BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025401
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 229 bits (584), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 145/219 (66%), Positives = 164/219 (74%), Gaps = 10/219 (4%)
Query: 1 MRGRSYTPSPPPRGSGGGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDIRR 60
MRGRSYTPSPP GYGRRGRSPSPRGRYGG R RDLPTSLLVRNLRHDCR ED+R+
Sbjct: 1 MRGRSYTPSPP-----RGYGRRGRSPSPRGRYGG-RSRDLPTSLLVRNLRHDCRQEDLRK 54
Query: 61 PFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120
FEQFG +KDIYLPRDYY+G+PRGFGF+QF++P DAA+AK HMDG +LLGRELTVVFAEE
Sbjct: 55 SFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEE 114
Query: 121 NRKKPSDMRARERGRGRFRRRSPPPRYSRSPPPRYARSPSYGR----DYSPPPRRRNYSR 176
NRKKP++MRARERG GRFR R P S R DY PP RR++ R
Sbjct: 115 NRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPR 174
Query: 177 SVSPHGQNYSRERSYSRSPAYDGPRGRSRSPHRGQRQSW 215
S+SP + Y RSYSRSPA DG RGRS +P RG+ +S
Sbjct: 175 SISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSL 213
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 64/91 (70%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL VRN+ D R ED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDMRARE 132
++D + + GR++ + FA+ +RK P+ M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 64/91 (70%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL VRN+ D R ED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDMRARE 132
++D + + GR++ + FA+ +RK P+ M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 64/92 (69%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL +RN+ RPED+RR F ++G I D+Y+P D+Y+ PRGF ++QF + DA +A
Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALY 69
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDMRARER 133
+++ + + GR++ + FA+ +RK P M+++ER
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFA 118
MDG VL GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFA 118
MDG VL GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis
elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL + NL + P D+RR FE++G I D+++PRD YS + +GFGF++F E DA A
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSD 127
DG+++ GREL V A+ +R PSD
Sbjct: 79 RTDGKLVDGRELRVTLAKYDR--PSD 102
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2
SV=1
Length = 221
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFA 118
MDG VL GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFA 118
MDG VL GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFA 118
MDG VL GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFA 118
MDG VL GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2
SV=3
Length = 221
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
TSL V NL + P+ +RR FE++G + D+Y+PRD Y+ E RGF F++F + DA +A
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 102 HMDGQVLLGRELTVVFA 118
MDG VL GREL V A
Sbjct: 74 AMDGAVLDGRELRVQMA 90
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
+L V NL + P+ +RR FE++G + D+Y+PR+ ++ PRGF F++F + DA +A+
Sbjct: 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73
Query: 102 HMDGQVLLGRELTVVFAEENRK 123
MDG L GREL V A R+
Sbjct: 74 AMDGAELDGRELRVQVARYGRR 95
>sp|P78795|EIF3G_SCHPO Eukaryotic translation initiation factor 3 subunit G
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif35 PE=1 SV=2
Length = 282
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 8 PSPPPRGSGGGYGRRGRSPSPRGRYGGGRG---------RDLPTSLLVRNLRHDCRPEDI 58
SP + G G +GR +P R G GR RD +L V NL D R E++
Sbjct: 159 ASPVSSRASGALGEKGRYIAPHLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEEL 218
Query: 59 RRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105
R F +FG I+ +YL +D +G +GF F+ + + D A +A+ +DG
Sbjct: 219 RDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T++ V+N+ D E+ R FE+FG I L RD SG+ RGFGF+ F D+AA A
Sbjct: 236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVE 295
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDMR 129
++ + G++L V A++ ++ ++R
Sbjct: 296 ALNDKDFKGQKLYVGRAQKKHEREEELR 323
