Query 025401
Match_columns 253
No_of_seqs 367 out of 2553
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:25:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4207 Predicted splicing fac 99.9 1.4E-22 3.1E-27 162.2 18.3 85 39-123 11-95 (256)
2 KOG0107 Alternative splicing f 99.9 8.1E-22 1.8E-26 154.1 15.8 82 37-123 6-87 (195)
3 PLN03134 glycine-rich RNA-bind 99.9 1.6E-20 3.4E-25 147.5 13.7 90 35-124 28-117 (144)
4 KOG0113 U1 small nuclear ribon 99.8 1.4E-18 3E-23 146.2 17.0 85 39-123 99-183 (335)
5 TIGR01659 sex-lethal sex-letha 99.8 2.1E-18 4.5E-23 153.6 13.7 86 36-121 102-187 (346)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 7.4E-18 1.6E-22 150.8 12.1 84 39-122 267-350 (352)
7 KOG0122 Translation initiation 99.8 8E-18 1.7E-22 138.2 11.1 87 35-121 183-269 (270)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.3E-17 2.7E-22 149.3 11.2 83 40-122 2-84 (352)
9 PF00076 RRM_1: RNA recognitio 99.7 2.1E-17 4.6E-22 113.0 9.1 70 44-114 1-70 (70)
10 TIGR01659 sex-lethal sex-letha 99.7 9.9E-17 2.1E-21 142.8 12.2 86 39-124 191-278 (346)
11 KOG0121 Nuclear cap-binding pr 99.7 3E-17 6.5E-22 122.3 7.1 81 39-119 34-114 (153)
12 KOG0130 RNA-binding protein RB 99.7 8.1E-17 1.8E-21 121.1 7.4 84 40-123 71-154 (170)
13 PF14259 RRM_6: RNA recognitio 99.7 7.1E-16 1.5E-20 106.0 9.3 70 44-114 1-70 (70)
14 KOG0117 Heterogeneous nuclear 99.7 6.3E-16 1.4E-20 136.5 10.6 88 33-120 75-163 (506)
15 KOG0149 Predicted RNA-binding 99.6 2.5E-16 5.5E-21 128.9 7.1 82 38-120 9-90 (247)
16 KOG0125 Ataxin 2-binding prote 99.6 3.9E-16 8.4E-21 133.1 8.3 85 35-121 90-174 (376)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.2E-15 2.6E-20 143.0 12.0 85 39-123 293-377 (509)
18 PLN03120 nucleic acid binding 99.6 1.4E-15 3E-20 128.2 11.2 78 41-122 4-81 (260)
19 TIGR01622 SF-CC1 splicing fact 99.6 2E-15 4.3E-20 139.8 11.7 81 41-121 186-266 (457)
20 TIGR01648 hnRNP-R-Q heterogene 99.6 2.4E-15 5.1E-20 141.0 11.0 82 36-118 53-135 (578)
21 TIGR01645 half-pint poly-U bin 99.6 2.9E-15 6.2E-20 140.8 11.4 83 39-121 202-284 (612)
22 KOG0131 Splicing factor 3b, su 99.6 1E-15 2.2E-20 120.7 6.8 84 36-119 4-87 (203)
23 TIGR01645 half-pint poly-U bin 99.6 2.2E-15 4.9E-20 141.5 10.2 81 39-119 105-185 (612)
24 KOG0105 Alternative splicing f 99.6 2.9E-15 6.4E-20 118.5 9.3 80 40-122 5-84 (241)
25 KOG0126 Predicted RNA-binding 99.6 9.7E-17 2.1E-21 126.4 0.8 83 40-122 34-116 (219)
26 TIGR01622 SF-CC1 splicing fact 99.6 9E-15 2E-19 135.4 14.0 82 39-121 87-168 (457)
27 KOG0111 Cyclophilin-type pepti 99.6 6.1E-16 1.3E-20 125.3 5.3 89 38-126 7-95 (298)
28 smart00362 RRM_2 RNA recogniti 99.6 6.3E-15 1.4E-19 100.1 9.5 72 43-116 1-72 (72)
29 PLN03121 nucleic acid binding 99.6 7.8E-15 1.7E-19 121.9 11.3 79 39-121 3-81 (243)
30 PLN03213 repressor of silencin 99.6 4.2E-15 9.2E-20 132.7 9.7 78 39-120 8-87 (759)
31 TIGR01628 PABP-1234 polyadenyl 99.6 6.7E-15 1.5E-19 139.7 10.8 79 42-120 1-79 (562)
32 KOG0148 Apoptosis-promoting RN 99.6 8.1E-15 1.8E-19 122.1 9.4 81 37-123 160-240 (321)
33 KOG0114 Predicted RNA-binding 99.6 1.7E-14 3.6E-19 103.9 8.8 83 36-121 13-95 (124)
34 TIGR01628 PABP-1234 polyadenyl 99.6 1.6E-14 3.5E-19 137.1 11.0 84 38-122 282-365 (562)
35 smart00360 RRM RNA recognition 99.6 2E-14 4.3E-19 97.2 8.4 71 46-116 1-71 (71)
36 TIGR01648 hnRNP-R-Q heterogene 99.6 2.2E-14 4.9E-19 134.5 10.8 76 40-123 232-309 (578)
37 COG0724 RNA-binding proteins ( 99.5 2.5E-14 5.4E-19 121.5 10.2 80 41-120 115-194 (306)
38 cd00590 RRM RRM (RNA recogniti 99.5 6.2E-14 1.3E-18 95.6 9.9 74 43-117 1-74 (74)
39 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 4.3E-14 9.4E-19 131.7 11.6 79 39-122 273-352 (481)
40 KOG0148 Apoptosis-promoting RN 99.5 1.7E-14 3.7E-19 120.2 7.2 81 42-122 63-143 (321)
41 KOG0145 RNA-binding protein EL 99.5 5.5E-14 1.2E-18 116.7 10.1 82 40-121 277-358 (360)
42 KOG0145 RNA-binding protein EL 99.5 3.5E-14 7.7E-19 117.8 8.4 86 38-123 38-123 (360)
43 KOG0108 mRNA cleavage and poly 99.5 2.9E-14 6.3E-19 129.2 8.4 85 42-126 19-103 (435)
44 KOG0415 Predicted peptidyl pro 99.5 2.8E-14 6E-19 122.9 6.5 86 36-121 234-319 (479)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.2E-13 2.7E-18 128.7 10.6 76 40-121 1-78 (481)
46 KOG0109 RNA-binding protein LA 99.5 3.6E-14 7.8E-19 119.4 6.2 73 41-121 2-74 (346)
47 KOG0117 Heterogeneous nuclear 99.5 5.8E-14 1.2E-18 124.2 7.8 78 41-126 259-336 (506)
48 KOG0127 Nucleolar protein fibr 99.5 1.3E-13 2.7E-18 124.7 9.3 82 41-123 117-198 (678)
49 KOG0144 RNA-binding protein CU 99.5 4.7E-14 1E-18 124.3 6.0 97 29-126 110-211 (510)
50 PF13893 RRM_5: RNA recognitio 99.4 6.2E-13 1.4E-17 87.4 8.5 56 58-118 1-56 (56)
51 KOG4212 RNA-binding protein hn 99.4 1.1E-12 2.4E-17 115.9 11.2 79 41-120 44-123 (608)
52 KOG0127 Nucleolar protein fibr 99.4 5.7E-13 1.2E-17 120.5 9.4 84 38-121 289-378 (678)
53 smart00361 RRM_1 RNA recogniti 99.4 8.9E-13 1.9E-17 90.8 8.3 61 55-115 2-69 (70)
54 KOG0147 Transcriptional coacti 99.4 2.8E-13 6.1E-18 122.6 6.9 80 44-123 281-360 (549)
55 KOG0144 RNA-binding protein CU 99.4 3.9E-13 8.4E-18 118.5 7.4 88 37-124 30-120 (510)
56 KOG0146 RNA-binding protein ET 99.4 2.5E-13 5.5E-18 113.2 5.5 87 36-122 280-366 (371)
57 KOG0109 RNA-binding protein LA 99.4 4.9E-13 1.1E-17 112.7 6.3 81 38-126 75-155 (346)
58 KOG0124 Polypyrimidine tract-b 99.4 4.1E-13 8.9E-18 116.2 4.7 76 42-117 114-189 (544)
59 KOG4208 Nucleolar RNA-binding 99.3 4.7E-12 1E-16 102.1 8.2 85 37-121 45-130 (214)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.3 6.8E-12 1.5E-16 117.7 9.0 73 40-119 174-258 (509)
61 KOG0131 Splicing factor 3b, su 99.3 7.2E-12 1.6E-16 99.1 6.3 90 36-125 91-181 (203)
62 KOG0132 RNA polymerase II C-te 99.2 1.4E-11 3.1E-16 115.4 7.8 79 41-125 421-499 (894)
63 KOG4206 Spliceosomal protein s 99.2 2.4E-11 5.2E-16 99.4 7.9 82 39-123 7-92 (221)
64 KOG4212 RNA-binding protein hn 99.2 5.7E-11 1.2E-15 105.2 8.4 76 38-118 533-608 (608)
65 KOG0153 Predicted RNA-binding 99.2 6.5E-11 1.4E-15 102.1 8.1 79 36-120 223-302 (377)
66 KOG0123 Polyadenylate-binding 99.2 6.5E-11 1.4E-15 106.3 8.3 79 43-124 78-156 (369)
67 KOG0110 RNA-binding protein (R 99.2 7.4E-11 1.6E-15 109.9 8.2 80 40-119 514-596 (725)
68 KOG0533 RRM motif-containing p 99.2 1.5E-10 3.4E-15 97.3 9.1 85 38-123 80-164 (243)
69 KOG0106 Alternative splicing f 99.2 2.5E-11 5.4E-16 100.0 4.2 72 42-121 2-73 (216)
70 KOG4661 Hsp27-ERE-TATA-binding 99.1 9.1E-11 2E-15 106.9 7.5 86 38-123 402-487 (940)
71 KOG0105 Alternative splicing f 99.1 7.4E-10 1.6E-14 88.0 11.4 92 19-117 93-186 (241)
72 KOG1995 Conserved Zn-finger pr 99.1 1.9E-10 4.2E-15 99.8 7.6 105 18-122 43-155 (351)
73 KOG0124 Polypyrimidine tract-b 99.1 1.5E-10 3.2E-15 100.5 6.9 81 39-119 208-288 (544)
74 KOG0106 Alternative splicing f 99.1 2.9E-10 6.2E-15 93.8 7.7 75 33-115 91-165 (216)
75 KOG0110 RNA-binding protein (R 99.1 8E-11 1.7E-15 109.7 4.9 84 39-122 611-694 (725)
76 KOG4205 RNA-binding protein mu 99.1 1.3E-10 2.8E-15 101.4 5.4 82 40-122 5-86 (311)
77 KOG4676 Splicing factor, argin 99.1 5.3E-10 1.2E-14 97.8 8.7 73 43-116 9-84 (479)
78 KOG0146 RNA-binding protein ET 99.1 1.7E-10 3.6E-15 96.5 5.2 83 40-123 18-103 (371)
79 PF04059 RRM_2: RNA recognitio 99.1 1.1E-09 2.4E-14 79.6 8.8 80 42-121 2-87 (97)
80 KOG4205 RNA-binding protein mu 99.1 3E-10 6.5E-15 99.1 6.8 85 40-125 96-180 (311)
81 KOG4209 Splicing factor RNPS1, 99.0 3E-10 6.5E-15 95.6 6.1 83 38-121 98-180 (231)
82 KOG0116 RasGAP SH3 binding pro 99.0 1.6E-09 3.5E-14 98.0 10.5 85 35-120 282-366 (419)
83 KOG0123 Polyadenylate-binding 99.0 7.5E-10 1.6E-14 99.5 8.2 74 42-121 2-75 (369)
84 KOG4454 RNA binding protein (R 99.0 1.4E-10 3E-15 94.4 2.5 80 38-119 6-85 (267)
85 KOG1457 RNA binding protein (c 99.0 2.7E-09 5.9E-14 87.2 9.5 86 38-123 31-120 (284)
86 KOG1548 Transcription elongati 99.0 1.7E-09 3.8E-14 93.3 8.0 85 38-123 131-223 (382)
87 KOG0151 Predicted splicing reg 98.8 9.5E-09 2.1E-13 96.0 8.5 85 37-121 170-257 (877)
88 KOG1456 Heterogeneous nuclear 98.8 4.4E-08 9.5E-13 85.6 11.3 106 18-123 6-201 (494)
89 KOG4660 Protein Mei2, essentia 98.8 4E-09 8.8E-14 96.2 4.9 71 39-114 73-143 (549)
90 KOG0120 Splicing factor U2AF, 98.8 5.6E-09 1.2E-13 95.8 4.2 88 38-125 286-373 (500)
91 KOG4211 Splicing factor hnRNP- 98.8 2.9E-08 6.4E-13 89.4 8.6 81 37-121 6-86 (510)
92 KOG1190 Polypyrimidine tract-b 98.7 8.1E-08 1.8E-12 84.8 9.4 79 41-124 297-376 (492)
93 KOG0226 RNA-binding proteins [ 98.6 6.9E-08 1.5E-12 80.4 4.8 80 38-117 187-266 (290)
94 PF11608 Limkain-b1: Limkain b 98.6 3E-07 6.5E-12 64.2 7.1 71 42-122 3-78 (90)
95 KOG1456 Heterogeneous nuclear 98.6 7.8E-07 1.7E-11 77.9 11.2 83 36-123 282-365 (494)
96 PF08777 RRM_3: RNA binding mo 98.5 1.6E-07 3.5E-12 69.6 5.6 71 41-117 1-76 (105)
97 KOG4307 RNA binding protein RB 98.5 1E-06 2.2E-11 82.6 10.4 75 43-117 869-943 (944)
98 KOG4206 Spliceosomal protein s 98.5 6.3E-07 1.4E-11 73.7 8.0 79 36-119 141-220 (221)
99 KOG1457 RNA binding protein (c 98.4 1.9E-07 4.1E-12 76.6 4.3 64 42-109 211-274 (284)
100 KOG0147 Transcriptional coacti 98.4 7.3E-08 1.6E-12 88.0 1.4 84 40-124 178-261 (549)
101 KOG4211 Splicing factor hnRNP- 98.4 1.5E-06 3.2E-11 78.7 7.9 79 39-119 101-180 (510)
102 COG5175 MOT2 Transcriptional r 98.3 1.2E-06 2.7E-11 75.8 6.5 80 41-120 114-202 (480)
103 KOG2314 Translation initiation 98.3 2E-06 4.3E-11 79.0 7.9 79 40-119 57-142 (698)
104 PF05172 Nup35_RRM: Nup53/35/4 98.2 4.8E-06 1E-10 61.0 7.2 80 39-120 4-91 (100)
105 KOG4676 Splicing factor, argin 98.2 2.8E-07 6.1E-12 81.0 0.8 75 42-121 152-226 (479)
106 KOG4210 Nuclear localization s 98.2 8.3E-07 1.8E-11 77.2 3.3 84 39-123 182-266 (285)
107 KOG4849 mRNA cleavage factor I 98.2 1.7E-06 3.7E-11 75.2 3.7 76 41-116 80-157 (498)
108 PF14605 Nup35_RRM_2: Nup53/35 98.1 5.8E-06 1.3E-10 53.4 5.2 53 41-100 1-53 (53)
109 KOG2202 U2 snRNP splicing fact 98.1 1.5E-06 3.2E-11 72.8 1.6 70 56-126 83-153 (260)
110 KOG0129 Predicted RNA-binding 98.1 1.3E-05 2.8E-10 73.1 7.6 67 36-102 365-432 (520)
111 KOG0120 Splicing factor U2AF, 98.0 1.6E-05 3.4E-10 73.5 7.6 66 57-122 425-493 (500)
112 KOG1365 RNA-binding protein Fu 98.0 1.4E-05 3.1E-10 70.4 6.1 81 38-119 277-360 (508)
113 KOG3152 TBP-binding protein, a 97.9 4.3E-06 9.2E-11 70.0 2.2 71 42-112 75-157 (278)
114 KOG1548 Transcription elongati 97.9 3.1E-05 6.7E-10 67.5 7.5 77 39-119 263-350 (382)
115 KOG1190 Polypyrimidine tract-b 97.9 3.1E-05 6.6E-10 68.8 6.9 78 39-120 412-490 (492)
116 KOG2416 Acinus (induces apopto 97.9 9E-06 1.9E-10 75.2 3.8 79 37-121 440-522 (718)
117 PF08952 DUF1866: Domain of un 97.9 9.5E-05 2.1E-09 57.4 8.4 57 57-122 52-108 (146)
118 KOG1855 Predicted RNA-binding 97.9 1.3E-05 2.8E-10 71.5 3.9 72 38-109 228-312 (484)
119 KOG1996 mRNA splicing factor [ 97.8 4.9E-05 1.1E-09 64.9 6.6 67 55-121 300-367 (378)
120 KOG0129 Predicted RNA-binding 97.7 0.00017 3.7E-09 66.0 8.2 64 39-103 257-326 (520)
121 KOG4207 Predicted splicing fac 97.7 0.0018 4E-08 52.9 13.0 70 42-111 17-88 (256)
122 KOG4307 RNA binding protein RB 97.5 0.00015 3.2E-09 68.5 5.6 83 36-119 429-512 (944)
123 KOG0112 Large RNA-binding prot 97.5 0.00016 3.5E-09 70.0 5.8 84 37-126 451-536 (975)
124 KOG0128 RNA-binding protein SA 97.3 1.2E-05 2.6E-10 77.2 -4.0 68 42-109 668-735 (881)
125 KOG0128 RNA-binding protein SA 97.3 0.0001 2.2E-09 70.9 2.1 81 41-122 736-816 (881)
126 KOG2193 IGF-II mRNA-binding pr 97.3 0.00018 3.8E-09 64.4 3.3 74 42-123 2-78 (584)
127 KOG1365 RNA-binding protein Fu 97.3 0.00082 1.8E-08 59.5 7.2 71 42-114 162-236 (508)
128 PF10309 DUF2414: Protein of u 97.3 0.0016 3.4E-08 43.2 6.7 56 40-103 4-62 (62)
129 KOG4660 Protein Mei2, essentia 97.2 0.00047 1E-08 63.6 5.3 58 65-122 413-474 (549)
130 KOG2068 MOT2 transcription fac 97.1 0.00014 3E-09 63.4 0.8 79 42-120 78-162 (327)
131 PF03467 Smg4_UPF3: Smg-4/UPF3 97.1 0.00076 1.7E-08 54.7 4.4 85 39-123 5-100 (176)
132 KOG0112 Large RNA-binding prot 97.0 0.00013 2.7E-09 70.7 -0.4 81 37-118 368-448 (975)
133 KOG2135 Proteins containing th 97.0 0.00064 1.4E-08 61.7 3.5 76 39-121 370-446 (526)
134 KOG4285 Mitotic phosphoprotein 96.9 0.0042 9.1E-08 53.5 7.8 75 41-123 197-272 (350)
135 PF03880 DbpA: DbpA RNA bindin 96.9 0.0047 1E-07 42.6 6.3 67 43-118 2-74 (74)
136 PF04847 Calcipressin: Calcipr 96.8 0.0044 9.6E-08 50.5 6.5 63 54-122 8-72 (184)
137 PF07576 BRAP2: BRCA1-associat 96.8 0.025 5.4E-07 42.2 10.0 67 42-110 14-81 (110)
138 KOG2591 c-Mpl binding protein, 96.7 0.0022 4.7E-08 59.4 4.7 73 36-115 170-246 (684)
139 PF08675 RNA_bind: RNA binding 96.7 0.0087 1.9E-07 42.0 6.6 55 42-105 10-64 (87)
140 KOG0115 RNA-binding protein p5 96.7 0.0017 3.7E-08 54.6 3.6 62 42-104 32-93 (275)
141 KOG2253 U1 snRNP complex, subu 96.5 0.0015 3.2E-08 61.6 2.1 74 35-117 34-107 (668)
142 PF15023 DUF4523: Protein of u 96.3 0.02 4.3E-07 44.3 6.9 70 42-119 87-160 (166)
143 KOG4574 RNA-binding protein (c 95.9 0.0057 1.2E-07 59.3 3.0 74 46-125 303-378 (1007)
144 KOG4210 Nuclear localization s 95.5 0.0062 1.3E-07 53.2 1.5 83 40-122 87-169 (285)
145 KOG4019 Calcineurin-mediated s 95.3 0.016 3.4E-07 46.5 2.9 78 39-122 8-91 (193)
146 PF11767 SET_assoc: Histone ly 95.3 0.12 2.6E-06 34.8 6.8 56 52-116 11-66 (66)
147 KOG0804 Cytoplasmic Zn-finger 94.8 0.078 1.7E-06 48.3 6.2 68 41-110 74-142 (493)
148 KOG2318 Uncharacterized conser 93.8 0.26 5.7E-06 46.3 7.7 84 39-122 172-309 (650)
149 KOG4410 5-formyltetrahydrofola 93.3 0.27 5.9E-06 42.3 6.4 64 35-104 324-395 (396)
150 KOG2193 IGF-II mRNA-binding pr 93.0 0.0042 9.1E-08 55.8 -5.1 79 41-122 80-158 (584)
151 KOG4483 Uncharacterized conser 92.6 0.3 6.6E-06 43.9 5.9 60 36-102 386-446 (528)
152 smart00596 PRE_C2HC PRE_C2HC d 91.8 0.24 5.3E-06 33.4 3.4 61 56-119 2-63 (69)
153 PF07530 PRE_C2HC: Associated 91.1 0.51 1.1E-05 31.9 4.4 61 56-119 2-63 (68)
154 PF03468 XS: XS domain; Inter 90.6 0.37 8E-06 36.2 3.7 58 41-101 8-75 (116)
155 KOG2295 C2H2 Zn-finger protein 89.0 0.052 1.1E-06 50.5 -2.3 73 41-113 231-303 (648)
156 KOG2891 Surface glycoprotein [ 88.2 0.13 2.8E-06 44.2 -0.3 39 37-75 145-195 (445)
157 KOG1295 Nonsense-mediated deca 87.4 0.94 2E-05 40.7 4.5 71 39-109 5-78 (376)
158 COG0724 RNA-binding proteins ( 85.5 1.1 2.4E-05 37.1 4.0 66 36-101 220-285 (306)
159 KOG4365 Uncharacterized conser 85.3 0.15 3.2E-06 46.4 -1.6 79 42-121 4-82 (572)
160 COG5638 Uncharacterized conser 83.3 5 0.00011 36.5 7.1 83 37-119 142-296 (622)
161 PF10567 Nab6_mRNP_bdg: RNA-re 82.9 3.2 7E-05 36.1 5.6 83 37-119 11-106 (309)
162 PRK11634 ATP-dependent RNA hel 78.4 62 0.0014 31.6 13.5 63 50-121 496-563 (629)
163 KOG4454 RNA binding protein (R 78.2 0.49 1.1E-05 39.4 -0.8 77 37-114 76-156 (267)
164 PRK11901 hypothetical protein; 78.1 6.1 0.00013 35.0 5.8 64 39-107 243-308 (327)
165 KOG2548 SWAP mRNA splicing reg 74.9 1.3 2.7E-05 41.4 0.8 9 91-99 235-243 (653)
166 PF00403 HMA: Heavy-metal-asso 74.8 13 0.00028 23.9 5.5 54 43-102 1-58 (62)
167 KOG4008 rRNA processing protei 71.2 5.2 0.00011 33.7 3.5 35 37-71 36-70 (261)
168 PRK10629 EnvZ/OmpR regulon mod 68.9 41 0.00088 25.7 7.7 70 42-119 36-109 (127)
169 KOG3702 Nuclear polyadenylated 68.1 2.5 5.5E-05 40.5 1.2 72 43-115 513-584 (681)
170 KOG0107 Alternative splicing f 64.3 77 0.0017 25.7 10.1 12 91-102 58-69 (195)
171 PF15513 DUF4651: Domain of un 61.4 16 0.00035 24.1 3.7 19 56-74 9-27 (62)
172 smart00195 DSPc Dual specifici 60.7 27 0.00059 26.3 5.6 71 42-116 6-84 (138)
173 COG2608 CopZ Copper chaperone 60.5 29 0.00064 23.3 5.1 46 41-92 3-48 (71)
174 CHL00123 rps6 ribosomal protei 60.1 35 0.00076 24.6 5.7 58 43-102 10-81 (97)
175 KOG4840 Predicted hydrolases o 60.0 13 0.00029 31.4 3.8 73 41-118 37-115 (299)
176 cd06404 PB1_aPKC PB1 domain is 59.7 59 0.0013 22.9 6.9 66 44-115 11-80 (83)
177 PRK08559 nusG transcription an 59.6 31 0.00067 27.1 5.8 34 68-106 36-69 (153)
178 COG5193 LHP1 La protein, small 59.6 5.1 0.00011 36.3 1.4 60 42-101 175-244 (438)
179 PF02714 DUF221: Domain of unk 59.0 10 0.00022 33.4 3.3 33 86-120 1-33 (325)
180 PRK14548 50S ribosomal protein 58.7 34 0.00074 24.1 5.2 57 44-103 23-81 (84)
181 PF08734 GYD: GYD domain; Int 58.0 48 0.001 23.5 6.0 45 55-103 22-67 (91)
182 smart00666 PB1 PB1 domain. Pho 57.5 56 0.0012 22.1 6.2 56 44-104 12-69 (81)
183 cd00027 BRCT Breast Cancer Sup 57.5 40 0.00086 21.1 5.3 27 42-68 2-28 (72)
184 COG0150 PurM Phosphoribosylami 56.1 5.7 0.00012 35.4 1.1 48 55-106 275-322 (345)
185 PF15063 TC1: Thyroid cancer p 56.0 1.6 3.5E-05 29.9 -1.8 26 44-69 28-53 (79)
186 PRK11230 glycolate oxidase sub 55.7 41 0.00089 31.8 6.9 62 42-104 190-255 (499)
187 KOG4213 RNA-binding protein La 55.2 17 0.00037 29.5 3.5 60 53-113 118-179 (205)
188 PF14893 PNMA: PNMA 54.6 11 0.00024 33.6 2.7 26 39-64 16-41 (331)
189 PF03439 Spt5-NGN: Early trans 54.4 41 0.00088 23.5 5.1 28 82-109 43-70 (84)
190 COG2061 ACT-domain-containing 53.1 85 0.0018 24.8 7.0 71 36-107 83-155 (170)
191 TIGR03636 L23_arch archaeal ri 53.0 35 0.00075 23.6 4.4 57 44-103 16-74 (77)
192 PF14581 SseB_C: SseB protein 52.8 28 0.0006 25.3 4.3 79 41-119 5-89 (108)
193 PF07292 NID: Nmi/IFP 35 domai 52.5 8 0.00017 27.5 1.2 24 40-63 51-74 (88)
194 PF07292 NID: Nmi/IFP 35 domai 51.0 24 0.00051 25.1 3.4 33 86-118 1-34 (88)
195 PRK04199 rpl10e 50S ribosomal 50.3 87 0.0019 25.2 6.9 27 84-111 129-159 (172)
196 cd06396 PB1_NBR1 The PB1 domai 50.3 86 0.0019 21.9 6.2 65 45-117 12-78 (81)
197 PF13291 ACT_4: ACT domain; PD 49.6 53 0.0011 22.1 5.1 65 42-106 7-72 (80)
198 PF08544 GHMP_kinases_C: GHMP 49.4 66 0.0014 21.7 5.6 43 56-103 37-79 (85)
199 PF14026 DUF4242: Protein of u 49.3 84 0.0018 21.6 7.7 62 44-108 3-71 (77)
200 KOG3424 40S ribosomal protein 48.8 54 0.0012 24.7 5.1 46 52-98 34-84 (132)
201 PF05189 RTC_insert: RNA 3'-te 48.8 47 0.001 24.0 4.9 49 43-91 12-65 (103)
202 PF09707 Cas_Cas2CT1978: CRISP 47.9 37 0.0008 24.0 4.0 49 40-91 24-72 (86)
203 PF11823 DUF3343: Protein of u 47.3 23 0.00051 23.8 2.9 27 85-111 3-29 (73)
204 COG4010 Uncharacterized protei 46.3 56 0.0012 25.5 5.0 46 48-103 118-163 (170)
205 KOG0156 Cytochrome P450 CYP2 s 45.9 42 0.00092 31.7 5.3 60 44-113 35-97 (489)
206 PF04127 DFP: DNA / pantothena 45.3 46 0.001 27.0 4.8 59 43-103 20-79 (185)
207 cd04878 ACT_AHAS N-terminal AC 45.1 78 0.0017 20.0 6.9 60 43-104 2-63 (72)
208 PF09902 DUF2129: Uncharacteri 45.1 48 0.001 22.6 4.1 39 61-108 16-54 (71)
209 COG5507 Uncharacterized conser 44.5 27 0.00058 25.4 2.8 21 83-103 66-86 (117)
210 PF08156 NOP5NT: NOP5NT (NUC12 44.1 7.3 0.00016 26.2 -0.1 38 56-103 27-64 (67)
211 cd06405 PB1_Mekk2_3 The PB1 do 43.4 1.1E+02 0.0023 21.1 7.3 60 48-116 15-75 (79)
212 PF05036 SPOR: Sporulation rel 43.0 2.6 5.7E-05 28.1 -2.5 61 41-104 4-65 (76)
213 PRK02886 hypothetical protein; 42.8 52 0.0011 23.4 4.0 39 61-108 20-58 (87)
214 COG0030 KsgA Dimethyladenosine 42.7 32 0.0007 29.6 3.6 28 41-68 95-122 (259)
215 PF11491 DUF3213: Protein of u 42.2 37 0.00079 23.8 3.1 66 44-116 3-72 (88)
216 cd04908 ACT_Bt0572_1 N-termina 41.8 95 0.0021 20.0 8.1 49 54-107 14-63 (66)
217 TIGR00387 glcD glycolate oxida 41.6 72 0.0016 29.3 6.0 51 52-103 143-197 (413)
218 TIGR00110 ilvD dihydroxy-acid 41.3 1.1E+02 0.0024 29.3 7.2 37 82-121 382-418 (535)
219 PF14111 DUF4283: Domain of un 41.2 8.5 0.00018 29.7 -0.1 59 52-119 28-90 (153)
220 PRK02302 hypothetical protein; 40.4 59 0.0013 23.2 4.1 39 61-108 22-60 (89)
221 KOG3671 Actin regulatory prote 40.2 48 0.001 31.2 4.5 49 53-106 90-138 (569)
222 PRK00911 dihydroxy-acid dehydr 39.2 1.2E+02 0.0027 29.1 7.2 38 82-122 397-434 (552)
223 PF01037 AsnC_trans_reg: AsnC 39.1 1.1E+02 0.0023 19.9 8.0 45 54-102 11-55 (74)
224 PRK10905 cell division protein 38.5 56 0.0012 29.0 4.5 63 39-106 245-309 (328)
225 cd04903 ACT_LSD C-terminal ACT 38.4 1E+02 0.0022 19.4 5.4 48 53-103 11-59 (71)
226 KOG2187 tRNA uracil-5-methyltr 37.9 27 0.00058 33.1 2.6 39 83-121 63-101 (534)
227 COG5470 Uncharacterized conser 37.7 67 0.0015 23.2 4.0 41 58-100 25-70 (96)
228 PTZ00191 60S ribosomal protein 37.6 80 0.0017 24.7 4.8 55 44-101 84-140 (145)
229 KOG1999 RNA polymerase II tran 37.6 69 0.0015 32.7 5.4 33 82-115 209-241 (1024)
230 PF01282 Ribosomal_S24e: Ribos 37.6 1.4E+02 0.0031 20.8 6.3 47 51-98 11-62 (84)
231 PF00398 RrnaAD: Ribosomal RNA 37.3 25 0.00054 30.1 2.2 23 41-63 97-119 (262)
232 KOG2888 Putative RNA binding p 37.2 24 0.00051 31.4 2.0 11 55-65 171-181 (453)
233 PF07876 Dabb: Stress responsi 37.1 1.4E+02 0.003 20.6 6.7 56 44-99 4-70 (97)
234 PF12623 Hen1_L: RNA repair, l 37.0 1E+02 0.0022 26.1 5.6 66 37-103 114-183 (245)
235 PF09869 DUF2096: Uncharacteri 36.5 1.8E+02 0.0039 23.3 6.6 49 44-103 115-163 (169)
236 PF11411 DNA_ligase_IV: DNA li 36.4 25 0.00055 20.5 1.4 17 51-67 19-35 (36)
237 TIGR00405 L26e_arch ribosomal 36.2 1.1E+02 0.0025 23.4 5.6 25 82-106 37-61 (145)
238 PF08442 ATP-grasp_2: ATP-gras 36.1 89 0.0019 25.8 5.2 54 53-109 25-81 (202)
239 PLN02805 D-lactate dehydrogena 36.0 1E+02 0.0023 29.6 6.3 50 54-104 279-332 (555)
240 TIGR00279 L10e ribosomal prote 35.6 1.3E+02 0.0027 24.3 5.7 19 92-111 141-159 (172)
241 COG5236 Uncharacterized conser 35.6 81 0.0018 28.3 5.0 51 55-113 264-314 (493)
242 PF01071 GARS_A: Phosphoribosy 35.5 61 0.0013 26.6 4.1 46 54-103 25-70 (194)
243 COG1207 GlmU N-acetylglucosami 35.4 1.3E+02 0.0027 28.1 6.3 67 40-106 96-174 (460)
244 PF07237 DUF1428: Protein of u 34.9 1.1E+02 0.0023 22.5 4.8 47 57-103 24-85 (103)
245 cd04879 ACT_3PGDH-like ACT_3PG 34.4 1.2E+02 0.0026 19.0 5.6 32 44-75 2-34 (71)
246 PF14111 DUF4283: Domain of un 34.3 40 0.00086 25.8 2.7 36 41-76 104-140 (153)
247 PF02426 MIase: Muconolactone 34.3 1.7E+02 0.0038 20.9 7.1 58 48-109 10-77 (91)
248 PF08206 OB_RNB: Ribonuclease 34.1 7.2 0.00016 25.2 -1.3 37 82-119 7-44 (58)
249 PRK12448 dihydroxy-acid dehydr 33.8 1.6E+02 0.0034 28.7 7.0 37 83-122 448-484 (615)
250 PF12687 DUF3801: Protein of u 33.8 58 0.0013 26.9 3.7 57 53-111 39-98 (204)
251 COG0129 IlvD Dihydroxyacid deh 33.5 1.7E+02 0.0037 28.3 7.1 37 83-122 415-451 (575)
252 PRK01178 rps24e 30S ribosomal 33.0 1.5E+02 0.0033 21.5 5.3 46 52-98 30-80 (99)
253 PTZ00071 40S ribosomal protein 32.8 1.1E+02 0.0023 23.6 4.7 45 52-97 35-85 (132)
254 KOG2888 Putative RNA binding p 32.6 36 0.00079 30.3 2.4 9 83-91 160-168 (453)
255 COG1098 VacB Predicted RNA bin 32.6 79 0.0017 24.1 3.9 35 85-119 20-62 (129)
256 PF09507 CDC27: DNA polymerase 32.6 25 0.00055 32.1 1.6 58 48-105 13-82 (430)
257 TIGR00755 ksgA dimethyladenosi 32.4 51 0.0011 27.9 3.3 25 43-67 96-120 (253)
258 PF00564 PB1: PB1 domain; Int 32.2 53 0.0012 22.3 2.8 54 47-105 16-71 (84)
259 PF01842 ACT: ACT domain; Int 32.1 1.3E+02 0.0028 18.8 4.8 47 54-103 13-61 (66)
260 COG1839 Uncharacterized conser 32.0 2E+02 0.0042 22.5 6.0 27 39-65 13-39 (162)
261 PRK11558 putative ssRNA endonu 32.0 76 0.0016 23.0 3.6 49 41-92 27-75 (97)
262 COG5584 Predicted small secret 31.8 79 0.0017 22.9 3.6 31 48-78 29-59 (103)
263 TIGR01873 cas_CT1978 CRISPR-as 31.7 34 0.00074 24.3 1.7 47 41-92 25-74 (87)
264 TIGR00587 nfo apurinic endonuc 31.3 65 0.0014 27.7 3.8 58 41-104 137-202 (274)
265 KOG1232 Proteins containing th 31.0 63 0.0014 29.6 3.6 52 48-100 231-286 (511)
266 cd04909 ACT_PDH-BS C-terminal 30.0 1.5E+02 0.0033 18.9 7.2 48 54-103 14-62 (69)
267 PRK00274 ksgA 16S ribosomal RN 29.8 50 0.0011 28.4 2.8 22 43-64 107-128 (272)
268 COG3254 Uncharacterized conser 29.7 1.8E+02 0.0039 21.4 5.2 43 55-100 26-68 (105)
269 PRK06131 dihydroxy-acid dehydr 29.7 2.4E+02 0.0051 27.4 7.4 37 83-122 401-439 (571)
270 PRK12450 foldase protein PrsA; 29.6 91 0.002 27.5 4.5 39 52-104 132-170 (309)
271 cd04880 ACT_AAAH-PDT-like ACT 28.4 1.8E+02 0.0039 19.2 6.5 51 54-105 12-66 (75)
272 PF05573 NosL: NosL; InterPro 28.3 22 0.00048 27.7 0.4 21 83-103 114-134 (149)
273 cd04887 ACT_MalLac-Enz ACT_Mal 28.2 1.7E+02 0.0038 18.9 6.7 61 44-105 2-63 (74)
274 PF12829 Mhr1: Transcriptional 28.1 70 0.0015 22.9 2.8 52 49-104 20-72 (91)
275 COG0225 MsrA Peptide methionin 27.9 1.4E+02 0.003 24.2 4.7 76 43-122 59-139 (174)
