Query 025401
Match_columns 253
No_of_seqs 367 out of 2553
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 09:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 3.7E-24 1.2E-28 195.5 20.6 86 39-124 100-185 (437)
2 4fxv_A ELAV-like protein 1; RN 99.9 2.3E-23 7.7E-28 152.6 11.6 82 39-120 17-98 (99)
3 2cpz_A CUG triplet repeat RNA- 99.9 1E-22 3.5E-27 152.7 13.7 88 36-123 20-107 (115)
4 3s8s_A Histone-lysine N-methyl 99.9 2.6E-22 9E-27 149.7 12.1 83 39-121 4-86 (110)
5 1x4c_A Splicing factor, argini 99.9 9.8E-22 3.4E-26 145.9 14.6 78 37-121 11-93 (108)
6 2e5h_A Zinc finger CCHC-type a 99.9 6.1E-22 2.1E-26 143.0 12.7 84 36-119 11-94 (94)
7 2cq0_A Eukaryotic translation 99.9 4.8E-22 1.6E-26 146.1 12.4 89 36-124 10-98 (103)
8 2cqb_A Peptidyl-prolyl CIS-tra 99.9 4.3E-22 1.5E-26 146.0 11.9 90 36-125 7-96 (102)
9 1x5s_A Cold-inducible RNA-bind 99.9 4.3E-22 1.5E-26 146.1 11.3 88 36-123 7-94 (102)
10 2lxi_A RNA-binding protein 10; 99.9 1.2E-22 4E-27 146.5 7.9 87 41-127 1-89 (91)
11 2dgs_A DAZ-associated protein 99.9 9.6E-22 3.3E-26 143.5 12.8 89 35-124 4-92 (99)
12 2dgo_A Cytotoxic granule-assoc 99.9 1.3E-21 4.4E-26 146.6 13.7 89 36-124 10-98 (115)
13 1x5u_A Splicing factor 3B subu 99.9 7.6E-22 2.6E-26 145.5 12.2 89 36-124 10-98 (105)
14 2dnm_A SRP46 splicing factor; 99.9 5.3E-22 1.8E-26 145.9 11.2 89 36-124 8-96 (103)
15 1whw_A Hypothetical protein ri 99.9 1.2E-21 4.1E-26 142.9 12.9 88 37-124 4-91 (99)
16 2cqc_A Arginine/serine-rich sp 99.9 1.1E-21 3.6E-26 141.9 11.7 85 36-120 10-94 (95)
17 3bs9_A Nucleolysin TIA-1 isofo 99.9 9.4E-22 3.2E-26 139.9 11.1 85 37-121 2-86 (87)
18 2cqd_A RNA-binding region cont 99.9 4.9E-21 1.7E-25 143.8 15.2 87 36-123 12-98 (116)
19 2dnz_A Probable RNA-binding pr 99.9 1.5E-21 5.1E-26 141.2 11.9 85 39-123 3-87 (95)
20 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1E-21 3.5E-26 139.1 10.8 83 37-119 3-85 (85)
21 2d9p_A Polyadenylate-binding p 99.9 1.8E-21 6E-26 143.1 11.9 87 36-124 10-96 (103)
22 2cq3_A RNA-binding protein 9; 99.9 5.9E-21 2E-25 140.3 14.7 88 36-125 10-97 (103)
23 2do4_A Squamous cell carcinoma 99.9 3.8E-21 1.3E-25 140.5 13.6 87 36-123 12-98 (100)
24 2do0_A HnRNP M, heterogeneous 99.9 4.2E-21 1.4E-25 143.5 13.9 87 36-123 10-96 (114)
25 3md1_A Nuclear and cytoplasmic 99.9 2.1E-21 7.3E-26 136.8 11.6 82 41-122 1-82 (83)
26 1x4a_A Splicing factor, argini 99.9 5.9E-21 2E-25 141.8 14.6 85 36-123 17-101 (109)
27 2kxn_B Transformer-2 protein h 99.9 7.9E-22 2.7E-26 151.2 10.0 87 36-122 41-127 (129)
28 2dng_A Eukaryotic translation 99.9 4.4E-21 1.5E-25 141.0 13.1 86 36-123 10-95 (103)
29 1x4h_A RNA-binding protein 28; 99.9 4.1E-21 1.4E-25 142.8 13.1 88 36-123 10-103 (111)
30 1x5t_A Splicing factor 3B subu 99.9 2.2E-21 7.6E-26 140.6 11.1 86 39-124 3-89 (96)
31 2cph_A RNA binding motif prote 99.9 4.3E-21 1.5E-25 141.8 12.8 89 36-124 10-100 (107)
32 1wi8_A EIF-4B, eukaryotic tran 99.9 4.7E-21 1.6E-25 141.1 12.9 86 37-124 11-97 (104)
33 2cqi_A Nucleolysin TIAR; RNA r 99.9 8.8E-21 3E-25 139.3 14.0 87 36-124 10-96 (103)
34 2div_A TRNA selenocysteine ass 99.9 2E-21 6.7E-26 141.7 10.3 87 36-122 4-95 (99)
35 3ex7_B RNA-binding protein 8A; 99.9 1.8E-21 6.1E-26 148.2 10.3 88 37-124 18-105 (126)
36 2fy1_A RNA-binding motif prote 99.9 4.5E-21 1.5E-25 144.3 12.2 86 37-123 3-88 (116)
37 1u6f_A Tcubp1, RNA-binding pro 99.9 4.4E-21 1.5E-25 148.4 12.4 90 36-125 37-126 (139)
38 2lkz_A RNA-binding protein 5; 99.9 1.4E-21 4.7E-26 142.0 8.9 84 37-120 5-94 (95)
39 3ulh_A THO complex subunit 4; 99.9 3.8E-21 1.3E-25 142.2 11.5 83 36-119 24-106 (107)
40 2x1f_A MRNA 3'-END-processing 99.9 4.7E-21 1.6E-25 139.1 11.7 84 40-123 1-84 (96)
41 2dnh_A Bruno-like 5, RNA bindi 99.9 7.3E-21 2.5E-25 140.2 12.9 87 37-124 11-100 (105)
42 2dgp_A Bruno-like 4, RNA bindi 99.9 3.5E-21 1.2E-25 142.1 11.0 88 36-123 8-98 (106)
43 1h2v_Z 20 kDa nuclear CAP bind 99.9 6.5E-21 2.2E-25 150.5 12.9 87 37-123 35-121 (156)
44 2cpf_A RNA binding motif prote 99.9 3.4E-21 1.2E-25 140.2 10.3 85 39-123 3-90 (98)
45 2cqp_A RNA-binding protein 12; 99.9 2.8E-21 9.4E-26 140.7 9.7 85 37-121 11-95 (98)
46 1p27_B RNA-binding protein 8A; 99.9 3.7E-21 1.3E-25 142.0 10.6 85 38-122 20-104 (106)
47 2dgx_A KIAA0430 protein; RRM d 99.9 7.2E-21 2.4E-25 138.3 11.9 85 36-123 4-92 (96)
48 1wel_A RNA-binding protein 12; 99.9 1.3E-21 4.5E-26 148.8 8.2 85 36-121 20-104 (124)
49 2cpe_A RNA-binding protein EWS 99.8 8.4E-21 2.9E-25 141.7 12.2 87 37-123 11-105 (113)
50 2ek1_A RNA-binding protein 12; 99.8 1.2E-21 4E-26 141.8 7.3 84 37-120 11-94 (95)
51 1oo0_B CG8781-PA, drosophila Y 99.8 6.7E-21 2.3E-25 141.6 11.4 86 38-123 23-108 (110)
52 2ywk_A Putative RNA-binding pr 99.8 4.6E-21 1.6E-25 138.6 10.1 84 36-120 11-94 (95)
53 3beg_B Splicing factor, argini 99.8 2.4E-21 8.2E-26 145.5 8.8 74 39-119 14-92 (115)
54 2dh8_A DAZ-associated protein 99.8 4.6E-21 1.6E-25 141.3 10.2 88 36-124 11-98 (105)
55 2la6_A RNA-binding protein FUS 99.8 5.3E-21 1.8E-25 139.6 10.3 84 36-119 8-99 (99)
56 4f25_A Polyadenylate-binding p 99.8 6.7E-21 2.3E-25 143.0 11.0 81 41-123 5-85 (115)
57 2cq4_A RNA binding motif prote 99.8 4.7E-21 1.6E-25 143.4 10.1 83 39-122 23-105 (114)
58 4a8x_A RNA-binding protein wit 99.8 5.1E-21 1.8E-25 136.3 9.8 83 40-122 3-86 (88)
59 2dgv_A HnRNP M, heterogeneous 99.8 7.8E-21 2.7E-25 136.6 10.7 86 36-123 3-88 (92)
60 2dhg_A TRNA selenocysteine ass 99.8 6.5E-21 2.2E-25 140.2 10.5 87 36-123 4-92 (104)
61 2khc_A Testis-specific RNP-typ 99.8 1.1E-20 3.8E-25 142.2 11.9 84 36-119 35-118 (118)
62 3ns6_A Eukaryotic translation 99.8 1.2E-21 4E-26 143.6 6.3 84 38-121 3-93 (100)
63 2lea_A Serine/arginine-rich sp 99.8 2.3E-21 7.7E-26 149.8 8.1 89 36-124 42-130 (135)
64 3p5t_L Cleavage and polyadenyl 99.8 9.1E-22 3.1E-26 141.3 5.4 83 42-124 2-86 (90)
65 2dgu_A Heterogeneous nuclear r 99.8 3.5E-20 1.2E-24 136.2 13.6 81 37-125 7-87 (103)
66 2cqg_A TDP-43, TAR DNA-binding 99.8 4.9E-20 1.7E-24 135.3 13.9 86 36-123 10-95 (103)
67 1sjq_A Polypyrimidine tract-bi 99.8 7.9E-21 2.7E-25 140.0 9.5 82 38-125 13-96 (105)
68 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.1E-20 7.2E-25 144.5 12.4 83 36-118 58-140 (140)
69 2jrs_A RNA-binding protein 39; 99.8 9.2E-21 3.2E-25 140.8 9.8 86 36-121 21-106 (108)
70 2dgw_A Probable RNA-binding pr 99.8 2.6E-20 9E-25 133.7 11.9 84 36-122 5-88 (91)
71 3ucg_A Polyadenylate-binding p 99.8 2E-20 6.9E-25 133.5 11.1 80 41-121 6-85 (89)
72 3s7r_A Heterogeneous nuclear r 99.8 2.3E-20 7.7E-25 132.8 11.3 82 36-118 6-87 (87)
73 2kt5_A RNA and export factor-b 99.8 2.7E-20 9.4E-25 141.3 12.3 90 36-126 30-119 (124)
74 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.6E-20 8.8E-25 148.5 11.8 86 38-123 69-154 (165)
75 1x5o_A RNA binding motif, sing 99.8 6.3E-20 2.2E-24 137.2 13.3 85 36-121 20-112 (114)
76 1wez_A HnRNP H', FTP-3, hetero 99.8 1.6E-20 5.3E-25 138.2 9.7 84 36-122 10-93 (102)
77 1wg5_A Heterogeneous nuclear r 99.8 3.6E-20 1.2E-24 136.5 11.7 85 36-122 10-95 (104)
78 2rs2_A Musashi-1, RNA-binding 99.8 3.2E-20 1.1E-24 138.0 11.3 88 36-124 20-107 (109)
79 3n9u_C Cleavage and polyadenyl 99.8 1.9E-20 6.5E-25 148.1 10.6 83 39-121 53-137 (156)
80 2dis_A Unnamed protein product 99.8 4.8E-20 1.6E-24 136.7 12.2 87 38-124 5-95 (109)
81 2f3j_A RNA and export factor b 99.8 2.7E-20 9.2E-25 150.2 11.6 87 37-124 84-170 (177)
82 2cpy_A RNA-binding protein 12; 99.8 2.2E-20 7.6E-25 139.9 10.0 85 36-122 10-95 (114)
83 2dgt_A RNA-binding protein 30; 99.8 7.5E-20 2.6E-24 131.6 12.3 81 36-124 5-85 (92)
84 2hgl_A HNRPF protein, heteroge 99.8 1.2E-20 4.2E-25 145.8 8.5 85 35-121 38-125 (136)
85 2ad9_A Polypyrimidine tract-bi 99.8 3.3E-20 1.1E-24 139.8 10.6 85 35-125 25-111 (119)
86 1why_A Hypothetical protein ri 99.8 7.4E-20 2.5E-24 132.9 12.1 80 37-122 13-94 (97)
87 1x4b_A Heterogeneous nuclear r 99.8 4.9E-20 1.7E-24 138.3 11.5 84 39-123 25-108 (116)
88 1x4d_A Matrin 3; structural ge 99.8 2.3E-20 8E-25 137.1 9.4 79 38-122 12-93 (102)
89 2cpi_A CCR4-NOT transcription 99.8 3.4E-20 1.2E-24 138.3 10.4 86 37-122 11-102 (111)
90 2dnq_A RNA-binding protein 4B; 99.8 4.4E-20 1.5E-24 132.3 10.6 81 36-124 3-83 (90)
91 2cq1_A PTB-like protein L; RRM 99.8 8.8E-20 3E-24 133.9 12.3 84 36-125 10-95 (101)
92 2m2b_A RNA-binding protein 10; 99.8 9.1E-21 3.1E-25 145.5 7.3 87 36-123 18-110 (131)
93 2e5j_A Methenyltetrahydrofolat 99.8 4.4E-20 1.5E-24 134.2 10.5 82 36-122 14-95 (97)
94 2fc9_A NCL protein; structure 99.8 9.8E-20 3.4E-24 133.2 12.3 84 36-123 10-93 (101)
95 2wbr_A GW182, gawky, LD47780P; 99.8 3.9E-20 1.3E-24 130.9 9.7 75 40-120 6-80 (89)
96 2db1_A Heterogeneous nuclear r 99.8 3.7E-20 1.3E-24 139.6 10.2 84 36-121 12-98 (118)
97 3r27_A HnRNP L, heterogeneous 99.8 5.7E-20 2E-24 134.1 10.7 81 36-122 16-98 (100)
98 1s79_A Lupus LA protein; RRM, 99.8 2E-20 6.8E-25 137.8 8.3 81 38-120 8-88 (103)
99 1p1t_A Cleavage stimulation fa 99.8 1.9E-20 6.6E-25 137.6 8.1 85 39-123 6-90 (104)
100 2dnp_A RNA-binding protein 14; 99.8 8.3E-20 2.8E-24 130.9 11.3 80 36-123 4-83 (90)
101 1x4e_A RNA binding motif, sing 99.8 5.3E-21 1.8E-25 135.6 4.7 82 38-119 2-83 (85)
102 2kn4_A Immunoglobulin G-bindin 99.8 6.5E-20 2.2E-24 144.8 11.4 88 37-124 66-153 (158)
103 2ytc_A PRE-mRNA-splicing facto 99.8 1E-19 3.5E-24 128.8 11.1 78 36-119 7-85 (85)
104 1wex_A Hypothetical protein (r 99.8 7.9E-20 2.7E-24 134.9 10.9 82 37-124 11-94 (104)
105 2fc8_A NCL protein; structure 99.8 1.1E-19 3.6E-24 133.2 11.5 85 36-123 10-94 (102)
106 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.9E-20 6.6E-25 137.0 7.1 84 36-121 14-98 (100)
107 2jwn_A Embryonic polyadenylate 99.8 7.6E-20 2.6E-24 138.7 10.4 82 40-122 35-116 (124)
108 1wf1_A RNA-binding protein RAL 99.8 2.4E-19 8.2E-24 133.3 12.9 79 36-122 22-101 (110)
109 2err_A Ataxin-2-binding protei 99.8 7.9E-20 2.7E-24 135.9 10.2 85 35-121 23-107 (109)
110 2jvr_A Nucleolar protein 3; RN 99.8 5.1E-20 1.7E-24 137.4 9.1 81 37-121 24-105 (111)
111 2mss_A Protein (musashi1); RNA 99.8 2.5E-20 8.7E-25 128.9 6.7 75 43-118 1-75 (75)
112 2cpj_A Non-POU domain-containi 99.8 1.1E-19 3.8E-24 132.5 10.5 81 37-123 11-91 (99)
113 2nlw_A Eukaryotic translation 99.8 9.6E-20 3.3E-24 134.5 9.3 84 37-122 11-101 (105)
114 1x4g_A Nucleolysin TIAR; struc 99.8 1.9E-19 6.6E-24 133.6 10.9 81 37-123 21-101 (109)
115 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3E-20 1E-24 129.0 6.1 76 42-118 1-76 (77)
116 3q2s_C Cleavage and polyadenyl 99.8 5.5E-20 1.9E-24 154.3 8.8 82 40-121 67-150 (229)
117 2cpx_A Hypothetical protein FL 99.8 1.8E-20 6.2E-25 140.3 5.1 89 36-124 20-108 (115)
118 2ki2_A SS-DNA binding protein 99.8 1.7E-20 5.9E-25 134.3 4.5 82 42-124 2-83 (90)
119 2jvo_A Nucleolar protein 3; nu 99.8 2E-19 6.9E-24 133.5 10.0 80 36-123 26-105 (108)
120 2cqh_A IGF-II mRNA-binding pro 99.8 1.3E-19 4.4E-24 130.6 8.6 80 37-123 4-85 (93)
121 2hgn_A Heterogeneous nuclear r 99.8 2.5E-20 8.7E-25 144.5 5.0 85 36-123 41-125 (139)
122 2a3j_A U1 small nuclear ribonu 99.8 2.6E-19 8.8E-24 136.8 10.3 83 37-122 25-111 (127)
123 2cpd_A Apobec-1 stimulating pr 99.8 1.4E-18 4.7E-23 126.6 13.6 80 36-123 10-91 (99)
124 2dnn_A RNA-binding protein 12; 99.8 2.5E-19 8.4E-24 133.3 9.7 80 39-121 14-93 (109)
125 2xnq_A Nuclear polyadenylated 99.8 7.3E-19 2.5E-23 127.9 11.6 78 36-121 17-95 (97)
126 2hvz_A Splicing factor, argini 99.8 1.7E-19 5.7E-24 132.0 8.2 76 42-122 1-76 (101)
127 1x4f_A Matrin 3; structural ge 99.8 3.9E-19 1.3E-23 132.5 10.4 80 38-123 22-104 (112)
128 1whx_A Hypothetical protein ri 99.8 1.6E-19 5.3E-24 134.8 8.0 78 40-123 9-86 (111)
129 2la4_A Nuclear and cytoplasmic 99.8 2E-19 6.7E-24 131.6 8.4 77 38-120 24-100 (101)
130 4f02_A Polyadenylate-binding p 99.8 5.4E-19 1.8E-23 146.3 11.8 86 36-121 10-95 (213)
131 1fj7_A Nucleolin RBD1, protein 99.8 3.5E-20 1.2E-24 135.6 4.1 84 38-123 14-97 (101)
132 1nu4_A U1A RNA binding domain; 99.8 2.1E-19 7.3E-24 130.3 8.2 84 37-123 4-91 (97)
133 2e5g_A U6 snRNA-specific termi 99.8 7.5E-19 2.6E-23 126.9 11.0 80 38-123 5-84 (94)
134 2kvi_A Nuclear polyadenylated 99.8 2.5E-19 8.5E-24 130.0 8.4 79 37-123 6-85 (96)
135 3lqv_A PRE-mRNA branch site pr 99.8 4.7E-19 1.6E-23 132.6 9.9 83 37-122 4-86 (115)
136 2e44_A Insulin-like growth fac 99.8 6E-19 2E-23 127.7 10.1 81 37-121 11-92 (96)
137 1x5p_A Negative elongation fac 99.8 2.3E-18 7.8E-23 125.0 13.0 80 36-123 10-89 (97)
138 2krb_A Eukaryotic translation 99.8 1.5E-19 5.3E-24 126.9 6.5 73 41-115 1-80 (81)
139 2lmi_A GRSF-1, G-rich sequence 99.8 9.8E-20 3.4E-24 134.9 5.7 84 36-121 6-92 (107)
140 1iqt_A AUF1, heterogeneous nuc 99.8 1.1E-19 3.7E-24 125.6 5.2 75 43-118 1-75 (75)
141 2hgm_A HNRPF protein, heteroge 99.8 2.8E-19 9.5E-24 136.2 7.9 83 36-121 37-121 (126)
142 1fjc_A Nucleolin RBD2, protein 99.8 3.1E-19 1.1E-23 129.3 7.8 83 36-123 11-93 (96)
143 3egn_A RNA-binding protein 40; 99.8 1.8E-19 6E-24 140.2 5.7 89 37-125 41-134 (143)
144 2lcw_A RNA-binding protein FUS 99.6 1.8E-20 6.1E-25 140.7 0.0 86 38-123 4-97 (116)
145 2cq2_A Hypothetical protein LO 99.8 1.1E-18 3.9E-23 130.2 9.1 80 38-123 22-108 (114)
146 2xs2_A Deleted in azoospermia- 99.8 5.7E-19 2E-23 129.3 6.7 83 38-123 6-88 (102)
147 2dha_A FLJ20171 protein; RRM d 99.8 1E-18 3.6E-23 132.6 8.2 82 38-121 20-105 (123)
148 3md3_A Nuclear and cytoplasmic 99.8 4E-18 1.4E-22 134.3 11.9 83 37-119 83-165 (166)
149 1wg1_A KIAA1579 protein, homol 99.8 2E-18 6.8E-23 123.2 8.9 76 40-122 4-79 (88)
150 2i2y_A Fusion protein consists 99.8 1.8E-18 6.3E-23 135.5 9.3 82 36-122 68-149 (150)
151 3zzy_A Polypyrimidine tract-bi 99.8 5.5E-18 1.9E-22 129.3 11.1 79 40-123 27-108 (130)
152 1fxl_A Paraneoplastic encephal 99.8 6.3E-18 2.2E-22 133.3 11.8 82 41-122 2-83 (167)
153 2dnl_A Cytoplasmic polyadenyla 99.8 2.5E-18 8.5E-23 128.7 8.9 83 38-123 5-90 (114)
154 1b7f_A Protein (SXL-lethal pro 99.8 5.4E-18 1.8E-22 134.0 10.9 84 40-123 2-85 (168)
155 2e5i_A Heterogeneous nuclear r 99.7 1.1E-17 3.9E-22 126.9 11.9 78 39-122 21-103 (124)
156 2j8a_A Histone-lysine N-methyl 99.7 3.5E-18 1.2E-22 128.9 8.6 80 41-120 2-95 (136)
157 3d2w_A TAR DNA-binding protein 99.7 8.8E-18 3E-22 120.3 10.3 79 36-123 6-86 (89)
158 2qfj_A FBP-interacting repress 99.7 7.9E-18 2.7E-22 138.5 11.4 85 39-123 123-207 (216)
159 2diu_A KIAA0430 protein; struc 99.7 5E-18 1.7E-22 121.3 8.7 75 39-123 6-86 (96)
160 1sjr_A Polypyrimidine tract-bi 99.7 6E-18 2.1E-22 133.8 10.1 80 39-122 44-125 (164)
161 2yh0_A Splicing factor U2AF 65 99.7 1.3E-17 4.4E-22 135.5 11.4 86 38-123 111-196 (198)
162 2g4b_A Splicing factor U2AF 65 99.7 1.1E-17 3.7E-22 132.9 10.5 81 39-119 92-172 (172)
163 2hzc_A Splicing factor U2AF 65 99.7 9.6E-18 3.3E-22 118.9 9.1 73 38-117 3-86 (87)
164 3tyt_A Heterogeneous nuclear r 99.7 1.9E-17 6.4E-22 136.6 11.5 78 40-122 3-81 (205)
165 1l3k_A Heterogeneous nuclear r 99.7 1.9E-17 6.4E-22 134.3 11.0 85 37-122 9-93 (196)
166 2bz2_A Negative elongation fac 99.7 1.4E-17 4.9E-22 126.0 9.2 80 36-123 34-113 (121)
167 4f02_A Polyadenylate-binding p 99.7 1.9E-17 6.6E-22 136.9 10.7 81 40-122 102-182 (213)
168 1l3k_A Heterogeneous nuclear r 99.7 2.9E-17 9.8E-22 133.2 11.3 85 39-124 102-186 (196)
169 2cjk_A Nuclear polyadenylated 99.7 1E-17 3.6E-22 132.4 7.8 81 40-121 86-166 (167)
170 2qfj_A FBP-interacting repress 99.7 2.5E-17 8.6E-22 135.5 9.9 83 39-121 26-108 (216)
171 1b7f_A Protein (SXL-lethal pro 99.7 4.8E-17 1.6E-21 128.6 10.9 81 38-118 86-168 (168)
172 1wf0_A TDP-43, TAR DNA-binding 99.7 1.6E-17 5.5E-22 118.3 7.3 78 39-123 3-80 (88)
173 2pe8_A Splicing factor 45; RRM 99.7 9E-17 3.1E-21 118.6 11.3 83 39-121 6-94 (105)
174 3md3_A Nuclear and cytoplasmic 99.7 6.5E-17 2.2E-21 127.3 11.1 81 42-123 1-81 (166)
175 1fxl_A Paraneoplastic encephal 99.7 8.4E-17 2.9E-21 126.8 10.3 80 39-118 86-167 (167)
176 3u1l_A PRE-mRNA-splicing facto 99.7 3.7E-17 1.3E-21 137.3 8.3 82 36-123 129-231 (240)
177 3nmr_A Cugbp ELAV-like family 99.7 1.3E-16 4.4E-21 126.7 9.9 80 39-119 93-175 (175)
178 3pgw_A U1-A; protein-RNA compl 99.7 2E-16 7E-21 135.7 11.8 83 37-122 5-91 (282)
179 3nmr_A Cugbp ELAV-like family 99.7 1.3E-16 4.4E-21 126.7 9.8 84 40-123 2-90 (175)
180 2voo_A Lupus LA protein; RNA-b 99.7 2.8E-16 9.5E-21 128.3 10.9 78 41-120 109-186 (193)
181 1fje_B Nucleolin RBD12, protei 99.7 1.6E-16 5.6E-21 126.6 9.3 79 38-121 96-174 (175)
182 2adc_A Polypyrimidine tract-bi 99.7 1.5E-16 5.1E-21 133.0 9.2 82 36-122 29-111 (229)
183 2cjk_A Nuclear polyadenylated 99.7 1.4E-16 4.9E-21 125.8 8.5 79 40-120 2-80 (167)
184 2dit_A HIV TAT specific factor 99.7 9E-16 3.1E-20 114.3 11.9 81 38-122 12-103 (112)
185 3pgw_A U1-A; protein-RNA compl 99.7 1.3E-15 4.3E-20 130.8 14.0 77 38-119 204-281 (282)
186 2ghp_A U4/U6 snRNA-associated 99.7 4.1E-16 1.4E-20 134.5 10.9 84 37-121 206-291 (292)
187 3smz_A Protein raver-1, ribonu 99.6 1.3E-15 4.3E-20 130.9 12.2 85 39-123 93-177 (284)
188 3smz_A Protein raver-1, ribonu 99.6 1.2E-15 4.1E-20 131.0 11.2 85 38-123 181-266 (284)
189 1fje_B Nucleolin RBD12, protei 99.6 2E-16 6.9E-21 126.1 4.9 86 36-123 8-93 (175)
190 1qm9_A Polypyrimidine tract-bi 99.6 4.9E-16 1.7E-20 126.5 7.1 77 41-122 3-80 (198)
191 3tyt_A Heterogeneous nuclear r 99.6 8.6E-16 3E-20 126.5 8.5 78 39-118 121-204 (205)
192 3v4m_A Splicing factor U2AF 65 99.6 2.2E-15 7.5E-20 111.1 9.3 83 39-121 3-97 (105)
193 2adc_A Polypyrimidine tract-bi 99.6 1.8E-15 6E-20 126.4 9.7 78 39-121 149-228 (229)
194 1qm9_A Polypyrimidine tract-bi 99.6 1E-15 3.4E-20 124.6 8.0 78 39-121 118-197 (198)
195 3sde_A Paraspeckle component 1 99.6 1.9E-15 6.5E-20 128.7 10.0 78 37-120 18-95 (261)
196 2g4b_A Splicing factor U2AF 65 99.6 5E-15 1.7E-19 117.4 9.6 76 40-122 3-89 (172)
197 3ue2_A Poly(U)-binding-splicin 99.6 4.6E-15 1.6E-19 111.6 8.8 82 40-121 19-109 (118)
198 1jmt_A Splicing factor U2AF 35 99.6 8.9E-16 3E-20 113.0 4.7 72 46-118 20-103 (104)
199 2yh0_A Splicing factor U2AF 65 99.6 6.7E-15 2.3E-19 119.3 9.7 76 40-122 3-89 (198)
200 2ghp_A U4/U6 snRNA-associated 99.6 5.1E-15 1.7E-19 127.6 9.5 83 40-123 116-199 (292)
201 3sde_A Paraspeckle component 1 99.6 7.6E-15 2.6E-19 125.0 10.2 82 40-122 95-180 (261)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 5.2E-14 1.8E-18 102.7 11.2 77 41-124 10-93 (100)
203 3tht_A Alkylated DNA repair pr 99.5 1.7E-14 5.7E-19 127.2 9.6 78 36-119 13-97 (345)
204 3s6e_A RNA-binding protein 39; 99.5 1.4E-13 4.7E-18 102.8 10.4 80 38-121 4-93 (114)
205 1owx_A Lupus LA protein, SS-B, 99.4 7.6E-13 2.6E-17 99.3 9.9 80 34-119 11-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 3.3E-12 1.1E-16 90.3 8.9 75 39-122 5-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 2.6E-11 8.8E-16 86.2 4.9 72 39-119 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 3.7E-10 1.3E-14 93.5 8.3 69 53-121 141-213 (222)
209 2l9w_A U4/U6 snRNA-associated- 99.0 2.6E-09 9E-14 77.4 8.9 76 37-118 17-97 (117)
210 1wey_A Calcipressin 1; structu 98.6 9.6E-08 3.3E-12 68.9 7.6 79 38-122 2-85 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.3 7.9E-06 2.7E-10 58.6 10.9 75 38-121 5-84 (104)
212 1uw4_A UPF3X; nonsense mediate 98.3 6.8E-06 2.3E-10 58.1 10.0 80 42-121 2-88 (91)
213 1wwh_A Nucleoporin 35, nucleop 98.2 7.5E-06 2.5E-10 60.6 8.6 75 37-119 20-95 (119)
214 1whv_A Poly(A)-specific ribonu 98.0 2.7E-05 9.1E-10 55.3 7.5 54 41-103 16-69 (100)
215 2l08_A Regulator of nonsense t 97.9 2.9E-05 1E-09 55.3 6.8 81 40-120 8-95 (97)
216 3p3d_A Nucleoporin 53; structu 97.7 3.3E-05 1.1E-09 57.9 5.1 78 40-119 6-97 (132)
217 3ctr_A Poly(A)-specific ribonu 97.7 3.6E-05 1.2E-09 54.7 4.8 54 42-104 7-60 (101)
218 3pq1_A Poly(A) RNA polymerase; 96.7 0.00081 2.8E-08 61.1 3.6 55 42-102 54-108 (464)
219 2i2y_A Fusion protein consists 96.5 0.001 3.6E-08 50.8 2.3 41 79-120 9-50 (150)
220 2kn4_A Immunoglobulin G-bindin 96.3 0.0024 8.3E-08 49.0 3.5 34 71-106 3-36 (158)
221 3pgw_S U1-70K; protein-RNA com 95.2 0.12 4.2E-06 46.5 10.5 7 94-100 117-123 (437)
222 3d45_A Poly(A)-specific ribonu 94.5 0.11 3.8E-06 47.8 8.3 56 41-105 440-495 (507)
223 4eyt_A Telomerase associated p 94.0 0.6 2E-05 32.3 9.0 70 39-116 10-86 (129)
224 2g0c_A ATP-dependent RNA helic 93.5 0.15 5E-06 34.0 5.3 68 43-119 2-75 (76)
225 4e8u_A Putative uncharacterize 83.1 4.3 0.00015 31.5 7.2 58 41-101 12-81 (172)
226 3fry_A Probable copper-exporti 78.6 5.8 0.0002 25.2 5.8 55 41-102 6-60 (73)
227 3lpe_A Putative transcription 76.9 7 0.00024 26.9 6.0 35 67-106 39-73 (92)
228 3ts2_A Protein LIN-28 homolog 71.1 0.18 6.1E-06 38.5 -3.8 29 55-91 1-29 (148)
229 3dxs_X Copper-transporting ATP 69.4 15 0.00053 22.9 6.1 55 42-102 4-62 (74)
230 4f25_A Polyadenylate-binding p 65.7 1.3 4.3E-05 31.6 0.0 19 39-57 95-113 (115)