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
++ ++NL + + F FG I + +D + G +G+GF+ + + A A +H
Sbjct: 144 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKH 202
Query: 103 MDGQVLLGRELTV---VFAEENRKKPSDMRAR 131
++G +L +++ V + ++ + K +M+A
Sbjct: 203 VNGMLLNDKKVFVGHHIAKKDRQSKFEEMKAN 234
Score = 38.1 bits (87), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 80 GEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEENRKKPSDMRARERGRGRFR 139
G+ +GFGF+ F PD+A++A M+ +++ G+ L V A+ + S + A + R R
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASIQARNTIR 489
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 62.0 bits (149), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 52/79 (65%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L +RN+ ++ ED R F Q+GA++++++ D +G+ +GF ++QF++ +DA A R +
Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371
Query: 104 DGQVLLGRELTVVFAEENR 122
D Q+ GR L ++ A++ +
Sbjct: 372 DKQIFQGRLLHILPADKKK 390
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 48 NLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQV 107
NL + +D+ F FG +K + +P+ + RGF F++F +A A ++G
Sbjct: 723 NLPFEATRKDLLELFGAFGQLKSVRVPKKF-DQSARGFAFVEFNLMKEAETAMSQLEGVH 781
Query: 108 LLGRELTVVFAEEN 121
LLGR L + +AE++
Sbjct: 782 LLGRRLVMQYAEQD 795
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 62.0 bits (149), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
+ VRNL + + ED+ + F +FG I +I++P DY S + +G FI ++ P++A +A M
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 104 DGQVLLGRELTVV 116
DG+V GR + V+
Sbjct: 423 DGKVFQGRLIHVL 435
Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 34 GGRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEP 93
GG+ + ++++NL + ++IR+ F +G I+ + +P+ G RGFGF++F+
Sbjct: 787 GGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGH-RGFGFVEFLTE 845
Query: 94 DDAAEAKRHMDGQVLLGRELTVVFAEENR 122
++A A + GR L + +AE+++
Sbjct: 846 EEAKNAMEALGNSHFYGRHLVLQYAEQDK 874
Score = 32.0 bits (71), Expect = 3.9, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 74 PRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEENRKKPSDMRAR 131
P++ P GFGFI+F A E + ++G + G E+++ +++N ++ R
Sbjct: 715 PKNPSERLPCGFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKR 772
>sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1
Length = 303
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 5 SYTPSPPPRGSGGGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDIRRPFEQ 64
SY P G+GG G R G+YG RD +L V N+ +++R FE+
Sbjct: 194 SYVPPAMRAGAGGAQGER-----MGGKYGE---RDDLATLRVTNVSEMAEEQELRDMFER 245
Query: 65 FGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105
FG + ++L +D +G +GF FI + + DDA +A MDG
Sbjct: 246 FGRVTRVFLAKDRDTGMAKGFAFISYADRDDAVKACNKMDG 286
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L V L + ++ F ++G I ++L +D + + RGF F+ F P DA
Sbjct: 5 DRPEKLFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKA 64
Query: 99 AKRHMDGQVLLGRELTVV 116
A R M+G+ L G+ + V
Sbjct: 65 AARDMNGKYLDGKAIMVA 82
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I +I L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|A6SGN8|EIF3G_BOTFB Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia
fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1
Length = 288
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 31 RYGGGR-GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQ 89
R GGG+ RD +L V N+ +++R FE+FG + ++L +D +G +GF FI
Sbjct: 196 RMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFIS 255
Query: 90 FVEPDDAAEAKRHMDG 105
F E DAA+A MDG
Sbjct: 256 FQERSDAAKACEKMDG 271
>sp|A7EWN6|EIF3G_SCLS1 Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35
PE=3 SV=1
Length = 288
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 31 RYGGGR-GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQ 89
R GGG+ RD +L V N+ +++R FE+FG + ++L +D +G +GF FI
Sbjct: 196 RMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFIS 255
Query: 90 FVEPDDAAEAKRHMDG 105
F E DAA+A MDG
Sbjct: 256 FQERSDAAKACEKMDG 271