276 KOG2854 Possible pfkB family c 27.9 69 0.0015 28.6 3.3 61 41-101 160-230 (343)
277 KOG2135 Proteins containing th 27.8 24 0.00051 32.9 0.5 64 49-120 205-268 (526)
278 KOG0151 Predicted splicing reg 27.6 73 0.0016 31.4 3.6 11 86-96 695-705 (877)
279 PTZ00338 dimethyladenosine tra 27.6 61 0.0013 28.4 3.0 22 43-64 103-124 (294)
280 PF03389 MobA_MobL: MobA/MobL 27.6 1.3E+02 0.0028 25.1 4.8 47 43-92 69-123 (216)
281 cd05992 PB1 The PB1 domain is 27.3 1.9E+02 0.0042 19.2 5.7 52 48-104 15-69 (81)
282 cd04917 ACT_AKiii-LysC-EC_2 AC 27.2 93 0.002 19.9 3.2 17 92-108 47-63 (64)
283 PRK11633 cell division protein 27.0 1.6E+02 0.0035 24.8 5.3 73 40-114 148-222 (226)
284 TIGR02223 ftsN cell division p 26.9 1.1E+02 0.0025 26.9 4.5 71 40-114 226-297 (298)
285 COG0079 HisC Histidinol-phosph 26.9 93 0.002 28.1 4.1 50 40-100 145-198 (356)
286 COG4471 Uncharacterized protei 26.8 1.5E+02 0.0032 21.1 4.2 39 61-108 21-59 (90)
287 smart00650 rADc Ribosomal RNA 26.8 79 0.0017 24.8 3.3 23 42-64 78-100 (169)
288 PF13689 DUF4154: Domain of un 26.8 1.3E+02 0.0027 23.1 4.4 60 55-119 2-61 (145)
289 KOG3414 Component of the U4/U6 26.7 3E+02 0.0064 21.2 6.6 70 43-116 57-132 (142)
290 PF14401 RLAN: RimK-like ATPgr 26.4 95 0.0021 24.4 3.6 61 40-100 86-147 (153)
291 KOG3772 M-phase inducer phosph 26.3 1.4E+02 0.0029 26.7 4.9 71 52-124 157-235 (325)
292 cd04905 ACT_CM-PDT C-terminal 26.3 2.1E+02 0.0045 19.2 6.4 51 54-105 14-68 (80)
293 KOG4357 Uncharacterized conser 26.2 3E+02 0.0064 21.0 6.0 25 85-109 115-139 (164)
294 PF09383 NIL: NIL domain; Int 25.8 77 0.0017 21.2 2.7 56 51-106 12-69 (76)
295 PF00585 Thr_dehydrat_C: C-ter 25.8 1.3E+02 0.0028 21.3 3.9 62 43-106 11-74 (91)
296 cd04889 ACT_PDH-BS-like C-term 25.7 1.7E+02 0.0036 17.9 6.3 43 55-100 12-55 (56)
297 PF01762 Galactosyl_T: Galacto 25.3 78 0.0017 25.5 3.1 33 42-74 22-57 (195)
298 PRK10162 acetyl esterase; Prov 25.3 1.9E+02 0.0042 25.2 5.8 57 40-102 249-307 (318)
299 smart00738 NGN In Spt5p, this 25.2 1.2E+02 0.0025 21.5 3.8 24 83-106 59-82 (106)
300 COG0045 SucC Succinyl-CoA synt 25.2 2.6E+02 0.0056 25.6 6.5 66 53-121 26-98 (387)
301 cd04883 ACT_AcuB C-terminal AC 25.1 1.9E+02 0.0042 18.5 8.6 51 54-107 14-67 (72)
302 cd00127 DSPc Dual specificity 25.1 1.8E+02 0.004 21.4 5.0 19 41-59 6-24 (139)
303 TIGR01033 DNA-binding regulato 24.7 2.2E+02 0.0049 24.1 5.8 45 40-91 93-143 (238)
304 PRK12378 hypothetical protein; 24.6 2.1E+02 0.0046 24.2 5.6 27 41-67 91-119 (235)
305 KOG3262 H/ACA small nucleolar 24.3 3.8E+02 0.0082 22.0 6.6 11 86-96 81-91 (215)
306 KOG1579 Homocysteine S-methylt 24.3 83 0.0018 27.9 3.2 63 48-119 136-198 (317)
307 PRK04405 prsA peptidylprolyl i 24.3 1.4E+02 0.0031 26.1 4.7 40 52-105 128-167 (298)
308 PLN02655 ent-kaurene oxidase 24.2 1.4E+02 0.003 27.6 5.0 49 45-102 9-60 (466)
309 PF05929 Phage_GPO: Phage caps 24.2 2.1E+02 0.0046 24.9 5.6 58 61-119 52-109 (276)
310 cd06407 PB1_NLP A PB1 domain i 24.2 2.5E+02 0.0055 19.5 6.9 55 44-103 11-68 (82)
311 KOG1719 Dual specificity phosp 24.1 2.5E+02 0.0054 22.5 5.4 27 91-117 90-116 (183)
312 PLN02707 Soluble inorganic pyr 24.1 58 0.0013 28.2 2.1 41 56-105 208-249 (267)
313 PF13046 DUF3906: Protein of u 24.0 84 0.0018 20.9 2.4 33 54-88 31-63 (64)
314 KOG4388 Hormone-sensitive lipa 23.6 1.2E+02 0.0025 29.6 4.1 59 39-103 787-851 (880)
315 PRK07868 acyl-CoA synthetase; 23.5 4.7E+02 0.01 27.1 8.9 60 52-111 868-932 (994)
316 cd04904 ACT_AAAH ACT domain of 23.4 2.3E+02 0.005 18.8 7.8 50 54-105 13-65 (74)
317 PRK13016 dihydroxy-acid dehydr 23.3 3.2E+02 0.0069 26.5 7.0 37 83-122 406-444 (577)
318 PRK05772 translation initiatio 23.2 2.6E+02 0.0056 25.4 6.2 49 53-103 3-56 (363)
319 COG1369 POP5 RNase P/RNase MRP 23.0 3.1E+02 0.0067 20.8 5.6 64 51-117 27-99 (124)
320 PHA01632 hypothetical protein 22.7 79 0.0017 20.4 2.0 21 44-64 19-39 (64)
321 PF14268 YoaP: YoaP-like 22.6 64 0.0014 19.7 1.6 35 85-119 2-38 (44)
322 PF13820 Nucleic_acid_bd: Puta 22.6 1.2E+02 0.0027 23.8 3.6 23 83-105 45-67 (149)
323 TIGR02542 B_forsyth_147 Bacter 22.6 61 0.0013 24.4 1.7 46 49-94 82-130 (145)
324 PRK14054 methionine sulfoxide 22.5 2.2E+02 0.0047 22.9 5.1 75 43-120 56-134 (172)
325 PRK13014 methionine sulfoxide 22.5 2.3E+02 0.005 23.1 5.2 75 43-120 61-139 (186)
326 PF02829 3H: 3H domain; Inter 22.3 3E+02 0.0064 19.9 5.3 51 52-105 8-58 (98)
327 smart00457 MACPF membrane-atta 22.2 1.1E+02 0.0023 24.8 3.3 28 46-73 30-59 (194)
328 PF06014 DUF910: Bacterial pro 22.2 63 0.0014 21.4 1.5 18 54-71 3-20 (62)
329 PF08538 DUF1749: Protein of u 22.1 86 0.0019 27.7 2.9 60 39-103 32-97 (303)
330 COG0217 Uncharacterized conser 22.0 2.8E+02 0.006 23.7 5.7 36 41-76 94-135 (241)
331 smart00633 Glyco_10 Glycosyl h 21.9 3.4E+02 0.0073 22.9 6.5 66 39-116 116-188 (254)
332 PF07521 RMMBL: RNA-metabolisi 21.9 1.3E+02 0.0028 17.9 2.9 33 41-74 6-38 (43)
333 PLN00110 flavonoid 3',5'-hydro 21.8 2.2E+02 0.0048 26.7 5.8 49 45-102 41-91 (504)
334 cd06408 PB1_NoxR The PB1 domai 21.6 2.1E+02 0.0046 20.2 4.2 54 44-103 13-67 (86)
335 PRK13011 formyltetrahydrofolat 21.6 2E+02 0.0042 25.2 5.0 61 48-109 56-116 (286)
336 PF11150 DUF2927: Protein of u 21.5 3E+02 0.0065 22.9 5.9 63 36-101 28-93 (213)
337 cd04929 ACT_TPH ACT domain of 21.5 2.7E+02 0.0058 18.8 7.3 50 55-105 14-65 (74)
338 cd04876 ACT_RelA-SpoT ACT dom 21.5 2E+02 0.0043 17.3 6.4 49 54-105 11-62 (71)
339 cd04902 ACT_3PGDH-xct C-termin 21.4 2.3E+02 0.0051 18.0 5.0 51 53-105 11-64 (73)
340 PRK12757 cell division protein 21.4 2.5E+02 0.0055 24.2 5.4 67 41-113 184-251 (256)
341 PF10994 DUF2817: Protein of u 21.3 67 0.0014 28.9 2.1 52 41-92 179-231 (341)
342 smart00115 CASc Caspase, inter 21.2 2.8E+02 0.0062 23.3 5.9 31 39-69 7-46 (241)
343 PRK05550 bifunctional methioni 21.1 2.2E+02 0.0047 24.9 5.1 22 43-64 180-201 (283)
344 PRK14046 malate--CoA ligase su 21.0 3.7E+02 0.0081 24.6 6.9 52 54-108 27-81 (392)
345 PF13721 SecD-TM1: SecD export 20.8 3.3E+02 0.0072 19.6 6.7 57 43-107 33-93 (101)
346 KOG0226 RNA-binding proteins [ 20.8 40 0.00086 29.0 0.5 73 42-115 97-172 (290)
347 PF01782 RimM: RimM N-terminal 20.4 2E+02 0.0043 19.6 4.0 25 83-108 54-78 (84)
348 smart00434 TOP4c DNA Topoisome 20.3 2.5E+02 0.0053 26.3 5.6 57 42-99 233-293 (445)
349 PF10567 Nab6_mRNP_bdg: RNA-re 20.2 2.8E+02 0.006 24.5 5.4 39 67-105 173-213 (309)
350 cd04882 ACT_Bt0572_2 C-termina 20.2 2.3E+02 0.005 17.5 5.9 49 56-107 14-63 (65)
351 KOG1546 Metacaspase involved i 20.0 5.5E+02 0.012 23.1 7.3 71 43-120 66-148 (362)
No 1
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.91 E-value=1.4e-22 Score=162.16 Aligned_cols=85 Identities=46% Similarity=0.770 Sum_probs=80.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
+.-++|.|-||.+.++.++|..+|++||.|.+|.|+.+..|...+|||||.|.+..+|+.||++|+|.+|+|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 44467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 025401 119 EENRK 123 (253)
Q Consensus 119 ~~~~~ 123 (253)
+....
T Consensus 91 rygr~ 95 (256)
T KOG4207|consen 91 RYGRP 95 (256)
T ss_pred hcCCC
Confidence 87655
No 2
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=8.1e-22 Score=154.11 Aligned_cols=82 Identities=27% Similarity=0.602 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
..+..++|||+||+..+++.||+.+|.+||.|..|+|..++ .|||||||+++.||+.|+..|+|..|.|..|.|+
T Consensus 6 ~~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE 80 (195)
T KOG0107|consen 6 DRNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVE 80 (195)
T ss_pred ccCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEE
Confidence 44668999999999999999999999999999999998764 8999999999999999999999999999999999
Q ss_pred EcccCCC
Q 025401 117 FAEENRK 123 (253)
Q Consensus 117 ~a~~~~~ 123 (253)
+++....
T Consensus 81 ~S~G~~r 87 (195)
T KOG0107|consen 81 LSTGRPR 87 (195)
T ss_pred eecCCcc
Confidence 9886654
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=1.6e-20 Score=147.49 Aligned_cols=90 Identities=31% Similarity=0.507 Sum_probs=83.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 35 GRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 35 ~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
+......++|||+|||++++|++|+++|.+||.|+.|.|+.+..++.++|||||+|++.++|+.||+.||+.+|+|+.|+
T Consensus 28 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCCC
Q 025401 115 VVFAEENRKK 124 (253)
Q Consensus 115 V~~a~~~~~~ 124 (253)
|+++......
T Consensus 108 V~~a~~~~~~ 117 (144)
T PLN03134 108 VNPANDRPSA 117 (144)
T ss_pred EEeCCcCCCC
Confidence 9999865443
No 4
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.4e-18 Score=146.24 Aligned_cols=85 Identities=32% Similarity=0.527 Sum_probs=80.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
++-+||||+-|+++++|..|+..|++||+|+.|.|+.++.||+++|||||+|+++.++..|.+..+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccCCC
Q 025401 119 EENRK 123 (253)
Q Consensus 119 ~~~~~ 123 (253)
.....
T Consensus 179 RgRTv 183 (335)
T KOG0113|consen 179 RGRTV 183 (335)
T ss_pred ccccc
Confidence 65544
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.78 E-value=2.1e-18 Score=153.57 Aligned_cols=86 Identities=24% Similarity=0.455 Sum_probs=80.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+....++|||+|||+++|+++|+++|.+||+|+.|.|+.+..++.++|||||+|.++++|+.||+.||+..|.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccC
Q 025401 116 VFAEEN 121 (253)
Q Consensus 116 ~~a~~~ 121 (253)
.++++.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998754
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=7.4e-18 Score=150.79 Aligned_cols=84 Identities=27% Similarity=0.448 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
..+.+|||+|||+.+++++|.++|.+||.|+.|.|+.+..++.++|||||+|.+.++|..||+.|||..|+|+.|.|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 33457999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccCC
Q 025401 119 EENR 122 (253)
Q Consensus 119 ~~~~ 122 (253)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 8654
No 7
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=8e-18 Score=138.15 Aligned_cols=87 Identities=34% Similarity=0.541 Sum_probs=83.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 35 GRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 35 ~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
....+..++|-|.||+.+++|++|++||.+||.|..|.|..++.||.++|||||.|.+.++|++||..|||.-++...|.
T Consensus 183 ~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr 262 (270)
T KOG0122|consen 183 MRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR 262 (270)
T ss_pred cccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccC
Q 025401 115 VVFAEEN 121 (253)
Q Consensus 115 V~~a~~~ 121 (253)
|+|+++.
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999875
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=1.3e-17 Score=149.31 Aligned_cols=83 Identities=31% Similarity=0.575 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
..++|||+|||..++|++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+.|.|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred cCC
Q 025401 120 ENR 122 (253)
Q Consensus 120 ~~~ 122 (253)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 554
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.73 E-value=2.1e-17 Score=113.05 Aligned_cols=70 Identities=36% Similarity=0.673 Sum_probs=66.6
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
|||+|||.++++++|+++|.+||.|..+.|..+ .++...++|||+|.+.++|+.||+.|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 5788899999999999999999999999999999885
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=9.9e-17 Score=142.83 Aligned_cols=86 Identities=31% Similarity=0.490 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC--eEEEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG--RELTVV 116 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~ 116 (253)
...++|||+|||..|+|++|+++|.+||+|+.|.|+.++.++.+++||||+|++.++|++||+.||++.|.+ +.|.|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 346789999999999999999999999999999999998899999999999999999999999999999876 689999
Q ss_pred EcccCCCC
Q 025401 117 FAEENRKK 124 (253)
Q Consensus 117 ~a~~~~~~ 124 (253)
+|+.....
T Consensus 271 ~a~~~~~~ 278 (346)
T TIGR01659 271 LAEEHGKA 278 (346)
T ss_pred ECCccccc
Confidence 98876443
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=3e-17 Score=122.34 Aligned_cols=81 Identities=27% Similarity=0.448 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...+||||+||.+.++|++|.++|.++|+|..|.|-.+..+..+.|||||+|...++|+.||+.|+++.|+.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred c
Q 025401 119 E 119 (253)
Q Consensus 119 ~ 119 (253)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 12
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=8.1e-17 Score=121.07 Aligned_cols=84 Identities=24% Similarity=0.427 Sum_probs=79.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
.++.|||+++...+||++|.+.|..||+|.+|.|..+.-||-.+|||+|+|++.++|++||..|||..|.|+.|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 025401 120 ENRK 123 (253)
Q Consensus 120 ~~~~ 123 (253)
...+
T Consensus 151 v~gp 154 (170)
T KOG0130|consen 151 VKGP 154 (170)
T ss_pred ecCC
Confidence 6644
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=7.1e-16 Score=105.97 Aligned_cols=70 Identities=31% Similarity=0.629 Sum_probs=64.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
|||+|||+.+++++|.++|..||.|..|.+..++. +..+++|||+|.++++|+.|++.+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999998876 88899999999999999999999999999999874
No 14
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=6.3e-16 Score=136.46 Aligned_cols=88 Identities=24% Similarity=0.424 Sum_probs=80.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec-Ce
Q 025401 33 GGGRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL-GR 111 (253)
Q Consensus 33 ~~~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g~ 111 (253)
-.+.....+|-||||.||.++.|++|..||++.|+|-++.|++++.+|.++|||||+|.+.++|+.||+.||+.+|. |+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 33456688999999999999999999999999999999999999999999999999999999999999999999987 88
Q ss_pred EEEEEEccc
Q 025401 112 ELTVVFAEE 120 (253)
Q Consensus 112 ~l~V~~a~~ 120 (253)
.|.|+.+..
T Consensus 155 ~igvc~Sva 163 (506)
T KOG0117|consen 155 LLGVCVSVA 163 (506)
T ss_pred EeEEEEeee
Confidence 888887553
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=2.5e-16 Score=128.86 Aligned_cols=82 Identities=28% Similarity=0.496 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
+..-++||||+|+|.+..++|..+|++||+|++..|+.|+.++.++||+||+|.+.+.|+.|++. .+-.|+|++..|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34567899999999999999999999999999999999999999999999999999999999985 55689999999998
Q ss_pred ccc
Q 025401 118 AEE 120 (253)
Q Consensus 118 a~~ 120 (253)
|--
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 876
No 16
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=3.9e-16 Score=133.07 Aligned_cols=85 Identities=32% Similarity=0.578 Sum_probs=78.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 35 GRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 35 ~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
....+.++.|+|.|||+...+.||..+|++||+|.+|.|+.+ +..+|||+||+|++.+||++|-++|||..|.|++|+
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 455677899999999999999999999999999999999987 456799999999999999999999999999999999
Q ss_pred EEEcccC
Q 025401 115 VVFAEEN 121 (253)
Q Consensus 115 V~~a~~~ 121 (253)
|..|+..
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9998864
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.64 E-value=1.2e-15 Score=143.04 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
+..++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|||+.|+|..|.|.+|
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ccCCC
Q 025401 119 EENRK 123 (253)
Q Consensus 119 ~~~~~ 123 (253)
.....
T Consensus 373 ~~~~~ 377 (509)
T TIGR01642 373 CVGAN 377 (509)
T ss_pred ccCCC
Confidence 75543
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.64 E-value=1.4e-15 Score=128.15 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
.++|||+||++.+++++|++||+.||+|+.|.|+.+.. ..|||||+|.+.++|+.||. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999987753 46899999999999999996 999999999999999875
Q ss_pred CC
Q 025401 121 NR 122 (253)
Q Consensus 121 ~~ 122 (253)
-.
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.63 E-value=2e-15 Score=139.80 Aligned_cols=81 Identities=40% Similarity=0.674 Sum_probs=77.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|||..|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999988889999999999999999999999999999999999999874
Q ss_pred C
Q 025401 121 N 121 (253)
Q Consensus 121 ~ 121 (253)
.
T Consensus 266 ~ 266 (457)
T TIGR01622 266 S 266 (457)
T ss_pred C
Confidence 3
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=2.4e-15 Score=141.00 Aligned_cols=82 Identities=26% Similarity=0.454 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec-CeEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL-GRELT 114 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g~~l~ 114 (253)
.+.+..++|||+|||.+++|++|.++|++||.|..|.|+.+ .++.++|||||+|.+.++|++||+.||+.+|. |+.|.
T Consensus 53 ~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~ 131 (578)
T TIGR01648 53 VQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLG 131 (578)
T ss_pred CCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccc
Confidence 44566799999999999999999999999999999999999 78999999999999999999999999999885 67666
Q ss_pred EEEc
Q 025401 115 VVFA 118 (253)
Q Consensus 115 V~~a 118 (253)
|.++
T Consensus 132 V~~S 135 (578)
T TIGR01648 132 VCIS 135 (578)
T ss_pred cccc
Confidence 6544
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.62 E-value=2.9e-15 Score=140.81 Aligned_cols=83 Identities=27% Similarity=0.323 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...++|||+||++++++++|+++|+.||.|+.|.|+.+..++..+|||||+|.+.++|++||+.||+..|+|+.|.|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34579999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred ccC
Q 025401 119 EEN 121 (253)
Q Consensus 119 ~~~ 121 (253)
...
T Consensus 282 i~p 284 (612)
T TIGR01645 282 VTP 284 (612)
T ss_pred CCC
Confidence 854
No 22
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.61 E-value=1e-15 Score=120.73 Aligned_cols=84 Identities=27% Similarity=0.412 Sum_probs=80.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+.+...||||+||+..++++.|.++|-+.|+|+.|.|+.+..+...+|||||||.++|+|+.||+.||...|.|++|.|
T Consensus 4 ~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 4 IERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred cccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcc
Q 025401 116 VFAE 119 (253)
Q Consensus 116 ~~a~ 119 (253)
..+.
T Consensus 84 ~kas 87 (203)
T KOG0131|consen 84 NKAS 87 (203)
T ss_pred Eecc
Confidence 9887
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.61 E-value=2.2e-15 Score=141.50 Aligned_cols=81 Identities=32% Similarity=0.587 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...++|||+||++.+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|+.||+.|||..|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred c
Q 025401 119 E 119 (253)
Q Consensus 119 ~ 119 (253)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 24
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.9e-15 Score=118.45 Aligned_cols=80 Identities=33% Similarity=0.492 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
..++|||+|||.+|.+.+|++||-+||.|.+|.|...+ ....||||+|+++.+|+.||..-+|..++|+.|.|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 35789999999999999999999999999999986542 246799999999999999999999999999999999988
Q ss_pred cCC
Q 025401 120 ENR 122 (253)
Q Consensus 120 ~~~ 122 (253)
...
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 665
No 25
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=9.7e-17 Score=126.43 Aligned_cols=83 Identities=27% Similarity=0.448 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
...-|||||||+++||.||..+|++||+|++|.|+.++.||+++||||+.|++......|+..|||..|.|+.|.|.+..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCC
Q 025401 120 ENR 122 (253)
Q Consensus 120 ~~~ 122 (253)
.-+
T Consensus 114 ~Yk 116 (219)
T KOG0126|consen 114 NYK 116 (219)
T ss_pred ccc
Confidence 443
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.61 E-value=9e-15 Score=135.39 Aligned_cols=82 Identities=23% Similarity=0.440 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
....+|||+|||..+++++|+++|.+||.|..|.|+.+..++..+|||||+|.+.++|++||. |+|..|.|..|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 346799999999999999999999999999999999998899999999999999999999998 9999999999999986
Q ss_pred ccC
Q 025401 119 EEN 121 (253)
Q Consensus 119 ~~~ 121 (253)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 543
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.1e-16 Score=125.35 Aligned_cols=89 Identities=36% Similarity=0.597 Sum_probs=83.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
.....||||++|..+|+|.-|...|-.||.|+.|.|+.+..+++.+|||||+|+..|+|.+||..||+.+|.|+.|.|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 025401 118 AEENRKKPS 126 (253)
Q Consensus 118 a~~~~~~~~ 126 (253)
|++.+.+..
T Consensus 87 AkP~kikeg 95 (298)
T KOG0111|consen 87 AKPEKIKEG 95 (298)
T ss_pred cCCccccCC
Confidence 998776544
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=99.61 E-value=6.3e-15 Score=100.09 Aligned_cols=72 Identities=38% Similarity=0.717 Sum_probs=66.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
+|||.|||..+++++|+++|.+||.|..+.+..+. +.+.++|||+|.+.++|+.|++.|++..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988765 6678999999999999999999999999999998873
No 29
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.60 E-value=7.8e-15 Score=121.86 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
..+.+|||+||++.+|+++|++||..||+|..|.|+.+. ...+||||+|+++++|+.||. |+|..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 346899999999999999999999999999999999874 345799999999999999997 9999999999999876
Q ss_pred ccC
Q 025401 119 EEN 121 (253)
Q Consensus 119 ~~~ 121 (253)
..-
T Consensus 79 ~~y 81 (243)
T PLN03121 79 GQY 81 (243)
T ss_pred ccc
Confidence 643
No 30
>PLN03213 repressor of silencing 3; Provisional
Probab=99.59 E-value=4.2e-15 Score=132.75 Aligned_cols=78 Identities=23% Similarity=0.366 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCH--HHHHHHHHhhCCCeecCeEEEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEP--DDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~--~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
....+||||||++.|++++|..+|..||.|..|.|+. .+| +|||||+|... .++++||..|||..|+|..|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3457899999999999999999999999999999993 466 89999999987 78999999999999999999999
Q ss_pred Eccc
Q 025401 117 FAEE 120 (253)
Q Consensus 117 ~a~~ 120 (253)
.|++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8875
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.58 E-value=6.7e-15 Score=139.71 Aligned_cols=79 Identities=25% Similarity=0.498 Sum_probs=75.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
.+|||+|||.+|||++|.++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|.|+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 3799999999999999999999999999999999998999999999999999999999999999999999999999763
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=8.1e-15 Score=122.15 Aligned_cols=81 Identities=23% Similarity=0.438 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
....+|+||||||+..++|++|.+.|..||.|.+|.|..+ +|||||.|++.|.|.+||..||+.+|.|+.++|.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 3466899999999999999999999999999999999988 6999999999999999999999999999999999
Q ss_pred EcccCCC
Q 025401 117 FAEENRK 123 (253)
Q Consensus 117 ~a~~~~~ 123 (253)
|-++...
