 115
A R +DG+V+ G + V
Sbjct: 92 AVRGLDGKVICGSRVRV 108
Score = 39 (18.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 182 GQNYSRERSYSR 193
G+ YSR RS SR
Sbjct: 169 GRRYSRSRSRSR 180
Score = 39 (18.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 182 GQNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
G Y + RS SRS + SP RSR+P
Sbjct: 215 GSRYFQSRSRSRSRSRSISRPRSSRSKSRSP---SPKRSRSP 253
Score = 34 (17.0 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS+SRS SP RSR+
Sbjct: 159 SRSRSHSRSRGRRYSRSRSRSRGRRSRSA-SPRRSRS 194
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 143 (55.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 39 DLPTS--LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDA 96
DL S L VRNL + ED+ + F +G + +++ P D + +P+GF F+ F+ P+ A
Sbjct: 395 DLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 454
Query: 97 AEAKRHMDGQVLLGRELTVV 116
+A +DGQV GR L V+
Sbjct: 455 VKAYAEVDGQVFQGRMLHVL 474
Score = 115 (45.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY-SGEPRGFGFIQFVEPDDAAEAK 100
+ +LVRN+ +IR F FG +K + LP+ +G RGFGF+ F+ DA +A
Sbjct: 824 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883
Query: 101 RHMDGQV-LLGRELTVVFAE 119
+ L GR L + +A+
Sbjct: 884 NALCHSTHLYGRRLVLEWAD 903
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V L + + F FG IKD+ P D + + R FGF+ F+E +DA+ A +
Sbjct: 14 TLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDN 73
Query: 103 MDGQVLLGRELTVVFA 118
MDG L GR LTV +A
Sbjct: 74 MDGAELYGRVLTVNYA 89
>UNIPROTKB|Q3T106 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
GO:GO:0048025 HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
eggNOG:NOG315521 KO:K12896 HSSP:Q07955 EMBL:BC102184
IPI:IPI00713479 RefSeq:NP_001029449.1 UniGene:Bt.8206
ProteinModelPortal:Q3T106 SMR:Q3T106 STRING:Q3T106 PRIDE:Q3T106
Ensembl:ENSBTAT00000033124 GeneID:507066 KEGG:bta:507066 CTD:6432
InParanoid:Q3T106 OMA:LKRSRYF OrthoDB:EOG4Z62PZ NextBio:20867886
ArrayExpress:Q3T106 Uniprot:Q3T106
Length = 235
Score = 110 (43.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T + V NL ++ R F +G ++ +++ R+ P GF F++F +P DA +A R
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVR 65
Query: 102 HMDGQVLLGRELTV 115
+DG+V+ G + V
Sbjct: 66 GLDGKVICGSRVRV 79
Score = 39 (18.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 182 GQNYSRERSYSR 193
G+ YSR RS SR
Sbjct: 140 GRRYSRSRSRSR 151
Score = 38 (18.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 16/68 (23%), Positives = 20/68 (29%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTPKXXXXXXXXXXXXXXXXXXGER 245
SR RS+SRS SP RSR+ G R
Sbjct: 130 SRSRSHSRSRGRRYSRSRSRSRGRRSRSA-SPRRSRSVSLRRSRSASLRRSRSGSIKGSR 188
Query: 246 NGDRPPSQ 253
+ R S+
Sbjct: 189 SRSRSRSR 196
Score = 36 (17.7 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
SR RS SRS + SP RSR+P
Sbjct: 187 SRSRSRSRSRSRSLSRPRSSRSKSRSP---SPKRSRSP 221
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 119 (46.9 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y RER YS P+
Sbjct: 266 YGRERDYSDHPS 277
>UNIPROTKB|J9P2I8 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
EMBL:AAEX03010868 RefSeq:XP_532939.2 ProteinModelPortal:J9P2I8
Ensembl:ENSCAFT00000043999 GeneID:475730 KEGG:cfa:475730
Uniprot:J9P2I8
Length = 238
Score = 110 (43.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T + V NL ++ R F +G ++ +++ R+ P GF F++F +P DA +A R
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVR 65
Query: 102 HMDGQVLLGRELTV 115
+DG+V+ G + V
Sbjct: 66 GLDGKVICGSRVRV 79
Score = 39 (18.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 182 GQNYSRERSYSR 193
G+ YSR RS SR
Sbjct: 140 GRRYSRSRSRSR 151
Score = 39 (18.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 182 GQNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
G Y + RS SRS + SP RSR+P
Sbjct: 186 GSRYFQSRSRSRSRSRSLSRPRSSRSKSRSP---SPKRSRSP 224
Score = 34 (17.0 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS+SRS SP RSR+
Sbjct: 130 SRSRSHSRSRGRRYSRSRSRSRGRRSRSA-SPRRSRS 165
>UNIPROTKB|D4A720 [details] [associations]
symbol:Sfrs7 "Protein Sfrs7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:CH473947
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
OrthoDB:EOG4Z62PZ IPI:IPI00392794 RefSeq:NP_001034124.2
UniGene:Rn.218757 SMR:D4A720 Ensembl:ENSRNOT00000038448
GeneID:362687 KEGG:rno:362687 NextBio:680884 Uniprot:D4A720
Length = 238
Score = 110 (43.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T + V NL ++ R F +G ++ +++ R+ P GF F++F +P DA +A R
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVR 65
Query: 102 HMDGQVLLGRELTV 115
+DG+V+ G + V
Sbjct: 66 GLDGKVICGSRVRV 79
Score = 39 (18.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 182 GQNYSRERSYSR 193
G+ YSR RS SR
Sbjct: 140 GRRYSRSRSRSR 151
Score = 39 (18.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 182 GQNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
G Y + RS SRS + SP RSR+P
Sbjct: 186 GSRYFQSRSRSRSRSRSISRPRSSRSKSRSP---SPKRSRSP 224
Score = 34 (17.0 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS+SRS SP RSR+
Sbjct: 130 SRSRSHSRSRGRRYSRSRSRSRGRRSRSA-SPRRSRS 165
>UNIPROTKB|Q16629 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:CH471053 GO:GO:0005654 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 Gene3D:4.10.60.10 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 EMBL:AC074366
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:L22253 EMBL:L41887 EMBL:AB445102
EMBL:AY166860 EMBL:BT006745 EMBL:AY513287 EMBL:AK297161
EMBL:BC000997 EMBL:BC017369 EMBL:BC017908 EMBL:BC022328
IPI:IPI00003377 IPI:IPI00744364 IPI:IPI00917346 PIR:A57198
RefSeq:NP_001026854.1 RefSeq:NP_001182375.1 UniGene:Hs.309090
PDB:2HVZ PDBsum:2HVZ ProteinModelPortal:Q16629 SMR:Q16629
DIP:DIP-31790N IntAct:Q16629 MINT:MINT-3032898 STRING:Q16629
PhosphoSite:Q16629 DMDM:3929380 SWISS-2DPAGE:P99058 PaxDb:Q16629
PRIDE:Q16629 DNASU:6432 Ensembl:ENST00000313117
Ensembl:ENST00000431066 Ensembl:ENST00000443213
Ensembl:ENST00000446327 GeneID:6432 KEGG:hsa:6432 UCSC:uc002rqz.3
GeneCards:GC02M038971 HGNC:HGNC:10789 HPA:HPA043850 MIM:600572
neXtProt:NX_Q16629 PharmGKB:PA35705 InParanoid:Q16629
PhylomeDB:Q16629 EvolutionaryTrace:Q16629 GenomeRNAi:6432
NextBio:24983 ArrayExpress:Q16629 Bgee:Q16629 CleanEx:HS_SFRS7
Genevestigator:Q16629 GermOnline:ENSG00000115875 Uniprot:Q16629
Length = 238
Score = 110 (43.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T + V NL ++ R F +G ++ +++ R+ P GF F++F +P DA +A R
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVR 65
Query: 102 HMDGQVLLGRELTV 115
+DG+V+ G + V
Sbjct: 66 GLDGKVICGSRVRV 79
Score = 39 (18.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 182 GQNYSRERSYSR 193
G+ YSR RS SR
Sbjct: 140 GRRYSRSRSRSR 151
Score = 36 (17.7 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 183 QNYSRERSYSRS---PAYDXXXXXXXXXXXXXXXXWSPSRSRTPK 224
Q+ SR RS SRS P SP RS +P+
Sbjct: 191 QSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPE 235
Score = 34 (17.0 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
SR RS+SRS SP RSR+
Sbjct: 130 SRSRSHSRSRGRRYSRSRSRSRGRRSRSA-SPRRSRS 165
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L + L D E + + F ++G I ++ + +D + RGFGF+ F PDDA +A M
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 67 NGKAVDGRQIRV 78
>TAIR|locus:2083936 [details] [associations]
symbol:RS2Z32 "arginine/serine-rich zinc
knuckle-containing protein 32" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA;TAS] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132966
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0000398 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 EMBL:AY095996 EMBL:BT001034
EMBL:AK316697 IPI:IPI00525747 PIR:F84791 PIR:T45890
RefSeq:NP_190918.3 RefSeq:NP_851015.1 UniGene:At.26777
ProteinModelPortal:Q9FYB7 SMR:Q9FYB7 STRING:Q9FYB7 PRIDE:Q9FYB7
EnsemblPlants:AT3G53500.2 GeneID:824518 KEGG:ath:AT3G53500
TAIR:At3g53500 InParanoid:Q9FYB7 OMA:GSPKENG PhylomeDB:Q9FYB7
ProtClustDB:CLSN2680397 Genevestigator:Q9FYB7 Uniprot:Q9FYB7
Length = 284
Score = 107 (42.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T L V L R D+ R F ++G ++D+ + RDY F++F +P DA +A+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDY--------AFVEFSDPRDADDARY 62
Query: 102 HMDGQVLLGRELTVVFAEENRKKP 125
++DG+ G +TV E +R P
Sbjct: 63 YLDGRDFDGSRITV---EASRGAP 83
Score = 45 (20.9 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 183 QNYSRERSYSRS 194
++YSR RSYSRS
Sbjct: 171 RSYSRGRSYSRS 182
Score = 41 (19.5 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPS---RSRTPK 224
SR RSYSR +Y SP RS +PK
Sbjct: 168 SRSRSYSRGRSYSRSRSPVRREKSVEDRSRSPKAMERSVSPK 209
Score = 38 (18.4 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 187 RERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTPK 224
R RS SRS +Y RSR+PK
Sbjct: 163 RRRSPSRSRSYSRGRSYSRSRSPVRREKSVEDRSRSPK 200
Score = 35 (17.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 182 GQNYSRERSYSRSP 195
G +YSR SRSP
Sbjct: 148 GGSYSRSPVKSRSP 161
Score = 33 (16.7 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 182 GQNYSRERS 190
G++YSR RS
Sbjct: 176 GRSYSRSRS 184
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 102 (41.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G + + + D +G RGF F+ F DD+ EA +G L GR + V
Sbjct: 33 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 92
Query: 117 FAEENR 122
++ R
Sbjct: 93 YSITKR 98
Score = 40 (19.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
YSR RS SRS +Y
Sbjct: 163 YSRYRSRSRSRSY 175
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 102 (41.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G + + + D +G RGF F+ F DD+ EA +G L GR + V
Sbjct: 33 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 92
Query: 117 FAEENR 122
++ R
Sbjct: 93 YSITKR 98
Score = 40 (19.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
YSR RS SRS +Y
Sbjct: 164 YSRYRSRSRSRSY 176
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 141 (54.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L +RN+ + C ED++ F + G + ++ P D + +P+GF F+ ++ P++A A +
Sbjct: 401 LFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 460
Query: 104 DGQVLLGRELTVVFAEENRKKPSD 127
DG GR L V+ A +K+ +D
Sbjct: 461 DGHTFQGRVLHVM-ASRLKKEKAD 483
Score = 114 (45.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
+ +LVRN+ +++R F FG +K + LP+ G RGFGFI F+ DA +A
Sbjct: 805 SKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFS 864
Query: 102 HMDGQV-LLGRELTVVFAE 119
+ L GR L + +A+
Sbjct: 865 ALCHSTHLYGRRLVLEWAD 883
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 140 (54.3 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L VRNL ++ + ++ F FG I++I++ D +GF ++Q+ +PD A EA R++
Sbjct: 297 LFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNL 356
Query: 104 DGQVLLGRELTVVFAEENR 122
DG++ GR L ++ A + +
Sbjct: 357 DGKIFQGRLLHILPASQKK 375
Score = 119 (46.9 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T ++++NL +D+R F +G ++ + +P+ + RGFGF FV +A A
Sbjct: 697 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKF-DRSARGFGFADFVSAREAENAMD 755
Query: 102 HMDGQVLLGRELTVVFAEE 120
+ LLGR L + FA E
Sbjct: 756 ALKNTHLLGRRLVLEFANE 774
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 120 (47.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I +I L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
Score = 35 (17.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 263 YGRDRDYSDHPS 274
>UNIPROTKB|Q0VCY7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9913 "Bos taurus" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0000395 GeneTree:ENSGT00700000104103
KO:K12890 OrthoDB:EOG4WH8N5 EMBL:BC119930 IPI:IPI00692211
RefSeq:NP_001069862.1 UniGene:Bt.864 ProteinModelPortal:Q0VCY7
SMR:Q0VCY7 STRING:Q0VCY7 PRIDE:Q0VCY7 Ensembl:ENSBTAT00000049486