231 1yg0_A COP associated protein; 62.1 22 0.00075 21.0 6.0 55 43-103 4-61 (66)
232 1vd2_A Protein kinase C, IOTA 61.5 17 0.00059 24.9 5.2 53 44-103 17-74 (89)
233 4a4j_A Pacszia, cation-transpo 60.7 13 0.00044 22.9 4.3 55 42-102 4-61 (69)
234 2xmw_A PACS-N, cation-transpor 60.0 26 0.00087 21.1 6.1 56 42-103 5-63 (71)
235 2kt2_A Mercuric reductase; nme 59.2 26 0.00091 21.0 6.3 54 43-102 3-59 (69)
236 2cu1_A Mitogen-activated prote 58.3 8.6 0.0003 27.0 3.2 51 48-106 23-74 (103)
237 2l3m_A Copper-ION-binding prot 56.6 30 0.001 20.8 5.9 55 42-102 7-65 (71)
238 1cpz_A Protein (COPZ); copper 56.3 29 0.00099 20.6 7.6 55 42-102 2-60 (68)
239 1q8l_A Copper-transporting ATP 55.6 37 0.0013 21.6 7.5 56 42-103 11-70 (84)
240 4bby_A Alkyldihydroxyacetoneph 55.5 8.4 0.00029 36.4 3.7 55 48-103 350-408 (658)
241 2g9o_A Copper-transporting ATP 54.7 17 0.00059 24.0 4.3 56 42-103 5-64 (90)
242 2npt_B Mitogen-activated prote 53.3 28 0.00095 24.1 5.0 51 48-106 35-86 (100)
243 3cjk_B Copper-transporting ATP 53.0 37 0.0013 20.8 6.2 55 43-103 5-63 (75)
244 2ofg_X Zinc-transporting ATPas 52.9 53 0.0018 22.6 7.4 56 42-103 10-69 (111)
245 1osd_A MERP, hypothetical prot 52.6 36 0.0012 20.5 6.9 56 42-103 5-64 (72)
246 1yjr_A Copper-transporting ATP 49.7 41 0.0014 20.4 7.2 56 41-102 5-64 (75)
247 2crl_A Copper chaperone for su 49.6 57 0.0019 22.0 6.6 53 43-102 22-75 (98)
248 1kvi_A Copper-transporting ATP 49.6 44 0.0015 20.7 7.0 56 42-103 10-69 (79)
249 2w7a_A LINE-1 ORF1P; RNA-bindi 49.2 35 0.0012 23.9 5.2 75 42-116 4-98 (100)
250 3lo3_A Uncharacterized conserv 48.1 31 0.0011 23.5 4.8 20 82-101 52-71 (94)
251 1fvq_A Copper-transporting ATP 47.8 43 0.0015 20.1 5.3 55 43-103 5-62 (72)
252 1y3j_A Copper-transporting ATP 47.4 34 0.0012 21.2 4.8 56 42-103 5-64 (77)
253 1aw0_A Menkes copper-transport 47.3 29 0.00098 21.0 4.3 55 43-103 6-64 (72)
254 3h7h_B Transcription elongatio 47.0 44 0.0015 23.5 5.5 35 67-106 40-74 (106)
255 2jrh_A Mitogen-activated prote 46.1 34 0.0012 23.4 4.4 51 48-106 19-70 (94)
256 1mwy_A ZNTA; open-faced beta-s 46.0 48 0.0017 20.1 7.5 56 42-103 5-62 (73)
257 2c60_A Human mitogen-activated 46.0 29 0.00097 24.4 4.2 51 48-106 46-97 (111)
258 2lfv_A Protein DAMX; cell divi 51.7 4.3 0.00015 28.9 0.0 65 40-109 24-90 (106)
259 1p6t_A Potential copper-transp 45.6 60 0.0021 23.1 6.5 55 43-103 77-135 (151)
260 2exu_A Transcription initiatio 45.5 40 0.0014 26.7 5.6 28 82-109 148-175 (200)
261 3uzu_A Ribosomal RNA small sub 45.1 8.3 0.00028 32.2 1.7 33 42-74 115-147 (279)
262 3fut_A Dimethyladenosine trans 43.9 17 0.00059 30.1 3.4 31 41-72 110-140 (271)
263 3swz_A Steroid 17-alpha-hydrox 43.8 27 0.00094 30.7 5.0 58 44-111 17-78 (494)
264 1x60_A Sporulation-specific N- 43.7 17 0.00056 23.7 2.7 65 39-108 7-71 (79)
265 2j5a_A 30S ribosomal protein S 43.7 82 0.0028 22.1 6.8 47 43-92 12-73 (110)
266 2qif_A Copper chaperone COPZ; 43.0 48 0.0016 19.3 6.1 54 43-102 5-62 (69)
267 1ywx_A 30S ribosomal protein S 43.0 83 0.0028 22.0 6.4 47 51-98 28-79 (102)
268 1opz_A Potential copper-transp 43.0 53 0.0018 19.8 7.5 56 42-103 8-67 (76)
269 2cfx_A HTH-type transcriptiona 42.9 92 0.0032 22.5 8.5 47 55-105 78-124 (144)
270 1xn9_A 30S ribosomal protein S 42.3 85 0.0029 21.9 6.3 48 51-99 28-80 (101)
271 2v94_A RPS24, 30S ribosomal pr 39.1 54 0.0018 23.2 4.9 47 51-98 37-88 (107)
272 2lsl_A Telomerase associated p 44.7 6.6 0.00022 27.3 0.0 23 83-105 77-99 (137)
273 2xzm_P RPS24E; ribosome, trans 38.5 68 0.0023 24.1 5.6 47 51-98 31-82 (149)
274 3bde_A MLL5499 protein; stress 38.2 87 0.003 22.3 6.1 55 44-98 24-86 (120)
275 2e7g_A Putative ribosome-bindi 38.1 64 0.0022 23.4 5.4 35 65-103 43-78 (129)
276 3ced_A Methionine import ATP-b 37.8 38 0.0013 23.3 4.0 63 43-105 22-87 (98)
277 3iwl_A Copper transport protei 37.8 68 0.0023 19.5 5.3 53 42-102 4-57 (68)
278 2ew9_A Copper-transporting ATP 37.8 53 0.0018 23.3 5.0 56 42-103 82-141 (149)
279 1qyr_A KSGA, high level kasuga 37.7 22 0.00075 29.0 3.1 28 42-69 91-118 (252)
280 2d8m_A DNA-repair protein XRCC 37.5 26 0.0009 25.3 3.2 30 39-69 23-52 (129)
281 2yko_A LINE-1 ORF1P; RNA-bindi 37.2 87 0.003 25.4 6.4 77 41-117 52-148 (233)
282 2kyz_A Heavy metal binding pro 36.6 31 0.0011 20.8 3.1 53 43-102 4-56 (67)
283 2ldi_A Zinc-transporting ATPas 36.5 65 0.0022 18.9 5.8 54 43-102 6-63 (71)
284 3fjv_A Uncharacterized novel p 36.4 39 0.0013 26.6 4.2 46 54-106 66-111 (194)
285 1i4w_A Mitochondrial replicati 36.2 21 0.0007 31.0 2.8 23 42-64 143-165 (353)
286 3pm9_A Putative oxidoreductase 35.8 44 0.0015 30.1 5.0 54 49-103 194-251 (476)
287 3e6i_A CYPIIE1, P450-J, cytoch 35.5 33 0.0011 29.9 4.1 49 45-102 20-71 (476)
288 3u5c_Y RP50, 40S ribosomal pro 34.2 1.4E+02 0.0048 22.0 7.3 47 51-98 33-84 (135)
289 2okq_A Hypothetical protein YB 34.1 80 0.0027 23.4 5.3 45 58-102 50-109 (141)
290 2cg4_A Regulatory protein ASNC 33.7 1.3E+02 0.0046 21.7 6.9 52 49-104 76-128 (152)
291 3tbg_A Cytochrome P450 2D6; mo 33.7 23 0.0008 30.8 2.9 48 45-101 20-70 (479)
292 2rf4_B DNA-directed RNA polyme 33.7 26 0.00089 23.7 2.3 29 37-65 15-43 (87)
293 2ko1_A CTR148A, GTP pyrophosph 33.4 95 0.0032 19.8 6.6 60 44-105 8-68 (88)
294 3bb5_A Stress responsive alpha 33.1 1.3E+02 0.0044 21.3 7.7 55 44-98 24-89 (121)
295 3ftd_A Dimethyladenosine trans 33.0 21 0.00073 29.0 2.3 27 42-68 96-122 (249)
296 1wj6_A KIAA0049 protein, RSGI 33.0 82 0.0028 22.0 4.9 62 50-119 33-94 (101)
297 1jww_A Potential copper-transp 32.9 78 0.0027 19.3 4.7 54 43-102 6-63 (80)
298 2kkh_A Putative heavy metal tr 32.8 1E+02 0.0035 20.0 8.1 56 42-103 18-77 (95)
299 3p8b_B Transcription antitermi 32.7 51 0.0017 24.5 4.2 34 68-106 33-66 (152)
300 1wvf_A 4-cresol dehydrogenase 32.5 28 0.00097 31.6 3.2 43 57-100 217-261 (520)
301 4hhu_A OR280; engineered prote 32.4 81 0.0028 22.7 4.9 70 43-117 44-128 (170)
302 3tqs_A Ribosomal RNA small sub 32.3 12 0.00041 30.7 0.6 31 43-73 98-128 (255)
303 2rop_A Copper-transporting ATP 32.1 1.5E+02 0.005 22.5 7.1 56 42-103 124-183 (202)
304 2lea_A Serine/arginine-rich sp 31.7 9.9 0.00034 27.8 0.0 28 84-111 5-32 (135)
305 2uuu_A Alkyldihydroxyacetoneph 31.4 30 0.001 32.1 3.2 50 54-104 286-339 (584)
306 2ns6_A Mobilization protein A; 31.2 1E+02 0.0035 23.9 5.9 49 42-93 71-127 (185)
307 3bgu_A Ferredoxin-like protein 31.1 1.4E+02 0.0047 21.0 6.9 55 44-98 25-88 (116)
308 1q4r_A Protein AT3G17210; cent 30.3 1.4E+02 0.0046 20.7 7.3 55 44-98 14-79 (112)
309 2e1c_A Putative HTH-type trans 30.2 1.7E+02 0.0059 21.9 7.5 51 48-103 94-144 (171)
310 2qrr_A Methionine import ATP-b 29.8 1.1E+02 0.0037 20.8 5.3 62 43-104 25-88 (101)
311 1i1g_A Transcriptional regulat 29.7 1.2E+02 0.0041 21.5 5.9 48 54-105 76-124 (141)
312 2e5p_A Protein PHF1, PHD finge 29.6 23 0.0008 22.8 1.5 21 65-93 27-47 (68)
313 2kgl_A Mesoderm development ca 29.1 1.9E+02 0.0066 22.6 7.0 55 41-103 75-136 (195)
314 3fle_A SE_1780 protein; struct 29.1 2E+02 0.0067 23.0 7.6 35 40-74 6-44 (249)
315 3j21_T 50S ribosomal protein L 28.9 81 0.0028 21.3 4.3 56 44-102 25-82 (86)
316 1uta_A FTSN, MSGA, cell divisi 28.7 5.9 0.0002 26.3 -1.6 66 40-111 8-74 (81)
317 2cyy_A Putative HTH-type trans 28.4 1.7E+02 0.0057 21.1 7.5 53 48-105 74-126 (151)
318 2k2p_A Uncharacterized protein 28.1 51 0.0017 21.5 3.2 55 42-102 24-79 (85)
319 2kpo_A Rossmann 2X2 fold prote 27.7 38 0.0013 22.6 2.3 51 53-115 33-83 (110)
320 3i4p_A Transcriptional regulat 26.9 1.8E+02 0.0063 21.4 6.6 51 48-102 70-122 (162)
321 2g1d_A 30S ribosomal protein S 26.8 43 0.0015 23.3 2.6 47 51-98 29-80 (98)
322 3n9y_A Cholesterol SIDE-chain 25.7 99 0.0034 26.8 5.6 39 55-102 35-73 (487)
323 3pm0_A Cypib1, cytochrome P450 24.9 1E+02 0.0035 26.9 5.5 49 44-101 18-68 (507)
324 2f06_A Conserved hypothetical 24.9 1.9E+02 0.0065 20.6 6.9 25 83-108 111-135 (144)
325 2xmm_A SSR2857 protein, ATX1; 24.9 1E+02 0.0035 17.5 4.2 54 43-102 4-58 (64)
326 1cqm_A Ribosomal protein S6; a 24.9 85 0.0029 21.6 4.0 56 43-101 6-76 (101)
327 3bn7_A Ferredoxin-like protein 24.6 1.9E+02 0.0064 20.4 6.7 54 44-97 24-90 (120)
328 2qsw_A Methionine import ATP-b 24.5 90 0.0031 21.2 4.0 62 43-104 25-88 (100)
329 3lp5_A Putative cell surface h 24.4 2.4E+02 0.0081 22.5 7.3 53 40-92 4-69 (250)
330 2l69_A Rossmann 2X3 fold prote 23.7 1.6E+02 0.0054 20.2 5.0 35 83-119 51-85 (134)
331 2bkf_A Zinc-finger protein NBR 23.7 1.4E+02 0.0047 20.2 4.6 59 51-117 26-84 (87)
332 3dhx_A Methionine import ATP-b 23.4 43 0.0015 23.3 2.2 55 52-106 32-88 (106)
333 2pn6_A ST1022, 150AA long hypo 22.9 2.1E+02 0.0072 20.4 6.6 49 53-105 76-125 (150)
334 2w25_A Probable transcriptiona 22.6 2.2E+02 0.0074 20.4 6.8 44 56-103 82-125 (150)
335 2cs4_A Protein C12ORF2; GTP bi 22.4 48 0.0016 22.9 2.1 22 46-67 21-43 (95)
336 3fmb_A Dimeric protein of unkn 22.3 2.1E+02 0.0071 20.1 7.4 55 44-98 24-90 (118)
337 2m0o_A PHD finger protein 1; t 22.3 42 0.0014 22.2 1.7 21 65-93 44-64 (79)
338 2gu3_A YPMB protein; APC1927, 22.1 1.1E+02 0.0036 22.5 4.2 47 46-92 68-127 (136)
339 2zbc_A 83AA long hypothetical 21.9 1.6E+02 0.0054 18.6 7.2 44 54-101 14-57 (83)
340 3d53_A Inorganic pyrophosphata 21.7 1E+02 0.0034 23.8 4.1 38 55-103 132-169 (173)
341 3ld6_A Lanosterol 14-alpha dem 21.4 1.3E+02 0.0045 25.9 5.5 48 45-101 22-71 (461)
342 3mfb_A Uncharacterized protein 21.3 1.2E+02 0.004 23.0 4.3 36 53-88 3-41 (157)
343 2i9x_A Putative septation prot 21.3 1E+02 0.0036 20.8 3.7 26 67-92 5-30 (87)
344 2cvi_A 75AA long hypothetical 21.1 1.7E+02 0.0059 18.7 7.2 44 54-101 14-57 (83)
345 1mli_A Muconolactone isomerase 21.1 2.1E+02 0.0072 19.7 7.2 59 47-109 9-77 (96)
346 1x8d_A Hypothetical protein YI 21.0 1.3E+02 0.0045 20.9 4.3 34 56-92 27-60 (104)
347 2dbb_A Putative HTH-type trans 21.0 2.3E+02 0.008 20.2 6.6 46 55-104 82-129 (151)
348 2nn4_A Hypothetical protein YQ 21.0 31 0.0011 22.6 0.9 18 54-71 4-21 (72)
349 4a17_R RPL23A, 60S ribosomal p 20.8 83 0.0028 23.6 3.3 56 44-102 89-146 (150)
350 3k9v_A 1,25-dihydroxyvitamin D 20.6 1.4E+02 0.0049 25.6 5.5 39 55-102 51-89 (482)
351 2f9f_A First mannosyl transfer 20.6 2.5E+02 0.0086 20.4 6.6 67 37-103 20-98 (177)
352 2djw_A Probable transcriptiona 20.4 1.8E+02 0.006 19.0 4.9 43 54-100 14-56 (92)
353 1ytr_A Bacteriocin plantaricin 20.1 56 0.0019 16.2 1.5 12 55-66 14-25 (26)
354 3u5e_X 60S ribosomal protein L 20.1 88 0.003 23.3 3.3 56 44-102 81-138 (142)
355 3bsu_A Ribonuclease H1, RNAse 20.0 1.5E+02 0.0053 17.8 4.8 43 43-102 7-50 (53)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.92 E-value=3.7e-24 Score=195.49 Aligned_cols=86 Identities=33% Similarity=0.533 Sum_probs=80.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
.+.++|||+|||+.||+++|++||.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.|||++|+|+.|.|+||
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025401 119 EENRKK 124 (253)
Q Consensus 119 ~~~~~~ 124 (253)
......
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 876543
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=2.3e-23 Score=152.60 Aligned_cols=82 Identities=27% Similarity=0.502 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
..+++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cc
Q 025401 119 EE 120 (253)
Q Consensus 119 ~~ 120 (253)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=1e-22 Score=152.74 Aligned_cols=88 Identities=19% Similarity=0.316 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
...+..++|||+|||+++++++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
+|+++...
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99987654
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=2.6e-22 Score=149.71 Aligned_cols=83 Identities=10% Similarity=0.183 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
.+.++|||+||++++++++|+++|++||.|+.|.|+.+..++.++|||||+|++.++|++||+.|||..|+|+.|.|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 025401 119 EEN 121 (253)
Q Consensus 119 ~~~ 121 (253)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 744
No 5
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=9.8e-22 Score=145.91 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC-----e
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG-----R 111 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g-----~ 111 (253)
+....++|||+|||+++++++|+++|.+||+|+.|.|+.+ |||||+|.+.++|++||+.||+.+|+| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999865 899999999999999999999999999 9
Q ss_pred EEEEEEcccC
Q 025401 112 ELTVVFAEEN 121 (253)
Q Consensus 112 ~l~V~~a~~~ 121 (253)
.|.|++|++.
T Consensus 84 ~i~V~~a~~~ 93 (108)
T 1x4c_A 84 YIRVKVDGPR 93 (108)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEeCCCC
Confidence 9999998864
No 6
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=6.1e-22 Score=143.02 Aligned_cols=84 Identities=23% Similarity=0.423 Sum_probs=79.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEcc
Q 025401 116 VFAE 119 (253)
Q Consensus 116 ~~a~ 119 (253)
+||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 7
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.8e-22 Score=146.13 Aligned_cols=89 Identities=34% Similarity=0.517 Sum_probs=83.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+.+..++|||+|||..+++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 45567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 025401 116 VFAEENRKK 124 (253)
Q Consensus 116 ~~a~~~~~~ 124 (253)
.++++....
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999876543
No 8
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.3e-22 Score=146.02 Aligned_cols=90 Identities=32% Similarity=0.492 Sum_probs=83.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
....+.++|||+|||+.+++++|+++|.+||.|+.|.|+.+..++..+|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCCCCC
Q 025401 116 VFAEENRKKP 125 (253)
Q Consensus 116 ~~a~~~~~~~ 125 (253)
.++++.....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2cqb_A 87 NLAKPMRIKE 96 (102)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998776543
No 9
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.3e-22 Score=146.06 Aligned_cols=88 Identities=27% Similarity=0.473 Sum_probs=82.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||+++++++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45567789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
++++....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99987654
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=146.48 Aligned_cols=87 Identities=24% Similarity=0.475 Sum_probs=79.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh-CCCeecCeEEEEEEc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM-DGQVLLGRELTVVFA 118 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l-~g~~i~g~~l~V~~a 118 (253)
.++|||+|||+++|+++|+++|++|| .|..|.|+.++.++.++|||||+|.+.++|++||+.| ++..|+|+.|.|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999987 456899999999999
Q ss_pred ccCCCCCCc
Q 025401 119 EENRKKPSD 127 (253)
Q Consensus 119 ~~~~~~~~~ 127 (253)
.+......+
T Consensus 81 ~~~~~~~~D 89 (91)
T 2lxi_A 81 DPKPKINED 89 (91)
T ss_dssp CSCCCCSCS
T ss_pred CCCCCCCCC
Confidence 877665443
No 11
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=9.6e-22 Score=143.47 Aligned_cols=89 Identities=27% Similarity=0.551 Sum_probs=82.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 35 GRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 35 ~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
+.+..+.++|||+|||.++++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 3455678999999999999999999999999999999999998889999999999999999999999 999999999999
Q ss_pred EEEcccCCCC
Q 025401 115 VVFAEENRKK 124 (253)
Q Consensus 115 V~~a~~~~~~ 124 (253)
|.++.+....
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999876553
No 12
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.87 E-value=1.3e-21 Score=146.64 Aligned_cols=89 Identities=29% Similarity=0.519 Sum_probs=83.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+....++|||+|||..+++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 45567889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 025401 116 VFAEENRKK 124 (253)
Q Consensus 116 ~~a~~~~~~ 124 (253)
.|++.....
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876554
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.6e-22 Score=145.47 Aligned_cols=89 Identities=26% Similarity=0.435 Sum_probs=83.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||+++++++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 45567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 025401 116 VFAEENRKK 124 (253)
Q Consensus 116 ~~a~~~~~~ 124 (253)
.++......
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876543
No 14
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=5.3e-22 Score=145.90 Aligned_cols=89 Identities=39% Similarity=0.671 Sum_probs=82.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+.+..++|||+|||+.+++++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 44566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 025401 116 VFAEENRKK 124 (253)
Q Consensus 116 ~~a~~~~~~ 124 (253)
++++.....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999876543
No 15
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=142.90 Aligned_cols=88 Identities=32% Similarity=0.596 Sum_probs=82.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
.....++|||+|||+.+++++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|+.||+.||+..|+|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44667899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 025401 117 FAEENRKK 124 (253)
Q Consensus 117 ~a~~~~~~ 124 (253)
++......
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99876543
No 16
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=141.94 Aligned_cols=85 Identities=33% Similarity=0.442 Sum_probs=80.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
...++.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 45567789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccc
Q 025401 116 VFAEE 120 (253)
Q Consensus 116 ~~a~~ 120 (253)
+|++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99874
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.87 E-value=9.4e-22 Score=139.90 Aligned_cols=85 Identities=28% Similarity=0.481 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
+....++|||+|||.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|+.||+.||+..|+|+.|.|.
T Consensus 2 p~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 2 PLGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp ----CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccC
Q 025401 117 FAEEN 121 (253)
Q Consensus 117 ~a~~~ 121 (253)
|++.+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99854
No 18
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.9e-21 Score=143.78 Aligned_cols=87 Identities=25% Similarity=0.415 Sum_probs=80.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||+++++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+.|++ .|+|+.|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 4556778999999999999999999999999999999999988999999999999999999999999998 899999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
+++.....
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99986543
No 19
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=141.23 Aligned_cols=85 Identities=31% Similarity=0.514 Sum_probs=80.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...++|||+|||..+++++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 56789999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 025401 119 EENRK 123 (253)
Q Consensus 119 ~~~~~ 123 (253)
++...
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 20
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=1e-21 Score=139.10 Aligned_cols=83 Identities=33% Similarity=0.527 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
...+.++|||+|||+++++++|+++|.+||.|..|.|+.+..++..+|||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45677899999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred Ecc
Q 025401 117 FAE 119 (253)
Q Consensus 117 ~a~ 119 (253)
||+
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 21
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=143.08 Aligned_cols=87 Identities=29% Similarity=0.569 Sum_probs=80.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||+.+++++|+++|.+||.|+.|.|+.+ ++..++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 45567889999999999999999999999999999999887 7888999999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 025401 116 VFAEENRKK 124 (253)
Q Consensus 116 ~~a~~~~~~ 124 (253)
.++......