T Consensus 234 WGKe~~~ 240 (321)
T KOG0148|consen 234 WGKEGDD 240 (321)
T ss_pred ccccCCC
Confidence 9886544
No 33
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=1.7e-14 Score=103.88 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
-+.+....|||.|||+.+|.+++.++|.+||.|..|.|-..+. .+|.|||.|++..+|.+|++.|.|..+++..|.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 3456677899999999999999999999999999999976544 4799999999999999999999999999999999
Q ss_pred EEcccC
Q 025401 116 VFAEEN 121 (253)
Q Consensus 116 ~~a~~~ 121 (253)
-+-.+.
T Consensus 90 lyyq~~ 95 (124)
T KOG0114|consen 90 LYYQPE 95 (124)
T ss_pred EecCHH
Confidence 886643
No 34
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.56 E-value=1.6e-14 Score=137.11 Aligned_cols=84 Identities=32% Similarity=0.555 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....++|||+||+..+++++|+++|++||.|+.|.|+.+ .++..+|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 345678999999999999999999999999999999988 5889999999999999999999999999999999999999
Q ss_pred cccCC
Q 025401 118 AEENR 122 (253)
Q Consensus 118 a~~~~ 122 (253)
|..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 88653
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.56 E-value=2e-14 Score=97.17 Aligned_cols=71 Identities=38% Similarity=0.665 Sum_probs=66.5
Q ss_pred EcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 46 VRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 46 V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
|+|||..+++++|+++|.+||.|..|.|..+..++.++++|||+|.+.++|+.|+..|++..|.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999998887778889999999999999999999999999999998873
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=2.2e-14 Score=134.47 Aligned_cols=76 Identities=30% Similarity=0.509 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccc--CCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQF--GAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
..++|||+||++.+++++|+++|++| |+|+.|.++ ++||||+|++.++|++||+.||+.+|+|+.|+|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 999999876 45999999999999999999999999999999999
Q ss_pred cccCCC
Q 025401 118 AEENRK 123 (253)
Q Consensus 118 a~~~~~ 123 (253)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987544
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.55 E-value=2.5e-14 Score=121.48 Aligned_cols=80 Identities=38% Similarity=0.635 Sum_probs=77.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++..+|||||+|.+.++|+.||+.|++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999999764
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.54 E-value=6.2e-14 Score=95.64 Aligned_cols=74 Identities=36% Similarity=0.680 Sum_probs=68.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
+|+|+|||..+++++|.++|..||.|..+.+..+..+ ...++|||+|.+.++|+.|++.|++..|.|..|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999877544 6689999999999999999999999999999999864
No 39
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.54 E-value=4.3e-14 Score=131.73 Aligned_cols=79 Identities=19% Similarity=0.368 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 39 DLPTSLLVRNLRH-DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 39 ~~~~~i~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
.+.++|||+||++ .+++++|.++|+.||.|..|.|+.++ +|||||+|.+.++|+.||+.|||..|.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999998763 68999999999999999999999999999999999
Q ss_pred cccCC
Q 025401 118 AEENR 122 (253)
Q Consensus 118 a~~~~ 122 (253)
++...
T Consensus 348 s~~~~ 352 (481)
T TIGR01649 348 SKQQN 352 (481)
T ss_pred ccccc
Confidence 87654
No 40
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.7e-14 Score=120.21 Aligned_cols=81 Identities=30% Similarity=0.564 Sum_probs=77.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
.-|||+.|...|+-++|++.|.+||+|.++.|+.|..|++++||+||.|.+.++|+.||+.|||..|.++.|...||+-+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q 025401 122 R 122 (253)
Q Consensus 122 ~ 122 (253)
.
T Consensus 143 p 143 (321)
T KOG0148|consen 143 P 143 (321)
T ss_pred c
Confidence 4
No 41
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=5.5e-14 Score=116.69 Aligned_cols=82 Identities=29% Similarity=0.456 Sum_probs=78.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
.+++|||-||.+++.|.-|+++|..||.|..|+|+.|..|.+++||+||.+.+.++|..||..|||..|.++.|.|.|.+
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cC
Q 025401 120 EN 121 (253)
Q Consensus 120 ~~ 121 (253)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 44
No 42
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.5e-14 Score=117.82 Aligned_cols=86 Identities=28% Similarity=0.555 Sum_probs=81.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
.+..+.|+|.-||.++|+++|+.+|...|+|+.|+|+.|+.+|++.||+||.|-+++||++||..|||..|..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 025401 118 AEENRK 123 (253)
Q Consensus 118 a~~~~~ 123 (253)
|.+...
T Consensus 118 ARPSs~ 123 (360)
T KOG0145|consen 118 ARPSSD 123 (360)
T ss_pred ccCChh
Confidence 987543
No 43
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.52 E-value=2.9e-14 Score=129.16 Aligned_cols=85 Identities=28% Similarity=0.533 Sum_probs=81.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
+.|||||||+++++++|.++|...|.|..+.++.|..+|.++||||++|.+.++|+.|++.|||.+|.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCC
Q 025401 122 RKKPS 126 (253)
Q Consensus 122 ~~~~~ 126 (253)
+....
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 65443
No 44
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.8e-14 Score=122.93 Aligned_cols=86 Identities=24% Similarity=0.363 Sum_probs=81.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.-.++.+.|||..|++.++.++|+-||+.||+|..|.|+.+..||....||||+|++.++|++|+.+|++..|++..|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccC
Q 025401 116 VFAEEN 121 (253)
Q Consensus 116 ~~a~~~ 121 (253)
.|+...
T Consensus 314 DFSQSV 319 (479)
T KOG0415|consen 314 DFSQSV 319 (479)
T ss_pred ehhhhh
Confidence 997754
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.49 E-value=1.2e-13 Score=128.69 Aligned_cols=76 Identities=14% Similarity=0.252 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh--CCCeecCeEEEEEE
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM--DGQVLLGRELTVVF 117 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l--~g~~i~g~~l~V~~ 117 (253)
+..+|||+|||+.+++++|.++|++||.|..|.|+.+ ++||||+|++.++|+.||+.| ++..|.|+.|.|+|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3578999999999999999999999999999999864 589999999999999999864 78899999999999
Q ss_pred cccC
Q 025401 118 AEEN 121 (253)
Q Consensus 118 a~~~ 121 (253)
+...
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8643
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.49 E-value=3.6e-14 Score=119.42 Aligned_cols=73 Identities=25% Similarity=0.559 Sum_probs=69.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
+.+|||+|||.++++.+|+.+|++||+|++|+|+++ ||||..++...|+.||..||+..|+|..|+|+-++.
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 357999999999999999999999999999999955 899999999999999999999999999999998887
Q ss_pred C
Q 025401 121 N 121 (253)
Q Consensus 121 ~ 121 (253)
+
T Consensus 74 K 74 (346)
T KOG0109|consen 74 K 74 (346)
T ss_pred c
Confidence 6
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=5.8e-14 Score=124.16 Aligned_cols=78 Identities=32% Similarity=0.589 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
-+.|||.||+.+|||+.|+++|.+||.|+.|..+.| ||||.|.+.++|.+||+.|||++|+|..|.|.+|++
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 357999999999999999999999999999998855 999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 025401 121 NRKKPS 126 (253)
Q Consensus 121 ~~~~~~ 126 (253)
..++..
T Consensus 331 ~~k~k~ 336 (506)
T KOG0117|consen 331 VDKKKK 336 (506)
T ss_pred hhhhcc
Confidence 765443
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.3e-13 Score=124.66 Aligned_cols=82 Identities=32% Similarity=0.592 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
.+.|+|.|||+.|.+.+|+.+|..||.|.+|.|+....++.+ |||||+|.+..+|..||+.||+.+|+|+.|-|.||-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 678999999999999999999999999999999977655555 9999999999999999999999999999999999986
Q ss_pred CCC
Q 025401 121 NRK 123 (253)
Q Consensus 121 ~~~ 123 (253)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 644
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=4.7e-14 Score=124.26 Aligned_cols=97 Identities=30% Similarity=0.596 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCC--CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 29 RGRYGGGRGRDL--PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 29 ~~~~~~~~~~~~--~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
..+.++++-... ..+|||+-|+..++|++|.++|.+||.|++|.|+.+. .+.++|||||.|.+.|.|..||+.|||.
T Consensus 110 qvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 110 QVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred eecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccc
Confidence 344455444443 7889999999999999999999999999999999985 7889999999999999999999999998
Q ss_pred e-ecC--eEEEEEEcccCCCCCC
Q 025401 107 V-LLG--RELTVVFAEENRKKPS 126 (253)
Q Consensus 107 ~-i~g--~~l~V~~a~~~~~~~~ 126 (253)
. +.| .+|.|.||..++.+..
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred eeeccCCCceEEEecccCCCchH
Confidence 4 444 6899999998877654
No 50
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.45 E-value=6.2e-13 Score=87.36 Aligned_cols=56 Identities=34% Similarity=0.695 Sum_probs=51.1
Q ss_pred HHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 58 IRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 58 L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
|.++|++||+|..|.+..+. .++|||+|.+.++|+.|++.|||..|.|+.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997653 589999999999999999999999999999999986
No 51
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.43 E-value=1.1e-12 Score=115.89 Aligned_cols=79 Identities=25% Similarity=0.438 Sum_probs=72.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhc-ccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFE-QFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
...|||+|||+++.|++|+++|. +.|+|++|.|+.+. .++.+|||.|||+++|.+++|++.||.+++.|++|+|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 34599999999999999999995 78999999999884 89999999999999999999999999999999999998655
Q ss_pred c
Q 025401 120 E 120 (253)
Q Consensus 120 ~ 120 (253)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=5.7e-13 Score=120.50 Aligned_cols=84 Identities=29% Similarity=0.460 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh-----CC-CeecCe
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM-----DG-QVLLGR 111 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l-----~g-~~i~g~ 111 (253)
...+.||||.|||+++|+++|.++|.+||+|.++.|+.++.|+.++|.|||.|.++.+|+.||... .| ..|+|+
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 355689999999999999999999999999999999999999999999999999999999999965 33 678899
Q ss_pred EEEEEEcccC
Q 025401 112 ELTVVFAEEN 121 (253)
Q Consensus 112 ~l~V~~a~~~ 121 (253)
.|.|..|-..
T Consensus 369 ~Lkv~~Av~R 378 (678)
T KOG0127|consen 369 LLKVTLAVTR 378 (678)
T ss_pred EEeeeeccch
Confidence 9999987754
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=99.42 E-value=8.9e-13 Score=90.76 Aligned_cols=61 Identities=31% Similarity=0.503 Sum_probs=54.7
Q ss_pred HHHHHHHhc----ccCCeeEEE-EcccCCC--CCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 55 PEDIRRPFE----QFGAIKDIY-LPRDYYS--GEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 55 e~~L~~~F~----~~G~v~~v~-i~~~~~~--g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
+++|+++|. +||.|..|. |+.++.+ +..+|||||+|.+.++|++||..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999985 6666555 889999999999999999999999999999999976
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.42 E-value=2.8e-13 Score=122.64 Aligned_cols=80 Identities=36% Similarity=0.625 Sum_probs=76.0
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccCCC
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEENRK 123 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~~~ 123 (253)
|||+||..++++++|..+|+.||.|+.|.+.++..||.++||+||+|.+.++|.+|+++|||.+|.|+.|+|...++...
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999988775544
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.9e-13 Score=118.51 Aligned_cols=88 Identities=25% Similarity=0.497 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC-eecC--eEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ-VLLG--REL 113 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~-~i~g--~~l 113 (253)
++....+|||+-||..++|.||.++|++||.|.+|.|++|+.|+..+|||||.|.+.++|.+|+.+||+. .|-| +.|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3355568999999999999999999999999999999999999999999999999999999999999887 4444 678
Q ss_pred EEEEcccCCCC
Q 025401 114 TVVFAEENRKK 124 (253)
Q Consensus 114 ~V~~a~~~~~~ 124 (253)
.|.+|......
T Consensus 110 qvk~Ad~E~er 120 (510)
T KOG0144|consen 110 QVKYADGERER 120 (510)
T ss_pred eecccchhhhc
Confidence 88888766554
No 56
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=2.5e-13 Score=113.17 Aligned_cols=87 Identities=22% Similarity=0.332 Sum_probs=81.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+.+.+|.|||-.||.+..+.||.++|-.||.|+..++..|..|..+++|+||.|+++..|+.||..|||..|+-+.|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCC
Q 025401 116 VFAEENR 122 (253)
Q Consensus 116 ~~a~~~~ 122 (253)
++..++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9876554
No 57
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=4.9e-13 Score=112.66 Aligned_cols=81 Identities=23% Similarity=0.514 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....++|+|+||.+.++.++|++.|++||.|++|+|+. +|+||.|+-.++|..||..||+.+|.|+.|+|++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 35678999999999999999999999999999999985 4999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 025401 118 AEENRKKPS 126 (253)
Q Consensus 118 a~~~~~~~~ 126 (253)
++..-....
T Consensus 147 stsrlrtap 155 (346)
T KOG0109|consen 147 STSRLRTAP 155 (346)
T ss_pred eccccccCC
Confidence 886654433
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=4.1e-13 Score=116.22 Aligned_cols=76 Identities=34% Similarity=0.622 Sum_probs=74.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
|.||||.|.+++.|+.|...|..||+|..|.|.+++.|++++|||||||+-+|.|+.|++.|||..++|+.|+|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999874
No 59
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.33 E-value=4.7e-12 Score=102.07 Aligned_cols=85 Identities=21% Similarity=0.404 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccc-CCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQF-GAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
+......+||..||..+.+.+|..+|.+| |.|..+.+..++-||.++|||||+|++++.|+.|.+.||+..|+++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34455679999999999999999999988 67778888899999999999999999999999999999999999999999
Q ss_pred EEcccC
Q 025401 116 VFAEEN 121 (253)
Q Consensus 116 ~~a~~~ 121 (253)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 987765
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.30 E-value=6.8e-12 Score=117.71 Aligned_cols=73 Identities=15% Similarity=0.268 Sum_probs=60.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccc------------CCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCe
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQF------------GAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQV 107 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~------------G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 107 (253)
...+|||+|||+.||+++|++||.+| +.|..|.+.. .+|||||+|.+.++|+.||. |+|+.
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~------~kg~afVeF~~~e~A~~Al~-l~g~~ 246 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK------EKNFAFLEFRTVEEATFAMA-LDSII 246 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC------CCCEEEEEeCCHHHHhhhhc-CCCeE
Confidence 35689999999999999999999975 2344444433 37899999999999999996 99999
Q ss_pred ecCeEEEEEEcc
Q 025401 108 LLGRELTVVFAE 119 (253)
Q Consensus 108 i~g~~l~V~~a~ 119 (253)
|.|..|.|....
T Consensus 247 ~~g~~l~v~r~~ 258 (509)
T TIGR01642 247 YSNVFLKIRRPH 258 (509)
T ss_pred eeCceeEecCcc
Confidence 999999987543
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.28 E-value=7.2e-12 Score=99.11 Aligned_cols=90 Identities=30% Similarity=0.500 Sum_probs=80.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKD-IYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
..-+.+..|||+||.+.++|..|.++|..||.|.. ..|+.+..|+..++||||.|++.+.+.+||..|||..+....|.
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 34455688999999999999999999999998764 47788888999999999999999999999999999999999999
Q ss_pred EEEcccCCCCC
Q 025401 115 VVFAEENRKKP 125 (253)
Q Consensus 115 V~~a~~~~~~~ 125 (253)
|.++..+..+.
T Consensus 171 v~ya~k~~~kg 181 (203)
T KOG0131|consen 171 VSYAFKKDTKG 181 (203)
T ss_pred EEEEEecCCCc
Confidence 99998766544
No 62
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.25 E-value=1.4e-11 Score=115.44 Aligned_cols=79 Identities=25% Similarity=0.461 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
.+|||||+|+.+|+|.+|..+|+.||+|+.|.|+.. .+||||.+...++|++||.+|.+..|.++.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 478999999999999999999999999999998765 79999999999999999999999999999999999998
Q ss_pred CCCCC
Q 025401 121 NRKKP 125 (253)
Q Consensus 121 ~~~~~ 125 (253)
...+.
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 77766
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.24 E-value=2.4e-11 Score=99.40 Aligned_cols=82 Identities=27% Similarity=0.519 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----HhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRR----PFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~----~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
.+..||||.||+..+..++|+. +|++||.|++|.+.. +.+.+|-|||.|.+.+.|-.|+..|+|..|.|+.|.
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4445999999999999998877 999999999988763 566789999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 025401 115 VVFAEENRK 123 (253)
Q Consensus 115 V~~a~~~~~ 123 (253)
|+||+.+..
T Consensus 84 iqyA~s~sd 92 (221)
T KOG4206|consen 84 IQYAKSDSD 92 (221)
T ss_pred eecccCccc
Confidence 999986543
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.19 E-value=5.7e-11 Score=105.15 Aligned_cols=76 Identities=26% Similarity=0.485 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....|+|||.|||.++||+.|++-|..||.|.++.|+. .++.+| .|.|.++++|+.|+..|+|..|+|+.|+|.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 35578999999999999999999999999999999853 455554 8999999999999999999999999999987
Q ss_pred c
Q 025401 118 A 118 (253)
Q Consensus 118 a 118 (253)
+
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 4
No 65
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=6.5e-11 Score=102.11 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=70.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh-hCCCeecCeEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH-MDGQVLLGRELT 114 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~-l~g~~i~g~~l~ 114 (253)
+.+..-++|||++|...++|.+|.++|.+||+|..|.++.. +++|||+|.+.+.|+.|.++ ++...|+|..|+
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 34455678999999999999999999999999999999876 57999999999999988776 676789999999
Q ss_pred EEEccc
Q 025401 115 VVFAEE 120 (253)
Q Consensus 115 V~~a~~ 120 (253)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999887
No 66
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=6.5e-11 Score=106.35 Aligned_cols=79 Identities=24% Similarity=0.518 Sum_probs=72.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccCC
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEENR 122 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~~ 122 (253)
.|||.||+..++..+|.++|..||+|+.|.|+.+. .| .+|| ||+|++++.|++||+.|||..+.++.|.|..+....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 39999999999999999999999999999999885 34 8999 999999999999999999999999999998877655
Q ss_pred CC
Q 025401 123 KK 124 (253)
Q Consensus 123 ~~ 124 (253)
..
T Consensus 155 er 156 (369)
T KOG0123|consen 155 ER 156 (369)
T ss_pred hh
Confidence 43
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=7.4e-11 Score=109.88 Aligned_cols=80 Identities=31% Similarity=0.556 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCC---CCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSG---EPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
..++|||.||++.++.++|..+|.++|.|..|.|...+... .+.|||||+|.++++|+.|++.|+|+.|+|+.|.|.
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34559999999999999999999999999999887654221 245999999999999999999999999999999999
Q ss_pred Ecc
Q 025401 117 FAE 119 (253)
Q Consensus 117 ~a~ 119 (253)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 988
No 68
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.16 E-value=1.5e-10 Score=97.30 Aligned_cols=85 Identities=25% Similarity=0.384 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
..-+++|+|.||++.|++++|+++|..||.+..+.|.++. .|...|.|-|.|...++|+.||+.||++.|+|..|+++.
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3345889999999999999999999999988888888775 788899999999999999999999999999999999988
Q ss_pred cccCCC
Q 025401 118 AEENRK 123 (253)
Q Consensus 118 a~~~~~ 123 (253)
......
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 765433
No 69
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=2.5e-11 Score=100.01 Aligned_cols=72 Identities=33% Similarity=0.623 Sum_probs=67.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
..|||++||+.+.+.+|+.||.+||.|..|.|. .||+||+|+++.+|..||..||+.+|.+..|.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999999886 578999999999999999999999999999999998854
No 70
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.15 E-value=9.1e-11 Score=106.86 Aligned_cols=86 Identities=22% Similarity=0.378 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
...+..|||.+|...+...+|+.||.+||+|+-..|+.+.-+....+|+||++.+.++|.+||..||-++|.|+.|.|+-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34567899999999999999999999999999999998877777889999999999999999999999999999999998
Q ss_pred cccCCC
Q 025401 118 AEENRK 123 (253)
Q Consensus 118 a~~~~~ 123 (253)
++....
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 875443
No 71
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=7.4e-10 Score=88.03 Aligned_cols=92 Identities=22% Similarity=0.338 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHH
Q 025401 19 YGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98 (253)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 98 (253)
++++++++.+++...+.+.......|+|.+||+...|++|++++.+.|+|++..+..+ |++.|+|...|+++.
T Consensus 93 y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkY 165 (241)
T KOG0105|consen 93 YSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKY 165 (241)
T ss_pred cCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHH
Confidence 3444444333333344455566788999999999999999999999999999998876 589999999999999
Q ss_pred HHHhhCCCeec--CeEEEEEE
Q 025401 99 AKRHMDGQVLL--GRELTVVF 117 (253)
Q Consensus 99 Al~~l~g~~i~--g~~l~V~~ 117 (253)
||.+|+...+. |....|.+
T Consensus 166 Avr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 166 AVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred HHHhhccccccCcCcEeeEEe
Confidence 99999988766 44444443
No 72
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=99.11 E-value=1.9e-10 Score=99.82 Aligned_cols=105 Identities=25% Similarity=0.352 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCee--------EEEEcccCCCCCCceEEEEE
Q 025401 18 GYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIK--------DIYLPRDYYSGEPRGFGFIQ 89 (253)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~~~g~~~g~afV~ 89 (253)
++++++....+..-...........+|||-+|+..+++++|.++|.++|.|. .|.|.+++.|+..++-|.|.
T Consensus 43 g~~gg~m~~g~~~~~~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS 122 (351)
T KOG1995|consen 43 GYGGGPMSSGNRGDASSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVS 122 (351)
T ss_pred CCCCCCcCCCCCcCcCccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeee
Confidence 3443333333333334444566678999999999999999999999999884 46777888899999999999
Q ss_pred EcCHHHHHHHHHhhCCCeecCeEEEEEEcccCC
Q 025401 90 FVEPDDAAEAKRHMDGQVLLGRELTVVFAEENR 122 (253)
Q Consensus 90 f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~~ 122 (253)
|++...|++||..|++..|.+..|+|.+|....
T Consensus 123 ~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 123 YEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred ecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 999999999999999999999999998887654
No 73
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.5e-10 Score=100.53 Aligned_cols=81 Identities=27% Similarity=0.335 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
..-+.|||..+.+++.|+||+..|+.||+|+.|.|...+.++.++||+||||.+.+....||..||-..|+|+.|.|--+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 34578999999999999999999999999999999999988899999999999999999999999999999999998754
Q ss_pred c
Q 025401 119 E 119 (253)
Q Consensus 119 ~ 119 (253)
.
T Consensus 288 v 288 (544)
T KOG0124|consen 288 V 288 (544)
T ss_pred c
Confidence 4
No 74
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=2.9e-10 Score=93.79 Aligned_cols=75 Identities=29% Similarity=0.450 Sum_probs=66.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE
Q 025401 33 GGGRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE 112 (253)
Q Consensus 33 ~~~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 112 (253)
....+....+.|+|.||+..+.|++|.++|.++|.+....+. .+++||+|..+++|..||..|++..|.++.
T Consensus 91 ~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~ 162 (216)
T KOG0106|consen 91 RYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRR 162 (216)
T ss_pred ccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCce
Confidence 345667788999999999999999999999999999555542 468999999999999999999999999999
Q ss_pred EEE
Q 025401 113 LTV 115 (253)
Q Consensus 113 l~V 115 (253)
|.|
T Consensus 163 l~~ 165 (216)
T KOG0106|consen 163 ISV 165 (216)
T ss_pred eee
Confidence 999
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=8e-11 Score=109.65 Aligned_cols=84 Identities=32% Similarity=0.649 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...+.|+|.|||+..+..+|++||..||.|..|.|+.....+...|||||+|-++.+|..|+.+|..+.|.|+.|+++||
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 44578999999999999999999999999999999887556778999999999999999999999999999999999999
Q ss_pred ccCC
Q 025401 119 EENR 122 (253)
Q Consensus 119 ~~~~ 122 (253)
+...
T Consensus 691 ~~d~ 694 (725)
T KOG0110|consen 691 KSDN 694 (725)
T ss_pred ccch
Confidence 8654
No 76
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.08 E-value=1.3e-10 Score=101.42 Aligned_cols=82 Identities=28% Similarity=0.473 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
..++|||++|++.++++.|+++|.+||+|.+|.|+.++.++..+||+||+|++.+.+..+|. ...+.|+|+.|.++-|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999998888877 46678899999888777
Q ss_pred cCC
Q 025401 120 ENR 122 (253)
Q Consensus 120 ~~~ 122 (253)
+..
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 554
No 77
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.07 E-value=5.3e-10 Score=97.82 Aligned_cols=73 Identities=16% Similarity=0.318 Sum_probs=58.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCC---CCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYS---GEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
.|.|.||.+.++.++|+.||..+|+|.++.|+.+... ....-.|||.|.+.+.+..|.. |.+++|-+..|.|-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 7999999999999999999999999999988754322 2345789999999999988877 56665555555443
No 78
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.7e-10 Score=96.48 Aligned_cols=83 Identities=28% Similarity=0.517 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec-C--eEEEEE
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL-G--RELTVV 116 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g--~~l~V~ 116 (253)
...+||||.|...-.|+|+..+|..||.|++|.++... ++..+|||||.|.+..+|+.||..|||..-+ | ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 34679999999999999999999999999999998874 7889999999999999999999999997544 4 578999
Q ss_pred EcccCCC
Q 025401 117 FAEENRK 123 (253)
Q Consensus 117 ~a~~~~~ 123 (253)
|+...+.
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9886654
No 79
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.06 E-value=1.1e-09 Score=79.59 Aligned_cols=80 Identities=20% Similarity=0.409 Sum_probs=71.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcc--cCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec----CeEEEE
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQ--FGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL----GRELTV 115 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~----g~~l~V 115 (253)
|||.|.|||...+.++|.+++.. .|....+.|+.|..++.+.|||||.|.+++.|....+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999988864 367788999999889999999999999999999999999999886 567888
Q ss_pred EEcccC
Q 025401 116 VFAEEN 121 (253)
Q Consensus 116 ~~a~~~ 121 (253)
.||.-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888754
No 80
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.06 E-value=3e-10 Score=99.11 Aligned_cols=85 Identities=27% Similarity=0.422 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
...+|||++||.++++++|+++|.+||.|..+.|+.+..+...++|+||+|.+++.+.+++. +.-+.|+++.|.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 45689999999999999999999999999999999999999999999999999999998887 68889999999999988
Q ss_pred cCCCCC
Q 025401 120 ENRKKP 125 (253)
Q Consensus 120 ~~~~~~ 125 (253)
++....
T Consensus 175 pk~~~~ 180 (311)
T KOG4205|consen 175 PKEVMQ 180 (311)
T ss_pred chhhcc
Confidence 776544
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.05 E-value=3e-10 Score=95.59 Aligned_cols=83 Identities=27% Similarity=0.492 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
......|||+|+.+.+|.++|+.+|+.||.|..|.|+.++..+++++||||+|.+.+.++.||+ ||+..|.+..|+|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456789999999999999999999999999999999999899999999999999999999999 999999999999998
Q ss_pred cccC
Q 025401 118 AEEN 121 (253)
Q Consensus 118 a~~~ 121 (253)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7765
No 82
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.03 E-value=1.6e-09 Score=98.00 Aligned_cols=85 Identities=26% Similarity=0.374 Sum_probs=71.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 35 GRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 35 ~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
..+.....+|||.|||.++++.+|+++|..||.|+...|......++..+||||+|.+.++++.||++ +-..|+++.|.
T Consensus 282 ~~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~ 360 (419)
T KOG0116|consen 282 QEPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLN 360 (419)
T ss_pred cceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEE
Confidence 34555566799999999999999999999999999887765433344449999999999999999995 68899999999
Q ss_pred EEEccc
Q 025401 115 VVFAEE 120 (253)
Q Consensus 115 V~~a~~ 120 (253)
|+....
T Consensus 361 Veek~~ 366 (419)
T KOG0116|consen 361 VEEKRP 366 (419)
T ss_pred EEeccc
Confidence 997554
No 83
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=7.5e-10 Score=99.51 Aligned_cols=74 Identities=26% Similarity=0.470 Sum_probs=69.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
..|||| ++||+.+|.++|..+|.|+.|.|+.+. | +.|||||.|.++++|+.||+.||...|.|+.|.|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999997 6 8999999999999999999999999999999999998754
No 84
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1.4e-10 Score=94.40 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
.+...||||+||...|+|+.|.++|-+.|+|..|.|.... .++.+ ||||+|+++..+..|++.|||..|.+..|+|++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4556789999999999999999999999999999998775 45555 999999999999999999999999999998887
Q ss_pred cc
Q 025401 118 AE 119 (253)
Q Consensus 118 a~ 119 (253)
-.
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 44
No 85
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.00 E-value=2.7e-09 Score=87.19 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcc-cCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec---CeEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPR-DYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL---GREL 113 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~-~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~---g~~l 113 (253)
...-.||||.+||.+|...+|..+|..|-..+.+.|.. ++....++-+|||+|.+.++|++|+..|||+.|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34457999999999999999999999997777666644 3333446689999999999999999999999998 7899
Q ss_pred EEEEcccCCC
Q 025401 114 TVVFAEENRK 123 (253)
Q Consensus 114 ~V~~a~~~~~ 123 (253)
+|++|+...+
T Consensus 111 hiElAKSNtK 120 (284)
T KOG1457|consen 111 HIELAKSNTK 120 (284)
T ss_pred EeeehhcCcc
Confidence 9999997654
No 86
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.98 E-value=1.7e-09 Score=93.34 Aligned_cols=85 Identities=24% Similarity=0.317 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCee--------EEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIK--------DIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
...++.|||.|||.++|.+++.++|.+||.|. .|.|..+. .|+.+|-|+|.|...+.++.||+.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34567799999999999999999999999875 35666664 5899999999999999999999999999999
Q ss_pred CeEEEEEEcccCCC
Q 025401 110 GRELTVVFAEENRK 123 (253)
Q Consensus 110 g~~l~V~~a~~~~~ 123 (253)
|+.|.|+.|+...+
T Consensus 210 g~~~rVerAkfq~K 223 (382)
T KOG1548|consen 210 GKKLRVERAKFQMK 223 (382)
T ss_pred CcEEEEehhhhhhc
Confidence 99999999886544
No 87
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.85 E-value=9.5e-09 Score=95.95 Aligned_cols=85 Identities=22% Similarity=0.405 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCC---CCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYS---GEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGREL 113 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 113 (253)
.++..+.|||+||++.|++++|...|..||+|..|.|++.... .....|+||.|-+..+|+.|++.|+|..|.+..|
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 3566788999999999999999999999999999998865422 2345789999999999999999999999999999
Q ss_pred EEEEcccC
Q 025401 114 TVVFAEEN 121 (253)
Q Consensus 114 ~V~~a~~~ 121 (253)
++.|++..
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99998654
No 88
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.82 E-value=4.4e-08 Score=85.59 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCC-----------------
Q 025401 18 GYGRRGRSPSPRGRYGGGRGR--DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY----------------- 78 (253)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~----------------- 78 (253)
|++++|.++....+.....+. .+...|+|.+|-..++|.+|.+.++.||.|..|.++..+.