GeneID:615796 KEGG:bta:615796 CTD:6426 InParanoid:Q0VCY7
OMA:QVMEDLD NextBio:20899791 Uniprot:Q0VCY7
Length = 248
Score = 109 (43.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V NL D R +DI F ++GAI+DI L ++ G P F F++F +P DA +A
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 104 DGQVLLGRELTVVFAEENR 122
DG G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
Score = 39 (18.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 187 RERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSR-TPK 224
R SY RS + +SP RSR +P+
Sbjct: 198 RSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPR 236
Score = 37 (18.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 181 HGQNYSRERSYSRS 194
+G++ SR RS SRS
Sbjct: 202 YGRSRSRSRSRSRS 215
Score = 35 (17.4 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 186 SRERSYSRSPAY 197
SR RS SRS +Y
Sbjct: 215 SRSRSNSRSRSY 226
>UNIPROTKB|Q07955 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA;TAS]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0001701
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471109
GO:GO:0060048 GO:GO:0006406 GO:GO:0071013 Reactome:REACT_1788
eggNOG:COG0724 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 GO:GO:0000395 KO:K12890 PDB:3BEG PDBsum:3BEG
CTD:6426 OMA:QVMEDLD EMBL:M72709 EMBL:M69040 EMBL:AB062124
EMBL:AK312781 EMBL:BC010264 EMBL:BC033785 IPI:IPI00215884
IPI:IPI00218591 IPI:IPI00218592 PIR:A40040 PIR:B40040 PIR:C40040
RefSeq:NP_001071634.1 RefSeq:NP_008855.1 UniGene:Hs.68714 PDB:1X4A
PDB:2O3D PDBsum:1X4A PDBsum:2O3D ProteinModelPortal:Q07955
SMR:Q07955 DIP:DIP-2155N IntAct:Q07955 MINT:MINT-5000565
STRING:Q07955 PhosphoSite:Q07955 DMDM:730773 PaxDb:Q07955
PeptideAtlas:Q07955 PRIDE:Q07955 DNASU:6426 Ensembl:ENST00000258962
Ensembl:ENST00000581979 Ensembl:ENST00000582730 GeneID:6426
KEGG:hsa:6426 UCSC:uc002ivi.3 UCSC:uc002ivj.3 GeneCards:GC17M056079
H-InvDB:HIX0173551 HGNC:HGNC:10780 HPA:CAB013073 MIM:600812
neXtProt:NX_Q07955 PharmGKB:PA35696 InParanoid:Q07955
PhylomeDB:Q07955 ChiTaRS:SRSF1 EvolutionaryTrace:Q07955
GenomeRNAi:6426 NextBio:24955 PMAP-CutDB:Q07955 Bgee:Q07955
CleanEx:HS_SFRS1 Genevestigator:Q07955 GermOnline:ENSG00000136450
Uniprot:Q07955
Length = 248
Score = 109 (43.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V NL D R +DI F ++GAI+DI L ++ G P F F++F +P DA +A
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 104 DGQVLLGRELTVVFAEENR 122
DG G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
Score = 39 (18.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 187 RERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSR-TPK 224
R SY RS + +SP RSR +P+
Sbjct: 198 RSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPR 236
Score = 37 (18.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 181 HGQNYSRERSYSRS 194
+G++ SR RS SRS
Sbjct: 202 YGRSRSRSRSRSRS 215
Score = 35 (17.4 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 186 SRERSYSRSPAY 197
SR RS SRS +Y
Sbjct: 215 SRSRSNSRSRSY 226
>UNIPROTKB|Q3YLA6 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9823 "Sus scrofa" [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice
site recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
GO:GO:0000395 GeneTree:ENSGT00700000104103 KO:K12890
OrthoDB:EOG4WH8N5 CTD:6426 OMA:QVMEDLD EMBL:DQ098951 EMBL:DQ098950
RefSeq:NP_001033096.1 UniGene:Ssc.7576 HSSP:Q07955
ProteinModelPortal:Q3YLA6 SMR:Q3YLA6 STRING:Q3YLA6 PRIDE:Q3YLA6
Ensembl:ENSSSCT00000019188 GeneID:654327 KEGG:ssc:654327
Uniprot:Q3YLA6
Length = 248
Score = 109 (43.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V NL D R +DI F ++GAI+DI L ++ G P F F++F +P DA +A
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 104 DGQVLLGRELTVVFAEENR 122
DG G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
Score = 39 (18.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 187 RERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSR-TPK 224
R SY RS + +SP RSR +P+
Sbjct: 198 RSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPR 236
Score = 37 (18.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 181 HGQNYSRERSYSRS 194
+G++ SR RS SRS
Sbjct: 202 YGRSRSRSRSRSRS 215
Score = 35 (17.4 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 186 SRERSYSRSPAY 197
SR RS SRS +Y
Sbjct: 215 SRSRSNSRSRSY 226
>MGI|MGI:98283 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IGI;IDA] [GO:0016607 "nuclear
speck" evidence=ISO;IDA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0060048 "cardiac muscle contraction"
evidence=IGI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98283 GO:GO:0005737
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
EMBL:AL593853 HOVERGEN:HBG002295 GO:GO:0000395
GeneTree:ENSGT00700000104103 KO:K12890 CTD:6426 EMBL:AK018176
EMBL:AK078715 EMBL:AK150535 EMBL:CU406964 EMBL:BC046773
EMBL:BC058627 IPI:IPI00420807 IPI:IPI00457656 IPI:IPI00515505
PIR:S26404 RefSeq:NP_001071635.1 RefSeq:NP_775550.2
UniGene:Mm.391719 UniGene:Mm.478968 PDB:1X4C PDBsum:1X4C
ProteinModelPortal:Q6PDM2 SMR:Q6PDM2 DIP:DIP-48723N IntAct:Q6PDM2
STRING:Q6PDM2 PhosphoSite:Q6PDM2 PaxDb:Q6PDM2 PRIDE:Q6PDM2
Ensembl:ENSMUST00000079866 Ensembl:ENSMUST00000139129 GeneID:110809
KEGG:mmu:110809 UCSC:uc007kvc.1 UCSC:uc007kvd.1 InParanoid:B2KGJ5
EvolutionaryTrace:Q6PDM2 NextBio:364697 Bgee:Q6PDM2
CleanEx:MM_SFRS1 Genevestigator:Q6PDM2
GermOnline:ENSMUSG00000018379 Uniprot:Q6PDM2
Length = 248
Score = 109 (43.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V NL D R +DI F ++GAI+DI L ++ G P F F++F +P DA +A
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 104 DGQVLLGRELTVVFAEENR 122
DG G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
Score = 39 (18.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 187 RERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSR-TPK 224
R SY RS + +SP RSR +P+
Sbjct: 198 RSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPR 236
Score = 37 (18.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 181 HGQNYSRERSYSRS 194
+G++ SR RS SRS
Sbjct: 202 YGRSRSRSRSRSRS 215
Score = 35 (17.4 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 186 SRERSYSRSPAY 197
SR RS SRS +Y
Sbjct: 215 SRSRSNSRSRSY 226
>RGD|1587490 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016607
"nuclear speck" evidence=IEA;ISO] [GO:0050733 "RS domain binding"
evidence=IEA;ISO] [GO:0060048 "cardiac muscle contraction"
evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1587490
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 EMBL:CH473948 GO:GO:0071013
GO:GO:0000395 KO:K12890 OrthoDB:EOG4WH8N5 CTD:6426 IPI:IPI00780927
RefSeq:NP_001103022.1 UniGene:Rn.84878 SMR:D4A9L2
Ensembl:ENSRNOT00000055706 GeneID:689890 KEGG:rno:689890
NextBio:739704 Uniprot:D4A9L2
Length = 248
Score = 109 (43.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V NL D R +DI F ++GAI+DI L ++ G P F F++F +P DA +A
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 104 DGQVLLGRELTVVFAEENR 122
DG G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
Score = 39 (18.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 187 RERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSR-TPK 224
R SY RS + +SP RSR +P+
Sbjct: 198 RSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPR 236
Score = 37 (18.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 181 HGQNYSRERSYSRS 194
+G++ SR RS SRS
Sbjct: 202 YGRSRSRSRSRSRS 215
Score = 35 (17.4 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 186 SRERSYSRSPAY 197
SR RS SRS +Y
Sbjct: 215 SRSRSNSRSRSY 226
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
+ L V L + +R+ F FG IK+ L RD + P+GFGFI F DDA +A
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 100 KRHMDGQVLLGRELTVVFAE 119
+ +DG+++ GR + V A+
Sbjct: 65 LKSLDGKIVDGRLIFVEVAK 84
>UNIPROTKB|F1S4R5 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0048025 GeneTree:ENSGT00700000104452
OMA:LKRSRYF EMBL:FP102731 Ensembl:ENSSSCT00000009286 Uniprot:F1S4R5
Length = 268
Score = 110 (43.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T + V NL ++ R F +G ++ +++ R+ P GF F++F +P DA +A R
Sbjct: 38 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVR 92
Query: 102 HMDGQVLLGRELTV 115
+DG+V+ G + V
Sbjct: 93 GLDGKVICGSRVRV 106
Score = 39 (18.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 182 GQNYSRERSYSR 193
G+ YSR RS SR
Sbjct: 170 GRRYSRSRSRSR 181
Score = 39 (18.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 183 QNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
+N SR RS+SRS SP RSR+
Sbjct: 157 KNRSRSRSHSRSRGRRYSRSRSRSRGRRSRSA-SPRRSRS 195
Score = 39 (18.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 182 GQNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
G Y + RS SRS + SP RSR+P
Sbjct: 216 GSRYFQSRSRSRSRSRSLSRPRSSRSKSRSP---SPKRSRSP 254
>UNIPROTKB|E2RJL3 [details] [associations]
symbol:SRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 OMA:QVMEDLD EMBL:AAEX03006566
ProteinModelPortal:E2RJL3 PRIDE:E2RJL3 Ensembl:ENSCAFT00000027630
NextBio:20895281 Uniprot:E2RJL3
Length = 253
Score = 109 (43.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V NL D R +DI F ++GAI+DI L ++ G P F F++F +P DA +A
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 104 DGQVLLGRELTVVFAEENR 122
DG G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
Score = 39 (18.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 187 RERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSR-TPK 224
R SY RS + +SP RSR +P+
Sbjct: 198 RSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPR 236
Score = 37 (18.1 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 181 HGQNYSRERSYSRS 194
+G++ SR RS SRS
Sbjct: 202 YGRSRSRSRSRSRS 215
Score = 35 (17.4 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 186 SRERSYSRSPAY 197
SR RS SRS +Y
Sbjct: 215 SRSRSNSRSRSY 226
>UNIPROTKB|J3KTL2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471109 UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1
EMBL:AC015813 ProteinModelPortal:J3KTL2 Ensembl:ENST00000584773
Uniprot:J3KTL2
Length = 253
Score = 109 (43.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V NL D R +DI F ++GAI+DI L ++ G P F F++F +P DA +A
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 104 DGQVLLGRELTVVFAEENR 122
DG G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
Score = 39 (18.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 187 RERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSR-TPK 224
R SY RS + +SP RSR +P+
Sbjct: 198 RSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPR 236
Score = 37 (18.1 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 181 HGQNYSRERSYSRS 194
+G++ SR RS SRS
Sbjct: 202 YGRSRSRSRSRSRS 215
Score = 35 (17.4 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 186 SRERSYSRSPAY 197
SR RS SRS +Y
Sbjct: 215 SRSRSNSRSRSY 226
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 119 (46.9 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
Score = 35 (17.4 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 265 YGRDRDYSDHPS 276
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 119 (46.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
Score = 35 (17.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 266 YGRDRDYSDHPS 277
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 119 (46.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
Score = 35 (17.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 266 YGRDRDYSDHPS 277
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 119 (46.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
Score = 35 (17.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 266 YGRDRDYSDHPS 277
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 119 (46.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
