Query 025402
Match_columns 253
No_of_seqs 267 out of 730
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:25:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03106 WRKY: WRKY DNA -bindi 100.0 2.7E-33 5.7E-38 204.9 3.4 60 93-154 1-60 (60)
2 smart00774 WRKY DNA binding do 100.0 3.8E-32 8.3E-37 198.9 4.9 59 93-152 1-59 (59)
3 PF04500 FLYWCH: FLYWCH zinc f 96.2 0.0034 7.3E-08 43.4 2.1 52 91-152 10-62 (62)
4 PF03101 FAR1: FAR1 DNA-bindin 94.1 0.058 1.3E-06 40.5 3.4 30 124-154 60-89 (91)
5 COG4026 Uncharacterized protei 90.7 0.64 1.4E-05 43.3 6.1 43 4-46 163-205 (290)
6 PF00170 bZIP_1: bZIP transcri 87.9 3 6.4E-05 30.2 6.7 39 3-41 25-63 (64)
7 PF05377 FlaC_arch: Flagella a 84.9 6.1 0.00013 29.1 7.0 45 2-47 5-49 (55)
8 PF06295 DUF1043: Protein of u 84.0 4.5 9.9E-05 33.5 6.8 43 3-45 31-77 (128)
9 PF06005 DUF904: Protein of un 83.2 7.9 0.00017 29.6 7.3 43 5-47 26-68 (72)
10 PF04201 TPD52: Tumour protein 82.1 4.5 9.7E-05 35.6 6.3 39 3-41 28-66 (162)
11 PRK11677 hypothetical protein; 82.1 5.8 0.00013 33.7 6.8 41 3-43 35-79 (134)
12 TIGR02894 DNA_bind_RsfA transc 79.9 6.3 0.00014 34.7 6.4 36 4-39 111-146 (161)
13 KOG4196 bZIP transcription fac 79.7 6.1 0.00013 33.9 6.1 38 5-42 82-119 (135)
14 PRK00888 ftsB cell division pr 77.6 6.9 0.00015 31.6 5.6 37 2-38 32-68 (105)
15 PF07795 DUF1635: Protein of u 77.4 8.6 0.00019 35.2 6.8 42 4-45 15-60 (214)
16 PHA03155 hypothetical protein; 77.1 3.2 6.9E-05 34.7 3.6 24 6-29 10-33 (115)
17 smart00338 BRLZ basic region l 76.8 12 0.00027 26.9 6.3 38 4-41 26-63 (65)
18 PF05812 Herpes_BLRF2: Herpesv 75.2 4.6 9.9E-05 33.9 4.1 26 5-30 4-29 (118)
19 PHA03162 hypothetical protein; 74.1 4.4 9.6E-05 34.7 3.8 23 6-28 15-37 (135)
20 PF08650 DASH_Dad4: DASH compl 74.0 4.7 0.0001 31.1 3.6 30 6-36 27-56 (72)
21 PF04977 DivIC: Septum formati 72.6 11 0.00023 27.3 5.2 29 3-31 23-51 (80)
22 TIGR00219 mreC rod shape-deter 69.3 6.1 0.00013 36.8 3.9 21 10-30 65-85 (283)
23 PF06156 DUF972: Protein of un 67.5 17 0.00037 29.6 5.7 21 4-24 22-42 (107)
24 KOG4010 Coiled-coil protein TP 67.3 18 0.00038 33.0 6.2 38 4-41 44-81 (208)
25 PF07412 Geminin: Geminin; In 66.5 8.1 0.00018 35.0 4.0 39 4-46 132-170 (200)
26 COG1792 MreC Cell shape-determ 65.7 7.2 0.00016 36.4 3.6 9 126-134 178-186 (284)
27 PRK13922 rod shape-determining 63.8 9.3 0.0002 34.6 3.9 25 5-29 70-94 (276)
28 PF13094 CENP-Q: CENP-Q, a CEN 63.0 36 0.00078 28.6 7.1 44 4-47 41-84 (160)
29 PRK13169 DNA replication intia 61.6 17 0.00036 30.0 4.6 22 4-25 22-43 (110)