T Consensus 6 gg~ggg~g~~~~~~e~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vn 85 (494)
T KOG1456|consen 6 GGHGGGDGPKRYRREDNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVN 85 (494)
T ss_pred CCCCCCCCCccCCcccCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhhee
Confidence 333333334333333333443 3456799999999999999999999999998876542210
Q ss_pred ---------------------------------------------------------------------CCCCceEEEEE
Q 025401 79 ---------------------------------------------------------------------SGEPRGFGFIQ 89 (253)
Q Consensus 79 ---------------------------------------------------------------------~g~~~g~afV~ 89 (253)
-.++--.|+||
T Consensus 86 faa~n~i~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVE 165 (494)
T KOG1456|consen 86 FAADNQIYIAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVE 165 (494)
T ss_pred hhccCcccccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEe
Confidence 00111268999
Q ss_pred EcCHHHHHHHHHhhCCCeec--CeEEEEEEcccCCC
Q 025401 90 FVEPDDAAEAKRHMDGQVLL--GRELTVVFAEENRK 123 (253)
Q Consensus 90 f~~~~~a~~Al~~l~g~~i~--g~~l~V~~a~~~~~ 123 (253)
|++.+.|++|.+.|||..|. -..|+|+||++.+-
T Consensus 166 Fdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 166 FDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred echhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 99999999999999999887 36899999998654
No 89
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=4e-09 Score=96.17 Aligned_cols=71 Identities=24% Similarity=0.445 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
...-+|+|.|||..|++++|..+|+.||+|..|..-.. ..+.+||+|.|+-+|+.|+++|++.+|.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 44568999999999999999999999999999776444 478999999999999999999999999999887
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=5.6e-09 Score=95.78 Aligned_cols=88 Identities=23% Similarity=0.424 Sum_probs=81.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....+.|||++||..+++.++.+++..||.+..+.++.+..++.++||||.+|.+......|+..|||+.+.+..|+|+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 35567899999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cccCCCCC
Q 025401 118 AEENRKKP 125 (253)
Q Consensus 118 a~~~~~~~ 125 (253)
|-......
T Consensus 366 A~~g~~~~ 373 (500)
T KOG0120|consen 366 AIVGASNA 373 (500)
T ss_pred hhccchhc
Confidence 88765544
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.76 E-value=2.9e-08 Score=89.42 Aligned_cols=81 Identities=21% Similarity=0.370 Sum_probs=68.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
+......|.|.+|||.+|++||.+||+.+ .|+.+.+... +|++.|-|||||+++|++++||+ ++-..+..+-|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 34456678899999999999999999998 5777666554 78899999999999999999999 68888888889887
Q ss_pred EcccC
Q 025401 117 FAEEN 121 (253)
Q Consensus 117 ~a~~~ 121 (253)
.+...
T Consensus 82 ~~~~~ 86 (510)
T KOG4211|consen 82 TAGGA 86 (510)
T ss_pred ccCCc
Confidence 76543
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.71 E-value=8.1e-08 Score=84.81 Aligned_cols=79 Identities=23% Similarity=0.435 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 41 PTSLLVRNLRHD-CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 41 ~~~i~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
.+.|.|.||... ||.+.|..+|..||+|..|.|+.++ +-.|+|+|.+...|+.|++.|+|..|.|+.|.|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 578999999865 9999999999999999999999875 4579999999999999999999999999999999988
Q ss_pred cCCCC
Q 025401 120 ENRKK 124 (253)
Q Consensus 120 ~~~~~ 124 (253)
-....
T Consensus 372 H~~vq 376 (492)
T KOG1190|consen 372 HTNVQ 376 (492)
T ss_pred Ccccc
Confidence 65443
No 93
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.57 E-value=6.9e-08 Score=80.43 Aligned_cols=80 Identities=23% Similarity=0.483 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
.+....||.+.|-.+++.+.|-..|.+|-......++.++-|++.+||+||.|.+.+++..|+..|+|..++.+.|++.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34567899999999999999999999998888889999999999999999999999999999999999999999987653
No 94
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.57 E-value=3e-07 Score=64.18 Aligned_cols=71 Identities=25% Similarity=0.506 Sum_probs=48.6
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 42 TSLLVRNLRHDCRPED----IRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~----L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
+.|+|.|||.+.+... |++++..+| .|..|. .+.|+|.|.+++.|+.|++.|+|..+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988765 567777886 565542 3579999999999999999999999999999999
Q ss_pred EcccCC
Q 025401 117 FAEENR 122 (253)
Q Consensus 117 ~a~~~~ 122 (253)
|.....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 986443
No 95
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.56 E-value=7.8e-07 Score=77.91 Aligned_cols=83 Identities=17% Similarity=0.293 Sum_probs=73.7
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 36 RGRDLPTSLLVRNLRHD-CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
.+..+++.+.|-+|... ++-+.|..+|..||.|+.|.+++.+ .|.|+||+.+..+.+.||..||+..+.|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 34567889999999876 7788899999999999999998765 68899999999999999999999999999999
Q ss_pred EEEcccCCC
Q 025401 115 VVFAEENRK 123 (253)
Q Consensus 115 V~~a~~~~~ 123 (253)
|.+++..-.
T Consensus 357 v~~SkQ~~v 365 (494)
T KOG1456|consen 357 VCVSKQNFV 365 (494)
T ss_pred Eeecccccc
Confidence 999886544
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.54 E-value=1.6e-07 Score=69.58 Aligned_cols=71 Identities=25% Similarity=0.449 Sum_probs=45.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC-----eecCeEEEE
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ-----VLLGRELTV 115 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~-----~i~g~~l~V 115 (253)
++.|+|.+|+..++.++|+++|..||.|.+|.+... ...|||-|.+.+.|+.|++.+... .|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 467999999999999999999999999999999765 247999999999999999876433 566666666
Q ss_pred EE
Q 025401 116 VF 117 (253)
Q Consensus 116 ~~ 117 (253)
.+
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 97
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.48 E-value=1e-06 Score=82.59 Aligned_cols=75 Identities=24% Similarity=0.330 Sum_probs=65.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
.|-|.|+|++|+.+||.+||..|-.+-.-.++.-.+.|+..|-|.|.|++.++|..|+..|++..|..++|.|.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 788999999999999999999997665433334446899999999999999999999999999999999998865
No 98
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.48 E-value=6.3e-07 Score=73.66 Aligned_cols=79 Identities=23% Similarity=0.405 Sum_probs=69.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec-CeEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL-GRELT 114 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g~~l~ 114 (253)
.+..+..+||+.|||..++.+.|..+|.+|.....|.++... .+.|||+|.+...|..|...|++..|- ...|.
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~ 215 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ 215 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEE
Confidence 345667889999999999999999999999999999888654 689999999999999999999999888 88888
Q ss_pred EEEcc
Q 025401 115 VVFAE 119 (253)
Q Consensus 115 V~~a~ 119 (253)
|.+++
T Consensus 216 i~~a~ 220 (221)
T KOG4206|consen 216 ITFAK 220 (221)
T ss_pred ecccC
Confidence 88775
No 99
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.45 E-value=1.9e-07 Score=76.56 Aligned_cols=64 Identities=20% Similarity=0.502 Sum_probs=53.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
.||||.||..+|+|++|+.+|..|-...-+.|... .| -.+|||+|++.+.|..|+..|+|..|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 57999999999999999999999987666665432 22 458999999999999999999998764
No 100
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.42 E-value=7.3e-08 Score=87.96 Aligned_cols=84 Identities=21% Similarity=0.428 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
...|||+-.|...++..+|.+||..+|.|..|.|+.+..++..+|.|||+|.+.+.+..||. |.|..+.|.+|.|+...
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 34678888999999999999999999999999999999999999999999999999999997 99999999999999876
Q ss_pred cCCCC
Q 025401 120 ENRKK 124 (253)
Q Consensus 120 ~~~~~ 124 (253)
..+..
T Consensus 257 aeknr 261 (549)
T KOG0147|consen 257 AEKNR 261 (549)
T ss_pred HHHHH
Confidence 55544
No 101
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.35 E-value=1.5e-06 Score=78.68 Aligned_cols=79 Identities=28% Similarity=0.381 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKD-IYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....+|-|.+||+.||++||.+||+..-.|.. |.|+.+. .+.+.|-|||+|++.+.|++||. -|...|.-+-|.|..
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeeh
Confidence 34567999999999999999999998755544 4455553 56688999999999999999999 477788888888876
Q ss_pred cc
Q 025401 118 AE 119 (253)
Q Consensus 118 a~ 119 (253)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 54
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.32 E-value=1.2e-06 Score=75.75 Aligned_cols=80 Identities=24% Similarity=0.399 Sum_probs=63.2
Q ss_pred CCeEEEcCCCCCCCHHH----H--HHHhcccCCeeEEEEcccCCC-CCCceE--EEEEEcCHHHHHHHHHhhCCCeecCe
Q 025401 41 PTSLLVRNLRHDCRPED----I--RRPFEQFGAIKDIYLPRDYYS-GEPRGF--GFIQFVEPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~----L--~~~F~~~G~v~~v~i~~~~~~-g~~~g~--afV~f~~~~~a~~Al~~l~g~~i~g~ 111 (253)
.+-|||-+|++.+..++ | .++|.+||.|..|.|...... ....+. .||+|...++|..||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999877665 3 589999999999988654311 111222 39999999999999999999999999
Q ss_pred EEEEEEccc
Q 025401 112 ELTVVFAEE 120 (253)
Q Consensus 112 ~l~V~~a~~ 120 (253)
.|++.|.+.
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988653
No 103
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=2e-06 Score=78.95 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=64.5
Q ss_pred CCCeEEEcCCCCCCC------HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec-CeE
Q 025401 40 LPTSLLVRNLRHDCR------PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL-GRE 112 (253)
Q Consensus 40 ~~~~i~V~nLp~~~t------e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g~~ 112 (253)
....|+|.|+|.--. ..-|..+|+++|+|+.+.++.+..+| ++||+|++|++..+|+.|++.|||+.|+ .+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 346799999986422 23467889999999999999886555 8999999999999999999999999888 677
Q ss_pred EEEEEcc
Q 025401 113 LTVVFAE 119 (253)
Q Consensus 113 l~V~~a~ 119 (253)
+.|..-+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 7776543
No 104
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.24 E-value=4.8e-06 Score=60.95 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=53.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccC-------CCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCe
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDY-------YSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-------~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 111 (253)
...+.|.|.++|+. ....|.++|++||+|++..-+... .......+..|.|++..+|++||. .||..|.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 34567899999988 556788899999999876411100 001124689999999999999999 699999986
Q ss_pred EE-EEEEccc
Q 025401 112 EL-TVVFAEE 120 (253)
Q Consensus 112 ~l-~V~~a~~ 120 (253)
.| -|.++++
T Consensus 82 ~mvGV~~~~~ 91 (100)
T PF05172_consen 82 LMVGVKPCDP 91 (100)
T ss_dssp EEEEEEE-HH
T ss_pred EEEEEEEcHH
Confidence 54 5777653
No 105
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.24 E-value=2.8e-07 Score=81.02 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=58.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
.||+|++|+..+...+|.++|..+|+|....|.. +...-+|.|+|........|+. ++|.++.-+...+...++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 5689999999999999999999999998777653 3345678899999999999998 6888877544444443333
No 106
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.22 E-value=8.3e-07 Score=77.21 Aligned_cols=84 Identities=24% Similarity=0.415 Sum_probs=74.8
Q ss_pred CCCCeEE-EcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 39 DLPTSLL-VRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 39 ~~~~~i~-V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....+|| |++|+..+++++|+.+|..+|.|..+.+..+..++.++|||||+|.+...+..|+.. +...|.+..|.|.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445566 999999999999999999999999999999999999999999999999999999986 88899999999988
Q ss_pred cccCCC
Q 025401 118 AEENRK 123 (253)
Q Consensus 118 a~~~~~ 123 (253)
..+...
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 775543
No 107
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.15 E-value=1.7e-06 Score=75.22 Aligned_cols=76 Identities=14% Similarity=0.268 Sum_probs=66.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFG--AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
..++|||||-|.+|++||.+.+...| .|.++++..+..+|+++|||+|...+....++.++.|...+|.|+.-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 35799999999999999999888776 56677788888899999999999999999999999999999999865554
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.14 E-value=5.8e-06 Score=53.43 Aligned_cols=53 Identities=28% Similarity=0.511 Sum_probs=43.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHH
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 100 (253)
++.|-|.+++....+. |..+|..||+|+.+.+... ..++||.|.+..+|+.||
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 3678999999876655 5558889999999988632 458999999999999985
No 109
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.07 E-value=1.5e-06 Score=72.79 Aligned_cols=70 Identities=17% Similarity=0.344 Sum_probs=57.0
Q ss_pred HHHHHHhc-ccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccCCCCCC
Q 025401 56 EDIRRPFE-QFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEENRKKPS 126 (253)
Q Consensus 56 ~~L~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~~~~~~ 126 (253)
++|...|. +||+|+++.|..+ ..-+..|.+||.|...++|++|++.||+..|.|++|.+++......+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea 153 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREA 153 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhh
Confidence 34444455 8999999876544 3455678999999999999999999999999999999999887766544
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=1.3e-05 Score=73.08 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=61.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhc-ccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFE-QFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
.+-++..|||||+||--++.++|..||. .||.|+.+-|-.|+.-+-++|-|=|+|.+...-.+||.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4567889999999999999999999998 899999999998877888999999999999999999875
No 111
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.02 E-value=1.6e-05 Score=73.46 Aligned_cols=66 Identities=24% Similarity=0.563 Sum_probs=54.0
Q ss_pred HHHHHhcccCCeeEEEEcccCCC---CCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccCC
Q 025401 57 DIRRPFEQFGAIKDIYLPRDYYS---GEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEENR 122 (253)
Q Consensus 57 ~L~~~F~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~~ 122 (253)
+|+..+.+||.|..|.|+....+ .-..|..||+|++.++|+.|++.|+|.+|.+++|++.|..+.+
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 34455678999999999876322 2245789999999999999999999999999999999876554
No 112
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.98 E-value=1.4e-05 Score=70.37 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCC-eeE--EEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGA-IKD--IYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~-v~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
.....+|-+.+||+..+.++|.+||..|.. |.. |.|+.+ ..|.+.|-|||+|.++|+|..|+...+.+....+.|.
T Consensus 277 ~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 277 TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 344668999999999999999999999874 333 677766 3788899999999999999999999888888888888
Q ss_pred EEEcc
Q 025401 115 VVFAE 119 (253)
Q Consensus 115 V~~a~ 119 (253)
|-.+.
T Consensus 356 vfp~S 360 (508)
T KOG1365|consen 356 VFPCS 360 (508)
T ss_pred Eeecc
Confidence 87654
No 113
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.95 E-value=4.3e-06 Score=69.96 Aligned_cols=71 Identities=18% Similarity=0.364 Sum_probs=60.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCC--------CCC----ceEEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYS--------GEP----RGFGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~--------g~~----~g~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
-.|||++||+.+...-|.+||..||.|-.|.|.....+ +.+ ---++|||.+...|..+...||+..|.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 47999999999999999999999999999998765443 222 234689999999999999999999999
Q ss_pred CeE
Q 025401 110 GRE 112 (253)
Q Consensus 110 g~~ 112 (253)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 874
No 114
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.94 E-value=3.1e-05 Score=67.46 Aligned_cols=77 Identities=22% Similarity=0.444 Sum_probs=61.8
Q ss_pred CCCCeEEEcCCCC----CCC-------HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCe
Q 025401 39 DLPTSLLVRNLRH----DCR-------PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQV 107 (253)
Q Consensus 39 ~~~~~i~V~nLp~----~~t-------e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 107 (253)
...+||+|.||-. ..+ +++|.+-+.+||.|..|.|.- .++.|.+-|.|.+.++|+.||+.|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3467888888732 222 355667788999999998863 3467999999999999999999999999
Q ss_pred ecCeEEEEEEcc
Q 025401 108 LLGRELTVVFAE 119 (253)
Q Consensus 108 i~g~~l~V~~a~ 119 (253)
|+|+.|...+-.
T Consensus 339 fdgRql~A~i~D 350 (382)
T KOG1548|consen 339 FDGRQLTASIWD 350 (382)
T ss_pred ecceEEEEEEeC
Confidence 999999887644
No 115
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.91 E-value=3.1e-05 Score=68.85 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=64.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC-eEEEEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG-RELTVVF 117 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g-~~l~V~~ 117 (253)
++..+|++.|||..++|++|+++|..-|-++...... ++.+.+|++.+++.|+|..|+..|+++.+.+ ..|.|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 4556899999999999999999999988765443322 1235699999999999999999999999885 5899999
Q ss_pred ccc
Q 025401 118 AEE 120 (253)
Q Consensus 118 a~~ 120 (253)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 874
No 116
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.91 E-value=9e-06 Score=75.15 Aligned_cols=79 Identities=10% Similarity=0.272 Sum_probs=64.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhc-ccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec---CeE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFE-QFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL---GRE 112 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~---g~~ 112 (253)
...+.+.|||.||---+|.-+|++++. ..|.|+.++|-. .+..|||.|.+.++|.+.+.+|||..|- .+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 346678999999999999999999999 566676663322 2678999999999999999999999765 678
Q ss_pred EEEEEcccC
Q 025401 113 LTVVFAEEN 121 (253)
Q Consensus 113 l~V~~a~~~ 121 (253)
|.|.|+...
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 888887754
No 117
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.87 E-value=9.5e-05 Score=57.42 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=45.8
Q ss_pred HHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccCC
Q 025401 57 DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEENR 122 (253)
Q Consensus 57 ~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~~ 122 (253)
+|.+.|..||+|.-|.++.+ .-+|+|.+-+.|.+|+. |+|.+|.|+.|+|.+..+.-
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccH
Confidence 57788889999988888754 47999999999999999 89999999999999876543
No 118
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.86 E-value=1.3e-05 Score=71.52 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=58.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEccc---CCCC--C--------CceEEEEEEcCHHHHHHHHHhhC
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRD---YYSG--E--------PRGFGFIQFVEPDDAAEAKRHMD 104 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~---~~~g--~--------~~g~afV~f~~~~~a~~Al~~l~ 104 (253)
.-+..||.+.|||.+-.-+.|.+||..+|.|..|.|+.. +.+. . .+-+|||+|+..+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346789999999999888999999999999999999765 2221 1 25689999999999999999876
Q ss_pred CCeec
Q 025401 105 GQVLL 109 (253)
Q Consensus 105 g~~i~ 109 (253)
.....
T Consensus 308 ~e~~w 312 (484)
T KOG1855|consen 308 PEQNW 312 (484)
T ss_pred hhhhh
Confidence 65444
No 119
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.82 E-value=4.9e-05 Score=64.86 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=53.4
Q ss_pred HHHHHHHhcccCCeeEEEEcccCCCCC-CceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 55 PEDIRRPFEQFGAIKDIYLPRDYYSGE-PRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 55 e~~L~~~F~~~G~v~~v~i~~~~~~g~-~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
++++++.+++||.|..|.|...+.... -.--.||+|+..+.|.+|+-.|||..|+|+.+...|....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 346778889999999998876543222 1234799999999999999999999999999998876544
No 120
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00017 Score=65.96 Aligned_cols=64 Identities=22% Similarity=0.413 Sum_probs=48.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCC---CCCCce---EEEEEEcCHHHHHHHHHhh
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY---SGEPRG---FGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~---~g~~~g---~afV~f~~~~~a~~Al~~l 103 (253)
.-..+||||+||++++|++|...|..||.|. |.++.... --.++| |+|+.|+++..++..|.++
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 4457899999999999999999999999863 55542111 122456 9999999998888776654
No 121
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=97.66 E-value=0.0018 Score=52.90 Aligned_cols=70 Identities=13% Similarity=-0.019 Sum_probs=46.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh--hCCCeecCe
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH--MDGQVLLGR 111 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~--l~g~~i~g~ 111 (253)
++.-|++-...-+..-|.+-+...|+|--..-....+.....-+-|-.-.++|+|++||.. |+|.+|--+
T Consensus 17 kVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 17 KVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred EecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3444444444556677888888888875443333333434455678888899999999984 899988543
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.52 E-value=0.00015 Score=68.49 Aligned_cols=83 Identities=19% Similarity=0.049 Sum_probs=67.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKD-IYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
-+...+.+|||..||..+++.++.++|.+.-.|++ |.|... .++...+.|||+|..++++..|+...+.+.+..+.|.
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEE
Confidence 45567889999999999999999999999888887 555444 3677789999999999988888876666666677788
Q ss_pred EEEcc
Q 025401 115 VVFAE 119 (253)
Q Consensus 115 V~~a~ 119 (253)
|.-..
T Consensus 508 v~si~ 512 (944)
T KOG4307|consen 508 VDSIA 512 (944)
T ss_pred eechh
Confidence 87544
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.51 E-value=0.00016 Score=69.99 Aligned_cols=84 Identities=27% Similarity=0.385 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC--eEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG--RELT 114 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g--~~l~ 114 (253)
...+.+.|||++|..++....|..+|..||.|..|.+-.. .-||||.|++...|+.|++.|-|..|.+ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4456778999999999999999999999999999887543 4699999999999999999999999985 6799
Q ss_pred EEEcccCCCCCC
Q 025401 115 VVFAEENRKKPS 126 (253)
Q Consensus 115 V~~a~~~~~~~~ 126 (253)
|.||......+.
T Consensus 525 vdla~~~~~~Pq 536 (975)
T KOG0112|consen 525 VDLASPPGATPQ 536 (975)
T ss_pred cccccCCCCChh
Confidence 999886655443
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.34 E-value=1.2e-05 Score=77.17 Aligned_cols=68 Identities=22% Similarity=0.346 Sum_probs=60.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
+++||.||++.+.+.+|...|..+|.|..+.|.....++..+|+|||+|...+++.+||...+.+.+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 46899999999999999999999999988888766778899999999999999999999965555554
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.32 E-value=0.0001 Score=70.91 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=71.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
...|||.|+|+..|.++|+.+|.++|.+..+.++..+ .|+++|.|||.|.++.+|..++..++...+....+.|+...+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4569999999999999999999999999999887765 788999999999999999999999998888888888888655
Q ss_pred CC
Q 025401 121 NR 122 (253)
Q Consensus 121 ~~ 122 (253)
..
T Consensus 815 ~~ 816 (881)
T KOG0128|consen 815 ER 816 (881)
T ss_pred cc
Confidence 33
No 126
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.32 E-value=0.00018 Score=64.39 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=59.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC-eecCeEEEEEEc
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFG--AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ-VLLGRELTVVFA 118 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~-~i~g~~l~V~~a 118 (253)
+.+||+||.+.++..+|..+|...- .-..+.| ..|||||.+.+...|.+|++.|+|. ++.|+.+.|++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 4689999999999999999997542 1112222 2589999999999999999999997 788999999987
Q ss_pred ccCCC
Q 025401 119 EENRK 123 (253)
Q Consensus 119 ~~~~~ 123 (253)
.+++.
T Consensus 74 v~kkq 78 (584)
T KOG2193|consen 74 VPKKQ 78 (584)
T ss_pred hhHHH
Confidence 76554
No 127
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.29 E-value=0.00082 Score=59.53 Aligned_cols=71 Identities=24% Similarity=0.307 Sum_probs=52.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccc----CCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQF----GAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~----G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
..|-+.+||+++++.++.+||..- |.++.|.++.. .+|...|-|||.|..+++|+.||.+ |...|+-+.|.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 345668999999999999999632 24455666554 3778889999999999999999984 54444444333
No 128
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.27 E-value=0.0016 Score=43.24 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=45.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccc---CCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQF---GAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~---G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
.+..|+|.+|. +++.++|+.+|..| .....|.++-+. -|-|.|.+.+.|..||.+|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 45789999995 57889999999998 234577887663 5889999999999999865
No 129
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.00047 Score=63.63 Aligned_cols=58 Identities=19% Similarity=0.385 Sum_probs=46.6
Q ss_pred cCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec----CeEEEEEEcccCC
Q 025401 65 FGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL----GRELTVVFAEENR 122 (253)
Q Consensus 65 ~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~----g~~l~V~~a~~~~ 122 (253)
.|.-..++|+.|..+..+.|||||.|.+.+++..+.+++||+.+. .+.+.|.||.-+.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 455567788888878889999999999999999999999999654 4556677766443
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=97.14 E-value=0.00014 Score=63.38 Aligned_cols=79 Identities=27% Similarity=0.318 Sum_probs=60.5
Q ss_pred CeEEEcCCCCCCCHHH-H--HHHhcccCCeeEEEEcccCC--CC-CCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 42 TSLLVRNLRHDCRPED-I--RRPFEQFGAIKDIYLPRDYY--SG-EPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~-L--~~~F~~~G~v~~v~i~~~~~--~g-~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.-+||-+|+..+..++ | .++|.+||.|..|.+..+.. .. ....-++|+|+..++|..||...+|+.++|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4578888988765554 4 36799999999998877541 11 12233899999999999999999999999998777
Q ss_pred EEccc
Q 025401 116 VFAEE 120 (253)
Q Consensus 116 ~~a~~ 120 (253)
.+.+.
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 76553
No 131
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.07 E-value=0.00076 Score=54.67 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=52.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc-cCCe---eEEE--EcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC--
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQ-FGAI---KDIY--LPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG-- 110 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~-~G~v---~~v~--i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g-- 110 (253)
...++|.|.+||+++||+++.+.+.. ++.. ..+. +...........-|||.|.+.+++...+..++|+.|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45678999999999999999887776 5554 2332 11111122234679999999999999999999987663
Q ss_pred ---eEEEEEEcccCCC
Q 025401 111 ---RELTVVFAEENRK 123 (253)
Q Consensus 111 ---~~l~V~~a~~~~~ 123 (253)
....|++|...+.
T Consensus 85 g~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKV 100 (176)
T ss_dssp S-EEEEEEEE-SS---
T ss_pred CCCcceeEEEcchhcc
Confidence 3456788776443
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.05 E-value=0.00013 Score=70.69 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=65.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
+...+.|||++||+..+++.+|...|..+|.|..|.|.... -+.-..||||.|.+...+..|+..|.+..|..-.+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 33456789999999999999999999999999999987653 23334699999999999999999898887775555554
Q ss_pred Ec
Q 025401 117 FA 118 (253)
Q Consensus 117 ~a 118 (253)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 44
No 133
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.99 E-value=0.00064 Score=61.68 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=61.9
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 39 DLPTSLLVRNLRHDC-RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~-te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
...+.|-|.-+++.+ +-++|..+|.+||+|+.|.|-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 334556666677664 46789999999999999988654 2469999999999988877 799999999999999
Q ss_pred cccC
Q 025401 118 AEEN 121 (253)
Q Consensus 118 a~~~ 121 (253)
-++.
T Consensus 443 hnps 446 (526)
T KOG2135|consen 443 HNPS 446 (526)
T ss_pred ecCC
Confidence 8873
No 134
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=0.0042 Score=53.50 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=57.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEE-EEEEcc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGREL-TVVFAE 119 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l-~V~~a~ 119 (253)
.+-|.|.++++... ..|..+|.+||+|++.....+ -.+-+|.|.+..+|++||. .||+.|+|..| -|..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 45677778988643 567789999999988766522 4588999999999999999 69999998654 466655
Q ss_pred cCCC
Q 025401 120 ENRK 123 (253)
Q Consensus 120 ~~~~ 123 (253)
++..
T Consensus 269 Dksv 272 (350)
T KOG4285|consen 269 DKSV 272 (350)
T ss_pred CHHH
Confidence 5443
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.85 E-value=0.0047 Score=42.63 Aligned_cols=67 Identities=21% Similarity=0.348 Sum_probs=40.4
Q ss_pred eEEEc-CCCCCCCHHHHHHHhcccC-----CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 43 SLLVR-NLRHDCRPEDIRRPFEQFG-----AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 43 ~i~V~-nLp~~~te~~L~~~F~~~G-----~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
+|||. +--..++..+|..+|...+ .|-.|.|..+ |+||+... +.|+.++..|++..+.|+.|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 2235688899999888765 4557777643 89999864 57889999999999999999998
Q ss_pred Ec
Q 025401 117 FA 118 (253)
Q Consensus 117 ~a 118 (253)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.77 E-value=0.0044 Score=50.49 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=47.0
Q ss_pred CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC--CCeecCeEEEEEEcccCC
Q 025401 54 RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD--GQVLLGRELTVVFAEENR 122 (253)
Q Consensus 54 te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~--g~~i~g~~l~V~~a~~~~ 122 (253)
..+.|+++|..|+.+..+.++.. -+-..|.|.+.++|+.|...|+ +..|.|..|.|.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999999999887777654 3568999999999999999999 999999999999986543
No 137
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.76 E-value=0.025 Score=42.15 Aligned_cols=67 Identities=18% Similarity=0.096 Sum_probs=49.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG 110 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 110 (253)
..+.|...|+.++.++|..+...+- .|..+.|+.+. ..++-.++|.|.+.++|....+.+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3445555556666677776666664 46678887763 3356688999999999999999999998773
No 138
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.70 E-value=0.0022 Score=59.39 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=56.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcc--cCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC--CeecCe
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQ--FGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG--QVLLGR 111 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g--~~i~g~ 111 (253)
.+...-|.|+|.-||.++.+++|+.||.. +-+++.|.+..+. --||+|++.+||+.|++.|.. ++|.|+
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 45556688999999999999999999974 6678888876552 469999999999999887643 255566
Q ss_pred EEEE
Q 025401 112 ELTV 115 (253)
Q Consensus 112 ~l~V 115 (253)
.|..
T Consensus 243 pImA 246 (684)
T KOG2591|consen 243 PIMA 246 (684)
T ss_pred chhh
Confidence 5543
No 139
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.69 E-value=0.0087 Score=41.98 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=41.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 105 (253)
...+|+ +|..+...||.++|..||.|. |.++.+ .-|||.+.+.+.|..|+..+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 456666 999999999999999999975 445444 3699999999999999987753
No 140
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.69 E-value=0.0017 Score=54.63 Aligned_cols=62 Identities=26% Similarity=0.439 Sum_probs=54.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD 104 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 104 (253)
..|+|.||...+..+.|...|..||+|....++.+ ..++..+-++|+|+..-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 67999999999999999999999999987666655 367778899999999999999998763
No 141
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.48 E-value=0.0015 Score=61.61 Aligned_cols=74 Identities=15% Similarity=0.124 Sum_probs=64.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 35 GRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 35 ~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
-.+.++..+|||+||...+..+.++.++..+|.|..+..+. |+|++|..+..+..|+..|+...++|..|.
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 35567778999999999999999999999999987766542 899999999999999999999999998887
Q ss_pred EEE
Q 025401 115 VVF 117 (253)
Q Consensus 115 V~~ 117 (253)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 765
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.28 E-value=0.02 Score=44.28 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=52.4
Q ss_pred CeEEEcCCCCCCC----HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 42 TSLLVRNLRHDCR----PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 42 ~~i~V~nLp~~~t----e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
.||.|.=|..++. ...|...+..||+|..|.+.- +.-|.|.|.+...|=+|+.+++. ...|..+.+.|
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 4677776665543 234566678999999998753 34699999999999999998876 55677788877
Q ss_pred cc
Q 025401 118 AE 119 (253)
Q Consensus 118 a~ 119 (253)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 43
No 143
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.93 E-value=0.0057 Score=59.30 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=60.8
Q ss_pred EcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec--CeEEEEEEcccCCC
Q 025401 46 VRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL--GRELTVVFAEENRK 123 (253)
Q Consensus 46 V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~--g~~l~V~~a~~~~~ 123 (253)
+.|++...+-..|..+|.+||.|..++.+.+ ...|.|+|...+.|..|+++|+|+++. |.+.+|.+|+....
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 4445556667789999999999999988776 357999999999999999999999655 88899999887655
Q ss_pred CC
Q 025401 124 KP 125 (253)
Q Consensus 124 ~~ 125 (253)
..