Score = 35 (17.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 266 YGRDRDYSDHPS 277
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 119 (46.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
Score = 35 (17.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 266 YGRDRDYSDHPS 277
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 119 (46.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 6 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 65
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 66 AARDMNGKSLDGKAIKV----EQATKPS 89
Score = 35 (17.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 267 YGRDRDYSDHPS 278
>UNIPROTKB|Q5R7H2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9601 "Pongo abelii" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG002295
GO:GO:0000395 KO:K12890 CTD:6426 EMBL:CR860145
RefSeq:NP_001126337.1 UniGene:Pab.7173 ProteinModelPortal:Q5R7H2
SMR:Q5R7H2 PRIDE:Q5R7H2 GeneID:100173318 KEGG:pon:100173318
InParanoid:Q5R7H2 Uniprot:Q5R7H2
Length = 248
Score = 109 (43.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V NL D R +DI F ++GAI+DI L ++ G P F F++F +P DA +A
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 104 DGQVLLGRELTVVFAEENR 122
DG G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
Score = 38 (18.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 187 RERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSR-TPK 224
R SY RS + +SP RSR +P+
Sbjct: 198 RSPSYGRSRSRSRSRSRNRSRSNSRSRSYSPRRSRGSPR 236
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 109 (43.4 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G + + + D +G RGF F+ F DD+ EA H +G L GR + V
Sbjct: 136 DLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANGMELDGRRIRVD 195
Query: 117 FAEENR 122
++ R
Sbjct: 196 YSITKR 201
Score = 40 (19.1 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
YSR RS SRS +Y
Sbjct: 260 YSRYRSRSRSRSY 272
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 118 (46.6 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
Score = 35 (17.4 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 266 YGRDRDYSDHPS 277
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 137 (53.3 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D L++RNL C +D++ F QFGA+ ++ +PR G+ RGFGF+QF +A +
Sbjct: 111 DKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKP-DGKMRGFGFVQFKNLLEAGK 169
Query: 99 AKRHMDGQVLLGRELTVVFA 118
A + M+ + + GR + V +A
Sbjct: 170 ALKGMNMKEIKGRTVAVDWA 189
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 118 (46.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F +FG I ++ L +D + + RGF F+ + P DA +
Sbjct: 5 DRPGKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKD 64
Query: 99 AKRHMDGQVLLGRELTV 115
A R M+G+ L G+ + V
Sbjct: 65 AAREMNGKPLDGKPIKV 81
Score = 34 (17.0 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 244 ERNGDRPPSQ 253
ERNG PP +
Sbjct: 146 ERNGGPPPKR 155
>UNIPROTKB|Q5ZMI0 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OrthoDB:EOG4Z62PZ EMBL:AADN02041256 EMBL:AADN02041257 EMBL:AJ719404
IPI:IPI00581520 RefSeq:NP_001026539.1 UniGene:Gga.16686 SMR:Q5ZMI0
STRING:Q5ZMI0 Ensembl:ENSGALT00000022426 GeneID:426265
KEGG:gga:426265 InParanoid:Q5ZMI0 OMA:YRSFSPR NextBio:20827924
Uniprot:Q5ZMI0
Length = 223
Score = 102 (41.0 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T + V NL ++ R F +G ++ +++ R+ P GF F++F +P DA +A
Sbjct: 9 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVL 63
Query: 102 HMDGQVLLGRELTV 115
+DG+++ G + V
Sbjct: 64 GLDGKIICGSRVRV 77
Score = 42 (19.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 182 GQNYSRERSYSRSP-AYDXXXXXXXXXXXXXXXXWSPSRSRT 222
G+ YSR RS SR + +SP RSR+
Sbjct: 138 GRRYSRSRSRSRGRRSRSASYRRSRSISPRRYRSFSPRRSRS 179
>ZFIN|ZDB-GENE-040718-354 [details] [associations]
symbol:srsf5b "serine/arginine-rich splicing factor
5b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-354 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:RKSYTRS EMBL:AL928866
EMBL:BC075982 IPI:IPI00512023 RefSeq:NP_001002610.1
UniGene:Dr.80489 STRING:Q6DHJ0 Ensembl:ENSDART00000023580
GeneID:436883 KEGG:dre:436883 CTD:436883 InParanoid:Q6DHJ0
NextBio:20831311 Uniprot:Q6DHJ0
Length = 285
Score = 107 (42.7 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ + L R +D+ R F+ +G I+DI L R GFGF++F +P DA +A +
Sbjct: 6 IFIGRLNPSAREKDVERFFKGYGRIRDIDLKR--------GFGFVEFDDPRDAEDAVYEL 57
Query: 104 DGQVLLGRELTVVFA 118
DG+ L +T+ A
Sbjct: 58 DGKELCNERVTIEHA 72
Score = 41 (19.5 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 186 SRERSYSRSPAYD 198
SR RS SRSP+ D
Sbjct: 270 SRSRSRSRSPSTD 282
Score = 38 (18.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 181 HGQNYSRERSYSRSP 195
H ++ SR RS S SP
Sbjct: 220 HNRSRSRSRSASASP 234
Score = 35 (17.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 182 GQNYSRERSYSRS 194
G++ SR RS SRS
Sbjct: 202 GRSASRSRSRSRS 214
Score = 34 (17.0 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTPK 224
SR++S SRS + S SRS +PK
Sbjct: 182 SRKKSRSRSRSNSSSRSRSRGRSASRSR--SRSRSHSPK 218
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 135 (52.6 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 29/87 (33%), Positives = 55/87 (63%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T++ V+NLR D + ++ F QFG + + + RD +G+ RGFGFI F + ++A +A
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVD 249
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
HM+G+ + G+ L V A++ ++ +++
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNEL 276
Score = 98 (39.6 bits), Expect = 0.00043, P = 0.00043
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V+NL + ++ F +G I + + S +GFGF+ F P++A +A
Sbjct: 295 NLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTE 352
Query: 103 MDGQVLLGRELTVVFAE--ENRK 123
M+G+++ + L V A+ E RK
Sbjct: 353 MNGRIVGTKPLYVALAQRKEERK 375
>GENEDB_PFALCIPARUM|PF14_0057 [details] [associations]
symbol:PF14_0057 "RNA binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+++ N+ + R + I+ FE+FG IK+++L D +G +G+ F+++ DA A M
Sbjct: 25 IIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAIDEM 84
Query: 104 DGQVLLGRELTV--VFAEENRK 123
DG +LL +E+ V F +E K
Sbjct: 85 DGTMLLNQEIHVDWAFVQEKSK 106
>UNIPROTKB|Q8IM34 [details] [associations]
symbol:PF14_0057 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+++ N+ + R + I+ FE+FG IK+++L D +G +G+ F+++ DA A M
Sbjct: 25 IIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAIDEM 84
Query: 104 DGQVLLGRELTV--VFAEENRK 123
DG +LL +E+ V F +E K
Sbjct: 85 DGTMLLNQEIHVDWAFVQEKSK 106
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 136 (52.9 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L +RNL + C +D++ F FG ++ +++P D + P+GF +I F + DDA A +
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 104 DGQVLLGRELTVVFAE 119
D + GR L V+ A+
Sbjct: 385 DAKPFQGRLLHVLPAK 400
Score = 112 (44.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T +L++NL + +D++ +G ++ + +P+ + RGF F +FV +AA A R
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKF-DRSARGFAFAEFVTAREAANAMR 779
Query: 102 HMDGQVLLGRELTVVFA 118
+ LLGR L + +A
Sbjct: 780 ALKNTHLLGRHLVLQYA 796
>ZFIN|ZDB-GENE-040426-1950 [details] [associations]
symbol:srsf1a "serine/arginine-rich splicing
factor 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1950 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890
EMBL:BX511308 EMBL:BC055511 EMBL:BC153596 EMBL:BC153597
IPI:IPI00487017 RefSeq:NP_998180.1 UniGene:Dr.75732
ProteinModelPortal:Q7SXP4 SMR:Q7SXP4 STRING:Q7SXP4
Ensembl:ENSDART00000080413 GeneID:406288 KEGG:dre:406288 CTD:406288
InParanoid:Q7SXP4 OrthoDB:EOG4WH8N5 NextBio:20817919
ArrayExpress:Q7SXP4 Bgee:Q7SXP4 Uniprot:Q7SXP4
Length = 257
Score = 108 (43.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V NL D R +D+ F ++GAI+DI L ++ G P F F++F +P DA +A
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYAR 73
Query: 104 DGQVLLGRELTVVFAEENR 122
DG G L V F R
Sbjct: 74 DGYDYDGYRLRVEFPRSGR 92
Score = 37 (18.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 181 HGQNYSRERSYSRS 194
+G++ SR RS SRS
Sbjct: 211 YGRSRSRSRSRSRS 224
Score = 37 (18.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 187 RERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSR 221
R SY RS + +SP RSR
Sbjct: 207 RSPSYGRSRSRSRSRSRSRSRSNNRSRSYSPRRSR 241
Score = 33 (16.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 184 NYSRERSYSRS 194
+Y R RS SRS
Sbjct: 210 SYGRSRSRSRS 220
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 116 (45.9 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I +I L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
R M+G+ L G+ + V E KPS
Sbjct: 65 VARDMNGKSLDGKAIKV----EQATKPS 88
Score = 35 (17.4 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 263 YGRDREYSDHPS 274
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 116 (45.9 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I +I L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
R M+G+ L G+ + V E KPS
Sbjct: 65 VARDMNGKSLDGKAIKV----EQATKPS 88
Score = 35 (17.4 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 185 YSRERSYSRSPA 196
Y R+R YS P+
Sbjct: 263 YGRDREYSDHPS 274
>POMBASE|SPBC18H10.03 [details] [associations]
symbol:tif35 "translation initiation factor eIF3g"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006413 "translational initiation"
evidence=ISS] [GO:0016282 "eukaryotic 43S preinitiation complex"
evidence=IDA] [GO:0071540 "eukaryotic translation initiation factor
3 complex, eIF3e" evidence=IDA] [GO:0071541 "eukaryotic translation
initiation factor 3 complex, eIF3m" evidence=IDA] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC18H10.03 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
GO:GO:0003723 GO:GO:0003743 eggNOG:COG0724 GO:GO:0002183 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
GO:GO:0016282 GO:GO:0071540 GO:GO:0071541 HOGENOM:HOG000239560
OMA:NSEFDAP OrthoDB:EOG4QJVX7 EMBL:AB011823 EMBL:D89144 PIR:T39767
RefSeq:NP_595727.1 ProteinModelPortal:P78795 STRING:P78795
EnsemblFungi:SPBC18H10.03.1 GeneID:2540819 KEGG:spo:SPBC18H10.03
NextBio:20801936 Uniprot:P78795
Length = 282
Score = 128 (50.1 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D +L V NL D R E++R F +FG I+ +YL +D +G +GF F+ + + D A +
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIK 258
Query: 99 AKRHMDG 105
A+ +DG
Sbjct: 259 ARDRLDG 265
>ZFIN|ZDB-GENE-050913-95 [details] [associations]
symbol:srsf7 "serine/arginine-rich splicing factor
7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-050913-95
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HOVERGEN:HBG107480 OrthoDB:EOG4Z62PZ
EMBL:BC133851 IPI:IPI00845046 UniGene:Dr.89486
ProteinModelPortal:A3KNI1 SMR:A3KNI1 PRIDE:A3KNI1 eggNOG:NOG299298
Uniprot:A3KNI1
Length = 210
Score = 107 (42.7 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T + V NL ++ R F +G ++ +++ R+ P GF F++F +P DA ++ R
Sbjct: 11 TKVYVGNLGTGAGKGELERAFGYYGPLRSVWIARN-----PAGFAFVEFEDPRDAEDSVR 65
Query: 102 HMDGQVLLGRELTV 115
+DG+V+ G + V
Sbjct: 66 GLDGKVICGSRVRV 79
Score = 33 (16.7 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 186 SRERSYSRSPAY 197
SR RS+SR Y
Sbjct: 130 SRSRSHSRGRRY 141
>ZFIN|ZDB-GENE-040825-2 [details] [associations]
symbol:snrnp70 "small nuclear ribonucleoprotein 70
(U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
Length = 495
Score = 132 (51.5 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V + +D +RR FE +G IK IY+ + +G+PRG+ FI++ D A +H
Sbjct: 104 TLFVARINYDTTESKLRREFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYKH 163
Query: 103 MDGQVLLGRELTV 115
DG+ + GR + V
Sbjct: 164 ADGKKIDGRRVLV 176
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 106 (42.4 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G++ + + D +G RGF F+ F DDA EA +G L GR + V