30 TIGR02894 DNA_bind_RsfA transc 61.3 39 0.00085 29.8 7.1 38 4-41 104-141 (161)
31 PF15079 DUF4546: Domain of un 61.2 26 0.00056 31.6 6.1 41 2-46 52-92 (205)
32 PRK14127 cell division protein 61.2 21 0.00045 29.5 5.1 37 7-43 33-69 (109)
33 KOG4005 Transcription factor X 60.7 30 0.00066 32.7 6.7 43 2-44 95-137 (292)
34 TIGR03689 pup_AAA proteasome A 59.7 23 0.00049 36.0 6.2 42 6-47 3-44 (512)
35 PF07716 bZIP_2: Basic region 59.4 26 0.00056 24.6 4.8 27 4-30 25-51 (54)
36 PF13815 Dzip-like_N: Iguana/D 59.4 35 0.00076 27.6 6.1 38 3-40 79-116 (118)
37 TIGR03752 conj_TIGR03752 integ 59.3 32 0.00069 35.0 7.0 22 4-25 73-94 (472)
38 PRK13923 putative spore coat p 58.3 42 0.0009 29.8 6.8 38 4-41 111-148 (170)
39 PF15294 Leu_zip: Leucine zipp 57.8 29 0.00063 33.0 6.1 40 7-46 128-174 (278)
40 TIGR02209 ftsL_broad cell divi 56.9 23 0.00051 26.3 4.5 30 3-32 30-59 (85)
41 PF06657 Cep57_MT_bd: Centroso 56.5 45 0.00096 25.7 6.0 41 6-46 19-64 (79)
42 PF11932 DUF3450: Protein of u 56.2 49 0.0011 29.7 7.2 44 3-46 55-98 (251)
43 PF01920 Prefoldin_2: Prefoldi 55.8 27 0.00058 26.5 4.7 41 6-46 64-104 (106)
44 PF13851 GAS: Growth-arrest sp 55.5 45 0.00098 29.6 6.7 40 7-46 44-83 (201)
45 PRK10803 tol-pal system protei 55.3 46 0.00099 30.6 6.9 45 2-46 59-103 (263)
46 PF03112 DUF244: Uncharacteriz 54.4 27 0.00058 30.7 4.9 22 4-25 77-98 (158)
47 PF08826 DMPK_coil: DMPK coile 54.0 68 0.0015 23.9 6.4 38 7-44 14-51 (61)
48 PF09755 DUF2046: Uncharacteri 52.6 40 0.00087 32.5 6.2 40 5-44 255-294 (310)
49 PF06696 Strep_SA_rep: Strepto 52.3 25 0.00054 22.2 3.2 20 4-23 5-24 (25)
50 PF05377 FlaC_arch: Flagella a 51.8 52 0.0011 24.3 5.4 38 3-40 13-50 (55)
51 PF02183 HALZ: Homeobox associ 51.6 50 0.0011 23.1 5.0 28 4-31 12-39 (45)
52 PRK10884 SH3 domain-containing 51.3 62 0.0013 29.1 6.9 17 3-19 99-115 (206)
53 PRK10884 SH3 domain-containing 51.3 61 0.0013 29.2 6.9 34 9-42 130-163 (206)
54 PF13118 DUF3972: Protein of u 51.1 48 0.001 28.2 5.8 29 7-35 81-109 (126)
55 PF11544 Spc42p: Spindle pole 50.7 81 0.0018 24.7 6.6 43 2-44 3-48 (76)
56 PF04999 FtsL: Cell division p 50.6 33 0.00071 26.4 4.5 29 3-31 41-69 (97)
57 PF14645 Chibby: Chibby family 50.5 55 0.0012 27.0 6.0 36 5-40 72-114 (116)
58 PF14775 NYD-SP28_assoc: Sperm 50.4 37 0.0008 25.0 4.5 26 4-29 33-58 (60)
59 COG3105 Uncharacterized protei 48.7 77 0.0017 27.4 6.7 42 3-44 40-85 (138)
60 PF11365 DUF3166: Protein of u 48.1 45 0.00098 27.0 5.0 34 2-35 13-46 (96)