T Consensus 377 ~e 378 (1007)
T KOG4574|consen 377 YE 378 (1007)
T ss_pred cc
Confidence 43
No 144
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.52 E-value=0.0062 Score=53.16 Aligned_cols=83 Identities=13% Similarity=0.024 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
..+++||+++...+.+.++..+|.++|.+..+.+.........+++++|.|+..+.+..||.......+.+..+...+.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999988877776655567789999999999999999999544446666666555544
Q ss_pred cCC
Q 025401 120 ENR 122 (253)
Q Consensus 120 ~~~ 122 (253)
...
T Consensus 167 ~~~ 169 (285)
T KOG4210|consen 167 RRG 169 (285)
T ss_pred ccc
Confidence 433
No 145
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=95.30 E-value=0.016 Score=46.54 Aligned_cols=78 Identities=24% Similarity=0.366 Sum_probs=60.0
Q ss_pred CCCCeEEEcCCCCCCCH-----HHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCe-E
Q 025401 39 DLPTSLLVRNLRHDCRP-----EDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGR-E 112 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te-----~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~-~ 112 (253)
+.+++|++++|+..|-. ...+.+|.+|-+.+.+.++.. .++.-|.|.+++.|..|..+++...|.|+ .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 67888999999877532 234566777766666666544 46788999999999999999999999998 8
Q ss_pred EEEEEcccCC
Q 025401 113 LTVVFAEENR 122 (253)
Q Consensus 113 l~V~~a~~~~ 122 (253)
|++.++....
T Consensus 82 ~k~yfaQ~~~ 91 (193)
T KOG4019|consen 82 LKLYFAQPGH 91 (193)
T ss_pred EEEEEccCCC
Confidence 8888877543
No 146
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.28 E-value=0.12 Score=34.81 Aligned_cols=56 Identities=18% Similarity=0.358 Sum_probs=43.7
Q ss_pred CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 52 DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 52 ~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
.++.++|+..|.+|+- .. |..+. .| -||.|.+.++|+.|+...++..+.+..|.++
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 4788999999999963 23 33332 23 4899999999999999999999988887653
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.79 E-value=0.078 Score=48.26 Aligned_cols=68 Identities=24% Similarity=0.240 Sum_probs=57.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG 110 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 110 (253)
.+.|+|-.+|..++-.||..|+..|- .|..|.|+.+. -.+.-.++|.|.+.++|....+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77899999999999999999988765 57889998853 2234568999999999999999999998874
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=0.26 Score=46.28 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=62.2
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhccc----CCeeEEEEcccCC----------CCC----------------------
Q 025401 39 DLPTSLLVRNLRHD-CRPEDIRRPFEQF----GAIKDIYLPRDYY----------SGE---------------------- 81 (253)
Q Consensus 39 ~~~~~i~V~nLp~~-~te~~L~~~F~~~----G~v~~v~i~~~~~----------~g~---------------------- 81 (253)
..+..|-|.||.|. |...+|..+|..| |.|..|.|..... .|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45678999999997 8889999888765 5788877652211 111
Q ss_pred ---------------CceEEEEEEcCHHHHHHHHHhhCCCeec--CeEEEEEEcccCC
Q 025401 82 ---------------PRGFGFIQFVEPDDAAEAKRHMDGQVLL--GRELTVVFAEENR 122 (253)
Q Consensus 82 ---------------~~g~afV~f~~~~~a~~Al~~l~g~~i~--g~~l~V~~a~~~~ 122 (253)
..-||.|+|.+.+.|.++...++|.+|. +..|-+.|.....
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm 309 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDM 309 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCC
Confidence 1248999999999999999999999998 4556666655443
No 149
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=93.32 E-value=0.27 Score=42.32 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=45.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCe-eEEEEcccCCCCCCceEEEEEEcCH-------HHHHHHHHhhC
Q 025401 35 GRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAI-KDIYLPRDYYSGEPRGFGFIQFVEP-------DDAAEAKRHMD 104 (253)
Q Consensus 35 ~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~-------~~a~~Al~~l~ 104 (253)
|.+....+-|+|+||+.++...||+..+.+.+-+ ..|.+.- +.+-||+.|.+. .++.+++..||
T Consensus 324 g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 324 GVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cccCccccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 3444556679999999999999999999888754 3444432 257899999754 45556655554
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.04 E-value=0.0042 Score=55.84 Aligned_cols=79 Identities=13% Similarity=0.234 Sum_probs=64.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
...|.|.|+|+...|+.|..|+..||.|+.|..+.-. ......-|+|...+.+..||.+|+|..|....++|.|...
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~---~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD---SETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc---hHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 3458899999999999999999999999988764321 1123456789999999999999999999999999998765
Q ss_pred CC
Q 025401 121 NR 122 (253)
Q Consensus 121 ~~ 122 (253)
..
T Consensus 157 eq 158 (584)
T KOG2193|consen 157 EQ 158 (584)
T ss_pred hh
Confidence 43
No 151
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=0.3 Score=43.93 Aligned_cols=60 Identities=28% Similarity=0.395 Sum_probs=49.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCe-eEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAI-KDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
.+.+.++.|-|-++|.....+||..+|+.|+.- ..|.|+-+ -+||..|.+...|..||..
T Consensus 386 ~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 386 RESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred CcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 345678999999999999889999999999753 45666655 3799999999999999984
No 152
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=91.84 E-value=0.24 Score=33.42 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=46.5
Q ss_pred HHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 56 EDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 56 ~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
++|++.|.++| .|.+|..+....+..+...-||+.....+... .|+-+.|++..|.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888888888 67888888887777778888999886654444 466678889998888543
No 153
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=91.07 E-value=0.51 Score=31.94 Aligned_cols=61 Identities=15% Similarity=0.255 Sum_probs=45.3
Q ss_pred HHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 56 EDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 56 ~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
++|.+.|...| +|..|.-+....+..+....||+++...+.. +.|+-..|.+..|+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCC
Confidence 46778888777 6778877777767777888999998765533 3356678889999988654
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=90.58 E-value=0.37 Score=36.25 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=30.3
Q ss_pred CCeEEEcCCCCC---------CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC-HHHHHHHHH
Q 025401 41 PTSLLVRNLRHD---------CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE-PDDAAEAKR 101 (253)
Q Consensus 41 ~~~i~V~nLp~~---------~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Al~ 101 (253)
|.+++|-|++.. +..++|.+.|..|..+. +..+.+. ..+.|+++|+|.. ..-...|+.
T Consensus 8 PwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 8 PWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp S-EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CCEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 456788888654 35578999999998875 4444443 2457899999974 444455554
No 155
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=89.04 E-value=0.052 Score=50.53 Aligned_cols=73 Identities=19% Similarity=0.135 Sum_probs=56.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEE
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGREL 113 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 113 (253)
.|+|||.|++++++-++|..++..+--+..+.+-.........-+.+|+|.--..+..|+.+||+..+....+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 5779999999999999999999988766666654443334456688999998778888888888887665543
No 156
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.20 E-value=0.13 Score=44.19 Aligned_cols=39 Identities=21% Similarity=0.521 Sum_probs=29.7
Q ss_pred CCCCCCeEEEcCCCCC------------CCHHHHHHHhcccCCeeEEEEcc
Q 025401 37 GRDLPTSLLVRNLRHD------------CRPEDIRRPFEQFGAIKDIYLPR 75 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~------------~te~~L~~~F~~~G~v~~v~i~~ 75 (253)
|.+.+.|||+.+||-. .+++-|...|+.||.|..|.|+.
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3455678888888743 24667999999999999888764
No 157
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=87.37 E-value=0.94 Score=40.65 Aligned_cols=71 Identities=21% Similarity=0.400 Sum_probs=50.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCC-eeEEEEcccCCC--CCCceEEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGA-IKDIYLPRDYYS--GEPRGFGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~~~--g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
...+.|.|.+||+.+++++|.+.+..|-. |....+...... ....+.|||.|..++++......++|++|.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 45578999999999999999888877643 333333311111 123578999999999998888889998665
No 158
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=85.46 E-value=1.1 Score=37.15 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=45.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHH
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 101 (253)
........+++.+++..++..++..+|..+|.|..+.+...........+.++.+.....+..++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 344566789999999999999999999999999777776554333344444444444444444444
No 159
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.33 E-value=0.15 Score=46.44 Aligned_cols=79 Identities=5% Similarity=-0.120 Sum_probs=61.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
+..|+..|+..+++.+|.-+|+-||.|..+.+......+...-.+||+... .+|..||..|.-..+.|..+.|.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 457888999999999999999999999988876655556666778887753 5677777777666777878888777643
No 160
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=83.34 E-value=5 Score=36.52 Aligned_cols=83 Identities=16% Similarity=0.284 Sum_probs=57.8
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhccc----CCeeEEEEcccCC---------------------------------
Q 025401 37 GRDLPTSLLVRNLRHD-CRPEDIRRPFEQF----GAIKDIYLPRDYY--------------------------------- 78 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~-~te~~L~~~F~~~----G~v~~v~i~~~~~--------------------------------- 78 (253)
...+.+.|-|-||.|+ |...+|..+|..| |.|..|.|.....
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 3566778999999987 7888898888755 5666665542110
Q ss_pred -------CC-------C------------------CceEEEEEEcCHHHHHHHHHhhCCCeecC--eEEEEEEcc
Q 025401 79 -------SG-------E------------------PRGFGFIQFVEPDDAAEAKRHMDGQVLLG--RELTVVFAE 119 (253)
Q Consensus 79 -------~g-------~------------------~~g~afV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~~a~ 119 (253)
.| . -.-||+|+|.+.+.+...+..++|.++.. ..+.+.|..
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 00 0 02389999999999999999999998774 444555543
No 161
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=82.95 E-value=3.2 Score=36.07 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=56.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCC-------CCCCceEEEEEEcCHHHHHHHHH----hhCC
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY-------SGEPRGFGFIQFVEPDDAAEAKR----HMDG 105 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~-------~g~~~g~afV~f~~~~~a~~Al~----~l~g 105 (253)
+.-....|.+.||...++--.+...|.+||+|+.|+|+.+.. ..+......+-|-+.+.|..... .|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 344455688999999999889999999999999999987651 12234567888988887765432 2221
Q ss_pred --CeecCeEEEEEEcc
Q 025401 106 --QVLLGRELTVVFAE 119 (253)
Q Consensus 106 --~~i~g~~l~V~~a~ 119 (253)
+.|....|.|.|..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 24555566666544
No 162
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=78.41 E-value=62 Score=31.62 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=48.6
Q ss_pred CCCCCHHHHHHHhcccCCee-----EEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 50 RHDCRPEDIRRPFEQFGAIK-----DIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 50 p~~~te~~L~~~F~~~G~v~-----~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
...++..+|..++..-+.|. .|.|.. .|.||+.. .+.|...+..|++..|.|+.|.|+.+...
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcC-hhhHHHHHHHhccccccCCceEEEECCCC
Confidence 35688888888887666543 556643 48999986 56688899999999999999999987533
No 163
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=78.20 E-value=0.49 Score=39.35 Aligned_cols=77 Identities=25% Similarity=0.377 Sum_probs=58.3
Q ss_pred CCCCCCeEEEcC----CCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE
Q 025401 37 GRDLPTSLLVRN----LRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE 112 (253)
Q Consensus 37 ~~~~~~~i~V~n----Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 112 (253)
..+...+++.|+ |...++++.+...|...|.|..+.+..+. ++.+..++||++.-....-.|+...+++.+.-++
T Consensus 76 ~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 76 EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCC
Confidence 334456677777 77778888889999999999988887765 3667889999998888888888877776554444
Q ss_pred EE
Q 025401 113 LT 114 (253)
Q Consensus 113 l~ 114 (253)
+.
T Consensus 155 ~~ 156 (267)
T KOG4454|consen 155 VT 156 (267)
T ss_pred cc
Confidence 33
No 164
>PRK11901 hypothetical protein; Reviewed
Probab=78.06 E-value=6.1 Score=34.95 Aligned_cols=64 Identities=9% Similarity=0.156 Sum_probs=41.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEE--EEcCHHHHHHHHHhhCCCe
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFI--QFVEPDDAAEAKRHMDGQV 107 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV--~f~~~~~a~~Al~~l~g~~ 107 (253)
...++|.|..+ ..++.|..|..+++ +..++|......|+ ..|.+| .|.+.++|..||..|-...
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 44567777654 45788888888775 34444443322332 344433 7899999999999886543
No 165
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=74.91 E-value=1.3 Score=41.42 Aligned_cols=9 Identities=11% Similarity=0.283 Sum_probs=4.0
Q ss_pred cCHHHHHHH
Q 025401 91 VEPDDAAEA 99 (253)
Q Consensus 91 ~~~~~a~~A 99 (253)
++.++|.++
T Consensus 235 kdkeea~a~ 243 (653)
T KOG2548|consen 235 KDKEEAKAQ 243 (653)
T ss_pred hhHHHHHHH
Confidence 344444433
No 166
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=74.78 E-value=13 Score=23.85 Aligned_cols=54 Identities=7% Similarity=0.176 Sum_probs=40.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCH----HHHHHHHHh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEP----DDAAEAKRH 102 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~----~~a~~Al~~ 102 (253)
||.|.||.=..-...|+..+...-.|..+.+... .+.+-|+|... ++...+|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5778888766677889999999988888887654 35688888743 556666664
No 167
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=71.15 E-value=5.2 Score=33.72 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=28.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDI 71 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v 71 (253)
......+||+-|||..+|++.|..+..++|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 33455689999999999999999999998865544
No 168
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=68.90 E-value=41 Score=25.67 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=47.9
Q ss_pred CeEEEcCCCCC---CCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 42 TSLLVRNLRHD---CRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 42 ~~i~V~nLp~~---~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
..|.|...... .+...|.+++.+-| .++.+.... +-..|.|.+.++...|.+.|....-++..|.+.+
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~--------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN--------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC--------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 35777765333 45677888888776 344554432 3589999999999999888876665566676666
Q ss_pred cc
Q 025401 118 AE 119 (253)
Q Consensus 118 a~ 119 (253)
+.
T Consensus 108 ~p 109 (127)
T PRK10629 108 DN 109 (127)
T ss_pred CC
Confidence 55
No 169
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=68.06 E-value=2.5 Score=40.54 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=55.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
+||+.|-...-+..-|..++..++.+....++.....+....-||++|.....++.|.. |.+..|....|++
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKS 584 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceec
Confidence 78888887777888888999999988877777665566666689999999888876655 6777776655543
No 170
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=64.28 E-value=77 Score=25.74 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=6.4
Q ss_pred cCHHHHHHHHHh
Q 025401 91 VEPDDAAEAKRH 102 (253)
Q Consensus 91 ~~~~~a~~Al~~ 102 (253)
.++++|..+|..
T Consensus 58 RDA~DAvr~LDG 69 (195)
T KOG0107|consen 58 RDAEDAVRYLDG 69 (195)
T ss_pred ccHHHHHhhcCC
Confidence 355555555553
No 171
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.44 E-value=16 Score=24.12 Aligned_cols=19 Identities=37% Similarity=0.698 Sum_probs=16.2
Q ss_pred HHHHHHhcccCCeeEEEEc
Q 025401 56 EDIRRPFEQFGAIKDIYLP 74 (253)
Q Consensus 56 ~~L~~~F~~~G~v~~v~i~ 74 (253)
++|.++|+..|+|.-+.|.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6799999999999877664
No 172
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=60.74 E-value=27 Score=26.26 Aligned_cols=71 Identities=10% Similarity=0.127 Sum_probs=34.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc--C------HHHHHHHHHhhCCCeecCeEE
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV--E------PDDAAEAKRHMDGQVLLGREL 113 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~--~------~~~a~~Al~~l~g~~i~g~~l 113 (253)
..||||++|.....+.|++. .+..|..+..... .....++-++.|. + .+....|++.++...-.|..|
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~~~--~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~V 81 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKL--GITHVINVTNEVP--NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKV 81 (138)
T ss_pred CCeEECChhHcCCHHHHHHc--CCCEEEEccCCCC--CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeE
Confidence 35999999977665554442 3334444432211 1112334444443 2 122344555554444445555
Q ss_pred EEE
Q 025401 114 TVV 116 (253)
Q Consensus 114 ~V~ 116 (253)
.|.
T Consensus 82 lVH 84 (138)
T smart00195 82 LVH 84 (138)
T ss_pred EEE
Confidence 554
No 173
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=60.55 E-value=29 Score=23.27 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=35.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE 92 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 92 (253)
..+|+|-++.=.--...++..+.....|..+.+... .+.++|+|.+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~ 48 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDS 48 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcC
Confidence 356778777666667789999998888888887665 3569999987
No 174
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=60.08 E-value=35 Score=24.58 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=32.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhcc-------c-CCeeEEEEccc-----CCCCCCce-EEEEEEcCHHHHHHHHHh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQ-------F-GAIKDIYLPRD-----YYSGEPRG-FGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~-------~-G~v~~v~i~~~-----~~~g~~~g-~afV~f~~~~~a~~Al~~ 102 (253)
++|| |.++++++++.+++.+ . |.|..+..+-. +..+...| |.++.|.-..++.+.|+.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 4666 5677777776665543 3 45655542211 11233345 678888866666666653
No 175
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=60.04 E-value=13 Score=31.40 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=40.7
Q ss_pred CCeEEEcCCCCCC----CHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEE-cCHHHHHHHHHhhCCCeecCeEEE
Q 025401 41 PTSLLVRNLRHDC----RPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQF-VEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 41 ~~~i~V~nLp~~~----te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f-~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
...||||+|-..+ -.++|...+.+.+ .|+.+.+-.. ..||+.... .+.|+..++|+.+.+..|.-..+.
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ss-----y~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSS-----YNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccc-----ccccccccccccHHHHHHHHHHhhccCcccceEE
Confidence 4579999987553 2344544444333 3444444322 234554333 467888888887766665554444
Q ss_pred EEEc
Q 025401 115 VVFA 118 (253)
Q Consensus 115 V~~a 118 (253)
|-.+
T Consensus 112 ~GhS 115 (299)
T KOG4840|consen 112 VGHS 115 (299)
T ss_pred EecC
Confidence 4443
No 176
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=59.67 E-value=59 Score=22.87 Aligned_cols=66 Identities=11% Similarity=0.029 Sum_probs=37.5
Q ss_pred EEEcCCCCCCCHHHHHH----HhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 44 LLVRNLRHDCRPEDIRR----PFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~----~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
|+|..++..++-++|.+ +|.-.-. ..+.|..-...|. .|.|.+.++.+.|+..+.-..=.+-.|+|
T Consensus 11 i~it~~d~~~s~e~L~~~v~~~c~~~~~-q~ft~kw~DEEGD-----p~tiSS~~EL~EA~rl~~~n~~~~l~ihv 80 (83)
T cd06404 11 IMITSIDPSISLEELCNEVRDMCRFHND-QPFTLKWIDEEGD-----PCTISSQMELEEAFRLYELNKDSELNIHV 80 (83)
T ss_pred EEEEEcCCCcCHHHHHHHHHHHhCCCCC-CcEEEEEECCCCC-----ceeecCHHHHHHHHHHHHhcCcccEEEEe
Confidence 88888988888776544 4432211 1222222222343 46788999999998864433323444444
No 177
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=59.63 E-value=31 Score=27.06 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=26.5
Q ss_pred eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 68 IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 68 v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
|..|.++.. .+||.||+....+++..+|..+.+.
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 556665544 4899999999889999999887664
No 178
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=59.61 E-value=5.1 Score=36.35 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=46.4
Q ss_pred CeEEEcCCCCCCCH--------HHHHHHhcc--cCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHH
Q 025401 42 TSLLVRNLRHDCRP--------EDIRRPFEQ--FGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101 (253)
Q Consensus 42 ~~i~V~nLp~~~te--------~~L~~~F~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 101 (253)
..+|+.++...... ++|+.+|.. .+.+..|.+-.+.......|-.|++|...+.|+.++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34666666654333 489999988 6778888887777677788999999999999999873
No 179
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=59.01 E-value=10 Score=33.38 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=24.4
Q ss_pred EEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 86 GFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 86 afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
|||+|++.++|+.|++.+....- ..+.|+.|.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCC
Confidence 79999999999999996554443 4456666554
No 180
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=58.71 E-value=34 Score=24.09 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=39.1
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-cC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQ-FG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
.|+.-++..++..+|++.+++ || .|..|..+.-+ . ..--|||.|...++|......|
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHhh
Confidence 445557788999999888876 44 56666554432 1 2346999999888888776544
No 181
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=57.98 E-value=48 Score=23.54 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=31.5
Q ss_pred HHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 55 PEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 55 e~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
++.++++++++| +|+.+++.... --.++.+++.+.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHHHH
Confidence 455777787776 67778876543 3357788999988887766544
No 182
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=57.49 E-value=56 Score=22.11 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=35.3
Q ss_pred EEEcCCCCCCCHHHHHHHhc-ccCCe-eEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC
Q 025401 44 LLVRNLRHDCRPEDIRRPFE-QFGAI-KDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD 104 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~-~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 104 (253)
+++-.|+..++-++|...+. +|+.. ..+.|......| -+|.+.+.++.+.|+..+.
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 45556788889888766553 44421 233333322222 2889999999999999654
No 183
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=57.46 E-value=40 Score=21.11 Aligned_cols=27 Identities=7% Similarity=0.238 Sum_probs=22.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCe
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAI 68 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v 68 (253)
..++|.+.......++|++++..+|..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 567888877678899999999999864
No 184
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=56.06 E-value=5.7 Score=35.38 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=36.6
Q ss_pred HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 55 PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 55 e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
...|.+++.+.|.|..-.|..-. +.|.+||.+-.+++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 46788888888987655544322 3578899999999999999998875
No 185
>PF15063 TC1: Thyroid cancer protein 1
Probab=55.98 E-value=1.6 Score=29.88 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.0
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCee
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQFGAIK 69 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~~G~v~ 69 (253)
--+.||-.+++...|+.+|..-|+..
T Consensus 28 kasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 28 KASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred hhhhhhhhccCHHHHHHHHHHccchh
Confidence 34678889999999999999999753
No 186
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=55.73 E-value=41 Score=31.85 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=40.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhc----ccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFE----QFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD 104 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~----~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 104 (253)
..|.++.-..+.+.-+|..+|. .+|.|+.+.|...+.. ......++.|.+.++|..|+..|.
T Consensus 190 ~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 190 EALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKP-PVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred cEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCC-cceEEEEEECCCHHHHHHHHHHHH
Confidence 3444443222233456777765 6788888887655432 234567889999999999988754
No 187
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=55.22 E-value=17 Score=29.45 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=37.2
Q ss_pred CCHHHHHHHhccc-CCeeEEEEcccCCC-CCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEE
Q 025401 53 CRPEDIRRPFEQF-GAIKDIYLPRDYYS-GEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGREL 113 (253)
Q Consensus 53 ~te~~L~~~F~~~-G~v~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 113 (253)
.|+++|.++..-. |.+..|.+-..... ...+|-.||+|...+.|.++++. +...+....|
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el 179 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETEL 179 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHH
Confidence 4555555544322 68888877543211 24678899999999999988774 4333333333
No 188
>PF14893 PNMA: PNMA
Probab=54.62 E-value=11 Score=33.63 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=21.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQ 64 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~ 64 (253)
+.-..|.|.+||.+|++++|++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 44566999999999999999887753
No 189
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=54.39 E-value=41 Score=23.46 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=22.8
Q ss_pred CceEEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 82 PRGFGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 82 ~~g~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
.+||.|||=.++.++..|+..+.+....
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~~~ 70 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIRGS 70 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEEEE
T ss_pred CceEEEEEeCCHHHHHHHHhcccceeec
Confidence 5899999999999999999887665433
No 190
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=53.08 E-value=85 Score=24.85 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=42.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCe
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFG--AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQV 107 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 107 (253)
+......+|.||.|-..--.+.|.. ....| .|+++.+.+....+.+...--+.+...+..++|+..|+...
T Consensus 83 ~~~~~~~vvLIGhiv~tdiqDTId~-In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l~ev~ 155 (170)
T COG2061 83 RLREKTDVVLIGHIVHTDIQDTIDR-INSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRLKEVA 155 (170)
T ss_pred CcceeEeEEEEEeeecCcHHHHHHH-hhccCCEEEEEEEeecCCCCCCcceeEEEEEcChhHHHHHHHHHHHHH
Confidence 3445556788888754433333333 33444 67777776654455554333444557888888888776543
No 191
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=53.04 E-value=35 Score=23.61 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=38.7
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-cC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQ-FG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
.|+..++..++..+|+..++. |+ .|..|..+.-+ . ..--|||.+..-+.|......|
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHhh
Confidence 456668889999999988876 44 45666544332 1 2346999998877777665543
No 192
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=52.80 E-value=28 Score=25.33 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=42.2
Q ss_pred CCeEEEcCCCCCCC--HHHHHHHhcccCCeeEEEEcccCC-CCCCceEEEEEEcC--HHHHHHHHHhhCCCeec-CeEEE
Q 025401 41 PTSLLVRNLRHDCR--PEDIRRPFEQFGAIKDIYLPRDYY-SGEPRGFGFIQFVE--PDDAAEAKRHMDGQVLL-GRELT 114 (253)
Q Consensus 41 ~~~i~V~nLp~~~t--e~~L~~~F~~~G~v~~v~i~~~~~-~g~~~g~afV~f~~--~~~a~~Al~~l~g~~i~-g~~l~ 114 (253)
+..|.|+-.....+ .+.|.++|.+...|..++|..-.. ++...-+-.|+|.. .+.+..+|..+....+. +..|.
T Consensus 5 g~~v~l~~P~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~~~~~vd 84 (108)
T PF14581_consen 5 GEKVLLGEPEEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLPDGWPVD 84 (108)
T ss_pred CCEEEecCCccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHhhhcCCCCceEE
Confidence 45677764422222 366889999999998776654433 33444444566765 33333333333333333 35555
Q ss_pred EEEcc
Q 025401 115 VVFAE 119 (253)
Q Consensus 115 V~~a~ 119 (253)
+....
T Consensus 85 ~~~~~ 89 (108)
T PF14581_consen 85 FVLLD 89 (108)
T ss_pred EEEcc
Confidence 54443
No 193
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=52.47 E-value=8 Score=27.55 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=19.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFE 63 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~ 63 (253)
...+|.|.|||..+.+++|++.++
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 457899999999999999987543
No 194
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=50.96 E-value=24 Score=25.14 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=22.7
Q ss_pred EEEEEcCHHHHHHHHHh-hCCCeecCeEEEEEEc
Q 025401 86 GFIQFVEPDDAAEAKRH-MDGQVLLGRELTVVFA 118 (253)
Q Consensus 86 afV~f~~~~~a~~Al~~-l~g~~i~g~~l~V~~a 118 (253)
|+|+|.+..-|+..++. -+...+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 68999999999998873 2223555666655543
No 195
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=50.33 E-value=87 Score=25.23 Aligned_cols=27 Identities=22% Similarity=0.121 Sum_probs=16.2
Q ss_pred eEEEEEEc----CHHHHHHHHHhhCCCeecCe
Q 025401 84 GFGFIQFV----EPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 84 g~afV~f~----~~~~a~~Al~~l~g~~i~g~ 111 (253)
|..++|+. +.+.|..||. +-...|..+
T Consensus 129 G~ilfei~~~~~~~~~akeAlr-~a~~KLP~k 159 (172)
T PRK04199 129 GQKIFTVRVNPEHLEAAKEALR-RAAMKLPTP 159 (172)
T ss_pred CCEEEEEEecCCCHHHHHHHHH-HhhccCCCc
Confidence 34455554 6778888888 344444443
No 196
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=50.29 E-value=86 Score=21.94 Aligned_cols=65 Identities=9% Similarity=-0.043 Sum_probs=35.4
Q ss_pred EEcCCCC--CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 45 LVRNLRH--DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 45 ~V~nLp~--~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....|++ .+++++|.+.+.+.=.+..+.|..-...+ =.|...+..+.+.||..+.. .|..|.+.+
T Consensus 12 ~rf~~~~~~~~~~~~L~~ev~~rf~l~~f~lKYlDde~-----e~v~lssd~eLeE~~rl~~~---~~~~l~~~v 78 (81)
T cd06396 12 QSFLVSDSENTTWASVEAMVKVSFGLNDIQIKYVDEEN-----EEVSVNSQGEYEEALKSAVR---QGNLLQMNV 78 (81)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhCCCcceeEEEcCCC-----CEEEEEchhhHHHHHHHHHh---CCCEEEEEE
Confidence 3445667 78998887776543333344443221122 25566667777777775432 245555543
No 197
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=49.58 E-value=53 Score=22.13 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=39.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
.+|.|......---.+|...|...+ .|..+.+......+......-|+..+.++....|..|...
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i 72 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQI 72 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTS
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCC
Confidence 3455555444445677888887776 5777777653223333444556778999999888887653
No 198
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=49.38 E-value=66 Score=21.68 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=27.9
Q ss_pred HHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 56 EDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 56 ~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
.+|.+++.++| +..+.|.-. | .-++.|+.|.+.+.++.+++.|
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGs---G-~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGS---G-GGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETT---S-SSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCC---C-CCCeEEEEECCHHHHHHHHHHH
Confidence 45677778888 444444311 0 1357788888888888888766
No 199
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=49.33 E-value=84 Score=21.56 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=38.9
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-------cCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQ-------FGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL 108 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~-------~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 108 (253)
|..-+||..+|.++|.++..+ +..|..+.-.... ...+-||+.+=.+++...++.+. .|..+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~--d~~k~~Cly~Ap~~eaV~~~~~~-aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSE--DDGKIFCLYEAPDEEAVREHARR-AGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEec--CCCeEEEEEECCCHHHHHHHHHH-cCCCc
Confidence 556789988999998877654 3344444333222 12356777777788877777664 45543
No 200
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=48.82 E-value=54 Score=24.68 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=26.7
Q ss_pred CCCHHHHHHHhcccC----Cee-EEEEcccCCCCCCceEEEEEEcCHHHHHH
Q 025401 52 DCRPEDIRRPFEQFG----AIK-DIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98 (253)
Q Consensus 52 ~~te~~L~~~F~~~G----~v~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 98 (253)
++..+||.+-+.+.- +++ -+.+-....+|...|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 477788876665432 222 2233334456778889987 666665543
No 201
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=48.76 E-value=47 Score=23.97 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=28.5
Q ss_pred eEEEcCCCCCCCHHHH---HHHhcccCCeeEEEE--cccCCCCCCceEEEEEEc
Q 025401 43 SLLVRNLRHDCRPEDI---RRPFEQFGAIKDIYL--PRDYYSGEPRGFGFIQFV 91 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L---~~~F~~~G~v~~v~i--~~~~~~g~~~g~afV~f~ 91 (253)
..|+.+||..+.+.++ +.+|..+..-..|.+ ..........|++++.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4689999999887765 556666664444444 122334455666655443
No 202
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=47.90 E-value=37 Score=24.05 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=29.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV 91 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~ 91 (253)
...-|||+|++..+-|.-.+.+.+..++-. +.|+... ....||+|-.+-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~-a~m~~~~--~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGS-AVMVWSD--NNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCcc-EEEEEcc--CCCCCEEEEEeC
Confidence 344599999998887665555555443322 2333221 225789998873
No 203
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=47.28 E-value=23 Score=23.85 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=21.8
Q ss_pred EEEEEEcCHHHHHHHHHhhCCCeecCe
Q 025401 85 FGFIQFVEPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 85 ~afV~f~~~~~a~~Al~~l~g~~i~g~ 111 (253)
+.+|.|.+..+|.+|-+.|....|..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 689999999999999888876655433
No 204
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.25 E-value=56 Score=25.54 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=37.5
Q ss_pred CCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 48 NLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 48 nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
.|+..+.++-|+++.+..|.|.+.. -.+ ..+.|-+.+....||+.|
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHH
Confidence 5788899999999999999887765 223 466788999999999875
No 205
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.86 E-value=42 Score=31.70 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=45.3
Q ss_pred EEEcCCCCCCC---HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEE
Q 025401 44 LLVRNLRHDCR---PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGREL 113 (253)
Q Consensus 44 i~V~nLp~~~t---e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 113 (253)
=+||||+.-.. ...|..+-++||.|-.+.|-. .-.|...+.+.|+.|+. -|+..|.++..