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2d9p_A 88 ALAQRKEER 96 (103)
T ss_dssp EECSSCCCC
T ss_pred EEecccccC
Confidence 999876543
No 22
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.9e-21 Score=140.26 Aligned_cols=88 Identities=31% Similarity=0.510 Sum_probs=80.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||+++++++|+++|.+||.|+.|.|+.+.. .++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 5566789999999999999999999999999999999998753 37899999999999999999999999999999999
Q ss_pred EEcccCCCCC
Q 025401 116 VFAEENRKKP 125 (253)
Q Consensus 116 ~~a~~~~~~~ 125 (253)
.++.......
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9998776543
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.8e-21 Score=140.52 Aligned_cols=87 Identities=20% Similarity=0.433 Sum_probs=80.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||.++++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344667899999999999999999999999999999999987 8899999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
.++++...
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99986643
No 24
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=143.54 Aligned_cols=87 Identities=23% Similarity=0.381 Sum_probs=80.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+..+.++|||+|||+++++++|+++|.+||.|+.|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 445667899999999999999999999999999999999886 6888999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
+++.....
T Consensus 89 ~~a~~~~~ 96 (114)
T 2do0_A 89 KMDERALP 96 (114)
T ss_dssp EECSCCCC
T ss_pred EEcccCCC
Confidence 99886544
No 25
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=2.1e-21 Score=136.80 Aligned_cols=82 Identities=32% Similarity=0.515 Sum_probs=78.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
+++|||+|||.++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred CC
Q 025401 121 NR 122 (253)
Q Consensus 121 ~~ 122 (253)
..
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 26
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.9e-21 Score=141.76 Aligned_cols=85 Identities=33% Similarity=0.468 Sum_probs=76.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||+++++++|+++|.+||.|+.|.|+.+ +.+++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 44566789999999999999999999999999999999653 457899999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
+|++....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99987654
No 27
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.86 E-value=7.9e-22 Score=151.22 Aligned_cols=87 Identities=34% Similarity=0.483 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
...++.++|||+|||+++++++|+++|.+||+|+.|.|+.++.++..+|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 45567789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEcccCC
Q 025401 116 VFAEENR 122 (253)
Q Consensus 116 ~~a~~~~ 122 (253)
+|+..++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998764
No 28
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=4.4e-21 Score=141.02 Aligned_cols=86 Identities=30% Similarity=0.431 Sum_probs=79.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+..+.++|||+|||+++++++|+++|.+|| |+.|.|+.+..++.++|||||+|.+.++|++|| .||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 4456678999999999999999999999997 999999999889999999999999999999999 79999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
+++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987654
No 29
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.1e-21 Score=142.84 Aligned_cols=88 Identities=24% Similarity=0.357 Sum_probs=82.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC------CCeec
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD------GQVLL 109 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~------g~~i~ 109 (253)
....+.++|||+|||+++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|| +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345667899999999999999999999999999999999998899999999999999999999999999 99999
Q ss_pred CeEEEEEEcccCCC
Q 025401 110 GRELTVVFAEENRK 123 (253)
Q Consensus 110 g~~l~V~~a~~~~~ 123 (253)
|+.|.|.++.+...
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999987654
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.2e-21 Score=140.57 Aligned_cols=86 Identities=28% Similarity=0.458 Sum_probs=80.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEE-EEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDI-YLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
.+.++|||+|||+++++++|+++|.+||.|..| .|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999888999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 025401 118 AEENRKK 124 (253)
Q Consensus 118 a~~~~~~ 124 (253)
+.+....
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.3e-21 Score=141.81 Aligned_cols=89 Identities=30% Similarity=0.592 Sum_probs=82.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEccc-CCCCCCceEEEEEEcCHHHHHHHHHhh-CCCeecCeEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRD-YYSGEPRGFGFIQFVEPDDAAEAKRHM-DGQVLLGREL 113 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~Al~~l-~g~~i~g~~l 113 (253)
......++|||+|||..+++++|+++|.+||.|+.|.|+.+ ..++.++|||||+|.+.++|++||+.| |+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 45567789999999999999999999999999999999988 778999999999999999999999999 9999999999
Q ss_pred EEEEcccCCCC
Q 025401 114 TVVFAEENRKK 124 (253)
Q Consensus 114 ~V~~a~~~~~~ 124 (253)
.|+|++.....
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 32
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.7e-21 Score=141.08 Aligned_cols=86 Identities=24% Similarity=0.430 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCC-CCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYS-GEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
+..+.++|||+|||+++++++|+++|.+|| |+.|.|+.+..+ +.++|||||+|.+.++|++|| .||+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 446678999999999999999999999999 999999999877 899999999999999999999 89999999999999
Q ss_pred EEcccCCCC
Q 025401 116 VFAEENRKK 124 (253)
Q Consensus 116 ~~a~~~~~~ 124 (253)
+++......
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 33
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.8e-21 Score=139.32 Aligned_cols=87 Identities=30% Similarity=0.422 Sum_probs=79.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+....++|||+|||+.+++++|+++|.+||.|+.|.|+.+..+ .+|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 45567899999999999999999999999999999999987533 5899999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 025401 116 VFAEENRKK 124 (253)
Q Consensus 116 ~~a~~~~~~ 124 (253)
.|++.....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999876543
No 34
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=141.72 Aligned_cols=87 Identities=21% Similarity=0.400 Sum_probs=81.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCee-EEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE--
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIK-DIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE-- 112 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~-- 112 (253)
....+.++|||+|||+++++++|+++|.+||.|+ .|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|..
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3456789999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred --EEEEEcccCC
Q 025401 113 --LTVVFAEENR 122 (253)
Q Consensus 113 --l~V~~a~~~~ 122 (253)
|.|+||+...
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999998654
No 35
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=1.8e-21 Score=148.19 Aligned_cols=88 Identities=24% Similarity=0.389 Sum_probs=81.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
.....++|||+|||+.+++++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 025401 117 FAEENRKK 124 (253)
Q Consensus 117 ~a~~~~~~ 124 (253)
||......
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876543
No 36
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=144.28 Aligned_cols=86 Identities=29% Similarity=0.553 Sum_probs=80.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
+.+..++|||+|||.++++++|+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34667899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EcccCCC
Q 025401 117 FAEENRK 123 (253)
Q Consensus 117 ~a~~~~~ 123 (253)
+++....
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9986544
No 37
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=4.4e-21 Score=148.45 Aligned_cols=90 Identities=24% Similarity=0.498 Sum_probs=83.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+....++|||+|||.++++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEcccCCCCC
Q 025401 116 VFAEENRKKP 125 (253)
Q Consensus 116 ~~a~~~~~~~ 125 (253)
.+++......
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999775543
No 38
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=141.99 Aligned_cols=84 Identities=20% Similarity=0.385 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCC--eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC----eecC
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGA--IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ----VLLG 110 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~--v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~----~i~g 110 (253)
....=.||||+|||+.+|+++|+++|++||. |..|.|+.++.++.++|||||+|.+.++|++||+.||+. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3445578999999999999999999999995 678999999999999999999999999999999999997 5999
Q ss_pred eEEEEEEccc
Q 025401 111 RELTVVFAEE 120 (253)
Q Consensus 111 ~~l~V~~a~~ 120 (253)
+.|.|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999974
No 39
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=3.8e-21 Score=142.19 Aligned_cols=83 Identities=29% Similarity=0.438 Sum_probs=78.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+..+.++|||+|||+.+++++|+++|.+||.|+.|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 455778999999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred EEcc
Q 025401 116 VFAE 119 (253)
Q Consensus 116 ~~a~ 119 (253)
++|+
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 40
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=4.7e-21 Score=139.07 Aligned_cols=84 Identities=20% Similarity=0.337 Sum_probs=79.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46799999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred cCCC
Q 025401 120 ENRK 123 (253)
Q Consensus 120 ~~~~ 123 (253)
+...
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 41
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=7.3e-21 Score=140.15 Aligned_cols=87 Identities=25% Similarity=0.437 Sum_probs=80.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC---eEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG---REL 113 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g---~~l 113 (253)
.....++|||+|||+++++++|+++|.+||.|+.|.|+.+. ++.++|||||+|.+.++|++||+.||+..|.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999887 78899999999999999999999999999998 999
Q ss_pred EEEEcccCCCC
Q 025401 114 TVVFAEENRKK 124 (253)
Q Consensus 114 ~V~~a~~~~~~ 124 (253)
.|.+|.....+
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999977654
No 42
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=3.5e-21 Score=142.12 Aligned_cols=88 Identities=20% Similarity=0.428 Sum_probs=81.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee---cCeE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL---LGRE 112 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i---~g~~ 112 (253)
......++|||+|||.++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..| .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 4556678999999999999999999999999999999999988899999999999999999999999999988 8999
Q ss_pred EEEEEcccCCC
Q 025401 113 LTVVFAEENRK 123 (253)
Q Consensus 113 l~V~~a~~~~~ 123 (253)
|.|.++.....
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 43
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=6.5e-21 Score=150.47 Aligned_cols=87 Identities=25% Similarity=0.315 Sum_probs=81.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
...+.++|||+|||+++++++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCC
Q 025401 117 FAEENRK 123 (253)
Q Consensus 117 ~a~~~~~ 123 (253)
||+....
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9986544
No 44
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.4e-21 Score=140.20 Aligned_cols=85 Identities=26% Similarity=0.499 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCC---CCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYY---SGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+.++|||+|||+++++++|+++|.+||.|..|.|+.+.. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999998765 5578999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987654
No 45
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.8e-21 Score=140.68 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
..+..++|||+|||+++++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999988888888889999999999999999999999999999999999999
Q ss_pred EcccC
Q 025401 117 FAEEN 121 (253)
Q Consensus 117 ~a~~~ 121 (253)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98743
No 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.7e-21 Score=141.99 Aligned_cols=85 Identities=25% Similarity=0.411 Sum_probs=80.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccCC
Q 025401 118 AEENR 122 (253)
Q Consensus 118 a~~~~ 122 (253)
|....
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98754
No 47
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.2e-21 Score=138.25 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCe
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIR----RPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 111 (253)
.+....++|||+|||+.+++++|+ ++|.+||.|+.|.|+.+..+ ++||||+|.+.++|++||+.|||..|+|+
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 345567899999999999999999 99999999999999988655 78999999999999999999999999999
Q ss_pred EEEEEEcccCCC
Q 025401 112 ELTVVFAEENRK 123 (253)
Q Consensus 112 ~l~V~~a~~~~~ 123 (253)
.|.|++|++...
T Consensus 81 ~l~V~~a~~~~~ 92 (96)
T 2dgx_A 81 KILVSLATGASG 92 (96)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEEcCCCCC
Confidence 999999986654
No 48
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-21 Score=148.80 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+....++|||+|||+++++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++||+ ||+..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 455677999999999999999999999999999886666666789999999999999999999999 9999999999999
Q ss_pred EEcccC
Q 025401 116 VFAEEN 121 (253)
Q Consensus 116 ~~a~~~ 121 (253)
.++...
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998754
No 49
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.4e-21 Score=141.73 Aligned_cols=87 Identities=24% Similarity=0.394 Sum_probs=81.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCee--------EEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIK--------DIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL 108 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 108 (253)
.....++|||+|||+.+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||+.||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456778999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred cCeEEEEEEcccCCC
Q 025401 109 LGRELTVVFAEENRK 123 (253)
Q Consensus 109 ~g~~l~V~~a~~~~~ 123 (253)
.|+.|.|.+++....
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987654
No 50
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.85 E-value=1.2e-21 Score=141.77 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
..+..++|||+|||+++++++|+++|.+||.|..+.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 34456899999999999999999999999999988888888889999999999999999999999999999999999999
Q ss_pred Eccc
Q 025401 117 FAEE 120 (253)
Q Consensus 117 ~a~~ 120 (253)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8763
No 51
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.85 E-value=6.7e-21 Score=141.61 Aligned_cols=86 Identities=21% Similarity=0.411 Sum_probs=80.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35568899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 025401 118 AEENRK 123 (253)
Q Consensus 118 a~~~~~ 123 (253)
+.....
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987643
No 52
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=4.6e-21 Score=138.63 Aligned_cols=84 Identities=26% Similarity=0.447 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
...+..++|||+|||+.+++++|+++|.+||.|+.|.|+.+.. +.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 3456678999999999999999999999999999999998874 888999999999999999999999999999999999
Q ss_pred EEccc
Q 025401 116 VFAEE 120 (253)
Q Consensus 116 ~~a~~ 120 (253)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 53
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.85 E-value=2.4e-21 Score=145.53 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=65.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE-----E
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE-----L 113 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~-----l 113 (253)
...++|||+|||+++++++|+++|.+||+|+.|.|+.+ |||||+|++.++|++||+.||+.+|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999765 89999999999999999999999999998 5
Q ss_pred EEEEcc
Q 025401 114 TVVFAE 119 (253)
Q Consensus 114 ~V~~a~ 119 (253)
.|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 555544
No 54
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.6e-21 Score=141.34 Aligned_cols=88 Identities=25% Similarity=0.424 Sum_probs=81.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
...+..++|||+|||+.+++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+. ++..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456778999999999999999999999999999999999988999999999999999999999997 999999999999
Q ss_pred EEcccCCCC
Q 025401 116 VFAEENRKK 124 (253)
Q Consensus 116 ~~a~~~~~~ 124 (253)
.++.+....
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 55
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=139.57 Aligned_cols=84 Identities=27% Similarity=0.424 Sum_probs=79.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCe
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKD--------IYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQV 107 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 107 (253)
.+..+.++|||+|||.++++++|+++|.+||.|.. |.|+.++.++..+|||||+|.+.++|+.||+.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45567789999999999999999999999999999 9999998899999999999999999999999999999
Q ss_pred ecCeEEEEEEcc
Q 025401 108 LLGRELTVVFAE 119 (253)
Q Consensus 108 i~g~~l~V~~a~ 119 (253)
|.|+.|.|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 56
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=6.7e-21 Score=143.04 Aligned_cols=81 Identities=22% Similarity=0.422 Sum_probs=74.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
.++|||+|||+++++++|+++|.+||.|+.|.|+.+. +.++|||||+|.+.++|+.||+.||+..|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999874 34789999999999999999999999999999999999886
Q ss_pred CCC
Q 025401 121 NRK 123 (253)
Q Consensus 121 ~~~ 123 (253)
...
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 57
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.7e-21 Score=143.41 Aligned_cols=83 Identities=23% Similarity=0.416 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...++|||+|||.++++++|+++|.+||.|+.|.|+.+..++..+|||||+|.+.++|++|| .||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 44579999999999999999999999999999999999888999999999999999999999 89999999999999999
Q ss_pred ccCC
Q 025401 119 EENR 122 (253)
Q Consensus 119 ~~~~ 122 (253)
+...
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 8654
No 58
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=5.1e-21 Score=136.25 Aligned_cols=83 Identities=28% Similarity=0.528 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCC-CceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGE-PRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~-~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
.+++|||+|||.++++++|+++|.+||.|..|.|+.+..++. .+|||||+|.+.++|++||+.|||..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999998876655 8899999999999999999999999999999999999
Q ss_pred ccCC
Q 025401 119 EENR 122 (253)
Q Consensus 119 ~~~~ 122 (253)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 59
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=7.8e-21 Score=136.60 Aligned_cols=86 Identities=27% Similarity=0.447 Sum_probs=79.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+....++|||+|||.++++++|+++|.+||.|..|.|+.+ ++..+|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34566789999999999999999999999999999999874 7888999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
.+++....
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 99987654
No 60
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.5e-21 Score=140.18 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=80.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcc-cCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCe-ecCeEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQ-FGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQV-LLGREL 113 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~-i~g~~l 113 (253)
.+..+.++|||+|||+++++++|+++|.+ ||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+.. |+|+.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34566789999999999999999999999 9999999999998 89999999999999999999999999999 999999
Q ss_pred EEEEcccCCC
Q 025401 114 TVVFAEENRK 123 (253)
Q Consensus 114 ~V~~a~~~~~ 123 (253)
.|.++.....
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999976544
No 61
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=1.1e-20 Score=142.18 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+....++|||+|||+++++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEcc
Q 025401 116 VFAE 119 (253)
Q Consensus 116 ~~a~ 119 (253)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9974
No 62
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=1.2e-21 Score=143.61 Aligned_cols=84 Identities=17% Similarity=0.243 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCC------CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC-
Q 025401 38 RDLPTSLLVRNLRH------DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG- 110 (253)
Q Consensus 38 ~~~~~~i~V~nLp~------~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g- 110 (253)
....++|||+|||+ ++++++|.++|.+||.|..|.|+.+..|+.++|||||+|.+.++|++||+.|||..|.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34568999999999 99999999999999999999999999899999999999999999999999999999999
Q ss_pred eEEEEEEcccC
Q 025401 111 RELTVVFAEEN 121 (253)
Q Consensus 111 ~~l~V~~a~~~ 121 (253)
+.|.|.+|.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999753
No 63
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=2.3e-21 Score=149.81 Aligned_cols=89 Identities=44% Similarity=0.715 Sum_probs=82.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+....++|||+|||+++++++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44556789999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 025401 116 VFAEENRKK 124 (253)
Q Consensus 116 ~~a~~~~~~ 124 (253)
.|++.....
T Consensus 122 ~~a~~~~~~ 130 (135)
T 2lea_A 122 QMARYGRPP 130 (135)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 64
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=9.1e-22 Score=141.27 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFG--AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
.+|||+|||+++++++|+++|.+|| .|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998899999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 025401 120 ENRKK 124 (253)
Q Consensus 120 ~~~~~ 124 (253)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 65
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.84 E-value=3.5e-20 Score=136.23 Aligned_cols=81 Identities=32% Similarity=0.541 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
...+.++|||+|||+++++++|+++|.+||.|+.|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567899999999999999999999999999999987 4599999999999999999999999999999999
Q ss_pred EcccCCCCC
Q 025401 117 FAEENRKKP 125 (253)
Q Consensus 117 ~a~~~~~~~ 125 (253)
|+++.....
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 998776544
No 66
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.9e-20 Score=135.28 Aligned_cols=86 Identities=21% Similarity=0.444 Sum_probs=79.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||+.+++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+ ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 455677899999999999999999999999999999999998889999999999999999999998 478999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99987654
No 67
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.9e-21 Score=139.96 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC--CeecCeEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG--QVLLGRELTV 115 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g--~~i~g~~l~V 115 (253)
..+.++|||+|||+.+++++|+++|++||.|+.|.|+.+ +|||||+|++.++|+.||+.|++ ..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999875 69999999999999999998864 7999999999
Q ss_pred EEcccCCCCC
Q 025401 116 VFAEENRKKP 125 (253)
Q Consensus 116 ~~a~~~~~~~ 125 (253)
+||+.+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998765543
No 68
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=144.48 Aligned_cols=83 Identities=33% Similarity=0.534 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||..+++++|+++|.+||.|+.|.|+.++.++..+|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44567889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEc
Q 025401 116 VFA 118 (253)
Q Consensus 116 ~~a 118 (253)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 69
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=9.2e-21 Score=140.77 Aligned_cols=86 Identities=33% Similarity=0.545 Sum_probs=80.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+...+++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEcccC
Q 025401 116 VFAEEN 121 (253)
Q Consensus 116 ~~a~~~ 121 (253)
.+++++
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998865
No 70
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=133.69 Aligned_cols=84 Identities=13% Similarity=0.250 Sum_probs=78.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+....++|||+|||+++++++|+++|.+| .|..|.|+.+ .++.++|||||+|.+.++|++||+ ||+..|+|+.|.|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 445677899999999999999999999999 9999999988 688999999999999999999999 9999999999999
Q ss_pred EEcccCC
Q 025401 116 VFAEENR 122 (253)
Q Consensus 116 ~~a~~~~ 122 (253)
.++....
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9998663
No 71
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=2e-20 Score=133.51 Aligned_cols=80 Identities=24% Similarity=0.531 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
.++|||+|||.++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++|| .||+..|+|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999999889999999999999999999999 8999999999999999876
Q ss_pred C
Q 025401 121 N 121 (253)
Q Consensus 121 ~ 121 (253)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 72
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=2.3e-20 Score=132.84 Aligned_cols=82 Identities=26% Similarity=0.431 Sum_probs=76.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+ +++..|+|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 455678899999999999999999999999999999999998899999999999999999999997 5888999999999
Q ss_pred EEc
Q 025401 116 VFA 118 (253)
Q Consensus 116 ~~a 118 (253)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 73
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=2.7e-20 Score=141.34 Aligned_cols=90 Identities=27% Similarity=0.393 Sum_probs=83.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||..+++++|+++|.+||.|+.|.|+.+. ++..+|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 455778899999999999999999999999999999999987 8899999999999999999999999999999999999
Q ss_pred EEcccCCCCCC
Q 025401 116 VFAEENRKKPS 126 (253)
Q Consensus 116 ~~a~~~~~~~~ 126 (253)
++|......+.
T Consensus 109 ~~a~~~~~~~~ 119 (124)
T 2kt5_A 109 QLVASQIDLEH 119 (124)
T ss_dssp EEECCTTCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998765543
No 74
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.83 E-value=2.6e-20 Score=148.52 Aligned_cols=86 Identities=21% Similarity=0.411 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|||..|.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 025401 118 AEENRK 123 (253)
Q Consensus 118 a~~~~~ 123 (253)
+.....
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 987654
No 75
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.3e-20 Score=137.15 Aligned_cols=85 Identities=22% Similarity=0.432 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee-------
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL------- 108 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i------- 108 (253)
......++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|+.||+.|||..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 445667899999999999999999999999999999999987 889999999999999999999999999999
Q ss_pred -cCeEEEEEEcccC
Q 025401 109 -LGRELTVVFAEEN 121 (253)
Q Consensus 109 -~g~~l~V~~a~~~ 121 (253)
.++.|.|.||.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999998854
No 76
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=138.17 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=76.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||+++++++|+++|.+||. +.|.|+.++ ++.++|||||+|.+.++|++||+ ||+..|+++.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 34466789999999999999999999999995 599999987 89999999999999999999996 7999999999999
Q ss_pred EEcccCC
Q 025401 116 VFAEENR 122 (253)
Q Consensus 116 ~~a~~~~ 122 (253)
.++....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9887554
No 77
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=136.50 Aligned_cols=85 Identities=20% Similarity=0.345 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKD-IYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
.+....++|||+|||+++++++|+++|.+||.|.. |.|+.+ .++.++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 45566789999999999999999999999999987 888887 6899999999999999999999996 99999999999
Q ss_pred EEEcccCC
Q 025401 115 VVFAEENR 122 (253)
Q Consensus 115 V~~a~~~~ 122 (253)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99987554
No 78
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=3.2e-20 Score=138.01 Aligned_cols=88 Identities=22% Similarity=0.371 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||.++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.+ +..|+|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 44566789999999999999999999999999999999999888999999999999999999999976 59999999999
Q ss_pred EEcccCCCC
Q 025401 116 VFAEENRKK 124 (253)
Q Consensus 116 ~~a~~~~~~ 124 (253)
.++......
T Consensus 99 ~~a~~~~~~ 107 (109)
T 2rs2_A 99 KVAFPRRAQ 107 (109)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 79
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=148.11 Aligned_cols=83 Identities=12% Similarity=0.258 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFG--AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
...++|||+|||+++++++|+++|.+|| .|+.|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EcccC
Q 025401 117 FAEEN 121 (253)
Q Consensus 117 ~a~~~ 121 (253)
+|...
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98753
No 80
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.8e-20 Score=136.68 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCC-eeEEEEc-ccCCCCCCceEEEEEEcCHHHHHHHHHhhC--CCeecCeEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGA-IKDIYLP-RDYYSGEPRGFGFIQFVEPDDAAEAKRHMD--GQVLLGREL 113 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~Al~~l~--g~~i~g~~l 113 (253)
..+.++|||+|||+.+++++|+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|+.||+.|| +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999998 777788999999999999999999999996 589999999
Q ss_pred EEEEcccCCCC
Q 025401 114 TVVFAEENRKK 124 (253)
Q Consensus 114 ~V~~a~~~~~~ 124 (253)
.|.||++....
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876553
No 81
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.83 E-value=2.7e-20 Score=150.23 Aligned_cols=87 Identities=28% Similarity=0.407 Sum_probs=80.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
...+.++|||+|||+.+++++|+++|.+||.|+.|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 025401 117 FAEENRKK 124 (253)
Q Consensus 117 ~a~~~~~~ 124 (253)
||......
T Consensus 163 ~a~~~~~~ 170 (177)
T 2f3j_A 163 LVASQIDL 170 (177)
T ss_dssp EESSGGGG
T ss_pred EecCCCCC
Confidence 99865443
No 82
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=139.94 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCe-eEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAI-KDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
......++|||+|||+++++++|+++|.+||.| ..|.|+.+. ++.++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 345667899999999999999999999999999 889999988 899999999999999999999996 99999999999
Q ss_pred EEEcccCC
Q 025401 115 VVFAEENR 122 (253)
Q Consensus 115 V~~a~~~~ 122 (253)
|.++....
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99998654
No 83
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.5e-20 Score=131.61 Aligned_cols=81 Identities=22% Similarity=0.492 Sum_probs=74.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||+++++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4456778999999999999999999999999999999973 49999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 025401 116 VFAEENRKK 124 (253)
Q Consensus 116 ~~a~~~~~~ 124 (253)
++++.....
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999876543
No 84
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.83 E-value=1.2e-20 Score=145.76 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCC---eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCe
Q 025401 35 GRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGA---IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 35 ~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 111 (253)
+.+....++|||+|||+++|+++|+++|.+||. |..|.|+.+.. +.++|||||+|.+.++|++||+ ||+..|+|+
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 455677899999999999999999999999999 88999998876 8999999999999999999999 999999999
Q ss_pred EEEEEEcccC
Q 025401 112 ELTVVFAEEN 121 (253)
Q Consensus 112 ~l~V~~a~~~ 121 (253)
.|.|.++...
T Consensus 116 ~i~V~~a~~~ 125 (136)
T 2hgl_A 116 YIEVFKSHRT 125 (136)
T ss_dssp EEEEEECCHH
T ss_pred EEEEEECChH
Confidence 9999998643
No 85
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=139.80 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=76.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC--CeecCeE
Q 025401 35 GRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG--QVLLGRE 112 (253)
Q Consensus 35 ~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g--~~i~g~~ 112 (253)
....++.++|||+|||+++++++|+++|++||.|+.|.|+.+ +|||||+|++.++|++||+.|++ ..|.|+.
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 345567789999999999999999999999999999999876 79999999999999999998874 6899999
Q ss_pred EEEEEcccCCCCC
Q 025401 113 LTVVFAEENRKKP 125 (253)
Q Consensus 113 l~V~~a~~~~~~~ 125 (253)
|.|+||+....+.
T Consensus 99 l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 99 IYIQFSNHKELKT 111 (119)
T ss_dssp CEEEECSSSSCCC
T ss_pred EEEEEccCCCCCc
Confidence 9999998776654
No 86
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.4e-20 Score=132.94 Aligned_cols=80 Identities=30% Similarity=0.414 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec--CeEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL--GRELT 114 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~--g~~l~ 114 (253)
..++.++|||+|||.++++++|+++|.+||.|+.|.|+.+ ++||||+|.+.++|++||+.||+..|. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456689999999999999999999999999999999764 689999999999999999999999999 99999
Q ss_pred EEEcccCC
Q 025401 115 VVFAEENR 122 (253)
Q Consensus 115 V~~a~~~~ 122 (253)
|+|+++..
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998654
No 87
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-20 Score=138.25 Aligned_cols=84 Identities=25% Similarity=0.383 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...++|||+|||+++++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|+.||+. ++..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4468999999999999999999999999999999999988899999999999999999999997 999999999999999
Q ss_pred ccCCC
Q 025401 119 EENRK 123 (253)
Q Consensus 119 ~~~~~ 123 (253)
.....