Sbjct: 150 DLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEAMERANGMELDGRRIRVD 209
Query: 117 FAEENR 122
++ R
Sbjct: 210 YSITKR 215
Score = 40 (19.1 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
YSR RS SRS +Y
Sbjct: 280 YSRYRSRSRSRSY 292
>TAIR|locus:2050024 [details] [associations]
symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
Length = 1003
Score = 135 (52.6 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L++RNL +P DI+ F G + D+++P+++ +G P+GF F++F DAA A +
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392
Query: 104 DGQVLLGRELTVVFA 118
+G + R + V +A
Sbjct: 393 NGHMFGKRPIAVDWA 407
>TAIR|locus:2101714 [details] [associations]
symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
Length = 427
Score = 130 (50.8 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V L ++ I+R FE +G IK ++L D + +P+G+ FI+++ D A +
Sbjct: 139 TLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQ 198
Query: 103 MDGQVLLGRELTVVFAEENRKKPS 126
DGQ + GR + +V E R P+
Sbjct: 199 ADGQKIDGRRV-LVDVERGRTVPN 221
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 123 (48.4 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A + M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 168 GGQWLGGRQIRTNWA--TRKPPA 188
Score = 94 (38.1 bits), Expect = 0.00083, P = 0.00083
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
++P +L V NL D I + F Q G K+ + D +P + F++F E AA
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAA 61
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPSD 127
A M+G+ ++G+E+ V +A + D
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKD 90
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
LLV L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTVVFA---EENRKK 124
+G+ + GR++ V A ENR +
Sbjct: 68 NGKSVDGRQIRVDQAGKSSENRSR 91
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
LLV L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTVVFA---EENRKK 124
+G+ + GR++ V A ENR +
Sbjct: 68 NGKSVDGRQIRVDQAGKSSENRSR 91
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
LLV L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTVVFA---EENRKK 124
+G+ + GR++ V A ENR +
Sbjct: 68 NGKSVDGRQIRVDQAGKSSENRSR 91
>UNIPROTKB|E2QRU8 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 Ensembl:ENSCAFT00000005969
Uniprot:E2QRU8
Length = 386
Score = 128 (50.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V + +D +RR FE +G IK I++ SG+PRG+ FI++ D A +H
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 103 MDGQVLLGRELTV 115
DG+ + GR + V
Sbjct: 164 ADGKKIDGRRVLV 176
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 127 (49.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + +D+R F FG I D + +D +G+ +G+GFI F+ DA A + M
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
+GQ L GR++ +A +KPS
Sbjct: 159 NGQWLGGRQIRTNWAT---RKPS 178
Score = 96 (38.9 bits), Expect = 0.00031, P = 0.00031
Identities = 27/89 (30%), Positives = 42/89 (47%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P +L V NL D I + F Q G K + D +P + F++F E AA
Sbjct: 6 DQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP--YCFVEFYENRHAAA 63
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPSD 127
A M+G+ +LG+++ V +A + D
Sbjct: 64 ALAAMNGRKILGKDMKVNWASTPSSQKKD 92
>FB|FBgn0036018 [details] [associations]
symbol:CG3335 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0004386 eggNOG:COG0724 HSSP:Q61474 EMBL:AY113652
ProteinModelPortal:Q8MYR4 SMR:Q8MYR4 STRING:Q8MYR4 PaxDb:Q8MYR4
PRIDE:Q8MYR4 FlyBase:FBgn0036018 HOGENOM:HOG000132447
InParanoid:Q8MYR4 OrthoDB:EOG4M63ZP ArrayExpress:Q8MYR4 Bgee:Q8MYR4
Uniprot:Q8MYR4
Length = 918
Score = 133 (51.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ RNL + ED+R+ FEQFG + ++ LP D + + +GFG + ++ P+ A +A +
Sbjct: 366 IFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTL 425
Query: 104 DGQVLLGRELTVVFAEENRKKPSD 127
DG GR L ++ +++ K P +
Sbjct: 426 DGTDFHGRLLHLLPSKDIEKNPKE 449
Score = 104 (41.7 bits), Expect = 0.00016, P = 0.00016
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEP--RGFGFIQFVEPDDAAEA 99
T +LVRN+ + ++R F+ FG ++ + +P+ +GE RGFGF+ ++ AEA
Sbjct: 785 TKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDYMSK---AEA 841
Query: 100 KRHMD 104
KR D
Sbjct: 842 KRAFD 846
>UNIPROTKB|Q66II8 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
Length = 471
Score = 129 (50.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V + +D +RR FE +G IK I++ + SG+PRG+ FI++ D A +H
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 103 MDGQVLLGRELTV 115
DG+ + GR + V
Sbjct: 164 ADGKKIDGRRVLV 176
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A HM
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 104 DGQVLLGREL 113
GQ L GR++
Sbjct: 120 GGQWLGGRQI 129
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L + E + + F ++G + ++ + +D S RGFGF+ F P+DA +A M
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 68 NGKSVDGRQIRV 79
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L + L D + + F ++G I ++++ R+ + RGFGF+ F PDDA +A M
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 104 DGQVLLGRELTV 115
+G+ + GR + V
Sbjct: 67 NGKSVDGRTIRV 78
>ZFIN|ZDB-GENE-030131-5228 [details] [associations]
symbol:rnps1 "RNA binding protein S1, serine-rich
domain" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5228 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 GeneTree:ENSGT00700000104336 CTD:10921
eggNOG:NOG331533 HOGENOM:HOG000044325 KO:K14325 EMBL:BC057251
EMBL:BC065953 IPI:IPI00490683 RefSeq:NP_956055.1 UniGene:Dr.75879
ProteinModelPortal:Q6PG31 STRING:Q6PG31 Ensembl:ENSDART00000128731
GeneID:327020 KEGG:dre:327020 InParanoid:Q6PG31 NextBio:20809844
Bgee:Q6PG31 Uniprot:Q6PG31
Length = 283
Score = 125 (49.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRD-YYSGEPRGFGFIQFVEPDDAAEA 99
PT L + L + + I+ F +G IK I +P D + +G+ ++++ P+DA +A
Sbjct: 136 PTKLYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVSKGYAYVEYESPEDAQKA 195
Query: 100 KRHMDGQVLLGRELTV--VFAEENRKKP 125
+HMDG + G+E+T + A+ R P
Sbjct: 196 LKHMDGGQIDGQEITATAILAQRIRPAP 223
>UNIPROTKB|F1S4B2 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
OMA:RKSYTRS Ensembl:ENSSSCT00000002574 Uniprot:F1S4B2
Length = 263
Score = 104 (41.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ + L R +D+ R F+ +G I+DI L R GFGF++F +P DA +A +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYEL 57
Query: 104 DGQVLLGRELTVVFA 118
DG+ L +T+ A
Sbjct: 58 DGKELCSERVTIEHA 72
Score = 38 (18.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
++YSR RS SRS
Sbjct: 210 KSYSRSRSRSRS 221
Score = 36 (17.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 186 SRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
S+ RS SRSP + S SRSR+
Sbjct: 223 SKSRSVSRSPVPEKSQKRGSSSRSRSRSR-SRSRSRS 258
Score = 35 (17.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 183 QNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
+ +SR RS SRS +S SRSR+
Sbjct: 181 KRHSRSRSRSRSRTRSSSRSRSRSRSRRSKS-YSRSRSRS 219
Score = 33 (16.7 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 186 SRERSYSRSPAYD 198
SR RS SRS + D
Sbjct: 248 SRSRSRSRSRSVD 260
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPA 196
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPA 196
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 127 (49.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A HM
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 159 GGQWLGGRQIRTNWA--TRKPPA 179
Score = 103 (41.3 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100
P +L V NL D I + F Q G K + ++ S +P + F++F E DAA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAAL 65
Query: 101 RHMDGQVLLGRELTVVFAEENRKKPSD 127
M+G+ +LG+E+ V +A + D
Sbjct: 66 AAMNGRKILGKEVKVNWATTPSSQKKD 92
>UNIPROTKB|P08621 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH471177
GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724 PDB:3CW1 PDB:3PGW
PDBsum:3CW1 PDBsum:3PGW KO:K11093 OMA:KKSRGYL InterPro:IPR022023
Pfam:PF12220 CTD:6625 OrthoDB:EOG4CJVJ7 EMBL:X04654 EMBL:X06814
EMBL:X06815 EMBL:X06817 EMBL:X07402 EMBL:X06816 EMBL:X06812
EMBL:X06811 EMBL:X07401 EMBL:X07403 EMBL:M22636 EMBL:M57939
EMBL:M57929 EMBL:M57930 EMBL:M57932 EMBL:M57934 EMBL:M57937
EMBL:M57935 EMBL:AK096783 EMBL:X84841 EMBL:AL117507 EMBL:BC001315
IPI:IPI00219483 IPI:IPI00219484 IPI:IPI00219485 IPI:IPI00290204
PIR:A25707 PIR:S00674 RefSeq:NP_003080.2 UniGene:Hs.467097 PDB:2L5I
PDB:2L5J PDBsum:2L5I PDBsum:2L5J ProteinModelPortal:P08621
SMR:P08621 DIP:DIP-29406N IntAct:P08621 MINT:MINT-5004037
STRING:P08621 PhosphoSite:P08621 DMDM:13635663 PaxDb:P08621
PRIDE:P08621 Ensembl:ENST00000221448 Ensembl:ENST00000401730
Ensembl:ENST00000544278 GeneID:6625 KEGG:hsa:6625 UCSC:uc002pmk.3
GeneCards:GC19P049588 HGNC:HGNC:11150 HPA:CAB001718 MIM:180740
neXtProt:NX_P08621 PharmGKB:PA35992 InParanoid:P08621
ChiTaRS:SNRNP70 EvolutionaryTrace:P08621 GenomeRNAi:6625
NextBio:25805 PMAP-CutDB:P08621 ArrayExpress:P08621 Bgee:P08621
Genevestigator:P08621 GermOnline:ENSG00000104852 Uniprot:P08621
Length = 437
Score = 128 (50.1 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V + +D +RR FE +G IK I++ SG+PRG+ FI++ D A +H
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 103 MDGQVLLGRELTV 115
DG+ + GR + V
Sbjct: 164 ADGKKIDGRRVLV 176
>MGI|MGI:98287 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611 "response to
wounding" evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0050733 "RS domain binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98287 GO:GO:0009611 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 EMBL:CH466590 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6430
EMBL:AF020308 EMBL:AK146624 EMBL:AC125092 EMBL:BC082593
IPI:IPI00314709 IPI:IPI00830743 RefSeq:NP_001073162.1
RefSeq:NP_001073163.1 RefSeq:NP_033185.2 UniGene:Mm.43331
ProteinModelPortal:O35326 DIP:DIP-48724N STRING:O35326
PhosphoSite:O35326 PaxDb:O35326 PRIDE:O35326
Ensembl:ENSMUST00000094693 Ensembl:ENSMUST00000110352
Ensembl:ENSMUST00000110356 GeneID:20384 KEGG:mmu:20384
UCSC:uc007obn.1 NextBio:298306 Genevestigator:O35326
GermOnline:ENSMUSG00000021134 Uniprot:O35326
Length = 269
Score = 104 (41.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ + L R +D+ R F+ +G I+DI L R GFGF++F +P DA +A +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYEL 57
Query: 104 DGQVLLGRELTVVFA 118
DG+ L +T+ A
Sbjct: 58 DGKELCSERVTIEHA 72
Score = 38 (18.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
++YSR RS SRS
Sbjct: 209 KSYSRSRSRSRS 220
>RGD|3664 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611
"response to wounding" evidence=ISO] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0050733 "RS domain binding" evidence=ISO]
[GO:0051726 "regulation of cell cycle" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0051726
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 CTD:6430
OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683 EMBL:BC058479 EMBL:L33267
IPI:IPI00201490 IPI:IPI00231768 PIR:B47112 RefSeq:NP_001182434.1
RefSeq:NP_001182435.1 RefSeq:NP_062130.2 UniGene:Rn.54448
ProteinModelPortal:Q09167 SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167
PRIDE:Q09167 Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 104 (41.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ + L R +D+ R F+ +G I+DI L R GFGF++F +P DA +A +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYEL 57
Query: 104 DGQVLLGRELTVVFA 118
DG+ L +T+ A
Sbjct: 58 DGKELCSERVTIEHA 72
Score = 38 (18.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
++YSR RS SRS
Sbjct: 209 KSYSRSRSRSRS 220
>UNIPROTKB|Q09167 [details] [associations]
symbol:Srsf5 "Serine/arginine-rich splicing factor 5"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0006355 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0051726 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K12893 CTD:6430 OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683