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 45888876543 345666677999999777742 24777889999999999 48888888875
No 206
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=45.28 E-value=46 Score=27.04 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=38.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCC-CCCceEEEEEEcCHHHHHHHHHhh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYS-GEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
.=||+|.....+-..|-+.|...|- .|.++..+.. ..+.++-+|.|.+.+++..++..+
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 5689999998888889888888874 2333333222 225588999999999999888864
No 207
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=45.13 E-value=78 Score=20.01 Aligned_cols=60 Identities=13% Similarity=0.022 Sum_probs=29.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCH-HHHHHHHHhhC
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEP-DDAAEAKRHMD 104 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~Al~~l~ 104 (253)
+|.|......-.-.+|..+|..++ .|..+...... +......++++... +....+++.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTE--DPGISRITIVVEGDDDVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecC--CCCeEEEEEEEECCHHHHHHHHHHHh
Confidence 445533333334567888888776 46666553321 11122233333322 55555565554
No 208
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=45.10 E-value=48 Score=22.55 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=27.7
Q ss_pred HhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee
Q 025401 61 PFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL 108 (253)
Q Consensus 61 ~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 108 (253)
.+.+||.|..+.-.+ .|++ .|-+.++++..++.|....|
T Consensus 16 ~L~kfG~i~Y~Skk~--------kYvv-lYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKM--------KYVV-LYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECCc--------cEEE-EEECHHHHHHHHHHHhcCCC
Confidence 467899998775432 2444 47789999999998876554
No 209
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=44.51 E-value=27 Score=25.38 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=17.3
Q ss_pred ceEEEEEEcCHHHHHHHHHhh
Q 025401 83 RGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 83 ~g~afV~f~~~~~a~~Al~~l 103 (253)
--|.+++|.+.+...+|..++
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 358899999999988887764
No 210
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=44.14 E-value=7.3 Score=26.16 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=26.0
Q ss_pred HHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 56 EDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 56 ~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
++|++.|..+.....+.- =.+|..|.+.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~vk----------L~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVK----------LKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhhh----------hhhccCCCCHHHHHHHHHHh
Confidence 578888876554433221 14899999999988887754
No 211
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=43.37 E-value=1.1e+02 Score=21.13 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHH-hcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 48 NLRHDCRPEDIRRP-FEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 48 nLp~~~te~~L~~~-F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
.++.-+.-+||... -..||...++.+..+ .-.|-..+.+|..+||+.|+-. ..-+.|.|-
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~s-~~~ksLRil 75 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDRS-PHMKSLRIL 75 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHccC-ccccceeEe
Confidence 46666776776544 457888777776543 2678889999999999987763 233344443
No 212
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=43.05 E-value=2.6 Score=28.13 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=31.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKD-IYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD 104 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 104 (253)
...|.|+.+...-..+.+...+...|.-.. +.+... +..--+-+-.|.+.++|+.++..|.
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~---~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKG---GPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEE---TTCEEEEECCECTCCHHHHHHHHHH
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecC---CceEEEEECCCCCHHHHHHHHHHHh
Confidence 456778766644343444444444453322 222211 1111233347899999999998887
No 213
>PRK02886 hypothetical protein; Provisional
Probab=42.77 E-value=52 Score=23.37 Aligned_cols=39 Identities=5% Similarity=0.281 Sum_probs=27.5
Q ss_pred HhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee
Q 025401 61 PFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL 108 (253)
Q Consensus 61 ~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 108 (253)
.+.+||.|..+.-.. .|+ |.|.+.++|+..++.|....|
T Consensus 20 ~LrkyG~I~Y~Skr~--------kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 20 QLRKFGNVHYVSKRL--------KYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HHhhcCcEEEEeccc--------cEE-EEEECHHHHHHHHHHHhcCCC
Confidence 356899998765332 244 447789999999998876643
No 214
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=42.71 E-value=32 Score=29.63 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=22.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAI 68 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v 68 (253)
.....|+|||++++..-|..++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 3467799999999999999888765444
No 215
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=42.15 E-value=37 Score=23.84 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=25.7
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHhhCCCeecCeEEEEE
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
|-+++|.+.-. .+++-.+.+-..|-.+.|. |-. ..|||.|.. .++...+++.|....+..+.|.|+
T Consensus 3 lkfg~It~eeA-~~~QYeLsk~~~vyRvFiN-----gYa-r~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 3 LKFGNITPEEA-MVKQYELSKNEAVYRVFIN-----GYA-RNGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp EE--S-TTTTT-HHHHHTTTTTTTB-----------TTS-S--EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred cccCCCCHHHH-HHHHHHhhcccceeeeeec-----ccc-cceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 55677766532 2344445666666555552 222 368999974 477888888898888888887765
No 216
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=41.79 E-value=95 Score=20.01 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=30.7
Q ss_pred CHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCe
Q 025401 54 RPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQV 107 (253)
Q Consensus 54 te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 107 (253)
.-.+|-++|.+.| .|..+.+.... . .++..+.+.+.+.|.++|+. +|..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 3466778887776 67777664321 1 35666667777777777764 4443
No 217
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=41.56 E-value=72 Score=29.29 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=34.9
Q ss_pred CCCHHHHHHHhc----ccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 52 DCRPEDIRRPFE----QFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 52 ~~te~~L~~~F~----~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
+...-+|..+|. .+|-|+.+.|...+.. ....+.++.|.+.++|..|+..+
T Consensus 143 ~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p-~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 143 DVAGYDLTGLFVGSEGTLGIVTEATLKLLPKP-ENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCCCChhhhcccCCccceEEEEEEEEeecCC-CccEEEEEECCCHHHHHHHHHHH
Confidence 333446777774 3788888877655432 23456788999999999988654
No 218
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=41.31 E-value=1.1e+02 Score=29.31 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=27.9
Q ss_pred CceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 82 PRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 82 ~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
..|-|.| |+++++|.+||. ++..-.|..|.|.+.-++
T Consensus 382 ~~G~A~V-F~see~a~~ai~--~g~i~~gdVvViRyeGPk 418 (535)
T TIGR00110 382 FEGPAKV-FESEEEALEAIL--GGKIKEGDVVVIRYEGPK 418 (535)
T ss_pred EEEeEEE-ECCHHHHHHHHh--cCCCCCCeEEEEeCCCCC
Confidence 3455554 999999999996 566667888888876655
No 219
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=41.23 E-value=8.5 Score=29.67 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=38.2
Q ss_pred CCCHHHHHHHhcc----cCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 52 DCRPEDIRRPFEQ----FGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 52 ~~te~~L~~~F~~----~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
.++...|.+.+.+ .+.+.-..+- .++.++.|.++++++.++. .....|++..|.++.-.
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~--------~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG--------DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWS 90 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC--------CCeEEEEEEeccceeEEEe-cccccccccchhhhhhc
Confidence 3556666665543 3444333332 4689999999999999987 45567777766665433
No 220
>PRK02302 hypothetical protein; Provisional
Probab=40.41 E-value=59 Score=23.19 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=27.5
Q ss_pred HhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee
Q 025401 61 PFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL 108 (253)
Q Consensus 61 ~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 108 (253)
.+.+||.|..+.-.. .|+ |.|.+.++|+..++.|....|
T Consensus 22 ~LrkfG~I~Y~Skk~--------kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 22 KLSKYGDIVYHSKRS--------RYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HHhhcCcEEEEeccc--------cEE-EEEECHHHHHHHHHHHhcCCC
Confidence 356899998765332 244 447789999999998876543
No 221
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=40.22 E-value=48 Score=31.19 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=30.8
Q ss_pred CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 53 CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 53 ~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
|.+++|.+-|..+-.-.++.-+. +. .|++=+.|.++++|++.++.++..
T Consensus 90 iWdqELY~nf~y~q~r~ffhtFe----gd-dc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 90 IWDQELYQNFEYRQPRTFFHTFE----GD-DCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred eehHHhhhhceeccCccceeeec----cc-cceeeecccCHHHHHHHHHHHHHH
Confidence 45566777776555433332221 11 357778899999999988876544
No 222
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=39.21 E-value=1.2e+02 Score=29.09 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=27.7
Q ss_pred CceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccCC
Q 025401 82 PRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEENR 122 (253)
Q Consensus 82 ~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~~ 122 (253)
..|-|. .|+++++|.+||. ++..-.|..|.|.+.-++.
T Consensus 397 ~~GpA~-VF~see~a~~ai~--~g~I~~gdVvViRyeGPkG 434 (552)
T PRK00911 397 FTGPAR-VFDSEEEAMEAIL--AGKIKAGDVVVIRYEGPKG 434 (552)
T ss_pred eeeeEE-EECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCC
Confidence 345554 5999999999997 4666668888888765543
No 223
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=39.08 E-value=1.1e+02 Score=19.89 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=36.3
Q ss_pred CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 54 RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 54 te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
..+++.+.+..+-.|..|..+ +|...=++.|.+.+.++.+..+..
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~v----tG~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSV----TGEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEE----SSSSSEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEEE----eCCCCEEEEEEECCHHHHHHHHHH
Confidence 367788889999999999887 444556788999999999988554
No 224
>PRK10905 cell division protein DamX; Validated
Probab=38.52 E-value=56 Score=28.99 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=38.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEE--EEEEcCHHHHHHHHHhhCCC
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFG--FIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~a--fV~f~~~~~a~~Al~~l~g~ 106 (253)
...++|.|+.+. +++.|.+|..+.|. ....+.....+|. ..|. +-.|.+.++|+.||..|-..
T Consensus 245 a~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGk-pWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 245 SSHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQ-PWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CCceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCc-eEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 345678877664 55778888877753 3222322222232 1333 33789999999999987543
No 225
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.42 E-value=1e+02 Score=19.41 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=24.6
Q ss_pred CCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 53 CRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 53 ~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
-...+|..+|..++ .|..+.+... ......+..|.+.+. +...+++.|
T Consensus 11 g~l~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~i~i~v~~~-~~~~~i~~l 59 (71)
T cd04903 11 GAIAKVTSVLADHEINIAFMRVSRK--EKGDQALMVIEVDQP-IDEEVIEEI 59 (71)
T ss_pred ChHHHHHHHHHHcCcCeeeeEEEec--cCCCeEEEEEEeCCC-CCHHHHHHH
Confidence 34667888887775 5656654321 112233444555544 444444444
No 226
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=37.87 E-value=27 Score=33.06 Aligned_cols=39 Identities=26% Similarity=0.455 Sum_probs=33.6
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 83 RGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 83 ~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
..++++.|++.+.+.+|+..++|..+.+..+.|..+...
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 469999999999999999999999988888777765543
No 227
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=37.65 E-value=67 Score=23.19 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=24.0
Q ss_pred HHHHhcccCCee-----EEEEcccCCCCCCceEEEEEEcCHHHHHHHH
Q 025401 58 IRRPFEQFGAIK-----DIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100 (253)
Q Consensus 58 L~~~F~~~G~v~-----~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 100 (253)
+..+|++||--- ++..+.. ...+.....|+|.+.+.|..+.
T Consensus 25 ~~~a~~~~Ggr~LvRGG~v~~lEG--~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 25 AKPAIEKFGGRYLVRGGEVETLEG--EWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred hHHHHHHhCCeeEeeCCCeeeccC--CCCcccEEEEEcCCHHHHHHHh
Confidence 456777887311 1222221 1233567999999998877653
No 228
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=37.63 E-value=80 Score=24.68 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=33.6
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-cC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHH
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQ-FG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 101 (253)
.||.-++...+..+|++.+++ |+ .|..|..+.-+ .+ .--|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g--~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DG--LKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CC--ceEEEEEECCCCcHHHHHH
Confidence 445556778888998888876 44 45555443332 12 2358999976666554433
No 229
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=37.59 E-value=69 Score=32.66 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=26.8
Q ss_pred CceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 82 PRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 82 ~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+||-|||-..+..++.||+.|-+..+. +.|.|
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lV 241 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLV 241 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhhheec-cEEEE
Confidence 5899999999999999999988877666 44434
No 230
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=37.57 E-value=1.4e+02 Score=20.84 Aligned_cols=47 Identities=15% Similarity=0.287 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHhcc-cC----CeeEEEEcccCCCCCCceEEEEEEcCHHHHHH
Q 025401 51 HDCRPEDIRRPFEQ-FG----AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAE 98 (253)
Q Consensus 51 ~~~te~~L~~~F~~-~G----~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 98 (253)
.+.+..+|++.+.+ |+ .|.-..|......+...|||+| |++.+.++.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 34566777665543 33 2222233334334556777776 777776654
No 231
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=37.25 E-value=25 Score=30.06 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFE 63 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~ 63 (253)
...++|+|||+.++..-|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45688999999999998888886
No 232
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=37.22 E-value=24 Score=31.42 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=4.8
Q ss_pred HHHHHHHhccc
Q 025401 55 PEDIRRPFEQF 65 (253)
Q Consensus 55 e~~L~~~F~~~ 65 (253)
..+|.+.|+.|
T Consensus 171 p~dLw~WyEpy 181 (453)
T KOG2888|consen 171 PADLWDWYEPY 181 (453)
T ss_pred hhHHHHHhhhh
Confidence 34444444443
No 233
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=37.13 E-value=1.4e+02 Score=20.64 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=32.6
Q ss_pred EEEcCCCCCCCHHHHHHHhc-------ccCCeeEEEEcccCCCCC---CceEE-EEEEcCHHHHHHH
Q 025401 44 LLVRNLRHDCRPEDIRRPFE-------QFGAIKDIYLPRDYYSGE---PRGFG-FIQFVEPDDAAEA 99 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~-------~~G~v~~v~i~~~~~~g~---~~g~a-fV~f~~~~~a~~A 99 (253)
|.+-.|...++++++.+++. +.-.|..+.+-.+..... .--++ +++|++.++.+.-
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y 70 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAY 70 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHH
Confidence 44456888888888755443 344566666544422221 22333 5789988876543
No 234
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=37.00 E-value=1e+02 Score=26.08 Aligned_cols=66 Identities=21% Similarity=0.252 Sum_probs=45.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEE-EEcccC---CCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDI-YLPRDY---YSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~---~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
....+-+|.|.-||-.-.++-|+.+|+..|=-+.+ .+..+. .-|.+ .|..|+.....-.+.||..|
T Consensus 114 ~~~~pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S-~y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 114 ATPIPLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDS-RYVDLTLTGTVRLADALNHL 183 (245)
T ss_pred CCCCceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCC-cceEEEEeeeEEHHHHHhhh
Confidence 34556788899999888999999999999943333 333332 12333 47778887766677777654
No 235
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.53 E-value=1.8e+02 Score=23.30 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=39.4
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
|-| +|+..+.++-|+++.+-+|.|.+. -.+ .-.+.|-+.+..+.||+.|
T Consensus 115 iRv-~l~~~i~~erl~ei~E~~gvI~Ef--ee~--------~~V~I~Gdke~Ik~aLKe~ 163 (169)
T PF09869_consen 115 IRV-KLKKPIQEERLQEISEWHGVIFEF--EED--------DKVVIEGDKERIKKALKEF 163 (169)
T ss_pred EEE-ecCccchHHHHHHHHHHhceeEEe--cCC--------cEEEEeccHHHHHHHHHHH
Confidence 444 799999999999999999988766 111 2477889999999999875
No 236
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=36.40 E-value=25 Score=20.54 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHhcccCC
Q 025401 51 HDCRPEDIRRPFEQFGA 67 (253)
Q Consensus 51 ~~~te~~L~~~F~~~G~ 67 (253)
.++++++|+++|.+...
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46889999999987643
No 237
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=36.18 E-value=1.1e+02 Score=23.38 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=20.9
Q ss_pred CceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 82 PRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 82 ~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
.+||.||++...++...+|..+.|.
T Consensus 37 fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 37 LKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCcEEEEEEECcHHHHHHHhCCCCE
Confidence 6899999999888888888777664
No 238
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=36.10 E-value=89 Score=25.79 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=34.6
Q ss_pred CCHHHHHHHhcccCC---eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 53 CRPEDIRRPFEQFGA---IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 53 ~te~~L~~~F~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
.+.+++.++...+|. |+...|+.. |..++-+.....+.++|..+...|-|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~G---gRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAG---GRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSS---TTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeec---CcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 456777777777664 445555432 333432333345889999999999999887
No 239
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=35.98 E-value=1e+02 Score=29.62 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=35.0
Q ss_pred CHHHHHHHh----cccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC
Q 025401 54 RPEDIRRPF----EQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD 104 (253)
Q Consensus 54 te~~L~~~F----~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 104 (253)
+.-+|..+| ..+|.|+++.|...+. .....++++.|.+.++|..|+..+.
T Consensus 279 ~g~dL~~l~~GseGtLGIIT~~tlrl~p~-P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 279 AGYDLTRLVIGSEGTLGVITEVTLRLQKI-PQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCccHHHHhccCCCceEEEEEEEEEeecC-CcceEEEEEEcCCHHHHHHHHHHHH
Confidence 445787776 3678888888765432 2234578899999999988877643
No 240
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=35.62 E-value=1.3e+02 Score=24.33 Aligned_cols=19 Identities=26% Similarity=0.017 Sum_probs=12.2
Q ss_pred CHHHHHHHHHhhCCCeecCe
Q 025401 92 EPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 92 ~~~~a~~Al~~l~g~~i~g~ 111 (253)
+.+.|..||. +-...|-..
T Consensus 141 ~~~~AkeAlr-~A~~KLP~~ 159 (172)
T TIGR00279 141 NFDVAKEALR-RAAMKFPVP 159 (172)
T ss_pred CHHHHHHHHH-HHhccCCCc
Confidence 5588888888 444555443
No 241
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=35.61 E-value=81 Score=28.34 Aligned_cols=51 Identities=14% Similarity=-0.057 Sum_probs=34.2
Q ss_pred HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEE
Q 025401 55 PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGREL 113 (253)
Q Consensus 55 e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 113 (253)
-++|+.+|..---+..+....+ --||.|.+..+.++-|..+++..+.+..|
T Consensus 264 Y~~Le~HF~~~hy~ct~qtc~~--------~k~~vf~~~~el~~h~~~~h~~~~~~~~~ 314 (493)
T COG5236 264 YEDLEAHFRNAHYCCTFQTCRV--------GKCYVFPYHTELLEHLTRFHKVNARLSEI 314 (493)
T ss_pred HHHHHHHhhcCceEEEEEEEec--------CcEEEeccHHHHHHHHHHHhhcccccCcC
Confidence 4567777766544444433322 24888999988888888889887777654
No 242
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=35.54 E-value=61 Score=26.63 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=29.5
Q ss_pred CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 54 RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 54 te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
+.++..+++..++.-. +.|..+ +...|-+.+.+.+.++|..||..|
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHHh
Confidence 5677777777776433 334333 333344566669999999999875
No 243
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=35.40 E-value=1.3e+02 Score=28.11 Aligned_cols=67 Identities=7% Similarity=-0.011 Sum_probs=41.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccC----CeeEEEEcccCCCCC--------CceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFG----AIKDIYLPRDYYSGE--------PRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G----~v~~v~i~~~~~~g~--------~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
.+.+|.+.+=-+-++.+.|++++.... .+.-+.+..+..+|. ..-.++||.++..++++.|..+|.-
T Consensus 96 ~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNtG 174 (460)
T COG1207 96 DGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTG 174 (460)
T ss_pred CCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEeee
Confidence 345677766667788999998776552 333233222222321 2337889999998888888776653
No 244
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=34.90 E-value=1.1e+02 Score=22.54 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=30.6
Q ss_pred HHHHHhcccCCeeEEEEccc-----CC----------CCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 57 DIRRPFEQFGAIKDIYLPRD-----YY----------SGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 57 ~L~~~F~~~G~v~~v~i~~~-----~~----------~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
..-++|..||-+..+...-+ +. .+..--|.+|+|.+.+...+|..++
T Consensus 24 ~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 24 KAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 34678999997765544322 11 1223358899999999988887764
No 245
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=34.41 E-value=1.2e+02 Score=18.98 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=19.0
Q ss_pred EEEcCCCCCCCHHHHHHHhcccC-CeeEEEEcc
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQFG-AIKDIYLPR 75 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~ 75 (253)
|+|..-...-.-.+|-.+|.+++ .|..+.+..
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~ 34 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGR 34 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEec
Confidence 34433333345677888888876 566666543
No 246
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=34.31 E-value=40 Score=25.82 Aligned_cols=36 Identities=11% Similarity=0.022 Sum_probs=29.0
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEccc
Q 025401 41 PTSLLVRNLRHD-CRPEDIRRPFEQFGAIKDIYLPRD 76 (253)
Q Consensus 41 ~~~i~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~ 76 (253)
+.-|.|-|||.. .+++.|+++...+|++..++....
T Consensus 104 ~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 104 PVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred chhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 344778899987 677889999999999998887543
No 247
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=34.30 E-value=1.7e+02 Score=20.86 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHH----------hcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 48 NLRHDCRPEDIRRP----------FEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 48 nLp~~~te~~L~~~----------F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
+||.+++.+++.++ +..-|.+..+.-+ .|....++++.-++.++....|..|.-..+.
T Consensus 10 ~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~----~G~~~n~~Ifdv~d~~eLh~lL~sLPL~p~m 77 (91)
T PF02426_consen 10 NVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRV----VGRYANVSIFDVEDNDELHELLSSLPLFPYM 77 (91)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEe----cCCcceEEEEECCCHHHHHHHHHhCCCccce
Confidence 78888888765544 3356888877664 3445678888889999988888777655544
No 248
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=34.08 E-value=7.2 Score=25.22 Aligned_cols=37 Identities=27% Similarity=0.550 Sum_probs=18.6
Q ss_pred CceEEEEEEcC-HHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 82 PRGFGFIQFVE-PDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 82 ~~g~afV~f~~-~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
.+|||||...+ .++.--.-..|++. ++|-.+.|.+..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEec
Confidence 47999999987 33332233334433 345555565544
No 249
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=33.83 E-value=1.6e+02 Score=28.74 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=27.5
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccCC
Q 025401 83 RGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEENR 122 (253)
Q Consensus 83 ~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~~ 122 (253)
.|-| +.|+++++|.+||. ++..-.|..|.|.|.-++.
T Consensus 448 ~GpA-~VFdsee~a~~ai~--~g~I~~gdVvVIRyeGPkG 484 (615)
T PRK12448 448 TGPA-RVFESQDDAVEAIL--GGKVKAGDVVVIRYEGPKG 484 (615)
T ss_pred EEeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCC
Confidence 4444 45999999999996 4666678888888765544
No 250
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=33.77 E-value=58 Score=26.94 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=34.9
Q ss_pred CCHHHHH---HHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCe
Q 025401 53 CRPEDIR---RPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 53 ~te~~L~---~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 111 (253)
|++++|. .++.+||. .++ |+.+..++...-..|+.=.+.+.+..|++.+....+...
T Consensus 39 i~~~~lk~F~k~AkKyGV-~ya-v~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~~~ 98 (204)
T PF12687_consen 39 ITDEDLKEFKKEAKKYGV-DYA-VKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLKKE 98 (204)
T ss_pred cCHhhHHHHHHHHHHcCC-ceE-EeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhhhh
Confidence 4455554 44668874 333 344544444444566666788888899988777665543
No 251
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=33.49 E-value=1.7e+02 Score=28.25 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=27.6
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccCC
Q 025401 83 RGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEENR 122 (253)
Q Consensus 83 ~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~~ 122 (253)
.|-| +.|+++++|.+||. ++..-.|..|.|.|.-++.
T Consensus 415 eGpA-~VFds~e~~~~ai~--~g~l~~g~VvVIRyeGPkG 451 (575)
T COG0129 415 EGPA-RVFDSQEDAIKAIL--DGELKAGDVVVIRYEGPKG 451 (575)
T ss_pred Eeee-EEECCHHHHHHHHh--cCCCCCCeEEEEeccCCCC
Confidence 3444 45999999999995 6666668888888866654
No 252
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=33.03 E-value=1.5e+02 Score=21.55 Aligned_cols=46 Identities=17% Similarity=0.426 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhc-ccCCeeEEEEc----ccCCCCCCceEEEEEEcCHHHHHH
Q 025401 52 DCRPEDIRRPFE-QFGAIKDIYLP----RDYYSGEPRGFGFIQFVEPDDAAE 98 (253)
Q Consensus 52 ~~te~~L~~~F~-~~G~v~~v~i~----~~~~~g~~~g~afV~f~~~~~a~~ 98 (253)
+.+..+|++-+. .|+.=.++.++ .....+...|||.| |++.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 456667665443 34422222222 22223556677776 666665544
No 253
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=32.80 E-value=1.1e+02 Score=23.60 Aligned_cols=45 Identities=16% Similarity=0.420 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhcc-cC----CeeEEE-EcccCCCCCCceEEEEEEcCHHHHH
Q 025401 52 DCRPEDIRRPFEQ-FG----AIKDIY-LPRDYYSGEPRGFGFIQFVEPDDAA 97 (253)
Q Consensus 52 ~~te~~L~~~F~~-~G----~v~~v~-i~~~~~~g~~~g~afV~f~~~~~a~ 97 (253)
+++..+|.+.+.+ |+ +++.|. |......+...|||.| |++++.|.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 5667777665543 44 122221 2222233556777776 66666544
No 254
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=32.65 E-value=36 Score=30.29 Aligned_cols=9 Identities=33% Similarity=0.873 Sum_probs=4.8
Q ss_pred ceEEEEEEc
Q 025401 83 RGFGFIQFV 91 (253)
Q Consensus 83 ~g~afV~f~ 91 (253)
.||-||-|.
T Consensus 160 lGFmYiRYt 168 (453)
T KOG2888|consen 160 LGFMYIRYT 168 (453)
T ss_pred heeeEEeec
Confidence 355556553
No 255
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=32.59 E-value=79 Score=24.07 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=22.3
Q ss_pred EEEEEEcC--------HHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 85 FGFIQFVE--------PDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 85 ~afV~f~~--------~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
-|||+|++ -|-|...++.+|.+.--|..|.|++-.
T Consensus 20 GAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ 62 (129)
T COG1098 20 GAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLD 62 (129)
T ss_pred ceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEe
Confidence 36777766 245666666677666667777766533
No 256
>PF09507 CDC27: DNA polymerase subunit Cdc27; InterPro: IPR019038 This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterised by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. ; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 1U76_B 3E0J_B.
Probab=32.58 E-value=25 Score=32.07 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=31.9
Q ss_pred CCCCCCCHHHHHHHhccc-----CCeeEEEEcccCCCCCCceEEE-------EEEcCHHHHHHHHHhhCC
Q 025401 48 NLRHDCRPEDIRRPFEQF-----GAIKDIYLPRDYYSGEPRGFGF-------IQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 48 nLp~~~te~~L~~~F~~~-----G~v~~v~i~~~~~~g~~~g~af-------V~f~~~~~a~~Al~~l~g 105 (253)
+|+.++..+.|.+|+..+ +.|.-++|+..........+.. |.+...++++.|+..|..
T Consensus 13 ~ihvn~AK~~L~ef~~~~~~k~~~~l~atYlvsG~~k~~~~~~~~~~~~~~~v~Lv~e~~Le~~k~~f~~ 82 (430)
T PF09507_consen 13 GIHVNQAKQMLYEFHEKQNAKKPGSLHATYLVSGWLKDNGEPSHNDEEMDYSVILVREEDLEEAKAKFEK 82 (430)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHS-S-EEEEEEEEEEESSSSEEEE-------EEEEETTTHHHHHHH-SS
T ss_pred CCCHHHHHHHHHHHHHhccccCCCceEEEEEEEEEeCCCCCccccccccceeEEEeeHHHHHHHHHhccc
Confidence 455566678899999887 5777777765432222222222 555556677777776653
No 257
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=32.36 E-value=51 Score=27.91 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=20.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCC
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGA 67 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~ 67 (253)
.++|+|||+.++.+.|..++..++.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 4789999999999999999974443
No 258
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=32.19 E-value=53 Score=22.29 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=33.2
Q ss_pred cCCCCCCCHHHHHHHhc-ccCCe-eEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC
Q 025401 47 RNLRHDCRPEDIRRPFE-QFGAI-KDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 47 ~nLp~~~te~~L~~~F~-~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 105 (253)
-.++..++.++|.+.+. .|+.. ..+.|...... | -+|.+.+.++.+.|++.+..
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~d----g-D~V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDED----G-DLVTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETT----S-SEEEESSHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCC----C-CEEEeCCHHHHHHHHHHHHh
Confidence 45677778887766554 34432 22222221112 2 48999999999999997644
No 259
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=32.11 E-value=1.3e+02 Score=18.76 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=24.8
Q ss_pred CHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEE-cCHHHHHHHHHhh
Q 025401 54 RPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQF-VEPDDAAEAKRHM 103 (253)
Q Consensus 54 te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f-~~~~~a~~Al~~l 103 (253)
.-.+|.++|...| .|..+.+...... ..++|+.+ .+..+++.+++.|
T Consensus 13 ~l~~v~~~la~~~inI~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 61 (66)
T PF01842_consen 13 ILADVTEILADHGINIDSISQSSDKDG---VGIVFIVIVVDEEDLEKLLEEL 61 (66)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEESST---TEEEEEEEEEEGHGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHeEEEecCCC---ceEEEEEEECCCCCHHHHHHHH
Confidence 3466777787776 4666665544321 23444433 3445555555444
No 260
>COG1839 Uncharacterized conserved protein [Function unknown]
Probab=32.02 E-value=2e+02 Score=22.53 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=20.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQF 65 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~ 65 (253)
+....|.||.-.+-.|.+||.+.+-..
T Consensus 13 Pe~~nvIiGqshFIkTVeDL~ealvt~ 39 (162)
T COG1839 13 PEGVNVIIGQSHFIKTVEDLYEALVTA 39 (162)
T ss_pred cCCceEEEeechhheeHHHHHHHHHhc
Confidence 345789999888888999998887543
No 261
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=31.98 E-value=76 Score=23.02 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=27.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE 92 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 92 (253)
..-|||++++..+-+.--+.+.+.++. -.+.|+.. +....||+|.++-+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~--~~~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWA--TNTESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEc--CCCCCCcEEEecCC
Confidence 445999999887765433333333332 22222222 22335899988865
No 262
>COG5584 Predicted small secreted protein [Function unknown]
Probab=31.82 E-value=79 Score=22.88 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHHHhcccCCeeEEEEcccCC
Q 025401 48 NLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY 78 (253)
Q Consensus 48 nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~ 78 (253)
||..+..-+-+++.|.++++|.--+|...+.
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe 59 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPE 59 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEecc
Confidence 5566666677899999999998777766543
No 263
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=31.72 E-value=34 Score=24.28 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=25.8
Q ss_pred CCeEEEcCCCCCCCHH---HHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC
Q 025401 41 PTSLLVRNLRHDCRPE---DIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE 92 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~---~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 92 (253)
..-|||++++..+-+. .|.+.+.+-|.+. |+.. +....||+|-++-+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~av---m~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKGSLV---ITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCccEE---EEEe--CCCCCCcEEEecCC
Confidence 4459999998877654 3333322223332 2222 22246788887754
No 264
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.33 E-value=65 Score=27.67 Aligned_cols=58 Identities=14% Similarity=0.033 Sum_probs=36.4
Q ss_pred CCeEEEcCCCCC-----CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc---CHHHHHHHHHhhC
Q 025401 41 PTSLLVRNLRHD-----CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV---EPDDAAEAKRHMD 104 (253)
Q Consensus 41 ~~~i~V~nLp~~-----~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~Al~~l~ 104 (253)
..+|.|-|++.. .+.++|..++..++....+.++.| .+.+|+.-. +.+....+++.|.