61 TIGR02449 conserved hypothetic 47.9 1.2E+02 0.0026 23.0 7.1 38 3-40 6-43 (65)
62 COG4026 Uncharacterized protei 47.7 73 0.0016 30.1 6.9 41 4-44 135-175 (290)
63 PF04102 SlyX: SlyX; InterPro 47.3 1.2E+02 0.0025 22.6 6.8 47 1-47 1-47 (69)
64 PF07407 Seadorna_VP6: Seadorn 46.9 43 0.00094 33.1 5.6 30 3-32 31-60 (420)
65 PF03127 GAT: GAT domain; Int 46.8 89 0.0019 24.3 6.5 43 5-47 5-63 (100)
66 PF09730 BicD: Microtubule-ass 46.4 59 0.0013 34.7 6.8 43 2-44 39-81 (717)
67 PF08614 ATG16: Autophagy prot 45.3 1E+02 0.0022 26.7 7.3 40 5-44 124-163 (194)
68 PF03859 CG-1: CG-1 domain; I 44.8 8.2 0.00018 32.4 0.3 10 92-101 50-59 (118)
69 TIGR02338 gimC_beta prefoldin, 44.3 98 0.0021 24.6 6.4 41 6-46 69-109 (110)
70 PRK14127 cell division protein 43.4 96 0.0021 25.6 6.3 37 2-38 35-71 (109)
71 PF04111 APG6: Autophagy prote 43.4 97 0.0021 29.3 7.3 34 13-46 80-113 (314)
72 PRK14148 heat shock protein Gr 43.1 92 0.002 28.0 6.7 40 3-42 39-78 (195)
73 TIGR03752 conj_TIGR03752 integ 42.8 77 0.0017 32.3 6.8 31 2-32 64-94 (472)
74 PF10473 CENP-F_leu_zip: Leuci 42.5 1.2E+02 0.0025 26.1 6.9 25 7-31 69-93 (140)
75 PRK13169 DNA replication intia 41.6 83 0.0018 26.0 5.7 36 3-38 7-42 (110)
76 PRK13729 conjugal transfer pil 41.3 64 0.0014 32.9 6.0 41 3-43 82-122 (475)
77 PRK13922 rod shape-determining 39.9 91 0.002 28.2 6.3 20 11-30 69-88 (276)
78 PF08781 DP: Transcription fac 39.1 1E+02 0.0022 26.6 6.1 36 4-39 1-36 (142)
79 PF07875 Coat_F: Coat F domain 39.1 55 0.0012 23.5 3.9 31 18-48 27-57 (64)
80 PF12711 Kinesin-relat_1: Kine 38.5 91 0.002 24.8 5.3 31 4-34 31-67 (86)
81 PF10146 zf-C4H2: Zinc finger- 37.3 1.3E+02 0.0029 27.5 7.0 38 7-44 63-100 (230)
82 PF15619 Lebercilin: Ciliary p 37.0 1.2E+02 0.0026 27.0 6.5 45 3-47 18-65 (194)
83 KOG0999 Microtubule-associated 36.9 62 0.0013 34.1 5.2 25 2-26 112-136 (772)
84 PF00170 bZIP_1: bZIP transcri 36.7 1.2E+02 0.0026 21.7 5.3 25 5-29 34-58 (64)
85 PF14662 CCDC155: Coiled-coil 36.7 1.1E+02 0.0024 27.8 6.1 35 3-37 94-128 (193)
86 PF12325 TMF_TATA_bd: TATA ele 36.7 1.1E+02 0.0025 25.4 5.9 7 8-14 34-40 (120)
87 PF10226 DUF2216: Uncharacteri 36.7 46 0.00099 30.3 3.7 25 4-28 55-79 (195)
88 PF15035 Rootletin: Ciliary ro 36.2 1.1E+02 0.0024 27.0 6.0 36 7-42 84-119 (182)
89 PF01166 TSC22: TSC-22/dip/bun 36.0 70 0.0015 24.0 4.0 19 5-23 15-33 (59)
90 PF05384 DegS: Sensor protein 35.8 1.5E+02 0.0033 25.8 6.7 42 4-45 27-68 (159)
91 PF04111 APG6: Autophagy prote 35.7 1.3E+02 0.0027 28.6 6.7 39 6-44 45-83 (314)