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87654
No 88
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-20 Score=137.06 Aligned_cols=79 Identities=14% Similarity=0.259 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC--CeecCeEEE
Q 025401 38 RDLPTSLLVRNLRH-DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG--QVLLGRELT 114 (253)
Q Consensus 38 ~~~~~~i~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g--~~i~g~~l~ 114 (253)
.++.++|||+|||+ .+++++|+++|.+||.|..|.|+.+ ++||||+|++.++|+.||+.||+ ..|.|+.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45678999999999 9999999999999999999999876 58999999999999999999886 469999999
Q ss_pred EEEcccCC
Q 025401 115 VVFAEENR 122 (253)
Q Consensus 115 V~~a~~~~ 122 (253)
|+||+..+
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998543
No 89
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.4e-20 Score=138.28 Aligned_cols=86 Identities=16% Similarity=0.291 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH---HHhcccCCeeEEEEcccCCCC---CCceEEEEEEcCHHHHHHHHHhhCCCeecC
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIR---RPFEQFGAIKDIYLPRDYYSG---EPRGFGFIQFVEPDDAAEAKRHMDGQVLLG 110 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~---~~F~~~G~v~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 110 (253)
.....++|||+|||+++++++|. ++|.+||+|+.|.|+.+..++ .++|||||+|.+.++|++||+.||+..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34557899999999999999999 999999999999998887644 456999999999999999999999999999
Q ss_pred eEEEEEEcccCC
Q 025401 111 RELTVVFAEENR 122 (253)
Q Consensus 111 ~~l~V~~a~~~~ 122 (253)
+.|.|++|+++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998664
No 90
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=132.29 Aligned_cols=81 Identities=23% Similarity=0.440 Sum_probs=74.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+....++|||+|||.++++++|+++|.+||.|+.|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 345677899999999999999999999999999999997 579999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 025401 116 VFAEENRKK 124 (253)
Q Consensus 116 ~~a~~~~~~ 124 (253)
++++.....
T Consensus 75 ~~a~~~~~~ 83 (90)
T 2dnq_A 75 EASKNKSKA 83 (90)
T ss_dssp ECSSCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 91
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.8e-20 Score=133.86 Aligned_cols=84 Identities=12% Similarity=0.198 Sum_probs=74.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh--CCCeecCeEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM--DGQVLLGREL 113 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l--~g~~i~g~~l 113 (253)
...++.++|||+|||+.+++++|+++|.+||.|+.|.|+.+ +|||||+|++.++|+.||+.| ++..|.|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34456789999999999999999999999999999998865 799999999999999999976 5678999999
Q ss_pred EEEEcccCCCCC
Q 025401 114 TVVFAEENRKKP 125 (253)
Q Consensus 114 ~V~~a~~~~~~~ 125 (253)
.|+|++....+.
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 999999766543
No 92
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=9.1e-21 Score=145.50 Aligned_cols=87 Identities=20% Similarity=0.395 Sum_probs=80.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE--EEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC----eec
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKD--IYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ----VLL 109 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~----~i~ 109 (253)
......++|||+|||+++++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+. +|++||+.||+. .|+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34466789999999999999999999999999976 99999999999999999999999 999999999999 999
Q ss_pred CeEEEEEEcccCCC
Q 025401 110 GRELTVVFAEENRK 123 (253)
Q Consensus 110 g~~l~V~~a~~~~~ 123 (253)
|+.|.|+++++...
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987543
No 93
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=134.18 Aligned_cols=82 Identities=27% Similarity=0.483 Sum_probs=73.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+.+..++|||+|||+++++++|+++|.+||.|. +.|+.+ ..+|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4556688999999999999999999999999996 566543 46899999999999999999999999999999999
Q ss_pred EEcccCC
Q 025401 116 VFAEENR 122 (253)
Q Consensus 116 ~~a~~~~ 122 (253)
+++++..
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9998754
No 94
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.8e-20 Score=133.19 Aligned_cols=84 Identities=23% Similarity=0.403 Sum_probs=74.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
....+.++|||+|||+++++++|+++|.+||.| .|+.+ .++..+|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345667999999999999999999999999987 45555 57889999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
+++++...
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99987643
No 95
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=3.9e-20 Score=130.93 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
....|||+||++.+||++|+++|.+||+|..|.|+.. +|||||+|.+.++|++||+.||+..|.|+.|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~------kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN------QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC------CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3567999999999999999999999999999999763 8999999999999999999999999999999999985
Q ss_pred c
Q 025401 120 E 120 (253)
Q Consensus 120 ~ 120 (253)
+
T Consensus 80 e 80 (89)
T 2wbr_A 80 E 80 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 96
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=3.7e-20 Score=139.65 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=77.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCC---eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGA---IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE 112 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 112 (253)
.+....++|||+|||+++|+++|+++|..||. |..|.|+.+.. +.++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 44566789999999999999999999999999 89999998875 8899999999999999999999 9999999999
Q ss_pred EEEEEcccC
Q 025401 113 LTVVFAEEN 121 (253)
Q Consensus 113 l~V~~a~~~ 121 (253)
|.|.++...
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998754
No 97
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=134.10 Aligned_cols=81 Identities=14% Similarity=0.239 Sum_probs=72.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCe--ecCeEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQV--LLGREL 113 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~--i~g~~l 113 (253)
...++..+|||+|||..+++++|.++|.+||.|+.|.|+.. +|||||+|++.++|+.||+.|++.. |.|+.|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34467789999999999999999999999999999999754 6899999999999999999999875 789999
Q ss_pred EEEEcccCC
Q 025401 114 TVVFAEENR 122 (253)
Q Consensus 114 ~V~~a~~~~ 122 (253)
.|+|++.+.
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998653
No 98
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2e-20 Score=137.84 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
.....+|||+|||+++|+++|+++|++||.|..|.|+.+.. +.++|||||+|.+.++|+.||. |++..|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999876 8899999999999999999999 899999999999999
Q ss_pred ccc
Q 025401 118 AEE 120 (253)
Q Consensus 118 a~~ 120 (253)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 775
No 99
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-20 Score=137.58 Aligned_cols=85 Identities=26% Similarity=0.500 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34578999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 025401 119 EENRK 123 (253)
Q Consensus 119 ~~~~~ 123 (253)
.....
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 86644
No 100
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.3e-20 Score=130.86 Aligned_cols=80 Identities=19% Similarity=0.428 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||+++++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4456778999999999999999999999999999999973 49999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
.+++....
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987644
No 101
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.3e-21 Score=135.55 Aligned_cols=82 Identities=17% Similarity=0.277 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
..++++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999988765
Q ss_pred cc
Q 025401 118 AE 119 (253)
Q Consensus 118 a~ 119 (253)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 102
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=6.5e-20 Score=144.81 Aligned_cols=88 Identities=44% Similarity=0.726 Sum_probs=82.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|||..|.|+.|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 025401 117 FAEENRKK 124 (253)
Q Consensus 117 ~a~~~~~~ 124 (253)
++++....
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99876543
No 103
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=128.78 Aligned_cols=78 Identities=28% Similarity=0.408 Sum_probs=72.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh-CCCeecCeEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM-DGQVLLGRELT 114 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l-~g~~i~g~~l~ 114 (253)
......++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|+.||+.| ++..|+|+.|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34456789999999999999999999999999999999875 689999999999999999998 99999999999
Q ss_pred EEEcc
Q 025401 115 VVFAE 119 (253)
Q Consensus 115 V~~a~ 119 (253)
|+||+
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 104
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.9e-20 Score=134.85 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC--eecCeEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ--VLLGRELT 114 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~--~i~g~~l~ 114 (253)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|++.++|++||+.|++. .|.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999998764 689999999999999999988654 59999999
Q ss_pred EEEcccCCCC
Q 025401 115 VVFAEENRKK 124 (253)
Q Consensus 115 V~~a~~~~~~ 124 (253)
|+|++.....
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9999876554
No 105
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=133.17 Aligned_cols=85 Identities=25% Similarity=0.445 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
....+.++|||+|||+++++++|+++|..|+ .|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4456778999999999999999999999874 5667777778889999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
+|+++...
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99986543
No 106
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-20 Score=136.97 Aligned_cols=84 Identities=25% Similarity=0.419 Sum_probs=74.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccC-CCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDY-YSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
......++|||+|||.++++++|+++|.+|| |..|.|+.+. .++.++|||||+|.+.++|++|| .|||..|+|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 4456679999999999999999999999999 9999999887 58999999999999999999999 7999999999999
Q ss_pred EEEcccC
Q 025401 115 VVFAEEN 121 (253)
Q Consensus 115 V~~a~~~ 121 (253)
|++++..
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998865
No 107
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=7.6e-20 Score=138.75 Aligned_cols=82 Identities=29% Similarity=0.502 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
..++|||+|||.++++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|+.|| .||+..|+|+.|.|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999889999999999999999999999 799999999999999988
Q ss_pred cCC
Q 025401 120 ENR 122 (253)
Q Consensus 120 ~~~ 122 (253)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 108
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=2.4e-19 Score=133.27 Aligned_cols=79 Identities=22% Similarity=0.478 Sum_probs=72.3
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 36 RGRDLPTSLLVRNLRHD-CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
.+....++|||+|||++ +++++|+++|.+||.|+.|.| .++||||+|.+.++|+.||+.||+..|+|+.|.
T Consensus 22 ~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 22 DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34456689999999999 999999999999999999998 368999999999999999999999999999999
Q ss_pred EEEcccCC
Q 025401 115 VVFAEENR 122 (253)
Q Consensus 115 V~~a~~~~ 122 (253)
|++++...
T Consensus 94 V~~a~~~~ 101 (110)
T 1wf1_A 94 INMAGEPK 101 (110)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99998544
No 109
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.9e-20 Score=135.85 Aligned_cols=85 Identities=32% Similarity=0.542 Sum_probs=77.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 35 GRGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 35 ~~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
.......++|||+|||.++++++|+++|++||.|+.|.|+.+. +..+|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456678999999999999999999999999999999998874 34789999999999999999999999999999999
Q ss_pred EEEcccC
Q 025401 115 VVFAEEN 121 (253)
Q Consensus 115 V~~a~~~ 121 (253)
|++++..
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9998865
No 110
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=5.1e-20 Score=137.40 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.....++|||+|||+++++++|+++|.+|| +|..|.|+.. .++|||||+|.+.++|++||+.|||.+|+|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 445678999999999999999999999999 8999988632 36899999999999999999999999999999999
Q ss_pred EEcccC
Q 025401 116 VFAEEN 121 (253)
Q Consensus 116 ~~a~~~ 121 (253)
++++..
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998743
No 111
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=2.5e-20 Score=128.87 Aligned_cols=75 Identities=27% Similarity=0.408 Sum_probs=72.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
+|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998889999999999999999999998 9999999999999875
No 112
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=132.49 Aligned_cols=81 Identities=32% Similarity=0.542 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
...+.++|||+|||+.+++++|+++|.+||.|+.|.|+.+ +|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 4456789999999999999999999999999999999865 6899999999999999999999999999999999
Q ss_pred EcccCCC
Q 025401 117 FAEENRK 123 (253)
Q Consensus 117 ~a~~~~~ 123 (253)
+++....
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9987543
No 113
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.81 E-value=9.6e-20 Score=134.45 Aligned_cols=84 Identities=21% Similarity=0.419 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCC------CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC
Q 025401 37 GRDLPTSLLVRNLRHDC------RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG 110 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~------te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 110 (253)
.....++|||+|||+.+ ++++|+++|.+||.|..|.|+ ..++.++|||||+|.+.++|+.||..|||..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34557899999999999 789999999999999999988 3578899999999999999999999999999999
Q ss_pred e-EEEEEEcccCC
Q 025401 111 R-ELTVVFAEENR 122 (253)
Q Consensus 111 ~-~l~V~~a~~~~ 122 (253)
+ .|.|.++....
T Consensus 89 ~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 QHTFRVNLFTDFD 101 (105)
T ss_dssp TCEEEEECSCCCC
T ss_pred CceEEEEEcchHh
Confidence 8 99999987543
No 114
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=133.58 Aligned_cols=81 Identities=19% Similarity=0.397 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
.....++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|+.||+.||+..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999876 6899999999999999999999999999999999
Q ss_pred EcccCCC
Q 025401 117 FAEENRK 123 (253)
Q Consensus 117 ~a~~~~~ 123 (253)
|++....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9987654
No 115
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3e-20 Score=129.00 Aligned_cols=76 Identities=24% Similarity=0.455 Sum_probs=73.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|+ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998889999999999999999999999999 9999999999987
No 116
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=5.5e-20 Score=154.29 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFG--AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
..++|||+||+++||+++|+++|.+|| .|+.|.|+.++.++.++|||||+|.+.++|++||+.||++.|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 025401 118 AEEN 121 (253)
Q Consensus 118 a~~~ 121 (253)
|+..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 117
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-20 Score=140.27 Aligned_cols=89 Identities=22% Similarity=0.349 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+..+.++|||+|||.++++++|+++|.+||.|..|.+..+..++.++|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456789999999999999999999999999843322222227778999999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 025401 116 VFAEENRKK 124 (253)
Q Consensus 116 ~~a~~~~~~ 124 (253)
+|++.....
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999876554
No 118
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=1.7e-20 Score=134.30 Aligned_cols=82 Identities=28% Similarity=0.509 Sum_probs=73.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
++|||+|||.++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.+ |+.|+..|||..|+|+.|.|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999888999999999999999 99999999999999999999999876
Q ss_pred CCC
Q 025401 122 RKK 124 (253)
Q Consensus 122 ~~~ 124 (253)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 119
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=2e-19 Score=133.53 Aligned_cols=80 Identities=29% Similarity=0.535 Sum_probs=72.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||.++++++|+++|.+||.|..|.|+ +|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 455677999999999999999999999999999999997 589999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
++++....
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99987654
No 120
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=130.55 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCC-eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC-CeecCeEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGA-IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG-QVLLGRELT 114 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g-~~i~g~~l~ 114 (253)
.....++|||+|||+++++++|+++|.+||. |..+.|. .+|||||+|.+.++|++||+.||+ ..|+|+.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4456789999999999999999999999999 5555553 368999999999999999999999 999999999
Q ss_pred EEEcccCCC
Q 025401 115 VVFAEENRK 123 (253)
Q Consensus 115 V~~a~~~~~ 123 (253)
|+++++...
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999986644
No 121
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.80 E-value=2.5e-20 Score=144.47 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||+++|+++|+++|.+|| |+.|.|+.++. +.++|||||+|++.++|++|| .||+..|+|+.|.|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3456678999999999999999999999999 77999999875 899999999999999999999 68999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
.++.....
T Consensus 118 ~~a~~~~~ 125 (139)
T 2hgn_A 118 FLNSTTGA 125 (139)
T ss_dssp EECCCSCC
T ss_pred EECCCCCC
Confidence 99886654
No 122
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=136.75 Aligned_cols=83 Identities=20% Similarity=0.340 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIR----RPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE 112 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 112 (253)
+..+.++|||+|||+.+++++|+ ++|++||.|+.|.|.. ++.++|||||+|.+.++|+.||..|||..|.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34567899999999999999876 6999999999988853 5678999999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 025401 113 LTVVFAEENR 122 (253)
Q Consensus 113 l~V~~a~~~~ 122 (253)
|.|.||+...
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998653
No 123
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-18 Score=126.64 Aligned_cols=80 Identities=30% Similarity=0.467 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccc--CCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQF--GAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGREL 113 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 113 (253)
......++|||+|||+.+++++|+++|.+| |.|..|.++ ++||||+|.+.++|++||+.||+..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 999999875 5799999999999999999999999999999
Q ss_pred EEEEcccCCC
Q 025401 114 TVVFAEENRK 123 (253)
Q Consensus 114 ~V~~a~~~~~ 123 (253)
.|.++++...
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999986543
No 124
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=133.28 Aligned_cols=80 Identities=23% Similarity=0.354 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...++|||+|||+++++++|+++|..| .|+.|.|+.+.. +.++|||||+|.+.++|++|| .||+..|+|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 445799999999999999999999999 899999999864 889999999999999999999 59999999999999988
Q ss_pred ccC
Q 025401 119 EEN 121 (253)
Q Consensus 119 ~~~ 121 (253)
...
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 653
No 125
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.79 E-value=7.3e-19 Score=127.93 Aligned_cols=78 Identities=29% Similarity=0.552 Sum_probs=71.4
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 36 RGRDLPTSLLVRNLRH-DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
....+.++|||+|||. ++++++|+++|.+||.|..|.|. +|||||+|.+.++|+.||+.|||..|+|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4556788999999998 99999999999999999999984 68999999999999999999999999999999
Q ss_pred EEEcccC
Q 025401 115 VVFAEEN 121 (253)
Q Consensus 115 V~~a~~~ 121 (253)
|++++..
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998754
No 126
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=131.97 Aligned_cols=76 Identities=29% Similarity=0.659 Sum_probs=72.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||+.||+..|+|+.|.|++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 5899999999999999999999999999999999999876
Q ss_pred C
Q 025401 122 R 122 (253)
Q Consensus 122 ~ 122 (253)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 127
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-19 Score=132.51 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC--CCeecCeEEE
Q 025401 38 RDLPTSLLVRNLRHD-CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD--GQVLLGRELT 114 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~--g~~i~g~~l~ 114 (253)
..+.++|||+|||++ +++++|+++|.+||.|..|.|+.. +|||||+|++.++|+.||+.|+ +..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 999999999999999999999754 6999999999999999999886 4569999999
Q ss_pred EEEcccCCC
Q 025401 115 VVFAEENRK 123 (253)
Q Consensus 115 V~~a~~~~~ 123 (253)
|+||+....
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999986543
No 128
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-19 Score=134.76 Aligned_cols=78 Identities=24% Similarity=0.361 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
..++|||+|||+.+++++|+++|.+||.|..|.|+.. ++||||+|.+.++|+.||+.|||..|+|+.|.|+||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4579999999999999999999999999999998753 6899999999999999999999999999999999998
Q ss_pred cCCC
Q 025401 120 ENRK 123 (253)
Q Consensus 120 ~~~~ 123 (253)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6544
No 129
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2e-19 Score=131.57 Aligned_cols=77 Identities=23% Similarity=0.307 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....++|||+|||.++++++|+++|.+||.|..|.|+. .+|||||+|.+.++|+.||..||+..|+|+.|.|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34568999999999999999999999999999999974 379999999999999999999999999999999999
Q ss_pred ccc
Q 025401 118 AEE 120 (253)
Q Consensus 118 a~~ 120 (253)
+++
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 875
No 130
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=5.4e-19 Score=146.31 Aligned_cols=86 Identities=23% Similarity=0.398 Sum_probs=77.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+..+.++|||+|||+++++++|+++|++||+|+.|.|+.+..++.++|||||+|.+.++|+.||+.||+..+.|+.|.|
T Consensus 10 ~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 89 (213)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc
Confidence 45566789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEcccC
Q 025401 116 VFAEEN 121 (253)
Q Consensus 116 ~~a~~~ 121 (253)
.++...
T Consensus 90 ~~~~~~ 95 (213)
T 4f02_A 90 MWSQRD 95 (213)
T ss_dssp EECCCC
T ss_pred cccccc
Confidence 987654
No 131
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=3.5e-20 Score=135.61 Aligned_cols=84 Identities=20% Similarity=0.369 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....++|||+|||+++++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ ||+..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999999999999999999999887 556666678889999999999999999999 999999999999999
Q ss_pred cccCCC
Q 025401 118 AEENRK 123 (253)
Q Consensus 118 a~~~~~ 123 (253)
++....
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 986544
No 132
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.79 E-value=2.1e-19 Score=130.29 Aligned_cols=84 Identities=25% Similarity=0.469 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIR----RPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE 112 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 112 (253)
+.++.++|||+|||.++++++|+ ++|.+||.|..|.|+. ++..+|||||+|.+.++|+.||+.|||..|+|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34667899999999999999999 9999999999999873 4556899999999999999999999999999999
Q ss_pred EEEEEcccCCC
Q 025401 113 LTVVFAEENRK 123 (253)
Q Consensus 113 l~V~~a~~~~~ 123 (253)
|.|.|++....
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987543
No 133
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.5e-19 Score=126.89 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....++|||+|||+++++++|+++|.+||.|..| +.+..++. ||||+|.+.++|++||+ ||+..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 34444544 99999999999999999 999999999999998
Q ss_pred cccCCC
Q 025401 118 AEENRK 123 (253)
Q Consensus 118 a~~~~~ 123 (253)
+.....
T Consensus 79 a~~~~~ 84 (94)
T 2e5g_A 79 REQKEF 84 (94)
T ss_dssp SCCSCC
T ss_pred CCcCCC
Confidence 875544
No 134
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.5e-19 Score=129.99 Aligned_cols=79 Identities=27% Similarity=0.470 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 37 GRDLPTSLLVRNLRH-DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
..++.++|||+|||+ .+++++|+++|.+||.|..|.|. +|||||+|.+.++|+.||+.||+..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456788999999998 99999999999999999999985 689999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
++++....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99987654
No 135
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=4.7e-19 Score=132.61 Aligned_cols=83 Identities=27% Similarity=0.439 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
+.++.++|||+|||..+++++|.++|.+||.|..|.|+.+ +..+|||||+|.+.++|+.||+.|||..|+|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4566789999999999999999999999999999999864 4458999999999999999999999999999999999
Q ss_pred EcccCC
Q 025401 117 FAEENR 122 (253)
Q Consensus 117 ~a~~~~ 122 (253)
|+.+..
T Consensus 81 ~a~~~~ 86 (115)
T 3lqv_A 81 YYNANR 86 (115)
T ss_dssp ECCHHH
T ss_pred EecCCh
Confidence 998643
No 136
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6e-19 Score=127.72 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEE-EEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDI-YLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.....++|||+|||+++++++|+++|.+||.|..| .|+.+..+ +.|||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34557899999999999999999999999999999 57776543 44999999999999999999999999999999
Q ss_pred EEcccC
Q 025401 116 VFAEEN 121 (253)
Q Consensus 116 ~~a~~~ 121 (253)
.++.+.
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999876
No 137
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=125.04 Aligned_cols=80 Identities=25% Similarity=0.411 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
....+.++|||+|| ++++++|+++|.+||.|..|.|.. .+|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999996 899999999999999999999853 4789999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
.|+.....
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99987654
No 138
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-19 Score=126.93 Aligned_cols=73 Identities=25% Similarity=0.483 Sum_probs=67.6
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCe-EE
Q 025401 41 PTSLLVRNLRHDC------RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGR-EL 113 (253)
Q Consensus 41 ~~~i~V~nLp~~~------te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~-~l 113 (253)
.++|||+|||..+ ++++|+++|.+||.|..|.|+ ..++.++|||||+|.+.++|+.||+.|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 35788999999999999999999999999999999 88
Q ss_pred EE
Q 025401 114 TV 115 (253)
Q Consensus 114 ~V 115 (253)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 139
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=9.8e-20 Score=134.86 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCC---eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGA---IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE 112 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 112 (253)
.+....++|||+|||+++++++|+++|..||. |..|.|+.+.. +.++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 45567899999999999999999999999998 89999998876 8999999999999999999999 9999999999
Q ss_pred EEEEEcccC
Q 025401 113 LTVVFAEEN 121 (253)
Q Consensus 113 l~V~~a~~~ 121 (253)
|.|.++...
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999998754
No 140
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=1.1e-19 Score=125.58 Aligned_cols=75 Identities=28% Similarity=0.395 Sum_probs=71.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
+|||+|||+++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+ +++..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998889999999999999999999999 5999999999999875
No 141
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=2.8e-19 Score=136.23 Aligned_cols=83 Identities=24% Similarity=0.291 Sum_probs=74.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCee--EEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIK--DIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGREL 113 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 113 (253)
.+....++|||+|||+++|+++|+++|.+| .|+ .|.|+.++. +.++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 445667899999999999999999999999 677 899998876 8999999999999999999999 57899999999
Q ss_pred EEEEcccC
Q 025401 114 TVVFAEEN 121 (253)
Q Consensus 114 ~V~~a~~~ 121 (253)
.|.++...
T Consensus 114 ~V~~a~~~ 121 (126)
T 2hgm_A 114 EVFKSSQE 121 (126)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99988643
No 142
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-19 Score=129.26 Aligned_cols=83 Identities=20% Similarity=0.411 Sum_probs=73.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||..+++++|+++|.+||.|..| ..++.++|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999988766 236778999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
.++.+...
T Consensus 86 ~~a~~~~~ 93 (96)
T 1fjc_A 86 YYTGEKGG 93 (96)
T ss_dssp EECSSSCC
T ss_pred EEcCCCCC
Confidence 99986543
No 143
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.8e-19 Score=140.19 Aligned_cols=89 Identities=25% Similarity=0.396 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEE--Eccc---CCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCe
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIY--LPRD---YYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~--i~~~---~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 111 (253)
+..+.++|||+|||+.+++++|+++|.+||.|..|. ++.+ ..++.++|||||+|.+.++|+.||..|||..|.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 356678999999999999999999999999987641 1111 23678899999999999999999999999999999
Q ss_pred EEEEEEcccCCCCC
Q 025401 112 ELTVVFAEENRKKP 125 (253)
Q Consensus 112 ~l~V~~a~~~~~~~ 125 (253)
.|.|.+|+....+.
T Consensus 121 ~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 121 PMVVQFARSARPKQ 134 (143)
T ss_dssp ECEEEECCCSCC--
T ss_pred EEEEEECCCCCCcc
Confidence 99999998765443
No 144
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-20 Score=140.74 Aligned_cols=86 Identities=27% Similarity=0.411 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKD--------IYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
..+.++|||+|||.++++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|++||+.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 889888888999999999999999999999999999999
Q ss_pred CeEEEEEEcccCCC
Q 025401 110 GRELTVVFAEENRK 123 (253)
Q Consensus 110 g~~l~V~~a~~~~~ 123 (253)
|+.|.|.+++....
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999986644
No 145
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=130.19 Aligned_cols=80 Identities=16% Similarity=0.327 Sum_probs=71.8
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee-----cC
Q 025401 38 RDLPTSLLV--RNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL-----LG 110 (253)
Q Consensus 38 ~~~~~~i~V--~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i-----~g 110 (253)
.++..+||| +||++.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.|||.+| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 356788999 779999999999999999999999988643 68999999999999999999999998 68
Q ss_pred eEEEEEEcccCCC
Q 025401 111 RELTVVFAEENRK 123 (253)
Q Consensus 111 ~~l~V~~a~~~~~ 123 (253)
..|.|.|+....+
T Consensus 96 ~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 96 ITLYLNFVEKVQW 108 (114)
T ss_dssp EECEEEEESCCCC
T ss_pred cEEEEEecccCcc
Confidence 8999999986554
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=5.7e-19 Score=129.31 Aligned_cols=83 Identities=20% Similarity=0.446 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....++|||+|||+++++++|+++|.+||.|..|.|+.+. ++..+|||||+|.+.++|++||+ ++..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 89999999999999999999998 99999999999999
Q ss_pred cccCCC
Q 025401 118 AEENRK 123 (253)
Q Consensus 118 a~~~~~ 123 (253)
+.....
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 886543
No 147
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=132.60 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCe----eEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAI----KDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGREL 113 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v----~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 113 (253)
....++|||+|||+++|+++|++||.+||.| ..|.|+.+. ++.++|||||+|.+.++|++||+. |+..|.++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999975 688888884 899999999999999999999995 9999999999
Q ss_pred EEEEcccC
Q 025401 114 TVVFAEEN 121 (253)
Q Consensus 114 ~V~~a~~~ 121 (253)
.|..+...
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99987643
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=4e-18 Score=134.28 Aligned_cols=83 Identities=33% Similarity=0.518 Sum_probs=78.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
.....++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ecc
Q 025401 117 FAE 119 (253)
Q Consensus 117 ~a~ 119 (253)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 149
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=2e-18 Score=123.17 Aligned_cols=76 Identities=17% Similarity=0.371 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
..++|||+|||+++++++|+++|.+| .|..|.|. ..+|||||+|.+.++|+.||+.||+..|+|+.|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999885 358999999999999999999999999999999999987
Q ss_pred cCC
Q 025401 120 ENR 122 (253)
Q Consensus 120 ~~~ 122 (253)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=1.8e-18 Score=135.47 Aligned_cols=82 Identities=29% Similarity=0.652 Sum_probs=75.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 44566789999999999999999999999999999999876 4899999999999999999999999999999999
Q ss_pred EEcccCC
Q 025401 116 VFAEENR 122 (253)
Q Consensus 116 ~~a~~~~ 122 (253)
.|+.+..