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 57.8 bits (138), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 50/87 (57%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L VRNL + ED+ + F ++G + +++ P D + +P+GF FI F+ P+ A +A +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 104 DGQVLLGRELTVVFAEENRKKPSDMRA 130
DGQV GR L V+ + ++ D A
Sbjct: 464 DGQVFQGRMLHVLPSTIKKEASEDASA 490
Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
+ L+V+NL + + E R+ F FG + D L + G+ R FGFI F ++A +A++
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSL-KFTKDGKFRKFGFIGFKSEEEAQKAQK 60
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDMRARERGRGRFRRRSPPPRYSRSP 151
H + + +TV F ++ P+ RA + + + PP+ S +P
Sbjct: 61 HFNKSFIDTSRITVEFC-KSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTP 109
Score = 41.2 bits (95), Expect = 0.006, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY-SGEPRGFGFIQFVEPDDAAEAK 100
+ +LVRN+ +IR F FG +K + LP+ +G RGFGF+ F+ DA A
Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 101 RHM-DGQVLLGRELTVVFAE 119
+ L GR L + +A+
Sbjct: 892 NALCHSTHLYGRRLVLEWAD 911
Score = 40.4 bits (93), Expect = 0.012, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGE---PRGFGFIQFVEPDDAAEA 99
+L ++NL D E ++ F + G +K + + GFGF+++ +P+ A +A
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 100 KRHMDGQVLLGRELTVVFAEENRKKPSDMRARER 133
+ + G V+ G +L V +E KP+ AR++
Sbjct: 791 LKQLQGHVVDGHKLEVRISER-ATKPAVTLARKK 823
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L + L D E + + F ++G I ++ + +D + RGFGF+ F PDDA +A M
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 104 DGQVLLGRELTV 115
+G+ + GR++ V
Sbjct: 67 NGKAVDGRQIRV 78
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I +I L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
R M+G+ L G+ + V E KPS
Sbjct: 65 VARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F +FG I ++ L +D + + RGF F+ + P DA +
Sbjct: 5 DRPGKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEE 120
A R M+G+ L G+ + V A +
Sbjct: 65 AAREMNGKPLDGKPIKVEQATK 86
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1
Length = 828
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 47/73 (64%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L +RNL + + ED R+ F Q+G +++++LP + +G+ +GF +QF +P++A A
Sbjct: 303 LFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQ 362
Query: 104 DGQVLLGRELTVV 116
DG++ GR L ++
Sbjct: 363 DGKIFQGRLLHIL 375
Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAA 97
+ + + +L++NL + +D+++ F FG++K + +P+ + S E RGF F ++V +A
Sbjct: 699 KAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNS-ESRGFAFAEYVSAKEAE 757
Query: 98 EAKRHMDGQVLLGRELTVVFAEEN 121
A + G LLGR L + +A+ +
Sbjct: 758 HAMSALQGTHLLGRRLVLQYAQAD 781
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R M+G+ L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + ++ F + G I ++ L +D S + RGF FI F P DA
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKN 63
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A + M+G+ L G+ + V E KKPS
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPS 87
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + ++ F + G I ++ L +D S + RGF FI F P DA
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKN 63
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A + M+G+ L G+ + V E KKPS
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPS 87
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + ++ F + G I ++ L +D S + RGF FI F P DA
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKN 63
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A + M+G+ L G+ + V E KKPS
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPS 87
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + ++ F + G I ++ L +D S + RGF FI F P DA
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKN 63
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A + M+G+ L G+ + V E KKPS
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPS 87
>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=mrd1 PE=3 SV=1