T Consensus 137 ~v~l~lEN~~~~~~~l~~~~~el~~ll~~~~~~~~lg~~lD------t~H~~~~g~~~~~~~~~~~~~~~~~ 202 (274)
T TIGR00587 137 IVTILLENMAGQGSELGRSFEELAYIIKVIVDKRRIGVCLD------TCHFFAAGYDITTKAYFEVVKNEFD 202 (274)
T ss_pred CCEEEEEeCCCCCCccCCCHHHHHHHHHhcCCCCceEEEEE------hhhHHhcCCCcCCHHHHHHHHHHHH
Confidence 478999998732 478899999988875445666666 233443322 3455555655443
No 265
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=30.96 E-value=63 Score=29.60 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=36.7
Q ss_pred CCCCCCCHHHHHHHhc----ccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHH
Q 025401 48 NLRHDCRPEDIRRPFE----QFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100 (253)
Q Consensus 48 nLp~~~te~~L~~~F~----~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 100 (253)
+|-.+-|--+|+++|- ..|.|+.|.|+..+ ..+....||+-.++.+++++++
T Consensus 231 slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~-kpksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232|consen 231 SLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPP-KPKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred hhcccCccccchhheecCCceeeEEeeEEEeecC-CCcceeEEEEccccHHHHHHHH
Confidence 4555666778999984 56788888887654 3344568899888887777654
No 266
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.99 E-value=1.5e+02 Score=18.94 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=27.9
Q ss_pred CHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 54 RPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 54 te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
.-.+|..+|.++| .|..+.+..... + ..+...+.+...++++.+++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~-~-~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIRE-G-IGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeec-C-CcEEEEEEECCHHHHHHHHHHH
Confidence 3567888888776 566665433211 1 2455667776555666666554
No 267
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=29.78 E-value=50 Score=28.42 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=18.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhcc
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQ 64 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~ 64 (253)
.++|+|||+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999998888888754
No 268
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=29.74 E-value=1.8e+02 Score=21.38 Aligned_cols=43 Identities=9% Similarity=0.116 Sum_probs=26.2
Q ss_pred HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHH
Q 025401 55 PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100 (253)
Q Consensus 55 e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 100 (253)
+.+|.+++.+.|. .+-.|..+..+ +.-||++++.+.+....+|
T Consensus 26 WPE~~a~lk~agi-~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 26 WPELLALLKEAGI-RNYSIFLDEEE--NLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred cHHHHHHHHHcCC-ceeEEEecCCc--ccEEEEEEEcChHHHHHHH
Confidence 3467788888874 44444444222 3569999999655544444
No 269
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=29.73 E-value=2.4e+02 Score=27.37 Aligned_cols=37 Identities=16% Similarity=0.095 Sum_probs=26.5
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCCe-e-cCeEEEEEEcccCC
Q 025401 83 RGFGFIQFVEPDDAAEAKRHMDGQV-L-LGRELTVVFAEENR 122 (253)
Q Consensus 83 ~g~afV~f~~~~~a~~Al~~l~g~~-i-~g~~l~V~~a~~~~ 122 (253)
.|-|. .|+++++|.+||. ++.. | .|..|.|.+.-++.
T Consensus 401 ~G~A~-VF~see~a~~ai~--~g~i~i~~gdVvVIRyeGPkG 439 (571)
T PRK06131 401 EGRAV-VFEGYEDYKARID--DPDLDVDEDTVLVLRNAGPKG 439 (571)
T ss_pred EeeeE-EECCHHHHHHHHh--CCCcCCCCCeEEEEeCCCCCC
Confidence 45554 5999999999996 5553 2 68888888766554
No 270
>PRK12450 foldase protein PrsA; Reviewed
Probab=29.61 E-value=91 Score=27.46 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=29.5
Q ss_pred CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC
Q 025401 52 DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD 104 (253)
Q Consensus 52 ~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 104 (253)
.||+++|+++|..|.+ .+. ..+|.+.+.+.|+.+++.|.
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~------------~~~I~~~~~~~A~~i~~~l~ 170 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMT------------AEIMQFEKEEDAKAALEAVK 170 (309)
T ss_pred CCCHHHHHHHHHHhCc--cce------------eEEEEeCCHHHHHHHHHHHH
Confidence 4799999999998732 111 23577889999999999885
No 271
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=28.39 E-value=1.8e+02 Score=19.16 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=28.8
Q ss_pred CHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcC---HHHHHHHHHhhCC
Q 025401 54 RPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVE---PDDAAEAKRHMDG 105 (253)
Q Consensus 54 te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~---~~~a~~Al~~l~g 105 (253)
.-.+|.++|..+| .|..|.-.... .....-..||++.. ....+.+++.|..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~-~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSR-KGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecC-CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3567778888886 45555322211 11233456788874 4556666666543
No 272
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=28.34 E-value=22 Score=27.72 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=15.5
Q ss_pred ceEEEEEEcCHHHHHHHHHhh
Q 025401 83 RGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 83 ~g~afV~f~~~~~a~~Al~~l 103 (253)
-|..+|-|.+.++|++.++..
T Consensus 114 Mg~~~~aF~~~~~A~~F~~~~ 134 (149)
T PF05573_consen 114 MGPDLIAFASKEDAEAFAKEH 134 (149)
T ss_dssp TS--EEEES-HHHHHHHHHHT
T ss_pred CCCcccccCCHHHHHHHHHHc
Confidence 467899999999999999864
No 273
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.16 E-value=1.7e+02 Score=18.93 Aligned_cols=61 Identities=10% Similarity=-0.052 Sum_probs=34.2
Q ss_pred EEEcCCCCCCCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 105 (253)
|.|.-.+..-.-.+|...+...| .|..+.+.... .+......-|+..+.+.+...+..|..
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhc
Confidence 44444444455678888888776 56666654321 111111222455677777777766543
No 274
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=28.13 E-value=70 Score=22.93 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHhcccCCee-EEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC
Q 025401 49 LRHDCRPEDIRRPFEQFGAIK-DIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD 104 (253)
Q Consensus 49 Lp~~~te~~L~~~F~~~G~v~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 104 (253)
+.+.+++..|...|..-|.-. -..+-.| .=+.+|.|+|.+.+.+..|.+.|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD----~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKD----YWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccc----cceEeEEEECCChHHHHHHHHHHH
Confidence 445667777776665544211 1111111 114689999999999999988763
No 275
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=27.91 E-value=1.4e+02 Score=24.17 Aligned_cols=76 Identities=9% Similarity=0.128 Sum_probs=39.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEccc-CCCCCCceEE-EEEEcCHHH---HHHHHHhhCCCeecCeEEEEEE
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRD-YYSGEPRGFG-FIQFVEPDD---AAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~-~~~g~~~g~a-fV~f~~~~~---a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
+|.|.-=|..++-++|.++|-+.-+...+ ... .+-|. .|- -|-+.+.++ |++.++.|....+.+.+|.+++
T Consensus 59 ~V~V~yDp~~isy~~LL~~ff~ihDPT~~--nrQGnD~Gt--qYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI 134 (174)
T COG0225 59 AVEVTYDPKVISYEELLEVFFEIHDPTSL--NRQGNDRGT--QYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEI 134 (174)
T ss_pred EEEEEeCCccccHHHHHHHHheecCCCCC--CccCCcccc--cceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEe
Confidence 47776667778888888877543222111 111 00111 122 233344444 4455555666556666777776
Q ss_pred cccCC
Q 025401 118 AEENR 122 (253)
Q Consensus 118 a~~~~ 122 (253)
.....
T Consensus 135 ~p~~~ 139 (174)
T COG0225 135 EPAKN 139 (174)
T ss_pred ecccc
Confidence 55443
No 276
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=27.89 E-value=69 Score=28.64 Aligned_cols=61 Identities=18% Similarity=0.154 Sum_probs=35.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeE-----EEEccc-----CCCCCCceEEEEEEcCHHHHHHHHH
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKD-----IYLPRD-----YYSGEPRGFGFIQFVEPDDAAEAKR 101 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~-----v~i~~~-----~~~g~~~g~afV~f~~~~~a~~Al~ 101 (253)
...+||.++-..+..+.|..+-+..-+... +.++.. ..-.....|++|.|.|+++|+...+
T Consensus 160 a~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~ 230 (343)
T KOG2854|consen 160 AKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFAR 230 (343)
T ss_pred eeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHH
Confidence 456888888888876665544332222111 111100 0011234689999999999987666
No 277
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=27.81 E-value=24 Score=32.90 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 49 LRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 49 Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
+...+....+..+|+++|.++...+.... .++..|.|+ +.|..+|..++...|+.. |.+-++.+
T Consensus 205 p~ks~~s~~r~k~fee~g~~~r~el~p~~-----hg~~~vv~~--enan~~m~s~da~ei~~~-l~~~~ynp 268 (526)
T KOG2135|consen 205 PEKSRNSENRRKFFEEFGVLERGELCPTH-----HGCVPVVSK--ENANKTMKSEDAAEIMKT-LPPPGYNP 268 (526)
T ss_pred cccccccHHhhhhhHhhceeeeccccccc-----cccceeEee--ccccccccCCcchhhhhc-CCCCCcCC
Confidence 44557788899999999988766654332 345556555 666666666655555543 44444443
No 278
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=27.65 E-value=73 Score=31.45 Aligned_cols=11 Identities=9% Similarity=0.295 Sum_probs=5.4
Q ss_pred EEEEEcCHHHH
Q 025401 86 GFIQFVEPDDA 96 (253)
Q Consensus 86 afV~f~~~~~a 96 (253)
+||.|.++..+
T Consensus 695 ~~~k~~de~~~ 705 (877)
T KOG0151|consen 695 NPVKYDDEDRD 705 (877)
T ss_pred cccccchhhhH
Confidence 55556444433
No 279
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=27.64 E-value=61 Score=28.39 Aligned_cols=22 Identities=9% Similarity=0.079 Sum_probs=18.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhcc
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQ 64 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~ 64 (253)
.+.|+|||+.++...|..++..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4788999999999888888854
No 280
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=27.57 E-value=1.3e+02 Score=25.05 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=25.7
Q ss_pred eEEEcCCCCCCCHHH--------HHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC
Q 025401 43 SLLVRNLRHDCRPED--------IRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE 92 (253)
Q Consensus 43 ~i~V~nLp~~~te~~--------L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 92 (253)
.=||-.||.+++.++ ++++|..+|-+..+.|..+.. ..-.|.|.|.+
T Consensus 69 re~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~---~NpHaHim~t~ 123 (216)
T PF03389_consen 69 REFEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGP---RNPHAHIMFTT 123 (216)
T ss_dssp EEEEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETT---TEEEEEEEE--
T ss_pred eeeeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCC---CCCEEEEEeec
Confidence 345668999988765 344566678888888875321 34577777754
No 281
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=27.34 E-value=1.9e+02 Score=19.21 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=32.5
Q ss_pred CCC-CCCCHHHHHHHhc-ccCCe-eEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC
Q 025401 48 NLR-HDCRPEDIRRPFE-QFGAI-KDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD 104 (253)
Q Consensus 48 nLp-~~~te~~L~~~F~-~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 104 (253)
.++ ..++.++|.+.+. .|+.. ..+.|...... | .+|...+.++.+.|++.+.
T Consensus 15 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e----~-d~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 15 VVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDED----G-DLVTISSDEDLEEAIEEAR 69 (81)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCC----C-CEEEeCCHHHHHHHHHHHh
Confidence 445 7788888766553 44432 23333322111 2 6899999999999999764
No 282
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.18 E-value=93 Score=19.87 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=11.9
Q ss_pred CHHHHHHHHHhhCCCee
Q 025401 92 EPDDAAEAKRHMDGQVL 108 (253)
Q Consensus 92 ~~~~a~~Al~~l~g~~i 108 (253)
+.++++.|+..||...|
T Consensus 47 ~~~~~~~a~~~Lh~~f~ 63 (64)
T cd04917 47 KEEDKDEVVQRLHSRLF 63 (64)
T ss_pred eHHHHHHHHHHHHHHHh
Confidence 45778888888776543
No 283
>PRK11633 cell division protein DedD; Provisional
Probab=26.99 E-value=1.6e+02 Score=24.79 Aligned_cols=73 Identities=10% Similarity=0.004 Sum_probs=47.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEE-EEcCHHHHHHHHHhhCCC-eecCeEEE
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFI-QFVEPDDAAEAKRHMDGQ-VLLGRELT 114 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV-~f~~~~~a~~Al~~l~g~-~i~g~~l~ 114 (253)
..+.|.|+-|......+.|.+-+..-|--.++.-... ..|.. .-.|| =|.+.+.|+.++..|+.. -|.|..+.
T Consensus 148 ~~~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~-~~G~~-tRV~VGP~~sk~~ae~~~~~Lk~~~Gl~g~Vv~ 222 (226)
T PRK11633 148 KAYVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTP-VQGKI-TRIYVGPDASKDKLKGSLGELKQLSGLSGVVMG 222 (226)
T ss_pred CcEEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeec-CCCcE-EEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEe
Confidence 3478889988877777888888877776555543221 12221 12333 467899999999998874 66675543
No 284
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=26.90 E-value=1.1e+02 Score=26.89 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=47.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCC-CceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGE-PRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~-~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
..+.|.||-|......+.|..-+...|--..|. .. .+. ..-+-+--|.+.++|+.++..|...-|.+..|.
T Consensus 226 ~~~~lQvGAF~~~~~Ae~l~akL~~~G~~~~i~--~~--~g~~~yRV~vGPf~sr~~A~~~~~~Lk~~Gi~~~iv~ 297 (298)
T TIGR02223 226 RAAALQCGAYANKEQAESVRAKLAFLGISSKIT--TT--DGGKWYRVVSGPYKNKDDAEKDLNKLKVAGVAGCIIN 297 (298)
T ss_pred ccEEEEEeecCCHHHHHHHHHHHHhcCCceEEE--ec--CCceEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEee
Confidence 346788898888777788888888777333332 11 111 111222357788999999999988877777663
No 285
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=26.87 E-value=93 Score=28.06 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=32.2
Q ss_pred CCCeEEEcCCCC----CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHH
Q 025401 40 LPTSLLVRNLRH----DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100 (253)
Q Consensus 40 ~~~~i~V~nLp~----~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 100 (253)
....|||.|=+. .++.++|..++..... .+.|+.| -||++|.. +++...+
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvD--------EAY~eF~~-~~~~~l~ 198 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVID--------EAYIEFSP-ESSLELL 198 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEe--------CchhhcCC-chhhhhc
Confidence 356788875431 2678899999987755 3344444 39999998 4443333
No 286
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.83 E-value=1.5e+02 Score=21.10 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=27.1
Q ss_pred HhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee
Q 025401 61 PFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL 108 (253)
Q Consensus 61 ~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 108 (253)
.+.+||.|..+.-.. --.|.|.+.++.+..+..|....|
T Consensus 21 qLrkfG~v~Y~Skk~---------kY~vlYvn~~~ve~~~~kl~~~kf 59 (90)
T COG4471 21 QLRKFGDVHYVSKKS---------KYVVLYVNEQDVEQIVEKLSRLKF 59 (90)
T ss_pred HHHhcCCEEEEecce---------eEEEEEECHHHHHHHHHHHhhcee
Confidence 456899998764322 134567899999999988766543
No 287
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=26.82 E-value=79 Score=24.76 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=18.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcc
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQ 64 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~ 64 (253)
..++|+|+|+.++.+.|..++..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 45778999999988888888764
No 288
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=26.76 E-value=1.3e+02 Score=23.12 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=35.0
Q ss_pred HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 55 PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 55 e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
|.+|+..|- |.-+.++.|+... ....+-+..+.+.. ...+|..|.+..+.++.|.|....
T Consensus 2 e~~lkAa~l-~nf~~f~~WP~~~---~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAYL-YNFAKFIEWPDSA---PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHHH-HHhHhhccCCCCC---CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 445554442 1223344554331 22335566665554 455777889999999999987654
No 289
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=26.74 E-value=3e+02 Score=21.17 Aligned_cols=70 Identities=10% Similarity=0.207 Sum_probs=39.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEE------EEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDI------YLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v------~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
.|||..+. ...++.++|+-+-.+.-+ .|+.+-.||.+..+.|. |+++++....++..--.-..|+-|.+.
T Consensus 57 ~Iylvdid---eV~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtgdn~Kin~~-~~~kq~~Idiie~iyRga~KGKgiV~s 132 (142)
T KOG3414|consen 57 VIYLVDID---EVPDFVKMYELYDPPTVMFFFNNKHMKIDLGTGDNNKINFA-FEDKQEFIDIIETIYRGARKGKGIVQS 132 (142)
T ss_pred EEEEEecc---hhhhhhhhhcccCCceEEEEEcCceEEEeeCCCCCceEEEE-eccHHHHHHHHHHHHHhhhcCCeEEEC
Confidence 35554443 223444555544333222 23344456666655554 778888888888755555667777655
No 290
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=26.36 E-value=95 Score=24.43 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=36.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHH
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 100 (253)
...+||+|.-+..--+.--..+|+.|- +|..|.+..............|.+.+..+.+.++
T Consensus 86 ~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~~ 147 (153)
T PF14401_consen 86 FELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQDF 147 (153)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHHH
Confidence 345688876654444445577888885 6777777766432344455666666555544443
No 291
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=26.31 E-value=1.4e+02 Score=26.73 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=40.2
Q ss_pred CCCHHHHHHHhcc-c----CC--eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee-cCeEEEEEEcccCCC
Q 025401 52 DCRPEDIRRPFEQ-F----GA--IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL-LGRELTVVFAEENRK 123 (253)
Q Consensus 52 ~~te~~L~~~F~~-~----G~--v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i-~g~~l~V~~a~~~~~ 123 (253)
.|+.+.|+.+|.. | .. |++|........|+.+ +-|.+.+.+.++.++...++... .+..|.|-++.....
T Consensus 157 ~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIk--gavnl~~~~~~~~~f~~~~~~~~~~~~~i~IFhCefSq~ 234 (325)
T KOG3772|consen 157 YISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIK--GAVNLYSKELLQDFFLLKDGVPSGSKRVILIFHCEFSQE 234 (325)
T ss_pred ccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccc--cceecccHhhhhhhhccccccccccCceeEEEEeeeccc
Confidence 3667777777754 2 22 4455555554455555 34556667777777765666654 345555555554444
Q ss_pred C
Q 025401 124 K 124 (253)
Q Consensus 124 ~ 124 (253)
+
T Consensus 235 R 235 (325)
T KOG3772|consen 235 R 235 (325)
T ss_pred c
Confidence 3
No 292
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=26.31 E-value=2.1e+02 Score=19.19 Aligned_cols=51 Identities=22% Similarity=0.167 Sum_probs=29.3
Q ss_pred CHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcC---HHHHHHHHHhhCC
Q 025401 54 RPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVE---PDDAAEAKRHMDG 105 (253)
Q Consensus 54 te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~---~~~a~~Al~~l~g 105 (253)
.-.+|.++|.++| .|..+...... .....-..||+++. .++.+.+++.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~-~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSK-GGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcC-CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3566778888886 56666543321 22222345666663 5666777776655
No 293
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=26.18 E-value=3e+02 Score=20.99 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=20.8
Q ss_pred EEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 85 FGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 85 ~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
-|+.-|.+-+.|-.|...|-+..+.
T Consensus 115 raifm~kdge~a~e~k~fll~qd~~ 139 (164)
T KOG4357|consen 115 RAIFMFKDGEQAFEAKDFLLGQDFC 139 (164)
T ss_pred eEEEEEeChhHHHHHHHHhhccchh
Confidence 4888899999999999888777654
No 294
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=25.85 E-value=77 Score=21.24 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEc-ccCCCCCCceEEEEEEc-CHHHHHHHHHhhCCC
Q 025401 51 HDCRPEDIRRPFEQFGAIKDIYLP-RDYYSGEPRGFGFIQFV-EPDDAAEAKRHMDGQ 106 (253)
Q Consensus 51 ~~~te~~L~~~F~~~G~v~~v~i~-~~~~~g~~~g~afV~f~-~~~~a~~Al~~l~g~ 106 (253)
..+.+..|.++...|+.-..|..- .+...+..-|.-+|++. +.++.++|+..|...
T Consensus 12 ~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~ 69 (76)
T PF09383_consen 12 NSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQ 69 (76)
T ss_dssp CSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHT
T ss_pred CCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHC
Confidence 345666777888888754433221 12223456788889995 445667888776543
No 295
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=25.77 E-value=1.3e+02 Score=21.26 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=33.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc--CHHHHHHHHHhhCCC
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV--EPDDAAEAKRHMDGQ 106 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~--~~~~a~~Al~~l~g~ 106 (253)
.+|.-.||.. .-.|+.|+..++...+|....-..++...+.+||-|+ +.++.+..++.|+..
T Consensus 11 ~~~~v~~PE~--pGal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 11 ALFAVEFPER--PGALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp EEEEEE--BS--TTHCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred EEEEEECCCC--ccHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 3555566653 2357777777776554443332334446677777665 445556666666554
No 296
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=25.68 E-value=1.7e+02 Score=17.93 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=27.0
Q ss_pred HHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHH
Q 025401 55 PEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100 (253)
Q Consensus 55 e~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 100 (253)
-.+|-++|.+.| .|..+.+.... .......+++++.+.|.++|
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 345666676665 67777654331 23567777888877777665
No 297
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=25.32 E-value=78 Score=25.47 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=23.5
Q ss_pred CeEEEcCCCC--CC-CHHHHHHHhcccCCeeEEEEc
Q 025401 42 TSLLVRNLRH--DC-RPEDIRRPFEQFGAIKDIYLP 74 (253)
Q Consensus 42 ~~i~V~nLp~--~~-te~~L~~~F~~~G~v~~v~i~ 74 (253)
..+||-+.+. +. ..+.|.+...+||+|..+.+.
T Consensus 22 ~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~ 57 (195)
T PF01762_consen 22 KVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFV 57 (195)
T ss_pred EEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecc
Confidence 4577777776 32 234478888999999887764
No 298
>PRK10162 acetyl esterase; Provisional
Probab=25.30 E-value=1.9e+02 Score=25.24 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=34.4
Q ss_pred CCCeEEEcCCCCCCCH-HHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc-CHHHHHHHHHh
Q 025401 40 LPTSLLVRNLRHDCRP-EDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV-EPDDAAEAKRH 102 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te-~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~Al~~ 102 (253)
+++-|+++....-..+ ..+.+.+.+.|.-+.+.+... ..++|+.|. ..++|+.|++.
T Consensus 249 Pp~~i~~g~~D~L~de~~~~~~~L~~aGv~v~~~~~~g------~~H~f~~~~~~~~~a~~~~~~ 307 (318)
T PRK10162 249 PPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPG------TLHAFLHYSRMMDTADDALRD 307 (318)
T ss_pred CCeEEEecCCCcCcChHHHHHHHHHHcCCCEEEEEECC------CceehhhccCchHHHHHHHHH
Confidence 4556666777766553 346677778886555554433 346777775 34666666654
No 299
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=25.23 E-value=1.2e+02 Score=21.54 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=18.4
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 83 RGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 83 ~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
.||.||++...+++..+|..+.+.
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCCc
Confidence 499999998766667777776664
No 300
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=25.21 E-value=2.6e+02 Score=25.62 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=43.2
Q ss_pred CCHHHHHHHhcccC--C-eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC----CeecCeEEEEEEcccC
Q 025401 53 CRPEDIRRPFEQFG--A-IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG----QVLLGRELTVVFAEEN 121 (253)
Q Consensus 53 ~te~~L~~~F~~~G--~-v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g----~~i~g~~l~V~~a~~~ 121 (253)
.+.+++..+..++| + |+..++.. .|..+.=+...-++.++|..+.+.|-| +.+.|+.+..-+..+.
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~a---GGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~ 98 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVHA---GGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEA 98 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeeee---cCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEec
Confidence 46778888888886 3 34445543 233343344444689999999999888 7888887765555443
No 301
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.15 E-value=1.9e+02 Score=18.51 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=27.7
Q ss_pred CHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEc--CHHHHHHHHHhhCCCe
Q 025401 54 RPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFV--EPDDAAEAKRHMDGQV 107 (253)
Q Consensus 54 te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~--~~~~a~~Al~~l~g~~ 107 (253)
.-..|.++|.++| .|..+..... ........+|.++ +.+++.++|+. .|..
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~--~~~~~~~v~i~v~~~~~~~~~~~L~~-~G~~ 67 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPS--KEEDNKILVFRVQTMNPRPIIEDLRR-AGYE 67 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecc--CCCCeEEEEEEEecCCHHHHHHHHHH-CCCe
Confidence 4456778888876 5666654332 1222334455554 55566666663 4443
No 302
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=25.07 E-value=1.8e+02 Score=21.39 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=13.3
Q ss_pred CCeEEEcCCCCCCCHHHHH
Q 025401 41 PTSLLVRNLRHDCRPEDIR 59 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~ 59 (253)
...||||+++.....+.|.
T Consensus 6 ~~~l~~g~~~~~~d~~~L~ 24 (139)
T cd00127 6 TPGLYLGSYPAASDKELLK 24 (139)
T ss_pred cCCeEECChhHhcCHHHHH
Confidence 4569999999766555543
No 303
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=24.69 E-value=2.2e+02 Score=24.13 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=29.1
Q ss_pred CCCeEEEcCCCCCC--CHHHHHHHhcccCCee----EEEEcccCCCCCCceEEEEEEc
Q 025401 40 LPTSLLVRNLRHDC--RPEDIRRPFEQFGAIK----DIYLPRDYYSGEPRGFGFIQFV 91 (253)
Q Consensus 40 ~~~~i~V~nLp~~~--te~~L~~~F~~~G~v~----~v~i~~~~~~g~~~g~afV~f~ 91 (253)
.+..|+|--|..+. |..+|+.+|.++|-.. .|.++.+. .++|+|.
T Consensus 93 ~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~ 143 (238)
T TIGR01033 93 GGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVP 143 (238)
T ss_pred CceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEEC
Confidence 34567787777664 5789999999987532 24444442 4666664
No 304
>PRK12378 hypothetical protein; Provisional
Probab=24.58 E-value=2.1e+02 Score=24.23 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=20.9
Q ss_pred CCeEEEcCCCCCC--CHHHHHHHhcccCC
Q 025401 41 PTSLLVRNLRHDC--RPEDIRRPFEQFGA 67 (253)
Q Consensus 41 ~~~i~V~nLp~~~--te~~L~~~F~~~G~ 67 (253)
+..|+|--|..+. |..+|+.+|.++|-
T Consensus 91 GvaiiVe~lTDN~nRt~~~vr~~f~K~gg 119 (235)
T PRK12378 91 GVMVIVECLTDNVNRTVANVRSAFNKNGG 119 (235)
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHhhcCC
Confidence 4568888787764 57889999999864
No 305
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=24.34 E-value=3.8e+02 Score=21.96 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=4.9
Q ss_pred EEEEEcCHHHH
Q 025401 86 GFIQFVEPDDA 96 (253)
Q Consensus 86 afV~f~~~~~a 96 (253)
|=|.+++.+..
T Consensus 81 APIylenk~qI 91 (215)
T KOG3262|consen 81 APIYLENKEQI 91 (215)
T ss_pred Cceeecchhhh
Confidence 34444444443
No 306
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=24.28 E-value=83 Score=27.90 Aligned_cols=63 Identities=13% Similarity=0.079 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 48 NLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 48 nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
..-..++.++|.++|..--++ ... .+ --..+|=++.+..+|+.|++.|... .-..++.|.+.-
T Consensus 136 ~Y~~~~~~~el~~~~k~qle~-----~~~--~g-vD~L~fETip~~~EA~a~l~~l~~~-~~~~p~~is~t~ 198 (317)
T KOG1579|consen 136 IYGDNVEFEELYDFFKQQLEV-----FLE--AG-VDLLAFETIPNVAEAKAALELLQEL-GPSKPFWISFTI 198 (317)
T ss_pred ccccccCHHHHHHHHHHHHHH-----HHh--CC-CCEEEEeecCCHHHHHHHHHHHHhc-CCCCcEEEEEEe
Confidence 334567888999999753221 111 00 1235777888999999999977654 344555555544
No 307
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=24.27 E-value=1.4e+02 Score=26.09 Aligned_cols=40 Identities=5% Similarity=0.248 Sum_probs=28.1
Q ss_pred CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC
Q 025401 52 DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 52 ~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 105 (253)
.+|+++|+.+|..+.+ .+ ....|.+.+.+.|+.+++.|..
T Consensus 128 ~Vtd~ei~~~y~~~~~--~~------------~v~hIlv~~~~~A~~v~~~l~~ 167 (298)
T PRK04405 128 KVTNSQLKKAWKSYQP--KV------------TVQHILVSKKSTAETVIKKLKD 167 (298)
T ss_pred CCCHHHHHHHHHHhhh--hE------------EEEEEEecChHHHHHHHHHHHC
Confidence 5799999999987632 11 1355666778888888887643
No 308
>PLN02655 ent-kaurene oxidase
Probab=24.23 E-value=1.4e+02 Score=27.56 Aligned_cols=49 Identities=18% Similarity=0.117 Sum_probs=34.3
Q ss_pred EEcCCCCCC---CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 45 LVRNLRHDC---RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 45 ~V~nLp~~~---te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
+||||..-. ....|.+++.+||.|..+.+. +.-+|...+++.++.++.+
T Consensus 9 ~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~pe~~k~il~~ 60 (466)
T PLN02655 9 VIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTG---------ASSVVVLNSTEVAKEAMVT 60 (466)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEEC---------CEeEEEeCCHHHHHHHHHh
Confidence 567764321 246788889999998777663 2357777889988888763
No 309
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=24.17 E-value=2.1e+02 Score=24.89 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=28.5
Q ss_pred HhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 61 PFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 61 ~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
.|..||.|..|........+..+-.-|+...-. +...++.....+.|-...|.-.|+.
T Consensus 52 ~f~~~GdV~alkaEe~~d~~~gkl~L~A~i~P~-~~Lv~~nk~gQKlftSiEi~pnFa~ 109 (276)
T PF05929_consen 52 PFGNYGDVLALKAEEIDDGGKGKLALFAQIDPN-DELVELNKAGQKLFTSIEIDPNFAD 109 (276)
T ss_pred ccccccceEEEEEEEcccCCCCeEEEEEEeCCC-HHHHHHHHcCCEEEEEEEecccccc
Confidence 478899998887655433222232334444433 3333334333334444444444444
No 310
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=24.15 E-value=2.5e+02 Score=19.45 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=33.6
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-cCC--eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQ-FGA--IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~-~G~--v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
+....|++.++-++|.+.+.+ |+. ...+.|..-...| -+|...+-++.+.|+..+
T Consensus 11 ~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddeg-----d~v~ltsd~DL~eai~i~ 68 (82)
T cd06407 11 KIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDE-----EWVLLTCDADLEECIDVY 68 (82)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCC-----CeEEeecHHHHHHHHHHH
Confidence 555578889898888766643 332 1244443322222 367777888888888754
No 311
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=24.12 E-value=2.5e+02 Score=22.48 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=22.0
Q ss_pred cCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 91 VEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 91 ~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
.+.++..+|++.++.....|+.+.|.-
T Consensus 90 Ps~~~i~~aVeFi~k~asLGktvYVHC 116 (183)
T KOG1719|consen 90 PSLENIQKAVEFIHKNASLGKTVYVHC 116 (183)
T ss_pred CCHHHHHHHHHHHHhccccCCeEEEEe
Confidence 478889999998888888898877653
No 312
>PLN02707 Soluble inorganic pyrophosphatase
Probab=24.08 E-value=58 Score=28.20 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=24.9
Q ss_pred HHHHHHhcccCCeeEEEEcccCCCCCCceEEEE-EEcCHHHHHHHHHhhCC
Q 025401 56 EDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFI-QFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 56 ~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV-~f~~~~~a~~Al~~l~g 105 (253)
++|+++|..|-... . ....-|||+ +|.+.+.|.+.|+..+.