EMBL:BC058479 EMBL:L33267 IPI:IPI00201490 IPI:IPI00231768
PIR:B47112 RefSeq:NP_001182434.1 RefSeq:NP_001182435.1
RefSeq:NP_062130.2 UniGene:Rn.54448 ProteinModelPortal:Q09167
SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167 PRIDE:Q09167
Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 104 (41.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ + L R +D+ R F+ +G I+DI L R GFGF++F +P DA +A +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYEL 57
Query: 104 DGQVLLGRELTVVFA 118
DG+ L +T+ A
Sbjct: 58 DGKELCSERVTIEHA 72
Score = 38 (18.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
++YSR RS SRS
Sbjct: 209 KSYSRSRSRSRS 220
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 127 (49.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A HM
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 159 GGQWLGGRQIRTNWA--TRKPPA 179
Score = 103 (41.3 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100
P +L V NL D I + F Q G K + ++ S +P + F++F E DAA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAAL 65
Query: 101 RHMDGQVLLGRELTVVFAEENRKKPSD 127
M+G+ +LG+E+ V +A + D
Sbjct: 66 AAMNGRKILGKEVKVNWATTPSSQKKD 92
>UNIPROTKB|F6V5G7 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 Ensembl:ENSCAFT00000005969
EMBL:AAEX03000805 RefSeq:XP_541503.2 ProteinModelPortal:F6V5G7
GeneID:484388 KEGG:cfa:484388 Uniprot:F6V5G7
Length = 439
Score = 128 (50.1 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V + +D +RR FE +G IK I++ SG+PRG+ FI++ D A +H
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 103 MDGQVLLGRELTV 115
DG+ + GR + V
Sbjct: 164 ADGKKIDGRRVLV 176
>FB|FBgn0028554 [details] [associations]
symbol:x16 species:7227 "Drosophila melanogaster" [GO:0005634
"nucleus" evidence=IDA;NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS;NAS] [GO:0005681 "spliceosomal
complex" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376 "mRNA splice
site selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007399 "nervous system development"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IPI] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P19339 GO:GO:0071011 GO:GO:0071013 GO:GO:0006376
GeneTree:ENSGT00700000104452 eggNOG:NOG315521 KO:K12896 OMA:FARECRN
EMBL:AF232774 EMBL:AY095057 EMBL:AJ249466 RefSeq:NP_723226.1
UniGene:Dm.33422 SMR:Q9V3V0 STRING:Q9V3V0
EnsemblMetazoa:FBtr0079368 GeneID:33967 KEGG:dme:Dmel_CG10203
UCSC:CG10203-RA CTD:33967 FlyBase:FBgn0028554 InParanoid:Q9V3V0
OrthoDB:EOG40P2QD GenomeRNAi:33967 NextBio:786184 Uniprot:Q9V3V0
Length = 258
Score = 105 (42.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 46 VRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105
V +L ++ R D+ F +G+++ +++ R+ P GF F++F DAA+A R +DG
Sbjct: 12 VGDLGNNARKNDLEYVFGAYGSLRSVWIARN-----PPGFAFVEFESARDAADAVRGLDG 66
Query: 106 QVLLGRELTV 115
+ + GR V
Sbjct: 67 RTVCGRRARV 76
Score = 36 (17.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 182 GQNYSRERSYSRSPA 196
G SR RS S SPA
Sbjct: 222 GSPRSRSRSRSASPA 236
>MGI|MGI:98341 [details] [associations]
symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98341 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 OrthoDB:EOG4CJVJ7 ChiTaRS:SNRNP70
EMBL:AK133115 EMBL:AK146729 EMBL:X15769 EMBL:X15770 EMBL:X15771
EMBL:X15772 EMBL:X15774 EMBL:X15775 EMBL:X15776 IPI:IPI00230541
IPI:IPI00625105 PIR:S04336 PIR:S04824 RefSeq:NP_033250.3
UniGene:Mm.216386 ProteinModelPortal:Q62376 SMR:Q62376
MINT:MINT-1868298 STRING:Q62376 PhosphoSite:Q62376 PaxDb:Q62376
PRIDE:Q62376 Ensembl:ENSMUST00000074575 GeneID:20637 KEGG:mmu:20637
HOVERGEN:HBG094947 InParanoid:Q62376 NextBio:299035 Bgee:Q62376
Genevestigator:Q62376 GermOnline:ENSMUSG00000063511 Uniprot:Q62376
Length = 448
Score = 128 (50.1 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V + +D +RR FE +G IK I++ SG+PRG+ FI++ D A +H
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 103 MDGQVLLGRELTV 115
DG+ + GR + V
Sbjct: 164 ADGKKIDGRRVLV 176
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A HM
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 175 GGQWLGGRQIRTNWA--TRKPPA 195
>UNIPROTKB|A6H7B7 [details] [associations]
symbol:SFRS5 "SFRS5 protein" species:9913 "Bos taurus"
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6430 OMA:RKSYTRS OrthoDB:EOG4RJG2V EMBL:DAAA02029514
EMBL:BC146185 IPI:IPI00687732 RefSeq:NP_001092399.1
UniGene:Bt.46079 STRING:A6H7B7 Ensembl:ENSBTAT00000015408
GeneID:510474 KEGG:bta:510474 InParanoid:A6H7B7 NextBio:20869461
Uniprot:A6H7B7
Length = 272
Score = 104 (41.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ + L R +D+ R F+ +G I+DI L R GFGF++F +P DA +A +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYEL 57
Query: 104 DGQVLLGRELTVVFA 118
DG+ L +T+ A
Sbjct: 58 DGKELCSERVTIEHA 72
Score = 38 (18.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
++YSR RS SRS
Sbjct: 210 KSYSRSRSRSRS 221
Score = 35 (17.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 183 QNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
+ +SR RS SRS +S SRSR+
Sbjct: 181 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS-YSRSRSRS 219
Score = 34 (17.0 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 186 SRERSYSRSP 195
S+ RS SRSP
Sbjct: 223 SKSRSVSRSP 232
Score = 33 (16.7 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 186 SRERSYSRSPAYD 198
SR RS SRS + D
Sbjct: 257 SRSRSRSRSRSVD 269
>UNIPROTKB|E2R8E5 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6430 OMA:RKSYTRS EMBL:AAEX03005813 RefSeq:XP_867135.1
RefSeq:XP_867196.2 ProteinModelPortal:E2R8E5
Ensembl:ENSCAFT00000026276 GeneID:490754 KEGG:cfa:490754
NextBio:20863714 Uniprot:E2R8E5
Length = 272
Score = 104 (41.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ + L R +D+ R F+ +G I+DI L R GFGF++F +P DA +A +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYEL 57
Query: 104 DGQVLLGRELTVVFA 118
DG+ L +T+ A
Sbjct: 58 DGKELCSERVTIEHA 72
Score = 38 (18.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
++YSR RS SRS
Sbjct: 210 KSYSRSRSRSRS 221
Score = 35 (17.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 183 QNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
+ +SR RS SRS +S SRSR+
Sbjct: 181 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS-YSRSRSRS 219
Score = 34 (17.0 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 186 SRERSYSRSP 195
S+ RS SRSP
Sbjct: 223 SKSRSVSRSP 232
Score = 33 (16.7 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 186 SRERSYSRSPAYD 198
SR RS SRS + D
Sbjct: 257 SRSRSRSRSRSVD 269
>UNIPROTKB|Q13243 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006406 "mRNA export from
nucleus" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0031124 "mRNA
3'-end processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051726 GO:GO:0006406 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006376 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 KO:K12893 EMBL:U30826 EMBL:U30884 EMBL:U30827
EMBL:BT007089 EMBL:AK311805 EMBL:CR542167 EMBL:CR542182
EMBL:BX640605 EMBL:AB451250 EMBL:BC018823 EMBL:BC040209
EMBL:AF020307 IPI:IPI00012341 IPI:IPI00221286 IPI:IPI00413654
PIR:S59042 RefSeq:NP_001034554.1 RefSeq:NP_008856.2
UniGene:Hs.632326 ProteinModelPortal:Q13243 SMR:Q13243
IntAct:Q13243 MINT:MINT-1400587 STRING:Q13243 PhosphoSite:Q13243
DMDM:3929378 PaxDb:Q13243 PRIDE:Q13243 DNASU:6430
Ensembl:ENST00000394366 Ensembl:ENST00000553521
Ensembl:ENST00000553635 Ensembl:ENST00000557154 GeneID:6430
KEGG:hsa:6430 UCSC:uc001xll.3 CTD:6430 GeneCards:GC14P070234
HGNC:HGNC:10787 HPA:HPA043484 MIM:600914 neXtProt:NX_Q13243
PharmGKB:PA35703 InParanoid:Q13243 OMA:RKSYTRS OrthoDB:EOG4RJG2V
PhylomeDB:Q13243 ChiTaRS:SRSF5 GenomeRNAi:6430 NextBio:24973
ArrayExpress:Q13243 Bgee:Q13243 CleanEx:HS_SFRS5
Genevestigator:Q13243 GermOnline:ENSG00000100650 Uniprot:Q13243
Length = 272
Score = 104 (41.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ + L R +D+ R F+ +G I+DI L R GFGF++F +P DA +A +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYEL 57
Query: 104 DGQVLLGRELTVVFA 118
DG+ L +T+ A
Sbjct: 58 DGKELCSERVTIEHA 72
Score = 38 (18.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
++YSR RS SRS
Sbjct: 210 KSYSRSRSRSRS 221
Score = 35 (17.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 183 QNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
+ +SR RS SRS +S SRSR+
Sbjct: 181 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS-YSRSRSRS 219
Score = 34 (17.0 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 186 SRERSYSRSP 195
S+ RS SRSP
Sbjct: 225 SKSRSVSRSP 234
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPA 196
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + +DIR F FG I D + +D +G+ +G+GF+ F DA A HM
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 177 GGQWLGGRQIRTNWA--TRKPPA 197
>UNIPROTKB|I3LNE5 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:FP102974 Ensembl:ENSSSCT00000022304 Uniprot:I3LNE5
Length = 452
Score = 128 (50.1 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V + +D +RR FE +G IK I++ SG+PRG+ FI++ D A +H
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 103 MDGQVLLGRELTV 115
DG+ + GR + V
Sbjct: 164 ADGKKIDGRRVLV 176
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPA 196
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPA 196
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPA 196
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPA 196
>UNIPROTKB|C9JE21 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010655
EMBL:AC018635 HGNC:HGNC:21863 ChiTaRS:RBM28 IPI:IPI00944978
ProteinModelPortal:C9JE21 SMR:C9JE21 STRING:C9JE21
Ensembl:ENST00000459726 ArrayExpress:C9JE21 Bgee:C9JE21
Uniprot:C9JE21
Length = 204
Score = 120 (47.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D L++RNL C +D++ F QFGA+ ++ +PR G+ RGFGF+QF +A +
Sbjct: 145 DKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKP-DGKMRGFGFVQFKNLLEAGK 203
Query: 99 A 99
A
Sbjct: 204 A 204
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
S+ V N+ + PE+I+ F+ G+I + + D ++G+P+G+ +++F EP A+A
Sbjct: 69 SIFVGNVDYGASPEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALV- 127
Query: 103 MDGQVLLGRELTVV 116
++ V GR L VV
Sbjct: 128 LNESVFRGRNLKVV 141
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 102 (41.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G + + + D +G RGF F+ F DD+ EA +G L GR + V
Sbjct: 134 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
Query: 117 FAEENR 122
++ R
Sbjct: 194 YSITKR 199
Score = 40 (19.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
YSR RS SRS +Y
Sbjct: 264 YSRYRSRSRSRSY 276
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 102 (41.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G + + + D +G RGF F+ F DD+ EA +G L GR + V
Sbjct: 134 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
Query: 117 FAEENR 122
++ R
Sbjct: 194 YSITKR 199
Score = 40 (19.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
YSR RS SRS +Y
Sbjct: 262 YSRYRSRSRSRSY 274
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 102 (41.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G + + + D +G RGF F+ F DD+ EA +G L GR + V
Sbjct: 134 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
Query: 117 FAEENR 122
++ R
Sbjct: 194 YSITKR 199
Score = 40 (19.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
YSR RS SRS +Y
Sbjct: 264 YSRYRSRSRSRSY 276
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 102 (41.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G + + + D +G RGF F+ F DD+ EA +G L GR + V
Sbjct: 132 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
Query: 117 FAEENR 122
++ R
Sbjct: 192 YSITKR 197