T Consensus 143 ~~a~~~~ 149 (150)
T 2i2y_A 143 ELSNGEK 149 (150)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9988653
No 151
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=5.5e-18 Score=129.30 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceE-EEEEEcCHHHHHHHHHhhCCCeecC--eEEEEE
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGF-GFIQFVEPDDAAEAKRHMDGQVLLG--RELTVV 116 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~ 116 (253)
.-..|||+||++.+|+++|.++|++||.|..|.|+... +|| |||+|.+.++|+.||+.|||..|.| +.|.|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 33467899999999999999999999999999887542 677 9999999999999999999999998 999999
Q ss_pred EcccCCC
Q 025401 117 FAEENRK 123 (253)
Q Consensus 117 ~a~~~~~ 123 (253)
|++....
T Consensus 102 ~ak~~~l 108 (130)
T 3zzy_A 102 FSKLTSL 108 (130)
T ss_dssp ECSCSSC
T ss_pred ecCCCce
Confidence 9987643
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=6.3e-18 Score=133.27 Aligned_cols=82 Identities=29% Similarity=0.577 Sum_probs=78.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
.++|||+|||+++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.||+..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CC
Q 025401 121 NR 122 (253)
Q Consensus 121 ~~ 122 (253)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 153
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=128.70 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCC---CCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYS---GEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
....++|||+|||+++++++|+++|.+||.|. +.++.+..+ +.++|||||+|.+.++|++||+.|+ .|+|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 35578999999999999999999999999999 888887766 7899999999999999999999884 47888887
Q ss_pred EEEcccCCC
Q 025401 115 VVFAEENRK 123 (253)
Q Consensus 115 V~~a~~~~~ 123 (253)
|..+.....
T Consensus 82 ~~~~~~~~~ 90 (114)
T 2dnl_A 82 CVSSPTIKD 90 (114)
T ss_dssp EECCSSSCS
T ss_pred eccCCCcCC
Confidence 776554433
No 154
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=5.4e-18 Score=134.05 Aligned_cols=84 Identities=25% Similarity=0.460 Sum_probs=79.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
+.++|||+|||.++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999988889999999999999999999999999999999999999988
Q ss_pred cCCC
Q 025401 120 ENRK 123 (253)
Q Consensus 120 ~~~~ 123 (253)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6543
No 155
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=1.1e-17 Score=126.85 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=68.7
Q ss_pred CCCCe--EEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceE-EEEEEcCHHHHHHHHHhhCCCeecC--eEE
Q 025401 39 DLPTS--LLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGF-GFIQFVEPDDAAEAKRHMDGQVLLG--REL 113 (253)
Q Consensus 39 ~~~~~--i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~Al~~l~g~~i~g--~~l 113 (253)
.+.++ |||+||++.+++++|.++|++||.|..|.|+.. .|| |||+|++.++|+.||+.|||..|.| +.|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 34444 679999999999999999999999999998642 276 9999999999999999999999988 689
Q ss_pred EEEEcccCC
Q 025401 114 TVVFAEENR 122 (253)
Q Consensus 114 ~V~~a~~~~ 122 (253)
.|+||+...
T Consensus 95 ~V~~Ak~~~ 103 (124)
T 2e5i_A 95 KIEYARPTR 103 (124)
T ss_dssp EEECCSCSC
T ss_pred EEEEecCCc
Confidence 999998764
No 156
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.5e-18 Score=128.92 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=72.8
Q ss_pred CCeEEEcCC----CCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHH----HHHHHH--hhCCC
Q 025401 41 PTSLLVRNL----RHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDD----AAEAKR--HMDGQ 106 (253)
Q Consensus 41 ~~~i~V~nL----p~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~----a~~Al~--~l~g~ 106 (253)
++.|||+|| |+.|++++|+++|..||+|..|.++.|+.||.++|||||+|.+ +++ |..||. .|+|.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 588999999 9999999999999999999999999999999999999999996 433 788888 78999
Q ss_pred eecCeEEEEEEccc
Q 025401 107 VLLGRELTVVFAEE 120 (253)
Q Consensus 107 ~i~g~~l~V~~a~~ 120 (253)
.|+|+.|.|.+-..
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998654
No 157
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=8.8e-18 Score=120.27 Aligned_cols=79 Identities=22% Similarity=0.453 Sum_probs=62.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCe--ecCeEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQV--LLGREL 113 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~--i~g~~l 113 (253)
....++++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|++.++|++ |++.. +.|+.|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 45677899999999999999999999999999999999875 58999999999999883 45554 459999
Q ss_pred EEEEcccCCC
Q 025401 114 TVVFAEENRK 123 (253)
Q Consensus 114 ~V~~a~~~~~ 123 (253)
.|.+|.+...
T Consensus 77 ~v~~a~~k~~ 86 (89)
T 3d2w_A 77 HISNAEPKHN 86 (89)
T ss_dssp EEEECC----
T ss_pred EEEEcCCCCc
Confidence 9999886543
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=7.9e-18 Score=138.54 Aligned_cols=85 Identities=29% Similarity=0.425 Sum_probs=80.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...++|||+|||..+++++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45589999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 025401 119 EENRK 123 (253)
Q Consensus 119 ~~~~~ 123 (253)
.....
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87644
No 159
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5e-18 Score=121.29 Aligned_cols=75 Identities=25% Similarity=0.452 Sum_probs=66.4
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHhccc-CCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE
Q 025401 39 DLPTS-LLVRNLRHDCRPED----IRRPFEQF-GAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE 112 (253)
Q Consensus 39 ~~~~~-i~V~nLp~~~te~~----L~~~F~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 112 (253)
++..| |||+|||+.+++++ |.++|.+| |+|..| ++ |+|||+|.+.++|+.||+.|||..|.|+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34455 99999999999988 55899999 599888 22 89999999999999999999999999999
Q ss_pred EEEEEcccCCC
Q 025401 113 LTVVFAEENRK 123 (253)
Q Consensus 113 l~V~~a~~~~~ 123 (253)
|.|.||+....
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999997654
No 160
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.74 E-value=6e-18 Score=133.84 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC--eEEEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG--RELTVV 116 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g--~~l~V~ 116 (253)
..-.+|||+||++.+++++|+++|++||+|+.|.|+.. ..++||||+|++.++|+.||+.|||..|.| +.|.|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 33456899999999999999999999999999998643 247899999999999999999999999976 999999
Q ss_pred EcccCC
Q 025401 117 FAEENR 122 (253)
Q Consensus 117 ~a~~~~ 122 (253)
|++...
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998764
No 161
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=1.3e-17 Score=135.48 Aligned_cols=86 Identities=22% Similarity=0.383 Sum_probs=81.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 46678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccCCC
Q 025401 118 AEENRK 123 (253)
Q Consensus 118 a~~~~~ 123 (253)
+.+...
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987643
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.73 E-value=1.1e-17 Score=132.89 Aligned_cols=81 Identities=21% Similarity=0.374 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|+|+.|.|.||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44789999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred c
Q 025401 119 E 119 (253)
Q Consensus 119 ~ 119 (253)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 163
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.73 E-value=9.6e-18 Score=118.94 Aligned_cols=73 Identities=22% Similarity=0.408 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccc----C-------CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQF----G-------AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
..+.++|||+|||+++++++|+++|.+| | .|..|.++.+ +|||||+|.+.++|++|| .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3567899999999999999999999999 8 8999999865 799999999999999999 89999
Q ss_pred eecCeEEEEEE
Q 025401 107 VLLGRELTVVF 117 (253)
Q Consensus 107 ~i~g~~l~V~~ 117 (253)
.|+|+.|.|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999873
No 164
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=1.9e-17 Score=136.56 Aligned_cols=78 Identities=13% Similarity=0.307 Sum_probs=72.6
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 40 LPTSLLVRNLR-HDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 40 ~~~~i~V~nLp-~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
+.++|||+||| ..+++++|.++|.+||.|..|.|+.+. +|||||+|.+.++|+.||+.|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 899999999999999999999998753 799999999999999999999999999999999999
Q ss_pred ccCC
Q 025401 119 EENR 122 (253)
Q Consensus 119 ~~~~ 122 (253)
+...
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 165
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=1.9e-17 Score=134.29 Aligned_cols=85 Identities=24% Similarity=0.397 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
.....++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+. ++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 445678999999999999999999999999999999999988899999999999999999999985 9999999999999
Q ss_pred EcccCC
Q 025401 117 FAEENR 122 (253)
Q Consensus 117 ~a~~~~ 122 (253)
++....
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 987553
No 166
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=1.4e-17 Score=125.99 Aligned_cols=80 Identities=25% Similarity=0.411 Sum_probs=71.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
.+..+.++|||+|| ++++++|+++|.+||.|..|.|.. .+|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34466789999996 699999999999999999999863 4799999999999999999999999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
.|+.....
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987643
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=1.9e-17 Score=136.93 Aligned_cols=81 Identities=22% Similarity=0.390 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
..++|||+|||+.+++++|+++|.+||.|+.|.|+.+. +..+|||||+|.+.++|++||+.|||..|+|+.|.|.+|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35689999999999999999999999999999998874 4468999999999999999999999999999999999998
Q ss_pred cCC
Q 025401 120 ENR 122 (253)
Q Consensus 120 ~~~ 122 (253)
+..
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 643
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=2.9e-17 Score=133.17 Aligned_cols=85 Identities=25% Similarity=0.364 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...++|||+|||+.+++++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||.. ++..|+|+.|.|.+|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 4568999999999999999999999999999999999988899999999999999999999995 899999999999999
Q ss_pred ccCCCC
Q 025401 119 EENRKK 124 (253)
Q Consensus 119 ~~~~~~ 124 (253)
.+....
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 876543
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.72 E-value=1e-17 Score=132.38 Aligned_cols=81 Identities=26% Similarity=0.414 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+ |++..|+|+.|.|.+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999998889999999999999999999998 89999999999999997
Q ss_pred cC
Q 025401 120 EN 121 (253)
Q Consensus 120 ~~ 121 (253)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=2.5e-17 Score=135.53 Aligned_cols=83 Identities=25% Similarity=0.433 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...++|||+|||.++++++|+++|.+||.|..|.|+.+..++..+|||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 44689999999999999999999999999999999999888999999999999999999999999999999999999887
Q ss_pred ccC
Q 025401 119 EEN 121 (253)
Q Consensus 119 ~~~ 121 (253)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 644
No 171
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=4.8e-17 Score=128.57 Aligned_cols=81 Identities=27% Similarity=0.473 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC--eEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG--RELTV 115 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g--~~l~V 115 (253)
....++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.| ..|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3456899999999999999999999999999999999988889999999999999999999999999999988 99999
Q ss_pred EEc
Q 025401 116 VFA 118 (253)
Q Consensus 116 ~~a 118 (253)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 172
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=118.32 Aligned_cols=78 Identities=21% Similarity=0.431 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...++|||+|||+++++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45689999999999999999999999999999999865 589999999999999865432 34668999999998
Q ss_pred ccCCC
Q 025401 119 EENRK 123 (253)
Q Consensus 119 ~~~~~ 123 (253)
.+...
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86544
No 173
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.71 E-value=9e-17 Score=118.58 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhcccCCeeEEEEcccCCC-CCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE
Q 025401 39 DLPTSLLVRNLRH-----DCRPEDIRRPFEQFGAIKDIYLPRDYYS-GEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE 112 (253)
Q Consensus 39 ~~~~~i~V~nLp~-----~~te~~L~~~F~~~G~v~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 112 (253)
.+..+|+|.||.. +.++++|+++|++||.|+.|.|+.++.+ +.++|||||+|.+.++|++|++.|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 2378999999999999999999887544 678999999999999999999999999999999
Q ss_pred EEEEEcccC
Q 025401 113 LTVVFAEEN 121 (253)
Q Consensus 113 l~V~~a~~~ 121 (253)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998754
No 174
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=6.5e-17 Score=127.27 Aligned_cols=81 Identities=19% Similarity=0.330 Sum_probs=74.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
.+|||+|||.++++++|+++|++||.|..|.|+.+. ++..+|||||+|.+.++|+.||+.||+..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999886 4678999999999999999999999999999999999998765
Q ss_pred CC
Q 025401 122 RK 123 (253)
Q Consensus 122 ~~ 123 (253)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=8.4e-17 Score=126.76 Aligned_cols=80 Identities=31% Similarity=0.456 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE--EEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE--LTVV 116 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~--l~V~ 116 (253)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 45688999999999999999999999999999999998888999999999999999999999999999999964 8888
Q ss_pred Ec
Q 025401 117 FA 118 (253)
Q Consensus 117 ~a 118 (253)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 176
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.69 E-value=3.7e-17 Score=137.27 Aligned_cols=82 Identities=28% Similarity=0.357 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEcCCCCCC---------CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 36 RGRDLPTSLLVRNLRHDC---------RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~---------te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
......++|||+||+..+ ++++|.++|.+||+|+.|.|+.+ +|||||+|.+.++|+.||+.|+|.
T Consensus 129 s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 129 SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp --CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 445678899999999998 79999999999999999999865 799999999999999999999999
Q ss_pred ee------------cCeEEEEEEcccCCC
Q 025401 107 VL------------LGRELTVVFAEENRK 123 (253)
Q Consensus 107 ~i------------~g~~l~V~~a~~~~~ 123 (253)
.| .|..|.|.||+....
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 99 899999999987644
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=1.3e-16 Score=126.74 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec---CeEEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL---GRELTV 115 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~---g~~l~V 115 (253)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|||..|. ++.|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 456899999999999999999999999999999998885 6888999999999999999999999998777 389999
Q ss_pred EEcc
Q 025401 116 VFAE 119 (253)
Q Consensus 116 ~~a~ 119 (253)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=2e-16 Score=135.74 Aligned_cols=83 Identities=27% Similarity=0.478 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIR----RPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE 112 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 112 (253)
+..+.++|||+|||+++++++|+ ++|.+||.|+.|.|+. ++..+|||||+|.+.++|+.||+.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45678899999999999999966 8999999999999875 6778999999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 025401 113 LTVVFAEENR 122 (253)
Q Consensus 113 l~V~~a~~~~ 122 (253)
|.|.|++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997654
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=1.3e-16 Score=126.74 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCC--CCceEEEEEEcCHHHHHHHHHhhCCCeec---CeEEE
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSG--EPRGFGFIQFVEPDDAAEAKRHMDGQVLL---GRELT 114 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~Al~~l~g~~i~---g~~l~ 114 (253)
..++|||+|||+++++++|+++|.+||.|..|.|+.+..++ .++|||||+|.+.++|+.||+.||+..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999988776 78999999999999999999999998876 67888
Q ss_pred EEEcccCCC
Q 025401 115 VVFAEENRK 123 (253)
Q Consensus 115 V~~a~~~~~ 123 (253)
|.++.....
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888776543
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=2.8e-16 Score=128.32 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEccc
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEE 120 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~ 120 (253)
.++|||+|||+++++++|+++|.+||.|..|.|+.+. ++.++|||||+|++.++|+.||+.+ +..|+|+.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4789999999999999999999999999999998875 5888999999999999999999865 5699999999998775
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=1.6e-16 Score=126.61 Aligned_cols=79 Identities=22% Similarity=0.434 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
....++|||+|||..+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|++||+.|||..|+|+.|.|.|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3456899999999999999999999999988766 35778899999999999999999999999999999999999
Q ss_pred cccC
Q 025401 118 AEEN 121 (253)
Q Consensus 118 a~~~ 121 (253)
|.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9754
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=1.5e-16 Score=132.99 Aligned_cols=82 Identities=18% Similarity=0.351 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 36 RGRDLPTSLLVRNLRH-DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
.+..+.++|||+|||+ ++++++|+++|++||.|..|.|+.+. +|||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4446678999999999 99999999999999999999998774 78999999999999999999999999999999
Q ss_pred EEEcccCC
Q 025401 115 VVFAEENR 122 (253)
Q Consensus 115 V~~a~~~~ 122 (253)
|.++....
T Consensus 104 v~~a~~~~ 111 (229)
T 2adc_A 104 ITLSKHQN 111 (229)
T ss_dssp EECCSCCC
T ss_pred EEEecCcc
Confidence 99998653
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=1.4e-16 Score=125.78 Aligned_cols=79 Identities=24% Similarity=0.512 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
+.++|||+|||+++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|+.||+. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 457999999999999999999999999999999999988999999999999999999999984 578999999998876
Q ss_pred c
Q 025401 120 E 120 (253)
Q Consensus 120 ~ 120 (253)
.
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 184
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9e-16 Score=114.33 Aligned_cols=81 Identities=25% Similarity=0.460 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 38 RDLPTSLLVRNLRHDCR-----------PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~t-----------e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
..+..+|+|.||..... +++|+++|.+||.|..|.| .+. .++|||||+|.+.++|++||+.|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34678899999954432 5799999999999999966 332 36899999999999999999999999
Q ss_pred eecCeEEEEEEcccCC
Q 025401 107 VLLGRELTVVFAEENR 122 (253)
Q Consensus 107 ~i~g~~l~V~~a~~~~ 122 (253)
.|+|+.|.|.++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999987653
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=1.3e-15 Score=130.76 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec-CeEEEEE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL-GRELTVV 116 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g~~l~V~ 116 (253)
..+.++|||+|||..+++++|+++|.+||.|+.|.|+.+. +|||||+|.+.++|++||+.|||..|. |+.|.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3456889999999999999999999999999999998653 589999999999999999999999999 9999999
Q ss_pred Ecc
Q 025401 117 FAE 119 (253)
Q Consensus 117 ~a~ 119 (253)
|++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.65 E-value=4.1e-16 Score=134.49 Aligned_cols=84 Identities=26% Similarity=0.417 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEcccCC-CCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEE
Q 025401 37 GRDLPTSLLVRNLRHD-CRPEDIRRPFEQFGAIKDIYLPRDYY-SGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELT 114 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 114 (253)
.....++|||+|||.. +++++|+++|.+||.|..|.|+.+.. |+.++|||||+|.+.++|++|| .|||..|+|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 99999999999999999999998765 5889999999999999999999 9999999999999
Q ss_pred EEEcccC
Q 025401 115 VVFAEEN 121 (253)
Q Consensus 115 V~~a~~~ 121 (253)
|.||+++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999864
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.64 E-value=1.3e-15 Score=130.88 Aligned_cols=85 Identities=25% Similarity=0.421 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
...++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|++..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34579999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 025401 119 EENRK 123 (253)
Q Consensus 119 ~~~~~ 123 (253)
.....
T Consensus 173 ~~~~~ 177 (284)
T 3smz_A 173 DAGQL 177 (284)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 86543
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=1.2e-15 Score=131.05 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCC-CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 38 RDLPTSLLVRNLRHDC-RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~-te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
....++|||+|||..+ ++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3567899999999995 999999999999999999998876 78889999999999999999999999999999999999
Q ss_pred EcccCCC
Q 025401 117 FAEENRK 123 (253)
Q Consensus 117 ~a~~~~~ 123 (253)
|+.+...
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9987654
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=2e-16 Score=126.11 Aligned_cols=86 Identities=20% Similarity=0.361 Sum_probs=74.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 36 RGRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 36 ~~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
......++|||+|||.++++++|+++|.+||.|.. .++.+..++..+|||||+|.+.++|++||+ ||+..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 45677899999999999999999999999998766 233444567789999999999999999995 9999999999999
Q ss_pred EEcccCCC
Q 025401 116 VFAEENRK 123 (253)
Q Consensus 116 ~~a~~~~~ 123 (253)
.++.....
T Consensus 86 ~~~~~~~~ 93 (175)
T 1fje_B 86 EKPKGRDS 93 (175)
T ss_dssp ECCCCSSC
T ss_pred ecCCCccc
Confidence 99886543
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=4.9e-16 Score=126.46 Aligned_cols=77 Identities=19% Similarity=0.405 Sum_probs=72.3
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 41 PTSLLVRNLRH-DCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 41 ~~~i~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
.++|||+|||+ .+++++|+++|.+||.|..|.|+.+. +|||||+|.+.++|+.||+.||+..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998774 7899999999999999999999999999999999988
Q ss_pred cCC
Q 025401 120 ENR 122 (253)
Q Consensus 120 ~~~ 122 (253)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=8.6e-16 Score=126.54 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCe--eEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCe----E
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAI--KDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGR----E 112 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~----~ 112 (253)
.+.++|||+|||+.+++++|+++|++||.| +.|.|+.+. +..+|||||+|.+.++|++||..|||.+|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456899999999999999999999999999 889888764 45569999999999999999999999999986 5
Q ss_pred EEEEEc
Q 025401 113 LTVVFA 118 (253)
Q Consensus 113 l~V~~a 118 (253)
|.|.||
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777665
No 192
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=2.2e-15 Score=111.07 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=70.8
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHhcccCCeeEEEEcccCCC--CCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 39 DLPTSLLVRNL--RHDCR--------PEDIRRPFEQFGAIKDIYLPRDYYS--GEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 39 ~~~~~i~V~nL--p~~~t--------e~~L~~~F~~~G~v~~v~i~~~~~~--g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
.+..+|+|.|+ +..+. +++|+++|++||.|+.|.|+.+..+ +..+|||||+|.+.++|++||+.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678999998 33332 3689999999999999999887654 357899999999999999999999999
Q ss_pred eecCeEEEEEEcccC
Q 025401 107 VLLGRELTVVFAEEN 121 (253)
Q Consensus 107 ~i~g~~l~V~~a~~~ 121 (253)
.|+|+.|.|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998654
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=1.8e-15 Score=126.44 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec-CeEEEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL-GRELTVV 116 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g~~l~V~ 116 (253)
.+.++|||+|||..+++++|+++|.+|| .|..|.|+.. .+|||||+|.+.++|++||+.|||..|. |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999999653 2689999999999999999999999999 9999999
Q ss_pred EcccC
Q 025401 117 FAEEN 121 (253)
Q Consensus 117 ~a~~~ 121 (253)
|+++.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99854
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=1e-15 Score=124.62 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec-CeEEEEE
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL-GRELTVV 116 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g~~l~V~ 116 (253)
.+.++|||+|||..+++++|+++|.+|| .|..|.|+.+. +|||||+|.+.++|++||..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 99999997542 789999999999999999999999999 9999999
Q ss_pred EcccC
Q 025401 117 FAEEN 121 (253)
Q Consensus 117 ~a~~~ 121 (253)
|+++.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98754
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=1.9e-15 Score=128.73 Aligned_cols=78 Identities=37% Similarity=0.624 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
.....++|||+|||+++|+++|.++|.+||.|..|.|..+ +|||||+|.+.++|+.||..|||..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3355679999999999999999999999999999999755 6999999999999999999999999999999999
Q ss_pred Eccc
Q 025401 117 FAEE 120 (253)
Q Consensus 117 ~a~~ 120 (253)
++..
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9875
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.58 E-value=5e-15 Score=117.41 Aligned_cols=76 Identities=21% Similarity=0.416 Sum_probs=68.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccc----C-------CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQF----G-------AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL 108 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 108 (253)
+.++|||+|||+++++++|+++|.+| | .|..+.+..+ +|||||+|.+.++|+.|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45799999999999999999999999 6 7777777654 799999999999999999 7999999
Q ss_pred cCeEEEEEEcccCC
Q 025401 109 LGRELTVVFAEENR 122 (253)
Q Consensus 109 ~g~~l~V~~a~~~~ 122 (253)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999876543
No 197
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.58 E-value=4.6e-15 Score=111.59 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCC-----CCHHHHHHHhcccCCeeEEEEcccCC----CCCCceEEEEEEcCHHHHHHHHHhhCCCeecC
Q 025401 40 LPTSLLVRNLRHD-----CRPEDIRRPFEQFGAIKDIYLPRDYY----SGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG 110 (253)
Q Consensus 40 ~~~~i~V~nLp~~-----~te~~L~~~F~~~G~v~~v~i~~~~~----~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 110 (253)
+..+|+|.||-.. -.+++|+++|++||.|+.|.|+.+.. ++..+|||||+|.+.++|++||+.|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5778999998421 23689999999999999999988754 34567999999999999999999999999999
Q ss_pred eEEEEEEcccC
Q 025401 111 RELTVVFAEEN 121 (253)
Q Consensus 111 ~~l~V~~a~~~ 121 (253)
+.|.|.|+...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998753
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=8.9e-16 Score=113.01 Aligned_cols=72 Identities=14% Similarity=0.362 Sum_probs=63.0
Q ss_pred EcCCCCCCCHHHHHHHh------------cccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEE
Q 025401 46 VRNLRHDCRPEDIRRPF------------EQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGREL 113 (253)
Q Consensus 46 V~nLp~~~te~~L~~~F------------~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 113 (253)
+.||++.+++++|+++| ++||.|+.|.|+.+. ++.++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666677777777666 999999999999875 47889999999999999999999999999999999
Q ss_pred EEEEc
Q 025401 114 TVVFA 118 (253)
Q Consensus 114 ~V~~a 118 (253)
.|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=6.7e-15 Score=119.29 Aligned_cols=76 Identities=20% Similarity=0.414 Sum_probs=66.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccc----C-------CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQF----G-------AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL 108 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 108 (253)
..++|||+|||+.+++++|+++|.+| | .|..+.+.. .+|||||+|.+.++|++|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~------~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET------TTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC------CCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 566666643 3799999999999999999 7999999
Q ss_pred cCeEEEEEEcccCC
Q 025401 109 LGRELTVVFAEENR 122 (253)
Q Consensus 109 ~g~~l~V~~a~~~~ 122 (253)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999987654
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=5.1e-15 Score=127.59 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEc
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFA 118 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a 118 (253)
..++|||+|||+.+++++|.++|.+|| .|..|.|+.+.. +..+|||||+|.+.++|+.||..|||..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999988764 778999999999999999999999999999999999998
Q ss_pred ccCCC
Q 025401 119 EENRK 123 (253)
Q Consensus 119 ~~~~~ 123 (253)
.+...
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 86544
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=7.6e-15 Score=124.99 Aligned_cols=82 Identities=28% Similarity=0.388 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC-CCeec---CeEEEE
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD-GQVLL---GRELTV 115 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~-g~~i~---g~~l~V 115 (253)
..++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|+.||..|| +..+. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999988 588899999999999999999999995 45554 999999
Q ss_pred EEcccCC
Q 025401 116 VFAEENR 122 (253)
Q Consensus 116 ~~a~~~~ 122 (253)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9988653
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.2e-14 Score=102.69 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=63.9
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEE
Q 025401 41 PTSLLVRNLR-------HDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGREL 113 (253)
Q Consensus 41 ~~~i~V~nLp-------~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 113 (253)
..+|.|.-.. ..+++++|+++|.+||.|+.|.|+. ..+|||||+|++.++|+.||+.+++ +.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4566665443 4589999999999999999999973 4689999999999999999997544 679999
Q ss_pred EEEEcccCCCC
Q 025401 114 TVVFAEENRKK 124 (253)
Q Consensus 114 ~V~~a~~~~~~ 124 (253)
.|.|++.....
T Consensus 83 ~V~~a~~~~~~ 93 (100)
T 2d9o_A 83 KISWLEGQPQD 93 (100)
T ss_dssp EEECSSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99998876543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.54 E-value=1.7e-14 Score=127.22 Aligned_cols=78 Identities=19% Similarity=0.400 Sum_probs=67.1
Q ss_pred CCCCCCCeEEEcC--CCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec---C
Q 025401 36 RGRDLPTSLLVRN--LRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL---G 110 (253)
Q Consensus 36 ~~~~~~~~i~V~n--Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~---g 110 (253)
....+..+|||+| |++.+++++|+++|++||+|..|.|+. .+|||||+|.+.++|++||+.|||.++. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3456778999999 578999999999999999999988764 3799999999999999999999999884 3
Q ss_pred e--EEEEEEcc
Q 025401 111 R--ELTVVFAE 119 (253)
Q Consensus 111 ~--~l~V~~a~ 119 (253)
. .|.|.|+.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 4 57777774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.50 E-value=1.4e-13 Score=102.84 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCCC----------HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCe
Q 025401 38 RDLPTSLLVRNLRHDCR----------PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQV 107 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~t----------e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 107 (253)
..+..+|.|.|+-.... +++|+++|++||.|+.|.|..+. .+|||||+|.+.++|++||+.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567788888843221 35789999999999999997653 48999999999999999999999999
Q ss_pred ecCeEEEEEEcccC
Q 025401 108 LLGRELTVVFAEEN 121 (253)
Q Consensus 108 i~g~~l~V~~a~~~ 121 (253)
|+|+.|.|.|+...