T Consensus 208 ~~I~~fF~~YK~~e------G---K~~n~~~~~~~~~~~~~A~~vI~e~~~ 249 (267)
T PLN02707 208 TAIRDWFRDYKIPD------G---KPANKFGLDNKPMDKDYALKVIEETNE 249 (267)
T ss_pred HHHHHHHHHhcCCC------C---CceeeccccCCcCCHHHHHHHHHHHHH
Confidence 56777887773221 1 111235554 78899999888876443
No 313
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.99 E-value=84 Score=20.91 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=22.5
Q ss_pred CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEE
Q 025401 54 RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFI 88 (253)
Q Consensus 54 te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV 88 (253)
-+.+|+.+|-+.-+|+++.|...+.-. +|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~--~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIR--KGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeee--CCceeE
Confidence 355688888888889999887654332 455665
No 314
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=23.55 E-value=1.2e+02 Score=29.64 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=39.2
Q ss_pred CCCCeEEEcCCCCCCCHHH-HHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc-----CHHHHHHHHHhh
Q 025401 39 DLPTSLLVRNLRHDCRPED-IRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV-----EPDDAAEAKRHM 103 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~-L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~-----~~~~a~~Al~~l 103 (253)
-+++.|...++++-+++.- +..-+...|.++.+.|+.+ ...+|+.|. ..+.++.||+.|
T Consensus 787 LPp~~i~ac~mDP~LDD~vmfA~kLr~lG~~v~l~vle~------lPHGFLnft~ls~E~~~~~~~CI~rl 851 (880)
T KOG4388|consen 787 LPPVHIVACAMDPMLDDSVMFARKLRNLGQPVTLRVLED------LPHGFLNFTALSRETRQAAELCIERL 851 (880)
T ss_pred CCCceEEEeccCcchhHHHHHHHHHHhcCCceeehhhhc------CCccceeHHhhCHHHHHHHHHHHHHH
Confidence 3456677777777665432 3445667899999988766 346777774 446677777765
No 315
>PRK07868 acyl-CoA synthetase; Validated
Probab=23.45 E-value=4.7e+02 Score=27.10 Aligned_cols=60 Identities=10% Similarity=0.027 Sum_probs=37.5
Q ss_pred CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc-----CHHHHHHHHHhhCCCeecCe
Q 025401 52 DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV-----EPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 52 ~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~-----~~~~a~~Al~~l~g~~i~g~ 111 (253)
.|.-.+|+.++.+...|.++.++-.+......-.|||+.. +.++...++..|...++-..
T Consensus 868 ~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~~l~~y~vP~~ 932 (994)
T PRK07868 868 PVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALASLPVGLGPDI 932 (994)
T ss_pred eEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHHhCCCCcCCeE
Confidence 3677899999999998988766543323333457888764 24445555555544444443
No 316
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=23.43 E-value=2.3e+02 Score=18.81 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=27.9
Q ss_pred CHHHHHHHhcccC-CeeEEEEcccCCCCC-CceEEEEEEc-CHHHHHHHHHhhCC
Q 025401 54 RPEDIRRPFEQFG-AIKDIYLPRDYYSGE-PRGFGFIQFV-EPDDAAEAKRHMDG 105 (253)
Q Consensus 54 te~~L~~~F~~~G-~v~~v~i~~~~~~g~-~~g~afV~f~-~~~~a~~Al~~l~g 105 (253)
.-.+|.++|..+| .+..|. .-+..+. ..-+-||+|+ ..+..++||+.|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~Ie--SRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIE--SRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEE--CCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3566777788776 344443 2222222 2234567777 45556777777754
No 317
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=23.35 E-value=3.2e+02 Score=26.53 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=26.0
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCC-ee-cCeEEEEEEcccCC
Q 025401 83 RGFGFIQFVEPDDAAEAKRHMDGQ-VL-LGRELTVVFAEENR 122 (253)
Q Consensus 83 ~g~afV~f~~~~~a~~Al~~l~g~-~i-~g~~l~V~~a~~~~ 122 (253)
.|-|. .|+++++|.+||. ++. .| .|..|.|.+.-++.
T Consensus 406 ~GpA~-VF~see~a~~ai~--~g~i~i~~GdVvVIRyeGPkG 444 (577)
T PRK13016 406 RGPAL-VFDSYPEMKAAID--DENLDVTPDHVMVLRNAGPQG 444 (577)
T ss_pred EeeEE-EECCHHHHHHHHh--CCCcCCCCCeEEEEeCCCCCC
Confidence 45554 4999999999996 443 33 57888888765543
No 318
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=23.24 E-value=2.6e+02 Score=25.42 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=32.4
Q ss_pred CCHHHHHHHhcccC-Cee----EEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 53 CRPEDIRRPFEQFG-AIK----DIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 53 ~te~~L~~~F~~~G-~v~----~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
+|..+++++|..-- .|. .+.|+ | .+..+.-+-||++.+.+++..||+.|
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~l~~l-D-q~~lP~~~~~~~~~~~~~v~~aI~~M 56 (363)
T PRK05772 3 LTVKEVKELFKPKLLPIIWKDNTLTLL-D-QSLLPFETVYVDLKTVEEVALAIRNM 56 (363)
T ss_pred chHHHHHHHhCCCCceEEecCCEEEEE-e-cCCCCCeEEEEEeCCHHHHHHHHHhC
Confidence 46778899997531 111 12222 2 23445668999999999999999875
No 319
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=22.96 E-value=3.1e+02 Score=20.83 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHh-----cccCCee----EEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 51 HDCRPEDIRRPF-----EQFGAIK----DIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 51 ~~~te~~L~~~F-----~~~G~v~----~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
..++..+|++++ .-||++. ...++.-... ...|..-+.=+..+.+.+||..+. .++|+.|.|..
T Consensus 27 ~~i~~~~l~~~I~~s~l~llG~~gta~~~~~lv~~~~~-t~~GIvrc~R~~~~~v~aAL~l~~--~~~g~rv~I~~ 99 (124)
T COG1369 27 EEITRGELVRLIRRSLLSLLGDVGTAKANPRLVKYYFS-TGTGIVRCRREYVDLVRAALMLAR--EVNGKRVIIVV 99 (124)
T ss_pred ccCChhHHHHHHHHHHHHHcCcccccccceeEEEEecc-CCceEEEEechhHHHHHHHHHHHH--HhCCceEEEEE
Confidence 456777665543 3455442 2333322111 223333444456677777777554 67777766654
No 320
>PHA01632 hypothetical protein
Probab=22.74 E-value=79 Score=20.40 Aligned_cols=21 Identities=14% Similarity=0.437 Sum_probs=16.3
Q ss_pred EEEcCCCCCCCHHHHHHHhcc
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQ 64 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~ 64 (253)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345688999999999877654
No 321
>PF14268 YoaP: YoaP-like
Probab=22.60 E-value=64 Score=19.75 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=25.1
Q ss_pred EEEEEEcCHHHHHHHHHhhCCC--eecCeEEEEEEcc
Q 025401 85 FGFIQFVEPDDAAEAKRHMDGQ--VLLGRELTVVFAE 119 (253)
Q Consensus 85 ~afV~f~~~~~a~~Al~~l~g~--~i~g~~l~V~~a~ 119 (253)
+-+|.+++.|+|+.|-.-++.. .++|+.|.+++-.
T Consensus 2 ~~~i~i~t~e~Aq~~P~pft~yalFYnGkfiT~eils 38 (44)
T PF14268_consen 2 FKLIKIDTLEKAQNAPCPFTTYALFYNGKFITNEILS 38 (44)
T ss_pred cEEEEeccHHHHhcCCCceeEEEEEECCEEEEeeccC
Confidence 3578888999998876655554 5668888877644
No 322
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=22.57 E-value=1.2e+02 Score=23.75 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=18.4
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCC
Q 025401 83 RGFGFIQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 83 ~g~afV~f~~~~~a~~Al~~l~g 105 (253)
-..+.|+|.-+.+|...|..|-.
T Consensus 45 ~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 45 WNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred CceEEEEEechHHHHHHHHHHhh
Confidence 35799999999988887777644
No 323
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=22.57 E-value=61 Score=24.35 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHHHhcc---cCCeeEEEEcccCCCCCCceEEEEEEcCHH
Q 025401 49 LRHDCRPEDIRRPFEQ---FGAIKDIYLPRDYYSGEPRGFGFIQFVEPD 94 (253)
Q Consensus 49 Lp~~~te~~L~~~F~~---~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 94 (253)
-|+.+|..+|+++|.+ |-.|..-.+..+.....+-..||+.|....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 3667899999999975 434433333333322233457888886543
No 324
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=22.47 E-value=2.2e+02 Score=22.92 Aligned_cols=75 Identities=8% Similarity=0.073 Sum_probs=37.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceE-EEEEEcCHHHHHHH---HHhhCCCeecCeEEEEEEc
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGF-GFIQFVEPDDAAEA---KRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A---l~~l~g~~i~g~~l~V~~a 118 (253)
.|.|.--|..|+-++|.++|-..-+...+.-.-+ .-| ..| .-|-|.+.++.+.| |+.|+...+.+..|.+++.
T Consensus 56 ~V~V~yDp~~isy~~Ll~~f~~~hDPt~~~~Qg~-D~G--~qYRS~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~Tei~ 132 (172)
T PRK14054 56 AVEITYDPAVISYRELLELFFQIHDPTTLNRQGN-DRG--TQYRSAIFYHDEEQKEIAEASIAELQASGLFDKPIVTEVE 132 (172)
T ss_pred EEEEEECCCcCCHHHHHHHHHHhCCCCccCCCCC-CCC--cCceeEEEeCCHHHHHHHHHHHHHHHHhcccCCCcEEEEe
Confidence 4777666777888888887755422221111000 011 223 34455566555544 4444433223555666654
Q ss_pred cc
Q 025401 119 EE 120 (253)
Q Consensus 119 ~~ 120 (253)
..
T Consensus 133 ~~ 134 (172)
T PRK14054 133 PA 134 (172)
T ss_pred cC
Confidence 43
No 325
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=22.46 E-value=2.3e+02 Score=23.14 Aligned_cols=75 Identities=7% Similarity=0.059 Sum_probs=36.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEE-EEEEcCHHHHHH---HHHhhCCCeecCeEEEEEEc
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFG-FIQFVEPDDAAE---AKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~a-fV~f~~~~~a~~---Al~~l~g~~i~g~~l~V~~a 118 (253)
.|.|.--|..++-++|.++|-..-+-..+.-.-+ ..| ..|- -|-|.+.++.+. +++.|+.....+..|.+++.
T Consensus 61 ~V~V~yDp~~iSy~~LL~~Ff~~hDPt~~~~Qg~-D~G--~QYRS~If~~~~eQ~~~a~~~~~~~~~~~~~~~~i~Tei~ 137 (186)
T PRK13014 61 AVQITYDPKQVSYENLLQIFFSTHDPTQLNRQGP-DRG--EQYRSAIFYHDEEQKKVAEAYIAQLDEAGIFKKPIVTPIK 137 (186)
T ss_pred EEEEEECCCcCCHHHHHHHHHHhcCCCccCCCCC-CCC--CCceEEEEeCCHHHHHHHHHHHHHHHhccccCCCcEEEEe
Confidence 3667666777898888888755322221111000 011 1233 344445555444 44445433223556666654
Q ss_pred cc
Q 025401 119 EE 120 (253)
Q Consensus 119 ~~ 120 (253)
..
T Consensus 138 p~ 139 (186)
T PRK13014 138 PY 139 (186)
T ss_pred cC
Confidence 43
No 326
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=22.31 E-value=3e+02 Score=19.93 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=34.1
Q ss_pred CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC
Q 025401 52 DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 52 ~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 105 (253)
+-++++|.-+...-|.|.+|.+...- -| .=.+.+...+..|++..|+.|+.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~-YG--~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPV-YG--EITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETT-TE--EEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCC-Cc--EEEEEEecCCHHHHHHHHHHHhc
Confidence 34567788777766778888775442 22 23467788899999998887654
No 327
>smart00457 MACPF membrane-attack complex / perforin.
Probab=22.18 E-value=1.1e+02 Score=24.85 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=21.6
Q ss_pred EcCCCCCCCHHHHHHHhcccCC--eeEEEE
Q 025401 46 VRNLRHDCRPEDIRRPFEQFGA--IKDIYL 73 (253)
Q Consensus 46 V~nLp~~~te~~L~~~F~~~G~--v~~v~i 73 (253)
|.+||...+..+...||..||+ |..+.+
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~ 59 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGTHYITSATL 59 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCCeEEEeeee
Confidence 4578888888899999999996 444443
No 328
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=22.16 E-value=63 Score=21.39 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=10.9
Q ss_pred CHHHHHHHhcccCCeeEE
Q 025401 54 RPEDIRRPFEQFGAIKDI 71 (253)
Q Consensus 54 te~~L~~~F~~~G~v~~v 71 (253)
|--||++++.+||.++.+
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 446899999999976543
No 329
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=22.14 E-value=86 Score=27.70 Aligned_cols=60 Identities=17% Similarity=0.321 Sum_probs=28.4
Q ss_pred CCCCeEEEcCCCCCC-C---HHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEc-CHHHHHHHHHhh
Q 025401 39 DLPTSLLVRNLRHDC-R---PEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFV-EPDDAAEAKRHM 103 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~-t---e~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~Al~~l 103 (253)
.+.+.||||+|.... | -.+|.+.+...+ .|..+.|-... .||++-..+ +.++...||+.|
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy-----~G~G~~SL~~D~~eI~~~v~yl 97 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSY-----SGWGTSSLDRDVEEIAQLVEYL 97 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGB-----TTS-S--HHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCcc-----CCcCcchhhhHHHHHHHHHHHH
Confidence 556789999997642 2 466777775433 34444443321 455555443 456666666644
No 330
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=22.02 E-value=2.8e+02 Score=23.67 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=25.2
Q ss_pred CCeEEEcCCCCCC--CHHHHHHHhcccCCe-e---EEEEccc
Q 025401 41 PTSLLVRNLRHDC--RPEDIRRPFEQFGAI-K---DIYLPRD 76 (253)
Q Consensus 41 ~~~i~V~nLp~~~--te~~L~~~F~~~G~v-~---~v~i~~~ 76 (253)
+.-|+|--|..+. |..+|+.+|.+.|-- . .|.++.+
T Consensus 94 GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~ 135 (241)
T COG0217 94 GVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFD 135 (241)
T ss_pred ceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEe
Confidence 3468888887664 578999999988632 2 4555555
No 331
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=21.89 E-value=3.4e+02 Score=22.88 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=32.7
Q ss_pred CCCCeEEEcCCCCCCC---H----HHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCe
Q 025401 39 DLPTSLLVRNLRHDCR---P----EDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~t---e----~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 111 (253)
++..+|||..+..... . +.|++++..-..|.-|-|..+ .+..+.+.+....+|+.|... |.
T Consensus 116 ~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H---------~~~~~~~~~~~~~~l~~~~~~---g~ 183 (254)
T smart00633 116 DPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSH---------LSLGSPNIAEIRAALDRFASL---GL 183 (254)
T ss_pred CCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeee---------ecCCCCCHHHHHHHHHHHHHc---CC
Confidence 4578899975432222 1 223333333333544444211 112334667777777776533 66
Q ss_pred EEEEE
Q 025401 112 ELTVV 116 (253)
Q Consensus 112 ~l~V~ 116 (253)
.|.|.
T Consensus 184 pi~iT 188 (254)
T smart00633 184 EIQIT 188 (254)
T ss_pred ceEEE
Confidence 66554
No 332
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=21.87 E-value=1.3e+02 Score=17.92 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=23.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLP 74 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~ 74 (253)
.+.|..-+|.-..+.++|.+++..+.+ ..|.++
T Consensus 6 ~a~v~~~~fSgHad~~~L~~~i~~~~p-~~vilV 38 (43)
T PF07521_consen 6 RARVEQIDFSGHADREELLEFIEQLNP-RKVILV 38 (43)
T ss_dssp -SEEEESGCSSS-BHHHHHHHHHHHCS-SEEEEE
T ss_pred EEEEEEEeecCCCCHHHHHHHHHhcCC-CEEEEe
Confidence 456666668888999999999998855 555444
No 333
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=21.84 E-value=2.2e+02 Score=26.66 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=33.5
Q ss_pred EEcCCCCCC--CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 45 LVRNLRHDC--RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 45 ~V~nLp~~~--te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
+||||..-. ....+.++..+||.|..+.+.. .-+|...+++.++.++..
T Consensus 41 l~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~dpe~~~~vl~~ 91 (504)
T PLN00110 41 LLGALPLLGNMPHVALAKMAKRYGPVMFLKMGT---------NSMVVASTPEAARAFLKT 91 (504)
T ss_pred eeechhhcCCchHHHHHHHHHHhCCeEEEEcCC---------ccEEEECCHHHHHHHHHh
Confidence 457765332 2456778888999987666532 247778899999888764
No 334
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=21.61 E-value=2.1e+02 Score=20.22 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=32.5
Q ss_pred EEEcCCCCCCCHHHHHHHh-cccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 44 LLVRNLRHDCRPEDIRRPF-EQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
|.+-.||..++-++|.+-+ .+|+--..+.|..... | -+|+..+.++.+.||...
T Consensus 13 v~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE-G-----D~iti~sq~DLd~Ai~~a 67 (86)
T cd06408 13 TRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD-G-----DMITMGDQDDLDMAIDTA 67 (86)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC-C-----CCccccCHHHHHHHHHHH
Confidence 4445688888877765433 3444323444433221 2 578888998888888753
No 335
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=21.59 E-value=2e+02 Score=25.16 Aligned_cols=61 Identities=7% Similarity=-0.118 Sum_probs=32.7
Q ss_pred CCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 48 NLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 48 nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
.+|..++.++|++.|...+.-..+.+........ ...||+.-..-..+++.+..+....+.
T Consensus 56 ~~p~~~~~~~L~~~L~~l~~~l~l~i~i~~~~~~-~ri~vl~Sg~g~nl~al~~~~~~~~~~ 116 (286)
T PRK13011 56 HSEEGLDEDALRAGFAPIAARFGMQWELHDPAAR-PKVLIMVSKFDHCLNDLLYRWRIGELP 116 (286)
T ss_pred ecCCCCCHHHHHHHHHHHHHHhCcEEEEeecccC-ceEEEEEcCCcccHHHHHHHHHcCCCC
Confidence 5788888999998888776533333322211222 235555555544555555444444443
No 336
>PF11150 DUF2927: Protein of unknown function (DUF2927); InterPro: IPR021323 This family is conserved in Proteobacteria. Several members are described as being putative lipoproteins, but otherwise the function is not known.
Probab=21.53 E-value=3e+02 Score=22.94 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=40.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHH---hcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHH
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRP---FEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~---F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 101 (253)
.-.+.+-+|+|.+.+......+|..+ +...+.|..+.|.... .. ...-.|.|.+..+++..|.
T Consensus 28 ~Rw~~PVrv~v~~~~~~~~~~d~~~v~~~~~rL~~itg~~I~~~~--~~-~aN~~v~~~~~~~~~~~ir 93 (213)
T PF11150_consen 28 RRWEGPVRVRVEGVPPADRARDLARVRAYLARLRRITGHPISQVS--SP-NANFHVIFVSEDDWRPRIR 93 (213)
T ss_pred ccCCCCeEEEEeccChhhHHHHHHHHHHHHhhhccccCCceeecc--CC-CCcEEEEEeccchhhHHHH
Confidence 44567789999988877666666555 7777888766664332 11 3445677777777444443
No 337
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.53 E-value=2.7e+02 Score=18.78 Aligned_cols=50 Identities=10% Similarity=0.089 Sum_probs=27.2
Q ss_pred HHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEc-CHHHHHHHHHhhCC
Q 025401 55 PEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFV-EPDDAAEAKRHMDG 105 (253)
Q Consensus 55 e~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~Al~~l~g 105 (253)
-.++..+|..+| .+..|.--... .....-.-||+++ +.+..+.||+.|..
T Consensus 14 L~~iL~~f~~~~inl~~IeSRP~~-~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 14 LAKALKLFQELGINVVHIESRKSK-RRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCC-CCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 456777888886 34444322111 1112235567776 34566777777654
No 338
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=21.45 E-value=2e+02 Score=17.28 Aligned_cols=49 Identities=12% Similarity=0.035 Sum_probs=26.4
Q ss_pred CHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEE--EEEcCHHHHHHHHHhhCC
Q 025401 54 RPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGF--IQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 54 te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~af--V~f~~~~~a~~Al~~l~g 105 (253)
...+|.++|.+++ .|..+.+.... ....... +...+..+...+++.|..
T Consensus 11 ~l~~i~~~l~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 62 (71)
T cd04876 11 LLADITTVIAEEKINILSVNTRTDD---DGLATIRLTLEVRDLEHLARIMRKLRQ 62 (71)
T ss_pred HHHHHHHHHHhCCCCEEEEEeEECC---CCEEEEEEEEEECCHHHHHHHHHHHhC
Confidence 4457888888876 45555553321 1111122 333566677766666654
No 339
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=21.37 E-value=2.3e+02 Score=18.04 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=25.7
Q ss_pred CCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcC--HHHHHHHHHhhCC
Q 025401 53 CRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVE--PDDAAEAKRHMDG 105 (253)
Q Consensus 53 ~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~--~~~a~~Al~~l~g 105 (253)
-.-.+|-++|.++| .|..+.+.... .....+..+.+.+ ..++..+|+.+.+
T Consensus 11 G~l~~i~~~l~~~~inI~~~~~~~~~--~~~~~~~~i~v~~~~~~~~~~~l~~~~~ 64 (73)
T cd04902 11 GVIGKVGTILGEAGINIAGMQVGRDE--PGGEALMVLSVDEPVPDEVLEELRALPG 64 (73)
T ss_pred CHHHHHHHHHHHcCcChhheEeeccC--CCCEEEEEEEeCCCCCHHHHHHHHcCCC
Confidence 34566778888876 46555543321 1123344444443 2244455555554
No 340
>PRK12757 cell division protein FtsN; Provisional
Probab=21.36 E-value=2.5e+02 Score=24.17 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=44.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEE-EcCHHHHHHHHHhhCCCeecCeEE
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQ-FVEPDDAAEAKRHMDGQVLLGREL 113 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~-f~~~~~a~~Al~~l~g~~i~g~~l 113 (253)
.+.|.||-|......+.|..-+...|--.. |... + ..--.+|- |.+.++|+.++..|...-|.+..|
T Consensus 184 ~~~VQVGAF~~~~nAe~L~arL~~~G~~a~--I~~~---g-g~yRVrVGPf~sr~~A~~~~~rLk~~G~~~~ii 251 (256)
T PRK12757 184 RWMVQCGSFKGTEQAESVRAQLAFAGIESR--ITTG---G-GWNRVVLGPYNSKAAADKMLQRLKGAGHSGCIP 251 (256)
T ss_pred cEEEEEeeCCCHHHHHHHHHHHHhcCCceE--Eeec---C-CEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEE
Confidence 457888988877777788877776663322 2211 1 11123343 889999999999998776766554
No 341
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=21.26 E-value=67 Score=28.90 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=33.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCC-CceEEEEEEcC
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGE-PRGFGFIQFVE 92 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~-~~g~afV~f~~ 92 (253)
+.-||.|+-.+..+...|+++|.++..-..-.++.|-.||. +.|++.+.+..
T Consensus 179 P~GlfYGG~~p~wS~~~L~~il~~~~~~~~~v~~iDlHTGlGp~G~~~~i~~~ 231 (341)
T PF10994_consen 179 PDGLFYGGTEPEWSNRTLREILREHLAGAERVAWIDLHTGLGPYGHGELICDG 231 (341)
T ss_pred CCccccCCCCccHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCCCCceEEEecC
Confidence 34489999988888888888888776332222223334554 45666665554
No 342
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=21.24 E-value=2.8e+02 Score=23.26 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=20.6
Q ss_pred CCCCeEEEcCCCCC---------CCHHHHHHHhcccCCee
Q 025401 39 DLPTSLLVRNLRHD---------CRPEDIRRPFEQFGAIK 69 (253)
Q Consensus 39 ~~~~~i~V~nLp~~---------~te~~L~~~F~~~G~v~ 69 (253)
+.+..|+|+|..+. .+.+.|.++|.++|-.+
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V 46 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEV 46 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEE
Confidence 34566888887542 24567888898888533
No 343
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=21.13 E-value=2.2e+02 Score=24.94 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=15.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhcc
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQ 64 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~ 64 (253)
.|.|.-=|..|+-++|.++|-.
T Consensus 180 aV~V~yDp~~isy~~LL~~F~~ 201 (283)
T PRK05550 180 AVRVEFDPAKISYETLLKVFFE 201 (283)
T ss_pred EEEEEECCccCCHHHHHHHHHh
Confidence 4666655667888888887754
No 344
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=20.97 E-value=3.7e+02 Score=24.56 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=32.3
Q ss_pred CHHHHHHHhcccCC---eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee
Q 025401 54 RPEDIRRPFEQFGA---IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL 108 (253)
Q Consensus 54 te~~L~~~F~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 108 (253)
+.+++.+.+.++|. |..+.+... .-++.-|..+. .+.+++..|++.|-+..|
T Consensus 27 ~~~ea~~~a~~lg~p~~VvK~qv~~g-~Rgk~GGV~l~--~~~~e~~~a~~~ll~~~~ 81 (392)
T PRK14046 27 SPEQAVYRARELGGWHWVVKAQIHSG-ARGKAGGIKLC--RTYNEVRDAAEDLLGKKL 81 (392)
T ss_pred CHHHHHHHHHHcCCCcEEEEeeeccC-CCCcCCeEEEE--CCHHHHHHHHHHHhcchh
Confidence 56777777777664 445444321 23334445554 489999999888877654
No 345
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=20.84 E-value=3.3e+02 Score=19.64 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=36.3
Q ss_pred eEEEcCCCCCCC---HHHHHHHhcccCC-eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCe
Q 025401 43 SLLVRNLRHDCR---PEDIRRPFEQFGA-IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQV 107 (253)
Q Consensus 43 ~i~V~nLp~~~t---e~~L~~~F~~~G~-v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 107 (253)
.|.|......++ ..+|.+++.+-|- ++.+... .+-..|.|.+.++-..|.+.|....
T Consensus 33 AvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~~~--------~~~llirf~~~~~Ql~Ak~~L~~~L 93 (101)
T PF13721_consen 33 AVQISASSAGVQLPDAFQVEQALKAAGIAVKSIEQE--------GDSLLIRFDSTDQQLKAKDVLSKAL 93 (101)
T ss_pred cEEEecCCCCccCChHHHHHHHHHHCCCCcceEEee--------CCEEEEEECCHHHHHHHHHHHHHHc
Confidence 466665433222 3578888887763 3444432 2457899999998888887765443
No 346
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=20.78 E-value=40 Score=28.97 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=48.8
Q ss_pred CeEEEcCCCCCCCHHH-H--HHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 42 TSLLVRNLRHDCRPED-I--RRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~-L--~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
..++++++-..|..+- | ...|..|-.+....++.+. .+...+++|+.|.......++...-+++.|.-..|.+
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 3456666666665544 3 6677777766666666653 4556789999998877777777666666666665444
No 347
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=20.39 E-value=2e+02 Score=19.56 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=17.1
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCCee
Q 025401 83 RGFGFIQFVEPDDAAEAKRHMDGQVL 108 (253)
Q Consensus 83 ~g~afV~f~~~~~a~~Al~~l~g~~i 108 (253)
.+..+|.|+..++.+.|.. |.|..|
T Consensus 54 ~~~~i~~~~gi~~r~~Ae~-l~g~~l 78 (84)
T PF01782_consen 54 GKSLIVKFEGIDDREAAEA-LRGCEL 78 (84)
T ss_dssp TTEEEEEETT--SHHHHHT-TTT-EE
T ss_pred CCEEEEEEcCCCCHHHHHh-hCCCEE
Confidence 4578999999999888877 666543
No 348
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=20.30 E-value=2.5e+02 Score=26.30 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=32.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcc---cCCeeEEEEcccCCCCCCceEEEE-EEcCHHHHHHH
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQ---FGAIKDIYLPRDYYSGEPRGFGFI-QFVEPDDAAEA 99 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~---~G~v~~v~i~~~~~~g~~~g~afV-~f~~~~~a~~A 99 (253)
++|.|+-||+.++.+.|.+.+.. -+.|..+.-+.+.. ....++.|| ++.....++..
T Consensus 233 ~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des-~~~~~vrivI~lk~~~~~~~~ 293 (445)
T smart00434 233 NTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDES-HDRTGVRIVIELKRGAMAEVV 293 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhcc-CCCCceEEEEEECCCcCHHHH
Confidence 68999999999998888776543 33444443333321 112345554 45443334433
No 349
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=20.18 E-value=2.8e+02 Score=24.45 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=28.3
Q ss_pred CeeEEEEcccCCC--CCCceEEEEEEcCHHHHHHHHHhhCC
Q 025401 67 AIKDIYLPRDYYS--GEPRGFGFIQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 67 ~v~~v~i~~~~~~--g~~~g~afV~f~~~~~a~~Al~~l~g 105 (253)
.|+.|.|+..... .-++.||+++|-+...|...++.|..
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 3567777654322 23678999999999999988887653
No 350
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.18 E-value=2.3e+02 Score=17.54 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=26.6
Q ss_pred HHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCe
Q 025401 56 EDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQV 107 (253)
Q Consensus 56 ~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 107 (253)
.+|-++|.++| .|..+...... .......++..++.+.+..+|+. +|..
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~--~~~~~~v~~~ve~~~~~~~~L~~-~G~~ 63 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEK--KGGKALLIFRTEDIEKAIEVLQE-RGVE 63 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccC--CCCeEEEEEEeCCHHHHHHHHHH-CCce
Confidence 45667777665 56555543221 12234455666676766666664 4443
No 351
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.03 E-value=5.5e+02 Score=23.08 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=40.9
Q ss_pred eEEEcCCCCCCCHHHHHH-----------HhcccCC-eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC
Q 025401 43 SLLVRNLRHDCRPEDIRR-----------PFEQFGA-IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG 110 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~-----------~F~~~G~-v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 110 (253)
.|.| +|++--|..+|+- +.+.||- ...|.|+.+..+ -.+...+......||..|-..--.|
T Consensus 66 AvLi-GINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~------s~~~~PT~~Nir~Al~wLV~~aq~g 138 (362)
T KOG1546|consen 66 AVLI-GINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDE------SPVRIPTGKNIRRALRWLVESAQPG 138 (362)
T ss_pred EEEE-eecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCC------cccccCcHHHHHHHHHHHHhcCCCC
Confidence 4555 5787777777653 3356774 456666665322 1233445566667776654443346
Q ss_pred eEEEEEEccc
Q 025401 111 RELTVVFAEE 120 (253)
Q Consensus 111 ~~l~V~~a~~ 120 (253)
-.|.+.|+--
T Consensus 139 D~LvfHYSGH 148 (362)
T KOG1546|consen 139 DSLVFHYSGH 148 (362)
T ss_pred CEEEEEecCC
Confidence 6677777553
Done!