Score = 40 (19.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
YSR RS SRS +Y
Sbjct: 264 YSRYRSRSRSRSY 276
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 102 (41.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G + + + D +G RGF F+ F DD+ EA +G L GR + V
Sbjct: 134 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
Query: 117 FAEENR 122
++ R
Sbjct: 194 YSITKR 199
Score = 40 (19.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
YSR RS SRS +Y
Sbjct: 265 YSRYRSRSRSRSY 277
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 102 (41.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G + + + D +G RGF F+ F DD+ EA +G L GR + V
Sbjct: 132 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
Query: 117 FAEENR 122
++ R
Sbjct: 192 YSITKR 197
Score = 40 (19.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 185 YSRERSYSRSPAY 197
YSR RS SRS +Y
Sbjct: 265 YSRYRSRSRSRSY 277
>WB|WBGene00004388 [details] [associations]
symbol:rnp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0007281 GO:GO:0040020 EMBL:FO080195
GeneTree:ENSGT00700000104336 eggNOG:NOG331533 KO:K14325
RefSeq:NP_497276.2 ProteinModelPortal:Q21155 SMR:Q21155
IntAct:Q21155 STRING:Q21155 PaxDb:Q21155 EnsemblMetazoa:K02F3.11.1
EnsemblMetazoa:K02F3.11.2 GeneID:175244 KEGG:cel:CELE_K02F3.11
UCSC:K02F3.11.1 CTD:175244 WormBase:K02F3.11 HOGENOM:HOG000015855
InParanoid:Q21155 OMA:MIDMPVN NextBio:887378 Uniprot:Q21155
Length = 289
Score = 105 (42.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 21/73 (28%), Positives = 44/73 (60%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRD-YYSGEPRGFGFIQFVEPDDAAEAKRH 102
++++NL + + F +GAIK++ LP D +++ RG+G++++ +DA ++ +H
Sbjct: 135 VVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKH 194
Query: 103 MDGQVLLGRELTV 115
MDG + G + V
Sbjct: 195 MDGGQIDGMAVHV 207
Score = 37 (18.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 182 GQNYSRERSYSRSPA 196
G N R S SRSPA
Sbjct: 269 GPNRFRRASRSRSPA 283
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 131 (51.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
++V+NL + +D+ F FG +K + +P+ + RGF F++F+ P +A A +
Sbjct: 765 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKF-DKSARGFAFVEFLLPKEAENAMDQL 823
Query: 104 DGQVLLGRELTVVFAEEN 121
G LLGR L + +AEE+
Sbjct: 824 HGVHLLGRRLVMQYAEED 841
Score = 127 (49.8 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L +RN+ + + ED R+ F FG ++++++ D +G+ +GF ++ F + +A A +
Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVEL 406
Query: 104 DGQVLLGRELTVVFAEENRKKPSD 127
D Q+ GR L ++ EE + D
Sbjct: 407 DKQIFQGRLLHILPGEEKKSHRLD 430
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 130 (50.8 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D L++RNL C +D++ F QFG I ++ +PR G+ RGF F+QF +A +
Sbjct: 111 DKKARLIIRNLSFKCSEDDLKTVFSQFGTILEVNIPRKP-DGKMRGFAFVQFKNLLEAGK 169
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A + M+ + + GR + V +A K S
Sbjct: 170 ALKGMNMKEIKGRTVAVDWAVAKDKYKS 197
>UNIPROTKB|G3N117 [details] [associations]
symbol:LOC508834 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 EMBL:DAAA02019492
Ensembl:ENSBTAT00000063470 OMA:QIMATAV Uniprot:G3N117
Length = 272
Score = 123 (48.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEP-RGFGFIQFVEPDDAAEA 99
PT + V L E IR F FG ++ I L RD P +G +++F P++AA+A
Sbjct: 130 PTKVHVARLTRKVTREHIREIFSTFGRVRKIDLRRDRMRAHPSQGHAYVEFENPEEAAKA 189
Query: 100 KRHMDGQVLLGREL--TVVFA 118
+HMDG + G+++ T V A
Sbjct: 190 LKHMDGGQIDGQQIMATAVLA 210
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V + D + +R F FG I D+ LP D+ + + +GFGFI F P+DAA+A +M
Sbjct: 17 LYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFELPEDAADALDNM 76
Query: 104 DGQVLLGRELTVVFAE 119
+ GR + A+
Sbjct: 77 HESEIFGRVIKCSIAK 92
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 29/75 (38%), Positives = 40/75 (53%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL + NL E + F FG + L +D+ GE RGF FI+F D A A
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDF-RGESRGFAFIEFESADSAGRAML 75
Query: 102 HMDGQVLLGRELTVV 116
HMDG+ L+G+++ V
Sbjct: 76 HMDGR-LIGQKILCV 89
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 123 (48.4 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A + M
Sbjct: 93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 153 GGQWLGGRQIRTNWA--TRKPPA 173
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 123 (48.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A + M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 157 GGQWLGGRQIRTNWA--TRKPPA 177
>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
symbol:zgc:77155 "zgc:77155" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
Length = 258
Score = 96 (38.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 21/79 (26%), Positives = 42/79 (53%)
Query: 46 VRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105
V +L + ++ R F +G ++ +++ R+ P GF F+++ + DA +A + MDG
Sbjct: 18 VGDLGNGAAKGELERAFSYYGPLRSVWVARN-----PPGFAFVEYEDARDAEDAVKGMDG 72
Query: 106 QVLLGRELTVVFAEENRKK 124
+VL G + V + +K
Sbjct: 73 KVLCGARVRVELSNGMSRK 91
Score = 44 (20.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 184 NYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSP---SRSRTP 223
+YS+ RS S SP SP SRSRTP
Sbjct: 162 SYSKRRSRSGSPGRSRSRSPGGRSRSPVRRSKSPVRRSRSRTP 204
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
+ + L V L +++ F FG + + + D +G RGFGF+ F D A A
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 100 KRHMDGQVLLGRELTVVFAEENRKKP 125
+ MDG+ L GR++ V A E P
Sbjct: 93 IKEMDGKELNGRQIRVNLATERSSAP 118
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 117 (46.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
S+ V N+ + PE+I+ F+ G+I + + D ++G+P+GF +++F EP A+A
Sbjct: 74 SIFVGNVDYSASPEEIQAHFQSCGSINRVTILLDKFTGQPKGFAYVEFTEPSLVAQALV- 132
Query: 103 MDGQVLLGRELTV 115
++ V GR + V
Sbjct: 133 LNESVFKGRNIKV 145
>SGD|S000005054 [details] [associations]
symbol:NOP15 "Constituent of 66S pre-ribosomal particles"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=IMP;IPI] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0000915 "cytokinesis, actomyosin contractile
ring assembly" evidence=IMP] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005054 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
GO:GO:0000915 EMBL:Z69382 GO:GO:0042273 GO:GO:0030687 GO:GO:0006364
eggNOG:NOG244773 GeneTree:ENSGT00390000011515 KO:K14838 EMBL:Z71386
EMBL:AY693098 PIR:S63051 RefSeq:NP_014289.1
ProteinModelPortal:P53927 SMR:P53927 DIP:DIP-4741N IntAct:P53927
MINT:MINT-551800 STRING:P53927 PaxDb:P53927 PeptideAtlas:P53927
EnsemblFungi:YNL110C GeneID:855613 KEGG:sce:YNL110C CYGD:YNL110c
HOGENOM:HOG000000855 OMA:QKHEERI OrthoDB:EOG4BK8DG NextBio:979795
Genevestigator:P53927 GermOnline:YNL110C Uniprot:P53927
Length = 220
Score = 119 (46.9 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V L H +++ + F QFG +K++ L R+ +G R +GF++FV +DA A+ M
Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESM 152
Query: 104 DGQVLLGRELTV 115
+ +L+G L V
Sbjct: 153 NNYLLMGHLLQV 164
>UNIPROTKB|E1BV45 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GeneTree:ENSGT00700000104336 EMBL:AADN02049470
IPI:IPI00602926 ProteinModelPortal:E1BV45
Ensembl:ENSGALT00000015109 OMA:LNPPKCT Uniprot:E1BV45
Length = 243
Score = 120 (47.3 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGE-PRGFGFIQFVEPDDAAEA 99
PT + V L + + I F +G IK I +P D + +G+ +++F PDDA +A
Sbjct: 160 PTKVHVGRLTRNVTKDHIMEIFSTYGKIKMIDMPVDRLNPHLSKGYAYVEFENPDDAEKA 219
Query: 100 KRHMDGQVLLGRELT 114
+HMDG + G+E+T
Sbjct: 220 LKHMDGGQIDGQEIT 234
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 128 (50.1 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D L++RNL C +D++ F Q+GA+ ++ +PR G+ RGF F+QF +A +
Sbjct: 111 DKKARLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKP-DGKMRGFAFVQFKNLLEAGK 169
Query: 99 AKRHMDGQVLLGRELTVVFA 118
A + M+ + + GR + V +A
Sbjct: 170 ALKSMNMKEIKGRTVAVDWA 189
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 128 (50.1 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 24/87 (27%), Positives = 51/87 (58%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T++ V+N+ + ++ R FE++G + L RD +G+ RGFGF+ F +DA++A +
Sbjct: 242 TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQ 301
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
++ + G+ L V A++ ++ ++
Sbjct: 302 ELNEKEFHGQNLYVGRAQKKHEREEEL 328
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L + + + F FG I ++ + +D + RGFGFI F P+ A+ A R M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 104 DGQVLLGRELTVVFAEENRK 123
+G+ L GR++ V A ++ +
Sbjct: 68 NGESLDGRQIRVDHAGKSAR 87
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
L + ++VRNL + ++R F FG I ++ L +D +G+ FIQF DDA A
Sbjct: 38 LASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLA 97
Query: 100 KRHMDGQVLLGRELTVVFAEENRK 123
MD ++ GR + + A+ ++
Sbjct: 98 IETMDRRMYNGRMIYIDIAKPGKR 121
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 56 EDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115
ED++R F QFG + D + D SG RGFGF+ F + +A M+G+ L GR +TV
Sbjct: 20 EDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
>TAIR|locus:2080772 [details] [associations]
symbol:EIF3G1 "eukaryotic translation initiation factor
3G1" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS;TAS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006413 "translational
initiation" evidence=TAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0005886 EMBL:CP002686
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003743
GO:GO:0005852 KO:K03248 OMA:SNLSEAM InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 IPI:IPI00938678
RefSeq:NP_001154607.1 UniGene:At.25153 ProteinModelPortal:F4J6A1
SMR:F4J6A1 PRIDE:F4J6A1 EnsemblPlants:AT3G11400.2 GeneID:820313
KEGG:ath:AT3G11400 Uniprot:F4J6A1
Length = 321
Score = 122 (48.0 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
S+ V NL D R D+ F FGA+ +Y+ D +G RGFGF+ FV +DA A
Sbjct: 241 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 300
Query: 103 MDG 105
++G
Sbjct: 301 LNG 303
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 123 (48.4 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A + M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 157 GGQWLGGRQIRTNWA--TRKPPA 177
Score = 97 (39.2 bits), Expect = 0.00028, P = 0.00028
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
++P +L V NL D I + F Q G K+ + D +P + F++F E AA
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFYEHRHAAS 61
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPSD 127
A M+G+ ++G+E+ V +A + D
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKD 90
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 123 (48.4 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A + M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 157 GGQWLGGRQIRTNWA--TRKPPA 177
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 123 (48.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A + M
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 164 GGQWLGGRQIRTNWA--TRKPPA 184
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 123 (48.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A + M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 168 GGQWLGGRQIRTNWA--TRKPPA 188
Score = 96 (38.9 bits), Expect = 0.00038, P = 0.00038
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
++P +L V NL D I + F Q G K+ + D +P + F++F E AA
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFYEHRHAAA 61
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPSD 127
A M+G+ ++G+E+ V +A + D
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKD 90
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A + M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 168 GGQWLGGRQIRTNWA--TRKPPA 188