92 COG2770 ResE FOG: HAMP domain 35.4 41 0.00088 25.4 2.8 26 2-27 57-82 (83)
93 KOG1853 LIS1-interacting prote 34.1 1.2E+02 0.0026 29.1 6.3 38 1-38 49-86 (333)
94 PF10168 Nup88: Nuclear pore c 33.5 1.3E+02 0.0027 32.0 6.9 44 4-47 579-622 (717)
95 PF04888 SseC: Secretion syste 33.5 1.8E+02 0.0038 26.8 7.2 43 4-46 244-286 (306)
96 PRK14139 heat shock protein Gr 33.2 1.4E+02 0.0031 26.6 6.3 41 3-43 31-71 (185)
97 PF07106 TBPIP: Tat binding pr 33.0 85 0.0018 26.5 4.7 24 4-27 79-102 (169)
98 PRK15422 septal ring assembly 32.8 1.9E+02 0.0041 22.9 6.2 37 3-39 17-53 (79)
99 PF12325 TMF_TATA_bd: TATA ele 32.4 1.8E+02 0.0039 24.2 6.4 43 5-47 17-59 (120)
100 PF11577 NEMO: NF-kappa-B esse 32.3 1.1E+02 0.0024 23.3 4.7 31 8-38 3-37 (68)
101 PF10198 Ada3: Histone acetylt 32.2 1.5E+02 0.0033 24.9 6.0 34 3-36 39-72 (131)
102 KOG0673 Thymidylate synthase [ 31.9 19 0.00041 34.1 0.6 31 91-121 111-162 (293)
103 PF06005 DUF904: Protein of un 31.7 2.3E+02 0.0051 21.5 7.3 36 4-39 18-53 (72)
104 PLN03097 FHY3 Protein FAR-RED 31.7 44 0.00096 36.1 3.3 32 124-156 159-190 (846)
105 KOG1962 B-cell receptor-associ 31.5 1.3E+02 0.0028 27.7 5.8 39 6-44 153-191 (216)
106 COG4467 Regulator of replicati 31.5 63 0.0014 27.1 3.5 42 2-43 6-47 (114)
107 KOG0288 WD40 repeat protein Ti 31.5 1.1E+02 0.0025 30.9 5.9 25 5-29 49-73 (459)
108 PF15233 SYCE1: Synaptonemal c 31.5 1.4E+02 0.0029 25.8 5.6 38 7-44 37-74 (134)
109 PF04849 HAP1_N: HAP1 N-termin 31.3 1.6E+02 0.0035 28.4 6.7 39 6-44 243-281 (306)
110 PF05659 RPW8: Arabidopsis bro 31.3 47 0.001 28.3 2.8 37 2-38 49-89 (147)
111 PF10211 Ax_dynein_light: Axon 31.0 2.2E+02 0.0047 25.1 7.0 41 6-46 122-162 (189)
112 PF07160 DUF1395: Protein of u 30.9 1.7E+02 0.0038 26.8 6.7 38 2-39 34-71 (243)
113 KOG4191 Histone acetyltransfer 30.9 89 0.0019 32.0 5.1 46 3-49 407-455 (516)
114 PF10805 DUF2730: Protein of u 30.8 1.9E+02 0.0041 23.2 6.1 41 4-44 49-91 (106)
115 cd00632 Prefoldin_beta Prefold 30.6 2.1E+02 0.0047 22.3 6.3 38 7-44 66-103 (105)
116 PF07526 POX: Associated with 29.9 1.5E+02 0.0032 25.3 5.6 35 12-46 71-105 (140)
117 PRK09413 IS2 repressor TnpA; R 29.8 1E+02 0.0022 24.8 4.4 18 8-25 75-92 (121)
118 PF15058 Speriolin_N: Sperioli 29.7 89 0.0019 28.5 4.4 38 7-45 8-45 (200)
119 PF09726 Macoilin: Transmembra 29.5 1.4E+02 0.0031 31.6 6.5 45 2-46 423-481 (697)
120 PF04420 CHD5: CHD5-like prote 29.4 1.9E+02 0.0041 24.7 6.2 37 4-40 40-88 (161)
121 PRK14162 heat shock protein Gr 29.3 1.8E+02 0.004 26.1 6.3 40 4-43 39-78 (194)