T Consensus 80 f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 80 FAGKMITAAYVPLP 93 (114)
T ss_dssp ETTEECEEEEECHH
T ss_pred ECCEEEEEEEEcHH
Confidence 99999999998643
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=7.6e-13 Score=99.33 Aligned_cols=80 Identities=25% Similarity=0.244 Sum_probs=71.1
Q ss_pred CCCCCCCCCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC-HHHHHHHHHhhC--CCeec
Q 025401 34 GGRGRDLPTSLLVRNLRHD-CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE-PDDAAEAKRHMD--GQVLL 109 (253)
Q Consensus 34 ~~~~~~~~~~i~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Al~~l~--g~~i~ 109 (253)
++-.-.+++.|||+||+.. +++++|+++|.+||+|.+|.|+.+. ..|||+|.+ .++|+.||..|| +.+|.
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 3456688999999999999 9999999999999999999998874 369999999 899999999994 77899
Q ss_pred CeEEEEEEcc
Q 025401 110 GRELTVVFAE 119 (253)
Q Consensus 110 g~~l~V~~a~ 119 (253)
|..+.|++..
T Consensus 85 g~~~~~evL~ 94 (121)
T 1owx_A 85 NKEVTWEVLE 94 (121)
T ss_dssp SSSEEEEECC
T ss_pred CcEEEEEECC
Confidence 9999988755
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=3.3e-12 Score=90.35 Aligned_cols=75 Identities=20% Similarity=0.353 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC
Q 025401 39 DLPTSLLVRNLR----HDCRP----EDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG 110 (253)
Q Consensus 39 ~~~~~i~V~nLp----~~~te----~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 110 (253)
++..||+|..++ .++.. .+|.+.|.+||+|..+.|+.+. +||+|.+.++|.+||+ |||..|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 344578887666 23333 5789999999999999998763 8999999999999999 99999999
Q ss_pred eEEEEEEcccCC
Q 025401 111 RELTVVFAEENR 122 (253)
Q Consensus 111 ~~l~V~~a~~~~ 122 (253)
+.|+|+++++.-
T Consensus 76 r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 RTITIALKSPSG 87 (91)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEeCCCCc
Confidence 999999988654
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2.6e-11 Score=86.18 Aligned_cols=72 Identities=15% Similarity=0.280 Sum_probs=60.6
Q ss_pred CCCCeEEEcCCCCC-----CCH----HHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 39 DLPTSLLVRNLRHD-----CRP----EDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 39 ~~~~~i~V~nLp~~-----~te----~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
++..||+|..++.. +.. .+|.+.|.+||+|..+.|+.+. +||+|.+.++|.+||+ |||.+|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 44568989887642 222 4689999999999999999773 9999999999999999 9999999
Q ss_pred CeEEEEEEcc
Q 025401 110 GRELTVVFAE 119 (253)
Q Consensus 110 g~~l~V~~a~ 119 (253)
|+.|+|.+..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999999754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.06 E-value=3.7e-10 Score=93.46 Aligned_cols=69 Identities=14% Similarity=0.272 Sum_probs=60.9
Q ss_pred CCHHHHHHHhcccCCeeEEEEcccC----CCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcccC
Q 025401 53 CRPEDIRRPFEQFGAIKDIYLPRDY----YSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAEEN 121 (253)
Q Consensus 53 ~te~~L~~~F~~~G~v~~v~i~~~~----~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~~~ 121 (253)
-.+++|.+.|.+||.|..|.|+.+. .++..+|++||+|.+.++|++||+.|||..|+|+.|.|.++...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 3467899999999999999998543 34578999999999999999999999999999999999998754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.6e-09 Score=77.40 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccc-----CCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCe
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQF-----GAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~-----G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 111 (253)
+.+...+|-|-|||..|++..|..|++++ |.|+.|.+..+ .+-|+|+|.+...|.+|.-.|+|.+|.|+
T Consensus 17 ~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 17 SKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred CccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCe
Confidence 34567889999999999999999999999 99999999887 36799999999999999988999999999
Q ss_pred EEEEEEc
Q 025401 112 ELTVVFA 118 (253)
Q Consensus 112 ~l~V~~a 118 (253)
+|.|.-.
T Consensus 91 ~Lr~gTv 97 (117)
T 2l9w_A 91 VIRSGTI 97 (117)
T ss_dssp EEEEECH
T ss_pred EEEecCH
Confidence 9998643
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.63 E-value=9.6e-08 Score=68.89 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCCCCCC-C----HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE
Q 025401 38 RDLPTSLLVRNLRHDC-R----PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE 112 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~-t----e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 112 (253)
.+.+++|+|+||+..| . .+.|+++|..|+++....+...- .-..|.|.++++|.+|-..||+..|+|+.
T Consensus 2 s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~ 75 (104)
T 1wey_A 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKE 75 (104)
T ss_dssp CSCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEE
T ss_pred CCCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCce
Confidence 3568999999998865 2 25789999999998887776552 35799999999999999999999999999
Q ss_pred EEEEEcccCC
Q 025401 113 LTVVFAEENR 122 (253)
Q Consensus 113 l~V~~a~~~~ 122 (253)
|+|.++....
T Consensus 76 ~r~YFgq~~~ 85 (104)
T 1wey_A 76 MKLYFAQTLH 85 (104)
T ss_dssp CEEECCCCSS
T ss_pred eEEEecCCCC
Confidence 9999998543
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=7.9e-06 Score=58.64 Aligned_cols=75 Identities=23% Similarity=0.188 Sum_probs=61.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcc-----cCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeE
Q 025401 38 RDLPTSLLVRNLRHDCRPEDIRRPFEQ-----FGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRE 112 (253)
Q Consensus 38 ~~~~~~i~V~nLp~~~te~~L~~~F~~-----~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 112 (253)
....++|.|.|||..+.++.|+-+|++ -|+|+.|.... +-|+|+|.+.+.|+..|+. ..+.|.+..
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 345689999999999999999999987 25888887753 4699999999999999983 478899999
Q ss_pred EEEEEcccC
Q 025401 113 LTVVFAEEN 121 (253)
Q Consensus 113 l~V~~a~~~ 121 (253)
|.|....+.
T Consensus 76 LsV~P~~~~ 84 (104)
T 2dhx_A 76 LSLRPAPPR 84 (104)
T ss_dssp CEEEECCCC
T ss_pred EEEEcCCCC
Confidence 999765543
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.30 E-value=6.8e-06 Score=58.14 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=64.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCC--CCceEEEEEEcCHHHHHHHHHhhCCCeecCe-----EEE
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSG--EPRGFGFIQFVEPDDAAEAKRHMDGQVLLGR-----ELT 114 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~-----~l~ 114 (253)
++|.|.+||+.+||+++.+.+..+..+....++..+.+. ....-|||.|.+.+++....+.++|..|.+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 579999999999999999999999888877776554332 2346899999999999999999999977642 345
Q ss_pred EEEcccC
Q 025401 115 VVFAEEN 121 (253)
Q Consensus 115 V~~a~~~ 121 (253)
|++|..+
T Consensus 82 VE~AP~q 88 (91)
T 1uw4_A 82 VEFAPFQ 88 (91)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 7776644
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.20 E-value=7.5e-06 Score=60.59 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=60.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecC-eEEEE
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLG-RELTV 115 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g-~~l~V 115 (253)
+....+.|.|.++|+.. ...|..+|++||+|++..... ...+..|.|++..+|++||. .||..|++ ..|-|
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 34457789999999885 577888999999999887732 24689999999999999999 69999985 66667
Q ss_pred EEcc
Q 025401 116 VFAE 119 (253)
Q Consensus 116 ~~a~ 119 (253)
....
T Consensus 92 ~p~~ 95 (119)
T 1wwh_A 92 KPCI 95 (119)
T ss_dssp EECC
T ss_pred EECC
Confidence 6643
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.98 E-value=2.7e-05 Score=55.26 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=45.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
...++| ++|.++...||.++|..||.| .|.++.+ ..|||.|.+.+.|..||..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 456666 999999999999999999954 4566555 37999999999999999866
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.91 E-value=2.9e-05 Score=55.26 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=60.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCC--CceEEEEEEcCHHHHHHHHHhhCCCeecCe-----E
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGE--PRGFGFIQFVEPDDAAEAKRHMDGQVLLGR-----E 112 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~--~~g~afV~f~~~~~a~~Al~~l~g~~i~g~-----~ 112 (253)
-.-+|.|..||+.+||+++.+.+..+-++....++..+.+.. ...-|||.|.+.+++....+.++|..|.+. .
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 345799999999999999988888766655444443332221 235689999999999999999999977643 4
Q ss_pred EEEEEccc
Q 025401 113 LTVVFAEE 120 (253)
Q Consensus 113 l~V~~a~~ 120 (253)
..|++|..
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 55777654
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.75 E-value=3.3e-05 Score=57.91 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=56.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEccc------------CCCC-CCceEEEEEEcCHHHHHHHHHhhCC
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKD-IYLPRD------------YYSG-EPRGFGFIQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~------------~~~g-~~~g~afV~f~~~~~a~~Al~~l~g 105 (253)
..+.|.|.++|+... ..|.++|++||.|++ +.+... +... ....+..|+|++..+|++||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 346788889987755 457778999999876 222110 0000 124688999999999999999 699
Q ss_pred CeecCeEEEEEEcc
Q 025401 106 QVLLGRELTVVFAE 119 (253)
Q Consensus 106 ~~i~g~~l~V~~a~ 119 (253)
..|+|..|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887765
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.73 E-value=3.6e-05 Score=54.75 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=45.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD 104 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 104 (253)
..++| ++|.++...||.++|..||. ..|.++.+ ..|||.|.+.+.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 45667 99999999999999999994 45666655 379999999999999999764
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.74 E-value=0.00081 Score=61.15 Aligned_cols=55 Identities=11% Similarity=0.343 Sum_probs=41.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
..|+|. ++..+++.+|.++|.+||+|..+.+..+. .-||+|||.+.++++.++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 569997 79999999999999999999999887653 47999999999999877653
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.51 E-value=0.001 Score=50.83 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=36.8
Q ss_pred CCCCceEEEEEEcCHHHHHHHHHhh-CCCeecCeEEEEEEccc
Q 025401 79 SGEPRGFGFIQFVEPDDAAEAKRHM-DGQVLLGRELTVVFAEE 120 (253)
Q Consensus 79 ~g~~~g~afV~f~~~~~a~~Al~~l-~g~~i~g~~l~V~~a~~ 120 (253)
....+|+++|+|.+.++|++||+.| |+..|+| .|.|.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3456899999999999999999999 9999999 999998764
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.34 E-value=0.0024 Score=49.04 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=27.2
Q ss_pred EEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 71 IYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 71 v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
+.|+.+. ...+|||||+|.+.++|++||+.+++.
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 4555553 357899999999999999999887754
No 221
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.25 E-value=0.12 Score=46.52 Aligned_cols=7 Identities=0% Similarity=-0.173 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 025401 94 DDAAEAK 100 (253)
Q Consensus 94 ~~a~~Al 100 (253)
+++..++
T Consensus 117 ~~L~~~F 123 (437)
T 3pgw_S 117 SKLRREF 123 (437)
T ss_pred HHHHHHH
Confidence 3333333
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.52 E-value=0.11 Score=47.82 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=46.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 105 (253)
+..++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..|+..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4567776 99999999999999999954 5666544 3799999999999999998853
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=93.95 E-value=0.6 Score=32.32 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=53.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC-------eecCe
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ-------VLLGR 111 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~-------~i~g~ 111 (253)
...|-|.|-|||..+-..++.-.....|---.|..+ -|.|.|.|.+.++...||++|-+. +|.|.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 456788899999999998888777777766677765 356999999999999999876332 34466
Q ss_pred EEEEE
Q 025401 112 ELTVV 116 (253)
Q Consensus 112 ~l~V~ 116 (253)
.+.|-
T Consensus 82 icdvi 86 (129)
T 4eyt_A 82 ICDVI 86 (129)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 55543
No 224
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=93.49 E-value=0.15 Score=34.04 Aligned_cols=68 Identities=15% Similarity=0.246 Sum_probs=43.6
Q ss_pred eEEEcC-CCCCCCHHHHHHHhcccC-----CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEE
Q 025401 43 SLLVRN-LRHDCRPEDIRRPFEQFG-----AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVV 116 (253)
Q Consensus 43 ~i~V~n-Lp~~~te~~L~~~F~~~G-----~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~ 116 (253)
+|||.. -...+...+|..++..-+ .|-.|.|.. .|.||+... +.|+.+++.|++..+.|+.|.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 566632 234467778877776544 455677753 378998864 56788899999999999999998
Q ss_pred Ecc
Q 025401 117 FAE 119 (253)
Q Consensus 117 ~a~ 119 (253)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=83.13 E-value=4.3 Score=31.54 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=38.4
Q ss_pred CCeEEEcCCCCC---------CCHHHHHHHh--cccCCeeEEEEcccCCCCCCceEEEEEEcC-HHHHHHHHH
Q 025401 41 PTSLLVRNLRHD---------CRPEDIRRPF--EQFGAIKDIYLPRDYYSGEPRGFGFIQFVE-PDDAAEAKR 101 (253)
Q Consensus 41 ~~~i~V~nLp~~---------~te~~L~~~F--~~~G~v~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Al~ 101 (253)
|.+++|-|+|.. ...++|.+.| ..|.++.-..+. +. ....|+|+|+|.. ..-...|+.
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~-~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLW-NY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEE-CS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecc-cC--CCCceeEEEEecCChHHHHHHHH
Confidence 567888899872 3447899977 999887644443 32 2257899999974 444444544
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=78.57 E-value=5.8 Score=25.23 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=42.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
..+|.|.++.-..-...|+..+.+ ..|..+.+... .+.+.|+|.+.++...||+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 356888898877778889999998 78888877544 46788888866677777775
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=76.95 E-value=7 Score=26.90 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=27.2
Q ss_pred CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 67 AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 67 ~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
.|..|.++.. ..||.||++...+++..+|..+.+.
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 3566666543 5899999999999999998877664
No 228
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=71.15 E-value=0.18 Score=38.54 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=17.9
Q ss_pred HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc
Q 025401 55 PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV 91 (253)
Q Consensus 55 e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~ 91 (253)
++||.++|...|.|+.+... +||+||+..
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CCcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 35677788888887655432 789999876
No 229
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=69.40 E-value=15 Score=22.91 Aligned_cols=55 Identities=7% Similarity=0.061 Sum_probs=40.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc----CHHHHHHHHHh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV----EPDDAAEAKRH 102 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~ 102 (253)
.++.|.++.-..-...|+..+.+...|..+.+... .+.+.|+|. +.++...||+.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778888766667789999998888887777554 356889885 45677777775
No 230
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=65.71 E-value=1.3 Score=31.65 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCCeEEEcCCCCCCCHHH
Q 025401 39 DLPTSLLVRNLRHDCRPED 57 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~ 57 (253)
...++|||+|||+.+|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 4456799999999999864
No 231
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=62.06 E-value=22 Score=21.01 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=36.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc---CHHHHHHHHHhh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV---EPDDAAEAKRHM 103 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~Al~~l 103 (253)
++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 4566677655556778899988877877777544 356788886 345555666543
No 232
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=61.52 E-value=17 Score=24.87 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=34.0
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-cC----CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQ-FG----AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~-~G----~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
|.+..+|..++.++|.+.+.. |. ....+.++ + ..| -+|++.+.++.+.||..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~-D-EeG-----D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI-D-EEG-----DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC-C-SSS-----CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE-C-CCC-----CcccccCHHHHHHHHHHH
Confidence 666778889998887655442 22 22233333 2 223 378899999999999853
No 233
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=60.71 E-value=13 Score=22.89 Aligned_cols=55 Identities=9% Similarity=0.158 Sum_probs=38.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc---CHHHHHHHHHh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV---EPDDAAEAKRH 102 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~Al~~ 102 (253)
.++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 35778888766667889999999888887777554 346788874 34555666664
No 234
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=59.96 E-value=26 Score=21.08 Aligned_cols=56 Identities=11% Similarity=0.178 Sum_probs=37.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC---HHHHHHHHHhh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE---PDDAAEAKRHM 103 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~---~~~a~~Al~~l 103 (253)
.++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 35677777655456778888988888888777544 3568888863 34445555543
No 235
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=59.16 E-value=26 Score=21.01 Aligned_cols=54 Identities=15% Similarity=0.297 Sum_probs=37.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC---HHHHHHHHHh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE---PDDAAEAKRH 102 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~---~~~a~~Al~~ 102 (253)
++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 5778888766566778899988888887777544 3567788863 3555566654
No 236
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=58.32 E-value=8.6 Score=26.95 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHh-cccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 48 NLRHDCRPEDIRRPF-EQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 48 nLp~~~te~~L~~~F-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
.++.-+.-++|+... ..||.-.++.+..+ -+.|-..+.+|..+||+.|+-.
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC
Confidence 466778877776544 57888777777633 3688899999999999987654
No 237
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=56.58 E-value=30 Score=20.83 Aligned_cols=55 Identities=9% Similarity=0.119 Sum_probs=37.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRH 102 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~ 102 (253)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|..
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778787655455678888888877877777543 3567888863 4555666664
No 238
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=56.26 E-value=29 Score=20.57 Aligned_cols=55 Identities=11% Similarity=0.225 Sum_probs=38.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRH 102 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~ 102 (253)
.++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+|+.
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 35788888766667789999988877877777543 3568888863 4555566654
No 239
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=55.55 E-value=37 Score=21.64 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=40.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc----CHHHHHHHHHhh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV----EPDDAAEAKRHM 103 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 103 (253)
.+|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 11 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45778888776666779999998888888877544 356888885 345566666653
No 240
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=55.53 E-value=8.4 Score=36.36 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHhc----ccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 48 NLRHDCRPEDIRRPFE----QFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 48 nLp~~~te~~L~~~F~----~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
.++.+.+--||..+|- .+|.|+++.|...+. .....+++|.|.+.++|..|+..|
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 3445555557888883 688899888765432 223567899999999999888765
No 241
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=54.66 E-value=17 Score=24.03 Aligned_cols=56 Identities=7% Similarity=0.239 Sum_probs=39.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHhh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRHM 103 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~l 103 (253)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46777777655556778999998888888777554 3568888853 45566667654
No 242
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=53.30 E-value=28 Score=24.11 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHh-cccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 48 NLRHDCRPEDIRRPF-EQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 48 nLp~~~te~~L~~~F-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
.++.-+.-++|+... ..||.-.++..+.+ --.|-..+.+|..+||+.|+-.
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccC
Confidence 466677878876554 47888777777644 2688889999999999976543
No 243
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=52.99 E-value=37 Score=20.77 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=37.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHhh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRHM 103 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~l 103 (253)
++.|.++.-..-...|+..+...-.|..+.+... .+.+.|.|.. .++...+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4667777655456778888888888887777544 3568888853 45556666653
No 244
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=52.86 E-value=53 Score=22.57 Aligned_cols=56 Identities=9% Similarity=0.082 Sum_probs=40.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHhh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRHM 103 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~l 103 (253)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45778888777677889999998888887777544 3578888873 35556666643
No 245
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=52.58 E-value=36 Score=20.48 Aligned_cols=56 Identities=9% Similarity=0.204 Sum_probs=38.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc----CHHHHHHHHHhh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV----EPDDAAEAKRHM 103 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 103 (253)
.++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 35777787766667778999998888887777544 356788885 345556666643
No 246
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=49.70 E-value=41 Score=20.37 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHh
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRH 102 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~ 102 (253)
..++.|.++.-..-...|+..+.....|..+.+... .+.+.|.|.. .+....+|+.
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346888888777677889999998888887777544 3568888864 2334455554
No 247
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.62 E-value=57 Score=21.96 Aligned_cols=53 Identities=6% Similarity=0.206 Sum_probs=34.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc-CHHHHHHHHHh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV-EPDDAAEAKRH 102 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~Al~~ 102 (253)
+|.|. +.-..-...|+..|.+...|..+.+... .+.+.|+|. +.++...+|+.
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~------~~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLE------DQMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETT------TTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECC------CCEEEEEEeCCHHHHHHHHHH
Confidence 45555 4433345678888988878887777554 346777775 45666677764
No 248
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=49.62 E-value=44 Score=20.69 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=39.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHhh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRHM 103 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~l 103 (253)
.++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 10 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 10 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 45788888877778889999988877776666543 3568888863 35556666654
No 249
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=49.18 E-value=35 Score=23.85 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=41.4
Q ss_pred CeEEEcCCCCCCCHHH--HHHHhc----c-c---C-----CeeEEEEcccCCC--CCCceEEEEEEcCHHH---HHHHHH
Q 025401 42 TSLLVRNLRHDCRPED--IRRPFE----Q-F---G-----AIKDIYLPRDYYS--GEPRGFGFIQFVEPDD---AAEAKR 101 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~--L~~~F~----~-~---G-----~v~~v~i~~~~~~--g~~~g~afV~f~~~~~---a~~Al~ 101 (253)
+.|.|-+||....+.. ++.+|. . | + .|..+.-..++.+ ........|.|....+ ...|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 5789999998733222 333332 1 2 2 2444443322211 1123467777776654 444445
Q ss_pred hhCCCeecCeEEEEE
Q 025401 102 HMDGQVLLGRELTVV 116 (253)
Q Consensus 102 ~l~g~~i~g~~l~V~ 116 (253)
......+.|..|.+.
T Consensus 84 ~k~~vtykg~pirls 98 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHCCEEETTEEEEEE
T ss_pred HhCceeeCCcceeec
Confidence 456788899998875
No 250
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=48.11 E-value=31 Score=23.55 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.6
Q ss_pred CceEEEEEEcCHHHHHHHHH
Q 025401 82 PRGFGFIQFVEPDDAAEAKR 101 (253)
Q Consensus 82 ~~g~afV~f~~~~~a~~Al~ 101 (253)
.....+|+|.+.+.|..++.
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 45688999999999988765
No 251
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=47.81 E-value=43 Score=20.06 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=35.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc---CHHHHHHHHHhh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV---EPDDAAEAKRHM 103 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~Al~~l 103 (253)
++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.+....+|+.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLV------TNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT------TTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHC
Confidence 5677777655455678888888877777766433 356788885 345556666653
No 252
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=47.43 E-value=34 Score=21.19 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=37.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc----CHHHHHHHHHhh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV----EPDDAAEAKRHM 103 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 103 (253)
.+|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.+....+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778888766667789999988877776665433 345788885 345556666654
No 253
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=47.33 E-value=29 Score=20.95 Aligned_cols=55 Identities=13% Similarity=0.208 Sum_probs=36.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHhh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRHM 103 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~l 103 (253)
++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 5677777554445668888888777776666543 3568888863 45556666654
No 254
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=46.99 E-value=44 Score=23.55 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=26.5
Q ss_pred CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 67 AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 67 ~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
.|..+....+ .+||-|||=..+.++..||+.+.+.
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 3555555433 4899999999999999998876544
No 255
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=46.05 E-value=34 Score=23.38 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHh-cccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 48 NLRHDCRPEDIRRPF-EQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 48 nLp~~~te~~L~~~F-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
.++.-+.-++|+.-. ..||...++..+.+ --.|-..+.+|..+||+.|+-.
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs 70 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS 70 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHS
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccC
Confidence 456667777776544 47888777777643 2578889999999999976543
No 256
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=46.02 E-value=48 Score=20.13 Aligned_cols=56 Identities=7% Similarity=0.043 Sum_probs=39.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC--HHHHHHHHHhh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE--PDDAAEAKRHM 103 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~--~~~a~~Al~~l 103 (253)
.++.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .+....+|..+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~------~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFA------TEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETT------TTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCHHHHHHHHHHc
Confidence 35778888766667789999988888887777544 3567888875 34445556543
No 257
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=45.98 E-value=29 Score=24.39 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHh-cccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 48 NLRHDCRPEDIRRPF-EQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 48 nLp~~~te~~L~~~F-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
.++.-+.-++|+... ..||...++..+.+. -.|-..+.+|..+||+.|+-.
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECSS--------CEEECCSHHHHHHHHHHHHHC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecce--------EEEecccHHHHHHHHHHhccC
Confidence 456667777776544 467877777766432 578888999999999976543
No 258
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=51.74 E-value=4.3 Score=28.90 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=38.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEE--EEEEcCHHHHHHHHHhhCCCeec
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFG--FIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~a--fV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
...||.|..+ ..+++|..|+.+.+ +..+.+......|+. .|. |-.|.+.++|..|+..|....-.
T Consensus 24 ~~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l~~ 90 (106)
T 2lfv_A 24 SHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADVQA 90 (106)
Confidence 3456766554 34566777777776 344444432222221 222 34789999999999988654433
No 259
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=45.61 E-value=60 Score=23.14 Aligned_cols=55 Identities=7% Similarity=0.114 Sum_probs=32.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc----CHHHHHHHHHhh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV----EPDDAAEAKRHM 103 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 103 (253)
+|.|.++.-..-...|+..+.+...|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4566666655556667777776666665554332 345777775 345556666654
No 260
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=45.53 E-value=40 Score=26.70 Aligned_cols=28 Identities=7% Similarity=-0.071 Sum_probs=24.0
Q ss_pred CceEEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 82 PRGFGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 82 ~~g~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
.+||.|||=..+.++..||+.|.+....
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 5899999999999999999988776443
No 261
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=45.11 E-value=8.3 Score=32.20 Aligned_cols=33 Identities=9% Similarity=-0.017 Sum_probs=25.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEc
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLP 74 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~ 74 (253)
..++|+|||+.++..-|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999765555544443
No 262
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=43.86 E-value=17 Score=30.10 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=24.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEE
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIY 72 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~ 72 (253)
...++|+|||+.++..-|..++.. ..+..+.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~ 140 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLV 140 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEE
Confidence 356889999999999999999977 5554333
No 263
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=43.76 E-value=27 Score=30.69 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=40.1
Q ss_pred EEEcCCCCCC----CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCe
Q 025401 44 LLVRNLRHDC----RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 44 i~V~nLp~~~----te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 111 (253)
-+||||..-. ....+.++..+||.|..+.+.. .-+|...+.+.|+.++.. +...|.++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~-~~~~f~~r 78 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIK-KGKDFSGR 78 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTT-TTTTTBBC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHh-CcHhhCCC
Confidence 4688886532 2456778888999998888742 356777899999988864 44444433
No 264
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=43.73 E-value=17 Score=23.72 Aligned_cols=65 Identities=8% Similarity=-0.011 Sum_probs=40.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCee
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVL 108 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 108 (253)
.....|.|+-+......+.|.+-+...|--..| ... +..-.+-+--|.+.++|+.++..|...-|
T Consensus 7 ~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i--~~~---~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 7 SGLYKVQIGAFKVKANADSLASNAEAKGFDSIV--LLK---DGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEE--EEE---TTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEE--ecC---CcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 345678889887766666777766665633333 211 11122334478999999999998865444
No 265
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=43.69 E-value=82 Score=22.10 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=25.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhccc--------CCeeEEEEc------ccCCCCCCc-eEEEEEEcC
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQF--------GAIKDIYLP------RDYYSGEPR-GFGFIQFVE 92 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~--------G~v~~v~i~------~~~~~g~~~-g~afV~f~~ 92 (253)
++|| |.++++++++.+++.+| |.|..+..+ .. ...... .|.++.|..
T Consensus 12 ~~~I--l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~-I~K~~~G~Y~l~~f~a 73 (110)
T 2j5a_A 12 TVFA--VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYP-IQKFNNARYFLVQFKT 73 (110)
T ss_dssp EEEE--ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSC-SSSCSEEEEEEEEEEE
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccC-cCCCCEEEEEEEEEEe
Confidence 3555 46777887776665544 345555321 11 122223 466778876
No 266
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=43.05 E-value=48 Score=19.27 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=35.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRH 102 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~ 102 (253)
++.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .+....+|..