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A + M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 168 GGQWLGGRQIRTNWA--TRKPPA 188
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A + M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 168 GGQWLGGRQIRTNWA--TRKPPA 188
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + +DIR F FG I D + +D +G+ +G+GF+ F DA A + M
Sbjct: 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 158 GGQWLGGRQIRTNWA--TRKPPA 178
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 123 (48.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V +L + EDI+ F FG I D + +D +G+ +G+GF+ F DA A + M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
GQ L GR++ +A RK P+
Sbjct: 168 GGQWLGGRQIRTNWA--TRKPPA 188
Score = 96 (38.9 bits), Expect = 0.00039, P = 0.00039
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
++P +L V NL D I + F Q G K+ + D +P + F++F E AA
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFYEHRHAAA 61
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPSD 127
A M+G+ ++G+E+ V +A + D
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKD 90
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 121 (47.7 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T L+ +N+ PEDIR FE++G++ DI + + RG FI+ P++AA A +
Sbjct: 94 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSM-HKKERNRGLVFIEMASPEEAATALK 152
Query: 102 HMDGQVLLGRELTVVFAEENRKK 124
++ GR L V +A+ +KK
Sbjct: 153 SLESCEYEGRRLKVDYAKTKKKK 175
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 121 (47.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ V N+ + E I F + G + + L D +G+P+GFGF ++ + D AA A R++
Sbjct: 10 VFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVRNL 69
Query: 104 DGQVLLGRELTVVFAEENRKKPS 126
+ ++GR+L V F+ E KPS
Sbjct: 70 NDTEIMGRKLRVDFSNE---KPS 89
>ASPGD|ASPL0000005578 [details] [associations]
symbol:AN6676 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 EMBL:AACD01000111 eggNOG:NOG297815
OMA:GIHPRLT OrthoDB:EOG4KPXM5 RefSeq:XP_664280.1
ProteinModelPortal:Q5AYF4 STRING:Q5AYF4
EnsemblFungi:CADANIAT00007461 GeneID:2870465 KEGG:ani:AN6676.2
HOGENOM:HOG000180680 Uniprot:Q5AYF4
Length = 307
Score = 121 (47.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
++L V + DI R FE++G ++ + D ++ E RGFGF+ V + A AK
Sbjct: 67 SNLFVTGIHPRLTESDISRLFEKYGDVESCSIMVDPHTKESRGFGFVNMVTAEQADAAKE 126
Query: 102 HMDGQVLLGRELTVVFAEENRKK 124
+ G+V+ GR L++ A +R +
Sbjct: 127 GLQGEVIEGRTLSIEKARRSRPR 149
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
L + V NL ++ ++ R F +G ++ +++ R+ P GF F++F +P DAA+A
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 100 KRHMDGQVLLGRELTVVFAE-ENRKK 124
R +DG+ L G + V + E R +
Sbjct: 63 VRELDGRTLCGCRVRVELSNGEKRSR 88
>UNIPROTKB|K7EP16 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
Ensembl:ENST00000593054 Uniprot:K7EP16
Length = 118
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 48 NLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105
N R D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A + G
Sbjct: 43 NRREDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 100
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 103 (41.3 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEP---DDAAEAK 100
+ V L D +D++ F +FG + D + D +G RGFGFI F EP + E K
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 61
Query: 101 RH-MDGQVL 108
H +DG+++
Sbjct: 62 EHRLDGRLI 70
Score = 34 (17.0 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 182 GQNYSRERSYSRSPAYD 198
G +YS Y P YD
Sbjct: 223 GYDYSGYGYYGYGPGYD 239
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 120 (47.3 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G I D+ + D S RGF F+ F DDA EAK +G L GR + V
Sbjct: 125 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 184
Query: 117 FAEENR 122
F+ R
Sbjct: 185 FSITKR 190
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 120 (47.3 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G I D+ + D S RGF F+ F DDA EAK +G L GR + V
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 117 FAEENR 122
F+ R
Sbjct: 193 FSITKR 198
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 120 (47.3 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G I D+ + D S RGF F+ F DDA EAK +G L GR + V
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 117 FAEENR 122
F+ R
Sbjct: 193 FSITKR 198
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 120 (47.3 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G I D+ + D S RGF F+ F DDA EAK +G L GR + V
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 117 FAEENR 122
F+ R
Sbjct: 193 FSITKR 198
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 120 (47.3 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G I D+ + D S RGF F+ F DDA EAK +G L GR + V
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 117 FAEENR 122
F+ R
Sbjct: 193 FSITKR 198
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 120 (47.3 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116
D+R F ++G I D+ + D S RGF F+ F DDA EAK +G L GR + V
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 117 FAEENR 122
F+ R
Sbjct: 193 FSITKR 198
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 125 (49.1 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 30/87 (34%), Positives = 51/87 (58%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T++ V+NL D ++ F QFG I + + RD SG RGFGF+ F + +DA +A
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVT 249
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
M+G+ + GR L V A++ ++ +++
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQNEL 276
Score = 106 (42.4 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V+NL E +R+ F +G I + + G +GFGF+ F P++A +A
Sbjct: 295 NLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTE 352
Query: 103 MDGQVLLGRELTVVFAE--ENRK 123
M+G+++ + L V A+ E RK
Sbjct: 353 MNGRIVGTKPLYVALAQRKEERK 375
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 120 (47.3 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
DL T L V N+ +++R FE+FG + ++L +D +G +GF FI F + +DA +
Sbjct: 221 DLAT-LRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVK 279
Query: 99 AKRHMDGQVLLGRELTVVFAEE 120
A MDG L V FA++
Sbjct: 280 ACNKMDGWGFKHLILRVEFAKK 301
>DICTYBASE|DDB_G0289053 [details] [associations]
symbol:DDB_G0289053 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0289053 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000129 RefSeq:XP_636445.5
ProteinModelPortal:Q54I26 EnsemblProtists:DDB0233749 GeneID:8626938
KEGG:ddi:DDB_G0289053 OMA:NRYRISS ProtClustDB:CLSZ2846809
Uniprot:Q54I26
Length = 512
Score = 105 (42.0 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 46 VRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105
V L + + ++ FE FG+IKDI D +P G+ + F + D+ +AKR+MDG
Sbjct: 252 VDRLTPNVNKDHLQEIFENFGSIKDIDFLWDKEIDQPMGYALLYFHQKDERDKAKRYMDG 311
Query: 106 QVLLGRELTVVFAEENRKKPS 126
+ G+ +TV + KPS
Sbjct: 312 GRIDGQIVTVRYLNP---KPS 329
Score = 40 (19.1 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
+NYSR R+ SRS
Sbjct: 417 RNYSRSRTRSRS 428
Score = 38 (18.4 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 183 QNYSRERSYSRS 194
++YSR RS SRS
Sbjct: 474 RDYSRSRSRSRS 485
Score = 35 (17.4 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 183 QNYS-RERSYSRS 194
++YS R R+YSRS
Sbjct: 410 RDYSPRRRNYSRS 422
Score = 35 (17.4 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 182 GQNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSR 221
G++ SR RS SRS + S SRSR
Sbjct: 430 GKSGSRSRSRSRSFGRNSNNNKRINKSLSRSRSRSRSRSR 469
Score = 34 (17.0 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 186 SRERSYSRSPAY 197
SR RS SRS Y
Sbjct: 491 SRSRSRSRSRGY 502
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 68 NGKSVDGRQIRV 79
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 68 NGKSVDGRQIRV 79
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 68 NGKSVDGRQIRV 79
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 68 NGKSVDGRQIRV 79
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 68 NGKSVDGRQIRV 79
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 68 NGKSVDGRQIRV 79
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 68 NGKSVDGRQIRV 79
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 68 NGKSVDGRQIRV 79
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 68 NGKSVDGRQIRV 79
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 68 NGKSVDGRQIRV 79
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T L V L + +R FEQFG + + + D + P+GF F+++ ++A +A +
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDM 128
M G+ L GR V+F EE + + SDM
Sbjct: 137 GMHGKFLDGR---VIFVEEAKTR-SDM 159
>ZFIN|ZDB-GENE-040426-1076 [details] [associations]
symbol:eif3g "eukaryotic translation initiation
factor 3, subunit G" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;ISS] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1076 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
HSSP:O75821 GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:AY648835 EMBL:BC049046 EMBL:BC153489 IPI:IPI00500209
RefSeq:NP_957293.1 UniGene:Dr.161 ProteinModelPortal:Q6DRC4
SMR:Q6DRC4 STRING:Q6DRC4 PRIDE:Q6DRC4 Ensembl:ENSDART00000018071
Ensembl:ENSDART00000127487 GeneID:393974 KEGG:dre:393974
InParanoid:Q7ZUH3 OMA:NSEFDAP NextBio:20814945 Bgee:Q6DRC4
Uniprot:Q6DRC4
Length = 293
Score = 119 (46.9 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
++ V NL D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A
Sbjct: 213 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFISFHRREDAARAIAG 272
Query: 103 MDG 105
+ G
Sbjct: 273 VSG 275
>FB|FBgn0016978 [details] [associations]
symbol:snRNP-U1-70K "small ribonucleoprotein particle U1
subunit 70K" species:7227 "Drosophila melanogaster" [GO:0005692
"U11 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0030619 "U1 snRNA
binding" evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0005515
"protein binding" evidence=IPI] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007052 EMBL:AE014134 GO:GO:0022008
GO:GO:0000166 GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0000381 GO:GO:0005685 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:M31162 EMBL:AY061501 EMBL:AY089622 PIR:A36311
RefSeq:NP_477205.1 UniGene:Dm.4728 PDB:2BN5 PDBsum:2BN5
ProteinModelPortal:P17133 SMR:P17133 DIP:DIP-19840N
MINT:MINT-1583111 STRING:P17133 PaxDb:P17133 PRIDE:P17133
EnsemblMetazoa:FBtr0079355 EnsemblMetazoa:FBtr0331374
EnsemblMetazoa:FBtr0331375 GeneID:33982 KEGG:dme:Dmel_CG8749
CTD:33982 FlyBase:FBgn0016978 InParanoid:P17133 OrthoDB:EOG466T39
PhylomeDB:P17133 EvolutionaryTrace:P17133 GenomeRNAi:33982
NextBio:786261 Bgee:P17133 GermOnline:CG8749 Uniprot:P17133
Length = 448
Score = 122 (48.0 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L + + +D +RR FE +G IK I L D SG+P+G+ FI++ D A +H
Sbjct: 103 TLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKH 162
Query: 103 MDGQVLLGRELTV 115
DG+ + + + V
Sbjct: 163 ADGKKIDSKRVLV 175
>UNIPROTKB|Q641B2 [details] [associations]
symbol:eif3g-b "Eukaryotic translation initiation factor 3
subunit G-B" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC082427
RefSeq:NP_001087888.1 UniGene:Xl.3547 ProteinModelPortal:Q641B2
SMR:Q641B2 PRIDE:Q641B2 GeneID:447749 KEGG:xla:447749
Xenbase:XB-GENE-6070476 Uniprot:Q641B2
Length = 308
Score = 119 (46.9 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
++ V NL D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A
Sbjct: 228 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 287
Query: 103 MDG 105
+ G
Sbjct: 288 VSG 290
>UNIPROTKB|Q6DJI8 [details] [associations]
symbol:eif3g-a "Eukaryotic translation initiation factor 3
subunit G-A" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 EMBL:BC075190 RefSeq:NP_001086477.1