Length = 825
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEA 99
L + L VRNL +D D+ F +FG I++I++ D S +GF ++Q++EPD A +A
Sbjct: 299 LSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQA 358
Query: 100 KRHMDGQVLLGRELTVVFAEENR 122
+ +DG+ GR + ++ A +
Sbjct: 359 YKELDGKHFQGRLMHILPATAKK 381
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T ++++NL +D+R F +G ++ + +P+ + RGFGF FV +A A
Sbjct: 702 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKF-DRSARGFGFADFVSAREAENAMD 760
Query: 102 HMDGQVLLGRELTVVFAEENRKKP 125
+ LLGR L + FA E P
Sbjct: 761 ALKNTHLLGRRLVLEFANEEAVDP 784
Score = 33.1 bits (74), Expect = 2.1, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRG-FGFIQFVEPDDAAEA 99
T++LV+N + + +D+R+ FE +G I + +P P G ++F PD+A +A
Sbjct: 484 TAILVKNFSYGVKVDDLRKLFEPYGQITRLLMP-------PSGTIAIVEFARPDEAQKA 535
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102
+L V L ++ I+R FE +G IK ++L D + +P+G+ FI+++ D A +
Sbjct: 139 TLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQ 198
Query: 103 MDGQVLLGRELTV 115
DGQ + GR + V
Sbjct: 199 ADGQKIDGRRVLV 211
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 56.2 bits (134), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L VRNL + ED+ + F +G + +++ P D + +P+GF F+ F+ P+ A +A +
Sbjct: 402 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 461
Query: 104 DGQVLLGRELTVV 116
DGQV GR L V+
Sbjct: 462 DGQVFQGRMLHVL 474
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY-SGEPRGFGFIQFVEPDDAAEAK 100
+ +LVRN+ +IR F FG +K + LP+ +G RGFGF+ F+ DA +A
Sbjct: 824 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883
Query: 101 RHM-DGQVLLGRELTVVFAEENRKKPSDMRARERGRGRFRRRSPPPRYSRS 150
+ L GR L + +A+ S++ + R R PP+ RS
Sbjct: 884 NALCHSTHLYGRRLVLEWAD------SEVTVQTLRRKTARHFQEPPKKKRS 928
Score = 37.0 bits (84), Expect = 0.14, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGE---PRGFGFIQFVEPDDAAEA 99
+L ++NL E ++ F + GAIK + + GFGF+++ +P+ A +A
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782
Query: 100 KRHMDGQVLLGRELTVVFAEENRK 123
+ + G + G +L V +E K
Sbjct: 783 LKQLQGHTVDGHKLEVRISERATK 806
Score = 34.3 bits (77), Expect = 0.84, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
+ L+V+NL + + E R+ F FG + D L + G+ R FGFI F ++A A
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSL-KFTKDGKFRKFGFIGFKSEEEAQAALN 60
Query: 102 HMDGQVLLGRELTVVFAEENRKKPSDMRARERGRGRFRRRSPPPRYSRSPPP 153
H + +TV F ++ PS RA + ++ S P + S+ P
Sbjct: 61 HFHRSFIDTTRITVEFC-KSFGDPSKPRAWSK---HAQKSSQPKQPSQDSVP 108
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I +I L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
R M+G+ L G+ + V E KPS
Sbjct: 65 VARDMNGKSLDGKAIKV----EQATKPS 88
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
+L ++N+ + +R F QFG I + +D + +GFGF+ + PD+A A
Sbjct: 284 VNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVT 343
Query: 102 HMDGQVLLGRELTVVFAE--ENRKKPSDMRARERGRGRFRRRSPP 144
M+G+++ + L V A+ + R+ +M+ +++ + R++ PP
Sbjct: 344 EMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKTGIRQQMPP 388
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T++ +NL D P+ ++ +Q+G I +I + D G+ +GFGF F + A
Sbjct: 188 TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVE 246
Query: 102 HMDGQVLLGR 111
+ +G++ G+
Sbjct: 247 NENGKIFHGK 256
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + ++ F + G I ++ L +D S + RGF FI F P DA
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKN 63
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A + M+G L G+ + V E KKPS
Sbjct: 64 AAKDMNGTSLHGKAIKV----EQAKKPS 87
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G + ++ L +D + + RGF F+ F P DA +
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPS 126
A R ++G+ L G+ + V E KPS
Sbjct: 65 AARELNGKALDGKPIKV----EQATKPS 88
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P L + L + + + F ++G I ++ L +D + + RGF FI F P DA
Sbjct: 5 DRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKA 64
Query: 99 AKRHMDGQVLLGRELTVVFA 118
A R M+G+ L G+ + V A
Sbjct: 65 AVRDMNGKSLDGKAIKVAQA 84