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLE------AGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677777654445668888888877877776543 3567888863 4455566654
No 267
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=43.01 E-value=83 Score=21.99 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHhcc-cC---CeeEE-EEcccCCCCCCceEEEEEEcCHHHHHH
Q 025401 51 HDCRPEDIRRPFEQ-FG---AIKDI-YLPRDYYSGEPRGFGFIQFVEPDDAAE 98 (253)
Q Consensus 51 ~~~te~~L~~~F~~-~G---~v~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~ 98 (253)
.+++..+|++.+.+ |+ +++.| .|......+...|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56777777766543 22 33333 33444445667788876 777777654
No 268
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=42.98 E-value=53 Score=19.75 Aligned_cols=56 Identities=7% Similarity=0.098 Sum_probs=38.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHhh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRHM 103 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~l 103 (253)
.++.|.++.-......|+..+...-.|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 45788888766667778999988877877776543 3567888853 45555666643
No 269
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=42.87 E-value=92 Score=22.47 Aligned_cols=47 Identities=11% Similarity=-0.009 Sum_probs=38.2
Q ss_pred HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC
Q 025401 55 PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 55 e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 105 (253)
.+++.+.+..+-.|..|..+. |...-++.|.+.+.++.+..+..|.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~t----G~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIA----GAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEE----SSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeeee----CCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 567888888999999998764 33456788999999999999988876
No 270
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=42.28 E-value=85 Score=21.89 Aligned_cols=48 Identities=15% Similarity=0.340 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHhcc-cC---CeeEE-EEcccCCCCCCceEEEEEEcCHHHHHHH
Q 025401 51 HDCRPEDIRRPFEQ-FG---AIKDI-YLPRDYYSGEPRGFGFIQFVEPDDAAEA 99 (253)
Q Consensus 51 ~~~te~~L~~~F~~-~G---~v~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~A 99 (253)
.+++..+|++.+.+ |+ +++.| .|......+...|||+| |++.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56777777766643 22 33333 33334344567788876 7777766554
No 271
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=39.14 E-value=54 Score=23.19 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhcc-cC---CeeEE-EEcccCCCCCCceEEEEEEcCHHHHHH
Q 025401 51 HDCRPEDIRRPFEQ-FG---AIKDI-YLPRDYYSGEPRGFGFIQFVEPDDAAE 98 (253)
Q Consensus 51 ~~~te~~L~~~F~~-~G---~v~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~ 98 (253)
.+++..+|++.+.+ |+ +++.| .|......+...|||.| |++.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35677777665543 33 22333 33344444667788876 788777764
No 272
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=44.72 E-value=6.6 Score=27.34 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.1
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCC
Q 025401 83 RGFGFIQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 83 ~g~afV~f~~~~~a~~Al~~l~g 105 (253)
.|.|+|.|.+.++...||++|-+
T Consensus 77 egqamirfqnsdeqrlaiqklln 99 (137)
T 2lsl_A 77 EGQAMIRFQNSDEQRLAIQKLLN 99 (137)
Confidence 57899999999998888887643
No 273
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=38.48 E-value=68 Score=24.11 Aligned_cols=47 Identities=15% Similarity=0.293 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHhcc-cC---CeeEE-EEcccCCCCCCceEEEEEEcCHHHHHH
Q 025401 51 HDCRPEDIRRPFEQ-FG---AIKDI-YLPRDYYSGEPRGFGFIQFVEPDDAAE 98 (253)
Q Consensus 51 ~~~te~~L~~~F~~-~G---~v~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~ 98 (253)
.+++..+|.+.+.+ |+ +++.| .|......+...|||+| |++++.|..
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 45677787776654 33 22233 33333334567788877 778777664
No 274
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=38.19 E-value=87 Score=22.28 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=31.5
Q ss_pred EEEcCCCCCCCHHHHHHHhc-------ccCCeeEEEEcccCCCCCCceEE-EEEEcCHHHHHH
Q 025401 44 LLVRNLRHDCRPEDIRRPFE-------QFGAIKDIYLPRDYYSGEPRGFG-FIQFVEPDDAAE 98 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~-------~~G~v~~v~i~~~~~~g~~~g~a-fV~f~~~~~a~~ 98 (253)
|.+-.|...++++++.+++. +.-.|..+.+-.+......--+| +++|++.++.+.
T Consensus 24 IVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 24 TVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 44556777877776555543 34566777665443221112344 568988887653
No 275
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=38.11 E-value=64 Score=23.41 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=19.3
Q ss_pred cCCeeEEEEcccCCCCCCceEEEEE-EcCHHHHHHHHHhh
Q 025401 65 FGAIKDIYLPRDYYSGEPRGFGFIQ-FVEPDDAAEAKRHM 103 (253)
Q Consensus 65 ~G~v~~v~i~~~~~~g~~~g~afV~-f~~~~~a~~Al~~l 103 (253)
+-.|+.|.|-.|. ....+||. |-+.++.+.+++.|
T Consensus 43 ~vtVt~V~vS~Dl----~~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDF----SACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTS----CCEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCC----cEEEEEEEecCChhhHHHHHHHH
Confidence 4578888886652 23445666 44554444444433
No 276
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=37.79 E-value=38 Score=23.26 Aligned_cols=63 Identities=6% Similarity=-0.010 Sum_probs=36.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcc-cCCCCCCceEEEEEEc--CHHHHHHHHHhhCC
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPR-DYYSGEPRGFGFIQFV--EPDDAAEAKRHMDG 105 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~-~~~~g~~~g~afV~f~--~~~~a~~Al~~l~g 105 (253)
.|.|.-....+.+..|.++..+|+.-..|..-. +...+..-|.-+|++. +.+++++|+..|..
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 344432233455666778888887533332211 1223445688888887 46677888877643
No 277
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=37.77 E-value=68 Score=19.49 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=35.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc-CHHHHHHHHHh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV-EPDDAAEAKRH 102 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~Al~~ 102 (253)
.++.| ++.-..-...|+..+.+...| .+.+... .+-+.|+|. +.++...+|+.
T Consensus 4 ~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~------~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 4 HEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLP------NKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETT------TTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcC------CCEEEEEecCCHHHHHHHHHH
Confidence 35667 776555567788888887777 7777554 235667764 56667777764
No 278
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=37.76 E-value=53 Score=23.32 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=34.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc----CHHHHHHHHHhh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV----EPDDAAEAKRHM 103 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 103 (253)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 35667776655445667777777766766666443 346777775 345556666654
No 279
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=37.74 E-value=22 Score=29.02 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=21.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCee
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIK 69 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~ 69 (253)
..+.|+|||+.++...|..++.....+.
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~ 118 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIA 118 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcc
Confidence 3588999999999998888887543343
No 280
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.49 E-value=26 Score=25.32 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=23.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCee
Q 025401 39 DLPTSLLVRNLRHDCRPEDIRRPFEQFGAIK 69 (253)
Q Consensus 39 ~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~ 69 (253)
-.+++|+|.++. ..+.++|++++..+|-..
T Consensus 23 f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v 52 (129)
T 2d8m_A 23 LQGVVVVLSGFQ-NPFRSELRDKALELGAKY 52 (129)
T ss_dssp STTEEEEEESCC-TTHHHHHHHHHHHTTEEE
T ss_pred CCCeEEEEeCCC-cHHHHHHHHHHHHcCCEE
Confidence 456789999886 567788999999998653
No 281
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=37.18 E-value=87 Score=25.37 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=41.6
Q ss_pred CCeEEEcCCCCCCC--HHHHHHHhcc-----cCC--------eeEEEEcccCCC--CCCceEEEEEEcCHHHHH---HHH
Q 025401 41 PTSLLVRNLRHDCR--PEDIRRPFEQ-----FGA--------IKDIYLPRDYYS--GEPRGFGFIQFVEPDDAA---EAK 100 (253)
Q Consensus 41 ~~~i~V~nLp~~~t--e~~L~~~F~~-----~G~--------v~~v~i~~~~~~--g~~~g~afV~f~~~~~a~---~Al 100 (253)
-+.|.|-+||.... +..+..+|.. |.. |..+.-..+..+ .......+|.|....+-+ .|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 36799999998876 4444444432 322 233322211111 112335677777665544 444
Q ss_pred HhhCCCeecCeEEEEEE
Q 025401 101 RHMDGQVLLGRELTVVF 117 (253)
Q Consensus 101 ~~l~g~~i~g~~l~V~~ 117 (253)
.......+.|..|.+..
T Consensus 132 R~k~~vtykG~pIrlsa 148 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTV 148 (233)
T ss_dssp HTTSCEEETTEEEEEEE
T ss_pred HHhcccccCCCceEEeC
Confidence 44567788999887753
No 282
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=36.59 E-value=31 Score=20.76 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=33.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
++.|.++.-..-...|+..+... .|..+.+... .+.+.|+|...++...+|+.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHHH
Confidence 46666665444456688888877 7776666543 35678888765444455553
No 283
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=36.47 E-value=65 Score=18.87 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=36.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRH 102 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~ 102 (253)
++.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|+.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETT------TTEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5778888766556778888888877877776543 3567888863 3445556654
No 284
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=36.41 E-value=39 Score=26.64 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=31.9
Q ss_pred CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 54 RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 54 te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
.+++|.+.+..|.++. +..+.-+..-||+|.+.++...+|..|.|.
T Consensus 66 ~~~~I~~Ei~aYnpLi-------P~~~~l~ATl~IE~~d~~er~~~L~~L~Gi 111 (194)
T 3fjv_A 66 DEDGIQAELDAYLPLV-------PDGSNLKATLQIEYENETQRRAALARLVGI 111 (194)
T ss_dssp SHHHHHHHHHHHGGGC-------CCSSEEEEEEEECCSSHHHHHHHHHHTTTG
T ss_pred CHHHHHHHHHHhcccC-------CCCCcEEEEEEEEcCCHHHHHHHHHHhcCc
Confidence 4555666666665432 123334556799999999999999999886
No 285
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=36.16 E-value=21 Score=30.99 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=19.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcc
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQ 64 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~ 64 (253)
..++|+|||++++..-|..+|..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999999888888764
No 286
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=35.78 E-value=44 Score=30.08 Aligned_cols=54 Identities=24% Similarity=0.228 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHhc----ccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 49 LRHDCRPEDIRRPFE----QFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 49 Lp~~~te~~L~~~F~----~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
+..+.+.-+|..+|. .+|-|+.+.|...+. ......+++.|.+.++|..|+..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~-p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPK-PRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEEC-CSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeec-CceeEEEEEEcCCHHHHHHHHHHH
Confidence 333334445666653 567788887765442 223456889999999998887765
No 287
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=35.51 E-value=33 Score=29.86 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=35.8
Q ss_pred EEcCCCCC---CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 45 LVRNLRHD---CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 45 ~V~nLp~~---~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
+||||..- -....+.+++.+||.|..+.+. +.-+|.+.+.+.++.++..
T Consensus 20 liG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 20 IIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG---------SQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHHT
T ss_pred cccChhhhccccHhHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHhc
Confidence 46777532 2346688889999999887763 2457888899999988864
No 288
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=34.18 E-value=1.4e+02 Score=21.99 Aligned_cols=47 Identities=15% Similarity=0.420 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHhc-ccCC---eeEE-EEcccCCCCCCceEEEEEEcCHHHHHH
Q 025401 51 HDCRPEDIRRPFE-QFGA---IKDI-YLPRDYYSGEPRGFGFIQFVEPDDAAE 98 (253)
Q Consensus 51 ~~~te~~L~~~F~-~~G~---v~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~ 98 (253)
.+++..+|.+.+. .|+. ++.| .|......+...|||.| |++.+.|..
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 4577888888775 4442 2222 23333334567788877 778777664
No 289
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=34.15 E-value=80 Score=23.42 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=30.3
Q ss_pred HHHHhcccCCeeEEEEcccC-CCC--------------CCceEEEEEEcCHHHHHHHHHh
Q 025401 58 IRRPFEQFGAIKDIYLPRDY-YSG--------------EPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 58 L~~~F~~~G~v~~v~i~~~~-~~g--------------~~~g~afV~f~~~~~a~~Al~~ 102 (253)
..++|..||.+..+.+..+. ..| ..--|.+|+|.+.+...+|.++
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 45789999987766554322 112 2235889999999988877654
No 290
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=33.72 E-value=1.3e+02 Score=21.69 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHH-hhC
Q 025401 49 LRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR-HMD 104 (253)
Q Consensus 49 Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~-~l~ 104 (253)
++.....+++.+.+..+-.|..|..+ +|...-++.|.+.+.++.+..+. .|.
T Consensus 76 ~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 76 LKSAKDYPSALAKLESLDEVTEAYYT----TGHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp ESSGGGHHHHHHHHHTCTTEEEEEEE----SSSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred ECCCCCHHHHHHHHhCCcCeEEEEEE----ecccCEEEEEEECCHHHHHHHHHHHhh
Confidence 44333457788899999999999987 44445678899999999988874 443
No 291
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=33.68 E-value=23 Score=30.81 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=32.8
Q ss_pred EEcCCCCC---CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHH
Q 025401 45 LVRNLRHD---CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101 (253)
Q Consensus 45 ~V~nLp~~---~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 101 (253)
+||||..- -....+.++.++||+|..+.+.. .-+|...+++.++.++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAW---------TPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETT---------EEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEECC---------eeEEEECCHHHHHHHHH
Confidence 57776533 23456788889999998887742 23555667888777765
No 292
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=33.67 E-value=26 Score=23.74 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=24.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccc
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQF 65 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~ 65 (253)
.-..+..|.|.+.+..++.++.++|+..|
T Consensus 15 ~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 15 TLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp -CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred ccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 34667899999999999999999988887
No 293
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=33.41 E-value=95 Score=19.85 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=33.1
Q ss_pred EEEcCCCCCCCHHHHHHHhcccC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQFG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 105 (253)
|.|...+..-.-.+|..+|.+.| .|..+.+.... +.......|+..+.+..+.+++.|..
T Consensus 8 l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 8 IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD--GIFTCNLMIFVKNTDKLTTLMDKLRK 68 (88)
T ss_dssp EEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECS--SEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcC--CEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 43433333334578888888876 57676664321 11111112345567777777777754
No 294
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=33.12 E-value=1.3e+02 Score=21.30 Aligned_cols=55 Identities=5% Similarity=0.078 Sum_probs=32.7
Q ss_pred EEEcCCCCCCCHHHHHHHhc-------ccCCeeEEEEcccCCC-CCCc--eE-EEEEEcCHHHHHH
Q 025401 44 LLVRNLRHDCRPEDIRRPFE-------QFGAIKDIYLPRDYYS-GEPR--GF-GFIQFVEPDDAAE 98 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~-------~~G~v~~v~i~~~~~~-g~~~--g~-afV~f~~~~~a~~ 98 (253)
|.+-.|...++++++.+++. +.-.|..+.+-.+... +... -+ .+++|++.++.+.
T Consensus 24 IVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~ 89 (121)
T 3bb5_A 24 LVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDA 89 (121)
T ss_dssp EEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHH
Confidence 44567888888776555543 3556777766544321 2222 23 3568999887654
No 295
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=33.03 E-value=21 Score=28.98 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=21.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCe
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAI 68 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v 68 (253)
..+.|+|||+.++...|..++.....+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~ 122 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCV 122 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGC
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCC
Confidence 358899999999999999988764333
No 296
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=32.96 E-value=82 Score=21.98 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 50 RHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 50 p~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
+.+++|++|..++...=.+..+.|..-...+. -|...+..+.+.||+.. .-.|..|++.+.+
T Consensus 33 ~~~~tweel~~mvk~~f~L~~~~IkY~DEenD-----~V~i~Sq~E~eEAlkva---~k~~n~L~m~V~~ 94 (101)
T 1wj6_A 33 PENTTWADIEAMVKVSFDLNTIQIKYLDEENE-----EVSINSQGEYEEALKMA---VKQGNQLQMQVHE 94 (101)
T ss_dssp TTTSCHHHHHHHHHHHHCCSSBCCEEECTTSC-----EECCCSHHHHHHHHHHH---HHHTSEEEEECCB
T ss_pred CCCCCHHHHHHHHHHHcCCCceEEEEecCCCC-----EEEEecHHHHHHHHHHh---ccCCCEEEEEEee
Confidence 44899999998885322222222222111221 45556777778887731 2225567776654
No 297
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=32.87 E-value=78 Score=19.33 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=34.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRH 102 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~ 102 (253)
++.|.++.-..-...|+..+...-.|..+.+... .+.+.|.|.. .+....+|..
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 63 (80)
T 1jww_A 6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDK 63 (80)
T ss_dssp EEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSS------SSEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677777655445668888888777766654332 3567888853 4455566654
No 298
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=32.84 E-value=1e+02 Score=20.03 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=39.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC----HHHHHHHHHhh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE----PDDAAEAKRHM 103 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~l 103 (253)
.++.|.++.-......|...+.....|..+.+... .+.+.|+|.. .+....+|..+
T Consensus 18 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 18 SYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVP------SRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45788888777677889999988877877776543 3567888863 45555666643
No 299
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=32.73 E-value=51 Score=24.50 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=26.7
Q ss_pred eeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCC
Q 025401 68 IKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQ 106 (253)
Q Consensus 68 v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 106 (253)
|..|.++.. ..||.||++...++...+|..+.|.
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 556666532 4899999999999999999887765
No 300
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=32.48 E-value=28 Score=31.59 Aligned_cols=43 Identities=12% Similarity=-0.040 Sum_probs=28.3
Q ss_pred HHHHHh--cccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHH
Q 025401 57 DIRRPF--EQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100 (253)
Q Consensus 57 ~L~~~F--~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 100 (253)
+|..+| ..+|.|+.+.|...+. ......+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 356666 3689999988765542 222346788999877765543
No 301
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=32.45 E-value=81 Score=22.71 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=40.7
Q ss_pred eEEEcCCCCCCCHHHH---HHHhcccCCeeEEEEcccCCCCCCceEEEEEEc--CHHHHHHHHHhh-------CCC---e
Q 025401 43 SLLVRNLRHDCRPEDI---RRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV--EPDDAAEAKRHM-------DGQ---V 107 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L---~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~--~~~~a~~Al~~l-------~g~---~ 107 (253)
.|.|.++|..+..+-. +.+-..|.--+...|+-. ..|.-.|.|. +.+..++||+.| .|. .
T Consensus 44 ~i~itgvpeqvrkelakeaerl~~efni~v~y~imgs-----gsgvm~i~f~gddlea~ekalkemirqarkfagtvtyt 118 (170)
T 4hhu_A 44 VIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGS-----GSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYT 118 (170)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECT-----TCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeC-----CceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEE
Confidence 3677888877654322 223334443334444422 3567777774 788888888754 343 4
Q ss_pred ecCeEEEEEE
Q 025401 108 LLGRELTVVF 117 (253)
Q Consensus 108 i~g~~l~V~~ 117 (253)
|+|..|.|.+
T Consensus 119 l~gn~l~i~i 128 (170)
T 4hhu_A 119 LSGNRLVIVI 128 (170)
T ss_dssp ECSSEEEEEE
T ss_pred EeCCEEEEEE
Confidence 6677776654
No 302
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=32.33 E-value=12 Score=30.75 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=23.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEE
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYL 73 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i 73 (253)
...|+|||+.++...|..++.....+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 3489999999999999999986655544443
No 303
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=32.09 E-value=1.5e+02 Score=22.53 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=40.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc----CHHHHHHHHHhh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV----EPDDAAEAKRHM 103 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 103 (253)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 124 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLA------EGTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46778888766666789999999888888877554 356888885 345566667654
No 304
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=31.71 E-value=9.9 Score=27.76 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=0.0
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCCeecCe
Q 025401 84 GFGFIQFVEPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 84 g~afV~f~~~~~a~~Al~~l~g~~i~g~ 111 (253)
-++|++|.++..+..|++.|++....|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~ 32 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGR 32 (135)
T ss_dssp ----------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCCC
Confidence 4678888899999999999888766554
No 305
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=31.41 E-value=30 Score=32.13 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=33.1
Q ss_pred CHHHHHHHhc----ccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhC
Q 025401 54 RPEDIRRPFE----QFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMD 104 (253)
Q Consensus 54 te~~L~~~F~----~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 104 (253)
+.-+|..+|. .+|.|+.+.|...+. .....++++.|.+.++|..|+..+.
T Consensus 286 ~g~dl~~~~~GseGtlGIIT~~tlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 286 AGINYKHIILGSEGTLGIITEAVMKVHAV-PQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp -CCCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCcchhhhhccCCCCcEEEEEEEEEEEec-ccceEEEEEEcCCHHHHHHHHHHHH
Confidence 3345666653 567888888765542 2224577899999999988887653
No 306
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=31.16 E-value=1e+02 Score=23.87 Aligned_cols=49 Identities=4% Similarity=-0.151 Sum_probs=32.6
Q ss_pred CeEEEcCCCCCCCHHH--------HHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCH
Q 025401 42 TSLLVRNLRHDCRPED--------IRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEP 93 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~--------L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 93 (253)
..=||-.||..++.++ ++++|..+|-|..+.|..+. .....|.|.|.+.
T Consensus 71 are~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~---~~NpHaHim~t~R 127 (185)
T 2ns6_A 71 FKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGG---GENPHCHLMISER 127 (185)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEET---TTEEEEEEEECCB
T ss_pred EEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCC---CCCceEEEEEeec
Confidence 3445567999998765 34556677888888877532 2345788877653
No 307
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=31.14 E-value=1.4e+02 Score=20.98 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=31.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-------cCCeeEEEEcccCCC--CCCceEEEEEEcCHHHHHH
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQ-------FGAIKDIYLPRDYYS--GEPRGFGFIQFVEPDDAAE 98 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~-------~G~v~~v~i~~~~~~--g~~~g~afV~f~~~~~a~~ 98 (253)
|.+-.|...++++++.++... .-.|..+.+-.+... ....-..+++|++.++.+.
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCSCSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCCCCCCeeEEEEEEECCHHHHHH
Confidence 445578888888876655543 334566665444321 1122334568888877653
No 308
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=30.26 E-value=1.4e+02 Score=20.67 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=32.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-------cCCeeEEEEcccCCC-CC---CceEEEEEEcCHHHHHH
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQ-------FGAIKDIYLPRDYYS-GE---PRGFGFIQFVEPDDAAE 98 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~-------~G~v~~v~i~~~~~~-g~---~~g~afV~f~~~~~a~~ 98 (253)
|.+-.|...++++++.++... .-.|..+.+-.+... +. ..-..+++|++.++.+.
T Consensus 14 iVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (112)
T 1q4r_A 14 VLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAE 79 (112)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHH
Confidence 445578888888876655543 345566665444322 21 22344578999887654
No 309
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=30.19 E-value=1.7e+02 Score=21.87 Aligned_cols=51 Identities=8% Similarity=0.182 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 48 NLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 48 nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
.++. ...+++.+.+..+-+|..|..+ +|...-++.|.+.+.++.+..++.|
T Consensus 94 ~~~~-~~~~~v~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~l~~l 144 (171)
T 2e1c_A 94 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLI 144 (171)
T ss_dssp EECT-TCHHHHHHHHHTSTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred EECc-chHHHHHHHHhcCcCeEEEEEe----eCCCCEEEEEEECCHHHHHHHHHHH
Confidence 4443 3557788889999999999886 3444567889999999988877554
No 310
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=29.76 E-value=1.1e+02 Score=20.79 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=36.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcc-cCCCCCCceEEEEEEcC-HHHHHHHHHhhC
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPR-DYYSGEPRGFGFIQFVE-PDDAAEAKRHMD 104 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~-~~~~g~~~g~afV~f~~-~~~a~~Al~~l~ 104 (253)
.|.|.-....+.+..|.++..+||.-..|..-. +...+..-|.-+|++.- .++.++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLR 88 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHH
Confidence 455544444566777888888888544433211 22234456778888863 555677777664
No 311
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=29.73 E-value=1.2e+02 Score=21.48 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=36.2
Q ss_pred CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHH-HhhCC
Q 025401 54 RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK-RHMDG 105 (253)
Q Consensus 54 te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al-~~l~g 105 (253)
..+++.+.+..+..|..|..+ +|...-++.|.+.+.++.+..+ +.|..
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~----~G~~d~~~~v~~~d~~~l~~~~~~~l~~ 124 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLS----SGDHMIMAVIWAKDGEDLAEIISNKIGK 124 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCC----SSSSSEEEEEEESSHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEe----cCCCCEEEEEEECCHHHHHHHHHHHhhc
Confidence 456777888889999988765 4444567889999999999888 55543
No 312
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.56 E-value=23 Score=22.75 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=13.6
Q ss_pred cCCeeEEEEcccCCCCCCceEEEEEEcCH
Q 025401 65 FGAIKDIYLPRDYYSGEPRGFGFIQFVEP 93 (253)
Q Consensus 65 ~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 93 (253)
.|+|+.|... +..|||.|++.
T Consensus 27 lGtV~kV~~~--------~~~ClV~FeD~ 47 (68)
T 2e5p_A 27 LGTIKKVDSA--------REVCLVQFEDD 47 (68)
T ss_dssp EEEEEEEETT--------TTEEEEEETTT
T ss_pred EeEEEEEecC--------CcEEEEEEccC
Confidence 3566665533 45799999863
No 313
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=29.13 E-value=1.9e+02 Score=22.59 Aligned_cols=55 Identities=7% Similarity=0.074 Sum_probs=36.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccc------CCe-eEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 41 PTSLLVRNLRHDCRPEDIRRPFEQF------GAI-KDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 41 ~~~i~V~nLp~~~te~~L~~~F~~~------G~v-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
+..+||. |....+++++.+++..+ +.| +.+.++-+ .-+++.|.+-..|..|...|
T Consensus 75 ~lMmFV~-v~g~~Se~Ete~it~lWQtsL~NnhI~~qry~Id~-------dr~iFm~~DGs~a~E~KdFL 136 (195)
T 2kgl_A 75 TLMMFVT-VSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGS-------DRAIFMLRDGSYAWEIKDFL 136 (195)
T ss_dssp CCEEEEE-SSSCSCHHHHHHHHHHHHHHGGGSCCEEEEEEETT-------EEEEEEESCSHHHHHHHHHH
T ss_pred ceEEEEE-eCCCCCHHHHHHHHHHHHHHHHhCCeeEEEEEecC-------CeEEEEeCchHHHHHHHHHH
Confidence 4457775 55568888777666533 233 34444432 56899999999999888865
No 314
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis}
Probab=29.12 E-value=2e+02 Score=23.01 Aligned_cols=35 Identities=3% Similarity=-0.030 Sum_probs=24.3
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHhcccC---CeeEEEEc
Q 025401 40 LPTSLLVRNLRHD-CRPEDIRRPFEQFG---AIKDIYLP 74 (253)
Q Consensus 40 ~~~~i~V~nLp~~-~te~~L~~~F~~~G---~v~~v~i~ 74 (253)
...+|||-++.-. ..+..|.+.|.+.| .|..+.+.
T Consensus 6 ~~pvvliHG~~~~~~~~~~l~~~L~~~g~~~~vi~~dv~ 44 (249)
T 3fle_A 6 TTATLFLHGYGGSERSETFMVKQALNKNVTNEVITARVS 44 (249)
T ss_dssp CEEEEEECCTTCCGGGTHHHHHHHHTTTSCSCEEEEEEC
T ss_pred CCcEEEECCCCCChhHHHHHHHHHHHcCCCceEEEEEEC
Confidence 4568999888765 45678888888776 35555544
No 315
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.90 E-value=81 Score=21.28 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=36.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-cC-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQ-FG-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
.|+..+....+..+|++.+++ |+ .|..|..+.-+ .+ .--|||.+..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHHh
Confidence 344556788899999888876 44 45666544332 12 23599999887777765544
No 316
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=28.73 E-value=5.9 Score=26.30 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=39.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEE-EEcCHHHHHHHHHhhCCCeecCe
Q 025401 40 LPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFI-QFVEPDDAAEAKRHMDGQVLLGR 111 (253)
Q Consensus 40 ~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV-~f~~~~~a~~Al~~l~g~~i~g~ 111 (253)
....|.|+-+......+.|.+-+...|--..|. .. +. .--.+| -|.+.++|+.++..|...-|.+.