UniGene:Xl.48772 ProteinModelPortal:Q6DJI8 SMR:Q6DJI8 GeneID:446311
KEGG:xla:446311 CTD:446311 Xenbase:XB-GENE-6251503
HOVERGEN:HBG026850 Uniprot:Q6DJI8
Length = 308
Score = 119 (46.9 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
++ V NL D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A
Sbjct: 228 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 287
Query: 103 MDG 105
+ G
Sbjct: 288 VSG 290
>UNIPROTKB|F1LZA3 [details] [associations]
symbol:F1LZA3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00776911
Ensembl:ENSRNOT00000038472 Uniprot:F1LZA3
Length = 262
Score = 101 (40.6 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T + V NL ++ R +G+++ +++ R+ P GF F++F +P DA + R
Sbjct: 14 TKVYVGNLGTGAGKGELERALSYYGSLRTVWIARN-----PPGFAFVEFEDPRDAEDLVR 68
Query: 102 HMDGQVLLGR----ELTVVFAEENR 122
+DG+V+ G EL+ V +R
Sbjct: 69 GLDGKVICGSGVRVELSTVMPRRSR 93
Score = 34 (17.0 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 182 GQNYSRERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRTP 223
G Y + R SRS Y SP RSR+P
Sbjct: 144 GSRYFQSRPRSRSK-YRSISLPRSSRSKSRSP--SPKRSRSP 182
>UNIPROTKB|F1P6U2 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005689 GeneTree:ENSGT00530000063750 CTD:11066 KO:K13155
OMA:QHEVFVD EMBL:AAEX03014640 RefSeq:XP_534648.2
ProteinModelPortal:F1P6U2 Ensembl:ENSCAFT00000011983 GeneID:477450
KEGG:cfa:477450 Uniprot:F1P6U2
Length = 246
Score = 99 (39.9 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V L + E ++ F ++G I+ + L RD +G +G+ FI++ E +A R
Sbjct: 52 TLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGLSKGYAFIEYKEERSLIKAYRD 111
Query: 103 MDGQVLLGRELTVVFAEENRKK 124
DG V+ E+ V + E K
Sbjct: 112 ADGLVIDQHEIFVDYELERTLK 133
Score = 35 (17.4 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 182 GQNYSRERSYSRSPAYD 198
G+ RERS SR +D
Sbjct: 179 GKREKRERSRSRERHWD 195
>UNIPROTKB|Q28CY2 [details] [associations]
symbol:eif3g "Eukaryotic translation initiation factor 3
subunit G" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
CTD:446311 HOVERGEN:HBG026850 HOGENOM:HOG000239560 EMBL:CR855811
EMBL:BC158150 RefSeq:NP_001016749.1 UniGene:Str.41964
ProteinModelPortal:Q28CY2 SMR:Q28CY2 STRING:Q28CY2
Ensembl:ENSXETT00000047701 GeneID:549503 KEGG:xtr:549503
Xenbase:XB-GENE-6070198 Bgee:Q28CY2 Uniprot:Q28CY2
Length = 310
Score = 119 (46.9 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
++ V NL D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A
Sbjct: 230 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 289
Query: 103 MDG 105
+ G
Sbjct: 290 VSG 292
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 96 (38.9 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 46 VRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105
V NL D R +++ F ++G IK Y+ D SG F F++F + DA +A R DG
Sbjct: 13 VGNLPGDVREKEVEDIFHKYGRIK--YV--DIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
Query: 106 QVLLGRELTVVF 117
GR + V F
Sbjct: 69 YEFDGRRIRVEF 80
Score = 39 (18.8 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 187 RERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
R+RS SRSP + S SRSR+
Sbjct: 209 RDRSRSRSPRAERRASPKYSPRRSRSRSRSRSRSRS 244
Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 186 SRERSYSRSPA 196
SR RS SRSP+
Sbjct: 242 SRSRSASRSPS 252
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 96 (38.9 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 46 VRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105
V NL D R +++ F ++G IK Y+ D SG F F++F + DA +A R DG
Sbjct: 13 VGNLPGDVREKEVEDIFHKYGRIK--YV--DIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
Query: 106 QVLLGRELTVVF 117
GR + V F
Sbjct: 69 YEFDGRRIRVEF 80
Score = 39 (18.8 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 187 RERSYSRSPAYDXXXXXXXXXXXXXXXXWSPSRSRT 222
R+RS SRSP + S SRSR+
Sbjct: 209 RDRSRSRSPRAERRASPKYSPRRSRSRSRSRSRSRS 244
Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 186 SRERSYSRSPA 196
SR RS SRSP+
Sbjct: 242 SRSRSASRSPS 252
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 113 (44.8 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D T+L+V L + E+++ F G I+ L RD +G+ G+GF+ +++P DA +
Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 99 AKRHMDGQVLLGRELTVVFA 118
A ++G L + + V +A
Sbjct: 96 AINTLNGLRLQTKTIKVSYA 115
>UNIPROTKB|F2Z4J5 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 IPI:IPI00700187 UniGene:Bt.49351 OMA:NSEFDAP
EMBL:DAAA02019449 ProteinModelPortal:F2Z4J5 SMR:F2Z4J5 PRIDE:F2Z4J5
Ensembl:ENSBTAT00000003545 Uniprot:F2Z4J5
Length = 320
Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
++ V NL D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A
Sbjct: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299
Query: 103 MDG 105
+ G
Sbjct: 300 VSG 302
>UNIPROTKB|Q3ZC12 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0006413 "translational
initiation" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=ISS] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
KO:K03248 HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC102984 IPI:IPI00700187
RefSeq:NP_001073091.1 UniGene:Bt.49351 ProteinModelPortal:Q3ZC12
SMR:Q3ZC12 STRING:Q3ZC12 PRIDE:Q3ZC12 GeneID:615695 KEGG:bta:615695
CTD:8666 HOGENOM:HOG000239560 InParanoid:Q3ZC12 OrthoDB:EOG4Z0B62
NextBio:20899745 Uniprot:Q3ZC12
Length = 320
Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
++ V NL D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A
Sbjct: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299
Query: 103 MDG 105
+ G
Sbjct: 300 VSG 302
>UNIPROTKB|E2RGG6 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9615 "Canis lupus familiaris" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 KO:K03248 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 CTD:8666 OMA:NSEFDAP
EMBL:AAEX03012427 RefSeq:XP_854113.1 ProteinModelPortal:E2RGG6
Ensembl:ENSCAFT00000028426 GeneID:612971 KEGG:cfa:612971
NextBio:20898427 Uniprot:E2RGG6
Length = 320
Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
++ V NL D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A
Sbjct: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299
Query: 103 MDG 105
+ G
Sbjct: 300 VSG 302
>UNIPROTKB|O75821 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IC;IDA;TAS]
[GO:0003743 "translation initiation factor activity"
evidence=IC;IDA] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] Reactome:REACT_71 Reactome:REACT_17015
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 GO:GO:0048471 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724
GO:GO:0005852 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850
Reactome:REACT_1762 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP EMBL:U96074 EMBL:AF020833 EMBL:AF092453 EMBL:AF094850
EMBL:BT006889 EMBL:BC000733 EMBL:BC008469 IPI:IPI00290460
RefSeq:NP_003746.2 UniGene:Hs.529059 PDB:2CQ0 PDBsum:2CQ0
ProteinModelPortal:O75821 SMR:O75821 DIP:DIP-31115N IntAct:O75821
MINT:MINT-3001737 STRING:O75821 PhosphoSite:O75821 PaxDb:O75821
PeptideAtlas:O75821 PRIDE:O75821 DNASU:8666 Ensembl:ENST00000253108
GeneID:8666 KEGG:hsa:8666 UCSC:uc002mnd.3 GeneCards:GC19M010225
HGNC:HGNC:3274 HPA:HPA041997 MIM:603913 neXtProt:NX_O75821
PharmGKB:PA162384827 InParanoid:O75821 PhylomeDB:O75821
ChiTaRS:EIF3G EvolutionaryTrace:O75821 GenomeRNAi:8666
NextBio:32507 Bgee:O75821 CleanEx:HS_EIF3G Genevestigator:O75821
GermOnline:ENSG00000130811 Uniprot:O75821
Length = 320
Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
++ V NL D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A
Sbjct: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299
Query: 103 MDG 105
+ G
Sbjct: 300 VSG 302
>MGI|MGI:1858258 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISO;IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=ISO;IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1858258 GO:GO:0005634 GO:GO:0048471
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP ChiTaRS:EIF3G EMBL:U70733 EMBL:AF108214 EMBL:BC008511
IPI:IPI00622371 RefSeq:NP_058572.2 UniGene:Mm.427309
ProteinModelPortal:Q9Z1D1 SMR:Q9Z1D1 IntAct:Q9Z1D1
MINT:MINT-1572167 STRING:Q9Z1D1 PhosphoSite:Q9Z1D1
REPRODUCTION-2DPAGE:Q9Z1D1 PaxDb:Q9Z1D1 PRIDE:Q9Z1D1
Ensembl:ENSMUST00000004206 GeneID:53356 KEGG:mmu:53356
InParanoid:Q9Z1D1 NextBio:310169 Bgee:Q9Z1D1 Genevestigator:Q9Z1D1
GermOnline:ENSMUSG00000070319 Uniprot:Q9Z1D1
Length = 320
Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
++ V NL D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A
Sbjct: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299
Query: 103 MDG 105
+ G
Sbjct: 300 VSG 302
>RGD|1307191 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=IEA;ISO;ISS] [GO:0006413
"translational initiation" evidence=ISO;ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
++ V NL D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A
Sbjct: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299
Query: 103 MDG 105
+ G
Sbjct: 300 VSG 302
>UNIPROTKB|Q5RK09 [details] [associations]
symbol:Eif3g "Eukaryotic translation initiation factor 3
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
++ V NL D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A
Sbjct: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299
Query: 103 MDG 105
+ G
Sbjct: 300 VSG 302
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 114 (45.2 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L V L D + + + F ++G I ++ + +D + RGFGF+ F DDA +A M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 68 NGKSVDGRQIRV 79
>UNIPROTKB|F1S3I3 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9823 "Sus scrofa" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 OMA:NSEFDAP EMBL:CU462940 Ensembl:ENSSSCT00000014925
Uniprot:F1S3I3
Length = 322
Score = 119 (46.9 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
++ V NL D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A
Sbjct: 242 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 301
Query: 103 MDG 105
+ G
Sbjct: 302 VSG 304
>UNIPROTKB|K7ENA8 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC020931 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HGNC:HGNC:3274
Ensembl:ENST00000589454 Uniprot:K7ENA8
Length = 289
Score = 118 (46.6 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
++ V NL D R D++ F FG+I IYL +D +G+ +GF FI F +DAA A
Sbjct: 232 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA 288
>WB|WBGene00000889 [details] [associations]
symbol:cyn-13 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IGI;IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 119 (46.9 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V D + + F FG + I +P DY SG+ RGFGF++F +DAA A +
Sbjct: 12 TLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDN 71
Query: 103 MDGQVLLGRELTVVFA 118
M+ L G+ + V FA
Sbjct: 72 MNESELFGKTIRVNFA 87
>UNIPROTKB|Q9U2S6 [details] [associations]
symbol:cyn-13 "Protein CYN-13, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 119 (46.9 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V D + + F FG + I +P DY SG+ RGFGF++F +DAA A +
Sbjct: 12 TLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDN 71
Query: 103 MDGQVLLGRELTVVFA 118
M+ L G+ + V FA
Sbjct: 72 MNESELFGKTIRVNFA 87
WARNING: HSPs involving 643 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.138 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 253 132 0.00091 102 3 11 22 0.44 31
30 0.43 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 893
No. of states in DFA: 552 (59 KB)
Total size of DFA: 128 KB (2082 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.31u 0.12s 11.43t Elapsed: 00:00:01
Total cpu time: 11.33u 0.12s 11.45t Elapsed: 00:00:01
Start: Fri May 10 07:40:10 2013 End: Fri May 10 07:40:11 2013
WARNINGS ISSUED: 2