122 PF14282 FlxA: FlxA-like prote 28.8 2E+02 0.0043 23.1 5.9 45 3-47 25-73 (106)
123 PF04012 PspA_IM30: PspA/IM30 28.8 2.6E+02 0.0056 24.4 7.1 45 3-47 97-141 (221)
124 PF14662 CCDC155: Coiled-coil 28.7 2.2E+02 0.0049 25.8 6.8 38 4-41 22-59 (193)
125 PF03962 Mnd1: Mnd1 family; I 28.6 2.1E+02 0.0046 25.1 6.6 29 15-43 139-167 (188)
126 PF10224 DUF2205: Predicted co 28.5 1.8E+02 0.0038 22.8 5.4 36 6-48 32-67 (80)
127 PF12017 Tnp_P_element: Transp 27.8 1.6E+02 0.0034 27.2 5.7 35 4-38 18-52 (236)
128 KOG2010 Double stranded RNA bi 27.7 2.1E+02 0.0045 28.5 6.8 45 2-46 152-196 (405)
129 COG3879 Uncharacterized protei 27.6 2.3E+02 0.0049 26.7 6.8 41 4-44 57-101 (247)
130 smart00574 POX domain associat 27.5 1.8E+02 0.0038 25.3 5.6 35 12-46 71-105 (140)
131 PRK14143 heat shock protein Gr 27.4 2E+02 0.0044 26.5 6.5 40 4-43 67-106 (238)
132 PF13851 GAS: Growth-arrest sp 27.4 2.8E+02 0.0061 24.6 7.2 43 4-46 93-135 (201)
133 PF11594 Med28: Mediator compl 27.3 2.2E+02 0.0049 23.6 6.0 40 8-47 39-78 (106)
134 PF12107 VEK-30: Plasminogen ( 27.3 54 0.0012 19.1 1.7 12 10-21 2-13 (17)
135 PRK09343 prefoldin subunit bet 27.1 2.7E+02 0.0059 22.7 6.5 42 7-48 74-115 (121)
136 PF12808 Mto2_bdg: Micro-tubul 26.5 1.2E+02 0.0025 22.1 3.8 24 7-30 25-48 (52)
137 COG3352 FlaC Putative archaeal 26.5 2.3E+02 0.0051 25.0 6.3 40 4-43 72-111 (157)
138 PRK14160 heat shock protein Gr 26.5 2.4E+02 0.0052 25.7 6.6 39 6-44 56-94 (211)
139 PF14645 Chibby: Chibby family 25.9 1.4E+02 0.0031 24.6 4.7 28 8-35 68-95 (116)
140 PF04822 Takusan: Takusan; In 25.7 2.8E+02 0.0061 21.9 6.1 42 4-45 19-69 (84)
141 PF15290 Syntaphilin: Golgi-lo 25.3 1.9E+02 0.0042 28.0 6.0 36 13-48 119-158 (305)
142 PF06156 DUF972: Protein of un 25.2 3.8E+02 0.0081 21.8 7.0 38 2-39 6-43 (107)
143 PF09738 DUF2051: Double stran 25.1 2.7E+02 0.0058 26.7 7.0 42 3-44 118-159 (302)
144 PF07106 TBPIP: Tat binding pr 25.1 1.8E+02 0.004 24.5 5.4 34 12-45 73-106 (169)
145 TIGR03495 phage_LysB phage lys 24.9 3.2E+02 0.0069 23.3 6.7 46 3-48 46-91 (135)
146 smart00340 HALZ homeobox assoc 24.9 1.5E+02 0.0033 21.1 3.9 24 7-30 8-31 (44)
147 PF05565 Sipho_Gp157: Siphovir 24.7 2.7E+02 0.0059 23.7 6.4 43 6-48 49-91 (162)
148 PF08317 Spc7: Spc7 kinetochor 24.6 2.8E+02 0.006 26.1 7.0 24 5-28 210-233 (325)
149 PF08317 Spc7: Spc7 kinetochor 24.6 3E+02 0.0064 25.9 7.2 43 4-46 156-198 (325)
150 cd00890 Prefoldin Prefoldin is 24.4 2.9E+02 0.0063 21.5 6.1 39 6-44 89-127 (129)
151 PRK03947 prefoldin subunit alp 24.2 2.3E+02 0.0051 23.0 5.7 34 11-44 6-39 (140)