T Consensus 8 ~~~~vQvGaF~~~~~A~~l~~~L~~~G~~a~i~--~~---~~-~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~ 74 (81)
T 1uta_A 8 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKIT--TN---NG-WNRVVIGPVKGKENADSTLNRLKMAGHTNC 74 (81)
T ss_dssp CBCCCBCCEESCHHHHHHHHHHHHHHTCCEEEE--EC---SS-SEEEEESSCBTTTHHHHHHHHHHHHCCSCC
T ss_pred ccEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEE--eC---Cc-EEEEEECCcCCHHHHHHHHHHHHHcCCCcE
Confidence 346788888877666677777776666433332 11 11 112333 67788999988888765444443
No 317
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=28.39 E-value=1.7e+02 Score=21.15 Aligned_cols=53 Identities=8% Similarity=0.179 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCC
Q 025401 48 NLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDG 105 (253)
Q Consensus 48 nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 105 (253)
.++. ...+++.+.+..+-.|..|..+ +|...-++.|.+.+.++....++.|..
T Consensus 74 ~~~~-~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~~~~l~~ 126 (151)
T 2cyy_A 74 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIGS 126 (151)
T ss_dssp EECT-TCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred EECc-ccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEEECCHHHHHHHHHHHhC
Confidence 4443 3567888899999999999886 344456788999999998888765543
No 318
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=28.10 E-value=51 Score=21.49 Aligned_cols=55 Identities=13% Similarity=-0.003 Sum_probs=34.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc-CHHHHHHHHHh
Q 025401 42 TSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV-EPDDAAEAKRH 102 (253)
Q Consensus 42 ~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~Al~~ 102 (253)
.+|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+|+.
T Consensus 24 ~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~------~~~~~V~~~~~~~~i~~~i~~ 79 (85)
T 2k2p_A 24 LSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPA------SRTVVVGGVSDAAHIAEIITA 79 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETT------TTEEEEESCCCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECC------CCEEEEEecCCHHHHHHHHHH
Confidence 35666666544445668888887777777766543 345677764 45556666664
No 319
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=27.71 E-value=38 Score=22.61 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=30.9
Q ss_pred CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEE
Q 025401 53 CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTV 115 (253)
Q Consensus 53 ~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V 115 (253)
-|+++|+.+++.|-.-. . .--.+|...+-++..+|.+..+.++|+-+.-+|
T Consensus 33 ktedelkkyleefrkes----------q--nikvlilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKES----------Q--NIKVLILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSHHHHHHHHHHHTSST----------T--SEEEEEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccHHHHHHHHHHHHhhc----------c--CeEEEEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 57888988888774311 0 112455566777778877765556665544443
No 320
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=26.90 E-value=1.8e+02 Score=21.35 Aligned_cols=51 Identities=8% Similarity=0.044 Sum_probs=37.3
Q ss_pred CCCCCC--CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 48 NLRHDC--RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 48 nLp~~~--te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
.++... ..+++.+.+..+-.|..|..+ +|...-+++|.+.+.++....+..
T Consensus 70 ~v~~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~D~~l~v~~~d~~~l~~~l~~ 122 (162)
T 3i4p_A 70 RTASHSIEWLKRFSEVVSEFPEVVEFYRM----SGDVDYLLRVVVPDIAAYDAFYKR 122 (162)
T ss_dssp ECCSCCHHHHHHHHHHHHHCTTEEEEEEC----CSSCSEEEEEEESSHHHHHHHHHH
T ss_pred EEcCCChHHHHHHHHHHhcCCCEEEeeec----CCCCCEEEEEEECCHHHHHHHHHH
Confidence 455432 245677788889999999886 444456788999999998887764
No 321
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=26.79 E-value=43 Score=23.29 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhcc-cCCeeEEEEcc----cCCCCCCceEEEEEEcCHHHHHH
Q 025401 51 HDCRPEDIRRPFEQ-FGAIKDIYLPR----DYYSGEPRGFGFIQFVEPDDAAE 98 (253)
Q Consensus 51 ~~~te~~L~~~F~~-~G~v~~v~i~~----~~~~g~~~g~afV~f~~~~~a~~ 98 (253)
.+++..+|++.+.+ |+.-.++.++. ....+...|||+| |++.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35677777665543 32212222222 2223456677766 655555443
No 322
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=25.74 E-value=99 Score=26.80 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=30.1
Q ss_pred HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 55 PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 55 e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
...|.++..+||+|..+.+.. .-+|.+.+++.++.++..
T Consensus 35 ~~~~~~l~~kYG~i~~~~~g~---------~~~vvv~dp~~~~~il~~ 73 (487)
T 3n9y_A 35 HLHHVQNFQKYGPIYREKLGN---------VESVYVIDPEDVALLFKS 73 (487)
T ss_dssp HHHHHHHHHHHCSEEEEEETT---------EEEEEECCHHHHHHHHHT
T ss_pred hHHHHHHHHHcCceeeccCCC---------CCEEEEcCHHHHHHHHHh
Confidence 356778889999999887742 347788899999988763
No 323
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=24.95 E-value=1e+02 Score=26.87 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=29.9
Q ss_pred EEEcCCCCC--CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHH
Q 025401 44 LLVRNLRHD--CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101 (253)
Q Consensus 44 i~V~nLp~~--~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 101 (253)
-+||||..- -....|.++..+||.|..+.+. +.-+|...+++.++.++.
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG---------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 456776532 2345678888999999888764 235777788998888875
No 324
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=24.95 E-value=1.9e+02 Score=20.63 Aligned_cols=25 Identities=16% Similarity=0.003 Sum_probs=18.7
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCCee
Q 025401 83 RGFGFIQFVEPDDAAEAKRHMDGQVL 108 (253)
Q Consensus 83 ~g~afV~f~~~~~a~~Al~~l~g~~i 108 (253)
+..+.|.+++.+.|.++|+. .|..+
T Consensus 111 ~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 111 VANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp EEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred cEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 45677788888888888885 56554
No 325
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=24.91 E-value=1e+02 Score=17.54 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=32.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEc-CHHHHHHHHHh
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFV-EPDDAAEAKRH 102 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~Al~~ 102 (253)
++.|.++.-..-...|+..+.....|..+.+... .+.+.|++. +.++...+|..
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~i~~~i~~ 58 (64)
T 2xmm_A 4 QLTVPTIACEACAEAVTKAVQNEDAQATVQVDLT------SKKVTITSALGEEQLRTAIAS 58 (64)
T ss_dssp EEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTT------TCEEEEECSSCHHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEec------CCEEEEEecCCHHHHHHHHHH
Confidence 4666666544445667888877766777766543 245566543 44555666664
No 326
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=24.90 E-value=85 Score=21.60 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=28.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccc--------CCeeEEEEc------ccCCCCCCc-eEEEEEEcCHHHHHHHHH
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQF--------GAIKDIYLP------RDYYSGEPR-GFGFIQFVEPDDAAEAKR 101 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~--------G~v~~v~i~------~~~~~g~~~-g~afV~f~~~~~a~~Al~ 101 (253)
++|| |.++++++++.+++.+| |.|..+..+ ..- ..... .|.++.|....++.+-|+
T Consensus 6 ~~~I--l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I-~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 6 VNIV--LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPI-AKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp EEEE--ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEECHHHHHHHH
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCc-CCCCEEEEEEEEEEeChHHHHHHH
Confidence 3455 46677887776666544 455554321 110 11112 467788875544444443
No 327
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=24.60 E-value=1.9e+02 Score=20.40 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=30.9
Q ss_pred EEEcCCCCCCCHHHHHHHhc------ccCCeeEEEEcccCCC----CCCc--eEE-EEEEcCHHHHH
Q 025401 44 LLVRNLRHDCRPEDIRRPFE------QFGAIKDIYLPRDYYS----GEPR--GFG-FIQFVEPDDAA 97 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~------~~G~v~~v~i~~~~~~----g~~~--g~a-fV~f~~~~~a~ 97 (253)
|.+-.|...++++++.++.. +.-.|..+.+-.+... +... -+| +++|++.++.+
T Consensus 24 IVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~ 90 (120)
T 3bn7_A 24 QVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQK 90 (120)
T ss_dssp EEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHH
Confidence 44557888888887655543 2345556666544332 1122 234 56888887654
No 328
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=24.49 E-value=90 Score=21.21 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=35.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcc-cCCCCCCceEEEEEEcC-HHHHHHHHHhhC
Q 025401 43 SLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPR-DYYSGEPRGFGFIQFVE-PDDAAEAKRHMD 104 (253)
Q Consensus 43 ~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~-~~~~g~~~g~afV~f~~-~~~a~~Al~~l~ 104 (253)
.|.|.-....+.+..|-++..+||.-..|..-. +...+..-|.-+|++.- .++.++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLR 88 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHH
Confidence 344443334456667778888887544432211 22234456778888863 556677777664
No 329
>3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum}
Probab=24.38 E-value=2.4e+02 Score=22.53 Aligned_cols=53 Identities=11% Similarity=0.173 Sum_probs=30.4
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHhcccC----CeeEEEEcccCC--------CCCCceEEEEEEcC
Q 025401 40 LPTSLLVRNLRHD-CRPEDIRRPFEQFG----AIKDIYLPRDYY--------SGEPRGFGFIQFVE 92 (253)
Q Consensus 40 ~~~~i~V~nLp~~-~te~~L~~~F~~~G----~v~~v~i~~~~~--------~g~~~g~afV~f~~ 92 (253)
...+|||-++..+ ..++.|.+.|.+.| .|..+.+...-. ......+..|.|++
T Consensus 4 ~~pvv~iHG~~~~~~~~~~~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~ 69 (250)
T 3lp5_A 4 MAPVIMVPGSSASQNRFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFAN 69 (250)
T ss_dssp CCCEEEECCCGGGHHHHHHHHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEecc
Confidence 3468999998765 34667777776644 355554432211 01123456677775
No 330
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=23.74 E-value=1.6e+02 Score=20.24 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=23.3
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEEcc
Q 025401 83 RGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVFAE 119 (253)
Q Consensus 83 ~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~a~ 119 (253)
.....|...+.+-|++||... ..++.+.|.|-|..
T Consensus 51 ativvvvvddkewaekairfv--kslgaqvliiiydq 85 (134)
T 2l69_A 51 ATIVVVVVDDKEWAEKAIRFV--KSLGAQVLIIIYDQ 85 (134)
T ss_dssp CEEEEEECSSHHHHHHHHHHH--HHHCCCCEEEEECS
T ss_pred CeEEEEEEccHHHHHHHHHHH--HhcCCeEEEEEEeC
Confidence 456778888999999998854 23444555555543
No 331
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=23.68 E-value=1.4e+02 Score=20.23 Aligned_cols=59 Identities=15% Similarity=0.067 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeecCeEEEEEE
Q 025401 51 HDCRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLLGRELTVVF 117 (253)
Q Consensus 51 ~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~V~~ 117 (253)
..++|++|..++...=.+..+.|..-...+. -|...+..+.+.|++.. .-.|..|++.+
T Consensus 26 ~~~tweel~~mvk~~f~L~~~~ikY~DEenD-----~v~i~Sq~E~eEAlkva---~k~~n~L~m~v 84 (87)
T 2bkf_A 26 ENTTWADIEAMVKVSFDLNTIQIKYLDEENE-----EVSINSQGEYEEALKMA---VKQGNQLQMQV 84 (87)
T ss_dssp GGCCHHHHHHHHHHHHTCSSEEEEEECTTSC-----EEEECSHHHHHHHHHHH---HHTTTEEEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEEEcCCCC-----EEEEecHHHHHHHHHHh---ccCCCEEEEEE
Confidence 4789999998886322233334333222222 45566777778887731 11244455554
No 332
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=23.42 E-value=43 Score=23.32 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=33.7
Q ss_pred CCCHHHHHHHhcccCCeeEEEEc-ccCCCCCCceEEEEEEc-CHHHHHHHHHhhCCC
Q 025401 52 DCRPEDIRRPFEQFGAIKDIYLP-RDYYSGEPRGFGFIQFV-EPDDAAEAKRHMDGQ 106 (253)
Q Consensus 52 ~~te~~L~~~F~~~G~v~~v~i~-~~~~~g~~~g~afV~f~-~~~~a~~Al~~l~g~ 106 (253)
.+.+-.|-++..+||.-.+|..- .+...+..-|.-+|++. +.++.++|++.|...
T Consensus 32 ~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 32 SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp CTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred ccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 45556788888888854444221 12223456678888886 456677777766543
No 333
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=22.91 E-value=2.1e+02 Score=20.43 Aligned_cols=49 Identities=8% Similarity=0.128 Sum_probs=37.2
Q ss_pred CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHH-HhhCC
Q 025401 53 CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK-RHMDG 105 (253)
Q Consensus 53 ~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al-~~l~g 105 (253)
...+++.+.+..+-.|..|..+ +|...-++.|.+.+.++....+ +.|..
T Consensus 76 ~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~l~~~l~~ 125 (150)
T 2pn6_A 76 NYHVELGNKLAQIPGVWGVYFV----LGDNDFIVMARYKTREEFMEKFLERVMS 125 (150)
T ss_dssp THHHHHHHHHHTSTTEEEEEEC----SSSCSEEEEEEESSHHHHHHHTHHHHTT
T ss_pred hHHHHHHHHHhcCchhhhhhhh----cCcCCEEEEEEECCHHHHHHHHHHHhcc
Confidence 3456788888899999999886 3444567889999999998887 55543
No 334
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=22.58 E-value=2.2e+02 Score=20.44 Aligned_cols=44 Identities=11% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 56 EDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 56 ~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
+++.+.+..+-.|..|..+. |...-++.|.+.+.++....+..|
T Consensus 82 ~~~~~~l~~~p~V~~~~~~~----G~~d~~~~v~~~~~~~l~~~l~~l 125 (150)
T 2w25_A 82 DDAPARLEHIEEVESCYSVA----GEASYVLLVRVASARALEDLLQRI 125 (150)
T ss_dssp CCHHHHHTTCTTEEEEEEES----SSCSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCeEEEEEeE----CCCCEEEEEEECCHHHHHHHHHHH
Confidence 66888888899999998764 334457788899999888877654
No 335
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.40 E-value=48 Score=22.95 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=15.2
Q ss_pred EcCCCCCCCHHHHHHHh-cccCC
Q 025401 46 VRNLRHDCRPEDIRRPF-EQFGA 67 (253)
Q Consensus 46 V~nLp~~~te~~L~~~F-~~~G~ 67 (253)
|.+|...+|-+||...| ...|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 45788888988877754 44454
No 336
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=22.27 E-value=2.1e+02 Score=20.10 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=29.7
Q ss_pred EEEcCCCCCCCHHHHH-------HHhc----ccCCeeEEEEcccCCCCCCceE-EEEEEcCHHHHHH
Q 025401 44 LLVRNLRHDCRPEDIR-------RPFE----QFGAIKDIYLPRDYYSGEPRGF-GFIQFVEPDDAAE 98 (253)
Q Consensus 44 i~V~nLp~~~te~~L~-------~~F~----~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~ 98 (253)
|.+-.|...++++++. +.|. +.-.|..+.+-.+......--+ .+++|++.++.+.
T Consensus 24 IVlfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~s~~~~yd~~l~~~F~s~e~l~~ 90 (118)
T 3fmb_A 24 IVLFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNPGETWNIALYSEFDNLDDVKF 90 (118)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECCCTTCCCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccCCCCCCceEEEEEEECCHHHHHH
Confidence 4445677788876532 3333 3345666666544322112223 4568999887653
No 337
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=22.27 E-value=42 Score=22.18 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=13.6
Q ss_pred cCCeeEEEEcccCCCCCCceEEEEEEcCH
Q 025401 65 FGAIKDIYLPRDYYSGEPRGFGFIQFVEP 93 (253)
Q Consensus 65 ~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 93 (253)
.|.|+.|... ...|||.|++.
T Consensus 44 LGTI~kV~~~--------~e~ClV~F~D~ 64 (79)
T 2m0o_A 44 LGTIKKVDSA--------REVCLVQFEDD 64 (79)
T ss_dssp EEEEEEEETT--------TTEEEEEETTS
T ss_pred eEEEEEeccC--------CCEEEEEEcCC
Confidence 3566665543 45799999864
No 338
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=22.07 E-value=1.1e+02 Score=22.46 Aligned_cols=47 Identities=9% Similarity=0.170 Sum_probs=28.5
Q ss_pred EcCCCCCCCHHHHHHHhc-ccC--CeeEEEEcccC----------CCCCCceEEEEEEcC
Q 025401 46 VRNLRHDCRPEDIRRPFE-QFG--AIKDIYLPRDY----------YSGEPRGFGFIQFVE 92 (253)
Q Consensus 46 V~nLp~~~te~~L~~~F~-~~G--~v~~v~i~~~~----------~~g~~~g~afV~f~~ 92 (253)
|-.+...++++++.++|. .++ .|..|.|-... ......+|.||.|.+
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 556777899999999995 333 45555432211 112345677787764
No 339
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=21.89 E-value=1.6e+02 Score=18.59 Aligned_cols=44 Identities=5% Similarity=0.028 Sum_probs=35.3
Q ss_pred CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHH
Q 025401 54 RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101 (253)
Q Consensus 54 te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 101 (253)
..+++.+.+..+-+|.+|..+ +|...-++.|.+.+.++.+..+.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~~~ 57 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVV----YGVYDIVVKVEADSMDKLKDFVT 57 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEEC----SSSCSEEEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeEEEEEE----eccCCEEEEEEECCHHHHHHHHH
Confidence 357888889999999999987 44445678888999999888775
No 340
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=21.73 E-value=1e+02 Score=23.76 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=27.0
Q ss_pred HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhh
Q 025401 55 PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 55 e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
-++|+.||..|-.++ .| +.+.+..|.+.+.|.+.|+..
T Consensus 132 l~~i~~fF~~YK~le---------~g--K~v~v~gw~~~~~A~~~I~~~ 169 (173)
T 3d53_A 132 KKRIVHFFEHYKDLE---------KG--KWVKVTGWGDKVKAETLIKEG 169 (173)
T ss_dssp HHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc---------CC--CcEEEccCcCHHHHHHHHHHH
Confidence 467889999884321 12 346788899999999888753
No 341
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=21.44 E-value=1.3e+02 Score=25.90 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=33.0
Q ss_pred EEcCCCCC--CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHH
Q 025401 45 LVRNLRHD--CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101 (253)
Q Consensus 45 ~V~nLp~~--~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 101 (253)
+||||..- -..+.|.++.++||+|..+.+. +.-+|...+.+.++.++.
T Consensus 22 ~iG~~~~~~~~~~~~~~~~~~kYG~i~~~~~~---------~~~~vvv~~~~~i~~il~ 71 (461)
T 3ld6_A 22 FLGHAIAFGKSPIEFLENAYEKYGPVFSFTMV---------GKTFTYLLGSDAAALLFN 71 (461)
T ss_dssp TTBTHHHHHHCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHH
T ss_pred eeeeHHHhhhCHHHHHHHHHHHhCCEEEEEEC---------CccEEEEeCHHHHHHHHh
Confidence 56665421 1245578888999999888774 235677778888887775
No 342
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=21.28 E-value=1.2e+02 Score=23.02 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=26.8
Q ss_pred CCHHHHHHHhcccCCee---EEEEcccCCCCCCceEEEE
Q 025401 53 CRPEDIRRPFEQFGAIK---DIYLPRDYYSGEPRGFGFI 88 (253)
Q Consensus 53 ~te~~L~~~F~~~G~v~---~v~i~~~~~~g~~~g~afV 88 (253)
.++++|.++-.+.|.+. .+.|..+..+|....+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 58899999999999873 5566655447777777765
No 343
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.26 E-value=1e+02 Score=20.79 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=20.0
Q ss_pred CeeEEEEcccCCCCCCceEEEEEEcC
Q 025401 67 AIKDIYLPRDYYSGEPRGFGFIQFVE 92 (253)
Q Consensus 67 ~v~~v~i~~~~~~g~~~g~afV~f~~ 92 (253)
+|++|.|..-...+..++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57777776555567889999999975
No 344
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=21.09 E-value=1.7e+02 Score=18.67 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=35.7
Q ss_pred CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHH
Q 025401 54 RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKR 101 (253)
Q Consensus 54 te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 101 (253)
..+++.+.+..+-+|..|..+. |...-++.|.+.+.++.+..+.
T Consensus 14 ~~~~~~~~l~~~peV~e~~~vt----G~~D~ll~v~~~d~~~l~~~i~ 57 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVVY----GEYDLIVKVETDTLKDLDQFIT 57 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEECB----SSCSEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeeEEEEEc----ccCCEEEEEEECCHHHHHHHHH
Confidence 4578888899999999999874 4445578899999999988875
No 345
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=21.06 E-value=2.1e+02 Score=19.68 Aligned_cols=59 Identities=8% Similarity=0.129 Sum_probs=41.7
Q ss_pred cCCCCCCCHHHHHHHh----------cccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHhhCCCeec
Q 025401 47 RNLRHDCRPEDIRRPF----------EQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRHMDGQVLL 109 (253)
Q Consensus 47 ~nLp~~~te~~L~~~F----------~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 109 (253)
-+||.+++.+++.++- ..-|.+..+.-+ .|.-..++++.-++.++....|..|.-..+.
T Consensus 9 V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWRv----~G~y~nisIfdv~s~~eLh~iL~~LPLfpym 77 (96)
T 1mli_A 9 VKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRI----AGHYANYSVFDVPSVEALHDTLMQLPLFPYM 77 (96)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEEe----cCCccEEEEEEcCCHHHHHHHHHhCCCCceE
Confidence 3788888887755443 356888887665 3445668888888999888887776665544
No 346
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=21.04 E-value=1.3e+02 Score=20.87 Aligned_cols=34 Identities=9% Similarity=0.153 Sum_probs=21.7
Q ss_pred HHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcC
Q 025401 56 EDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVE 92 (253)
Q Consensus 56 ~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 92 (253)
-+|.+.+...| |.+..|..+..+ +.=|+++++.+
T Consensus 27 PEv~~~L~~aG-i~~ysIfl~~~~--~~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLKSHG-AHNYAIYLDKAR--NLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETTT--TEEEEEEEESC
T ss_pred HHHHHHHHHcC-CeEEEEEEECCC--CeEEEEEEEcC
Confidence 46777777776 455555544222 23589999988
No 347
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.03 E-value=2.3e+02 Score=20.24 Aligned_cols=46 Identities=9% Similarity=0.075 Sum_probs=34.3
Q ss_pred HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEE-cCHHHHHHHH-HhhC
Q 025401 55 PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQF-VEPDDAAEAK-RHMD 104 (253)
Q Consensus 55 e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f-~~~~~a~~Al-~~l~ 104 (253)
.+++.+.+..+-.|..|..+. |...-++.|.+ .+.++.+..+ +.|.
T Consensus 82 ~~~~~~~l~~~peV~~~~~vt----G~~d~~~~v~~~~d~~~l~~~~~~~l~ 129 (151)
T 2dbb_A 82 ADKVISEISDIEYVKSVEKGV----GRYNIIVRLLLPKDIKDAENLISEFLQ 129 (151)
T ss_dssp HHHHHHHHTTCTTEEEEEEEE----SSCSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEeEec----CCCCEEEEEEEcCCHHHHHHHHHHHhh
Confidence 456777888888999998873 44445788899 9999888877 4443
No 348
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=20.97 E-value=31 Score=22.58 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.6
Q ss_pred CHHHHHHHhcccCCeeEE
Q 025401 54 RPEDIRRPFEQFGAIKDI 71 (253)
Q Consensus 54 te~~L~~~F~~~G~v~~v 71 (253)
|--||++++.+||.|+.+
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 567899999999987653
No 349
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=20.80 E-value=83 Score=23.65 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=33.8
Q ss_pred EEEcCCCCCCCHHHHHHHhccc-C-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQF-G-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~~-G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
.||.-+....+..+|++.++++ + .|..|..+.-+ .+ .--|||.+..-.+|......
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g--~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TG--NKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--CEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--cEEEEEEcCCCCcHHHHHHh
Confidence 3444466788888888777653 3 45566544332 12 23589999876666655443
No 350
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=20.59 E-value=1.4e+02 Score=25.63 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=29.9
Q ss_pred HHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 55 PEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 55 e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
...|.++.++||.|..+.+.. .-+|.+.+++.++.++..
T Consensus 51 ~~~~~~l~~~YG~i~~~~~g~---------~~~vvv~dp~~~~~il~~ 89 (482)
T 3k9v_A 51 HDTLAEYHKKYGQIFRMKLGS---------FDSVHLGSPSLLEALYRT 89 (482)
T ss_dssp HHHHHHHHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEccCC---------CCEEEEcCHHHHHHHHHh
Confidence 456788899999998887732 356778899988888764
No 351
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=20.57 E-value=2.5e+02 Score=20.38 Aligned_cols=67 Identities=13% Similarity=-0.023 Sum_probs=41.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEcccCCC------------CCCceEEEEEEcCHHHHHHHHHhh
Q 025401 37 GRDLPTSLLVRNLRHDCRPEDIRRPFEQFGAIKDIYLPRDYYS------------GEPRGFGFIQFVEPDDAAEAKRHM 103 (253)
Q Consensus 37 ~~~~~~~i~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~------------g~~~g~afV~f~~~~~a~~Al~~l 103 (253)
+.+....||||+|...-..+.|.++|..+-.+.-+.+-..... +....+-|+.|.+.+++...+...
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a 98 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRC 98 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHCTTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHC
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhCCCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 4455678999999887778888888887754443333211110 001146677777777777666653
No 352
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=20.42 E-value=1.8e+02 Score=19.01 Aligned_cols=43 Identities=7% Similarity=0.275 Sum_probs=34.5
Q ss_pred CHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHH
Q 025401 54 RPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAK 100 (253)
Q Consensus 54 te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 100 (253)
..+++.+.+..+-+|.+|..+ +|..--++.|.+.+.++.+..+
T Consensus 14 ~~~~~~~~l~~~peV~~~~~v----tG~~D~ll~v~~~d~~~l~~~l 56 (92)
T 2djw_A 14 RVQALGEAIAELPQVAEVYSV----TGPYDLVALVRLKDVEELDDVV 56 (92)
T ss_dssp GHHHHHHHHTTSTTEEEEEEE----SSSSSEEEEEEESSGGGHHHHC
T ss_pred CHHHHHHHHhcCCCeEEEEEe----ecCCCEEEEEEECCHHHHHHHH
Confidence 357788889999999999987 4444567888999999888776
No 353
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=20.14 E-value=56 Score=16.22 Aligned_cols=12 Identities=17% Similarity=0.711 Sum_probs=9.6
Q ss_pred HHHHHHHhcccC
Q 025401 55 PEDIRRPFEQFG 66 (253)
Q Consensus 55 e~~L~~~F~~~G 66 (253)
..+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 467889999886
No 354
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=20.07 E-value=88 Score=23.29 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=33.4
Q ss_pred EEEcCCCCCCCHHHHHHHhccc-C-CeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 44 LLVRNLRHDCRPEDIRRPFEQF-G-AIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 44 i~V~nLp~~~te~~L~~~F~~~-G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
.||.-+....+..+|++.++++ + .|..|..+.-+ .+ .--|||.+..-.+|......
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g--~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-NG--TKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-TS--CEEEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--ceEEEEEeCCCCcHHHHHHh
Confidence 3444566778888887777653 3 45566544332 12 23589999876666655443
No 355
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=20.03 E-value=1.5e+02 Score=17.75 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=27.9
Q ss_pred eEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEcccCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025401 43 SLLVRNLRHD-CRPEDIRRPFEQFGAIKDIYLPRDYYSGEPRGFGFIQFVEPDDAAEAKRH 102 (253)
Q Consensus 43 ~i~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 102 (253)
.|+.|.-|-- .++++.+.....| .+-.|-.|.+.++|+.+|..
T Consensus 7 aV~~G~~~GIy~sW~ec~~qV~g~-----------------~ga~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 7 AVRRGRKTGVFLTWNECRAQVDRF-----------------PAARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp EEEESSSCEEESSHHHHHHHHTTC-----------------TTCEEEEESSHHHHHHHHHC
T ss_pred EEEeCCCCceECCHHHHHHHhcCC-----------------CCCccCCCCCHHHHHHHHHh
Confidence 3444444322 4677776655443 34578889999999998864
Done!