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 55.5 bits (132), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L +RNL + C +D++ F FG ++ +++P D + P+GF +I F + DDA A +
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 104 DGQVLLGRELTVVFAE 119
D + GR L V+ A+
Sbjct: 385 DAKPFQGRLLHVLPAK 400
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 21 RRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSG 80
R+ S P+G T +L++NL + +D++ +G ++ + +P+ +
Sbjct: 711 RKQDSSKPKG-----------TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKF-DR 758
Query: 81 EPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118
RGF F +FV +AA A R + LLGR L + +A
Sbjct: 759 SARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYA 796
Score = 32.3 bits (72), Expect = 3.7, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFG--------AIKDIYLPRDYYSGEPRGFGFIQFVEPD 94
++ V+NL + E+ ++ F+ A D P Y S GFGF++F +
Sbjct: 620 TIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLS---MGFGFVEFKDKA 676
Query: 95 DAAEAKRHMDGQVLLGRELTVVFAEENRKKPSDMRARERGR 135
A A M+G VL G +L + + + +++R ++ +
Sbjct: 677 SAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSK 717
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98
D P + + L R + ++ F +FG + + L RD + + RGF F+ F P DA
Sbjct: 5 DQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKN 64
Query: 99 AKRHMDGQVLLGRELTVVFAEENRKKPSDMRARERGRGRFRRRSPPPRYSRS 150
A + M+G +L G+ + V A ++PS + + + R PP +SR+
Sbjct: 65 AVKEMNGVILDGKRIKVKQA----RRPSSLESGSKKR--------PPSFSRT 104
>sp|Q28E41|RNPS1_XENTR RNA-binding protein with serine-rich domain 1 OS=Xenopus tropicalis
GN=rnps1 PE=2 SV=1
Length = 309
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
Query: 21 RRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRD-YYS 79
R+ RSPSPR PT + + L + + I F +G IK I +P D Y+
Sbjct: 154 RKRRSPSPR-----------PTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHP 202
Query: 80 GEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115
+G+ +++F P++A +A +HMDG + G+E+T
Sbjct: 203 HLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITA 238
>sp|Q3KPW1|RNP1B_XENLA RNA-binding protein with serine-rich domain 1-B OS=Xenopus laevis
GN=rnps1-b PE=2 SV=1
Length = 283
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
Query: 21 RRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRD-YYS 79
R+ RSPSPR PT + + L + + I F +G IK I +P D Y+
Sbjct: 128 RKRRSPSPR-----------PTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHP 176
Query: 80 GEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115
+G+ +++F P++A +A +HMDG + G+E+T
Sbjct: 177 HLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITA 212
>sp|Q5BGA9|MRD1_EMENI Multiple RNA-binding domain-containing protein 1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=mrd1 PE=3 SV=1
Length = 819
Score = 54.7 bits (130), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103
L VRNL ++ + ++ F FG I++I++ D +GF ++Q+ +PD A EA R++
Sbjct: 297 LFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNL 356
Query: 104 DGQVLLGRELTVVFAEENR 122
DG++ GR L ++ A + +
Sbjct: 357 DGKIFQGRLLHILPASQKK 375
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101
T ++++NL +D+R F +G ++ + +P+ + RGFGF FV +A A
Sbjct: 697 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKF-DRSARGFGFADFVSAREAENAMD 755
Query: 102 HMDGQVLLGRELTVVFA 118
+ LLGR L + FA
Sbjct: 756 ALKNTHLLGRRLVLEFA 772
Score = 33.5 bits (75), Expect = 1.5, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRG-FGFIQFVEPDDAAEAKR 101
++LV+N + + ED+R+ FE FG I + +P P G + F PD+A +A +
Sbjct: 479 AILVKNFSYGTKTEDLRKLFEPFGQITRLLMP-------PSGTIAIVAFARPDEAQKAFK 531
Query: 102 HM 103
+
Sbjct: 532 SL 533
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,994,826
Number of Sequences: 539616
Number of extensions: 5705938
Number of successful extensions: 39517
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 887
Number of HSP's that attempted gapping in prelim test: 25264
Number of HSP's gapped (non-prelim): 8118
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)