152 PF05546 She9_MDM33: She9 / Md 24.1 3.4E+02 0.0074 24.9 7.1 47 2-48 37-83 (207)
153 smart00787 Spc7 Spc7 kinetocho 24.1 3E+02 0.0064 26.3 7.1 44 4-47 151-194 (312)
154 KOG3894 SNARE protein Syntaxin 24.0 1.8E+02 0.004 28.3 5.6 34 11-44 211-244 (316)
155 KOG2751 Beclin-like protein [S 23.9 1.9E+02 0.0041 29.4 5.9 42 5-46 177-218 (447)
156 PRK14163 heat shock protein Gr 23.9 2.4E+02 0.0052 25.8 6.2 40 4-43 40-79 (214)
157 PF11559 ADIP: Afadin- and alp 23.9 2.8E+02 0.006 22.9 6.2 33 7-39 55-87 (151)
158 PRK14140 heat shock protein Gr 23.8 2.7E+02 0.0059 24.9 6.4 38 5-42 38-75 (191)
159 PF13870 DUF4201: Domain of un 23.5 3.6E+02 0.0079 22.9 6.9 42 3-44 90-131 (177)
160 PRK14160 heat shock protein Gr 23.4 3E+02 0.0065 25.1 6.7 42 3-44 60-101 (211)
161 COG1730 GIM5 Predicted prefold 23.3 2.7E+02 0.0059 24.0 6.1 43 6-48 96-138 (145)
162 PF11932 DUF3450: Protein of u 23.2 3.5E+02 0.0075 24.3 7.1 42 4-45 49-90 (251)
163 PF14988 DUF4515: Domain of un 22.9 2.8E+02 0.0061 24.9 6.4 37 9-45 154-190 (206)
164 PF09789 DUF2353: Uncharacteri 22.5 2.5E+02 0.0054 27.3 6.3 41 6-46 11-51 (319)
165 PF05064 Nsp1_C: Nsp1-like C-t 22.5 2.7E+02 0.0057 22.6 5.6 37 4-40 57-93 (116)
166 PF07888 CALCOCO1: Calcium bin 22.4 3E+02 0.0064 28.7 7.1 17 7-23 174-190 (546)
167 PRK14154 heat shock protein Gr 22.4 2.5E+02 0.0054 25.6 5.9 38 5-42 53-90 (208)
168 PRK03947 prefoldin subunit alp 22.2 3.6E+02 0.0078 21.9 6.4 42 6-47 96-137 (140)
169 PRK05771 V-type ATP synthase s 22.2 2.9E+02 0.0063 28.4 7.1 43 4-46 215-257 (646)
170 PF07544 Med9: RNA polymerase 22.1 1.9E+02 0.0042 22.1 4.5 26 7-32 55-80 (83)
171 PRK14161 heat shock protein Gr 21.9 2.6E+02 0.0056 24.7 5.8 37 6-42 21-57 (178)
172 PF09457 RBD-FIP: FIP domain ; 21.9 1.9E+02 0.0042 20.6 4.1 23 8-30 4-33 (48)
173 KOG0804 Cytoplasmic Zn-finger 21.9 2.7E+02 0.0058 28.6 6.5 42 5-46 390-449 (493)
174 PF11853 DUF3373: Protein of u 21.6 63 0.0014 33.0 2.2 23 5-27 32-54 (489)
175 PF11559 ADIP: Afadin- and alp 21.6 4.4E+02 0.0096 21.7 6.9 15 29-43 91-105 (151)
176 PRK14158 heat shock protein Gr 21.6 3.4E+02 0.0074 24.4 6.6 39 4-42 40-78 (194)
177 KOG0956 PHD finger protein AF1 21.5 77 0.0017 34.2 2.8 35 5-39 648-682 (900)
178 smart00502 BBC B-Box C-termina 21.4 3.6E+02 0.0079 20.3 6.8 41 4-44 7-47 (127)
179 PF10174 Cast: RIM-binding pro 21.4 2.3E+02 0.005 30.6 6.3 39 4-42 364-402 (775)
180 PF02996 Prefoldin: Prefoldin 21.2 3.6E+02 0.0078 20.9 6.0 39 7-45 80-118 (120)
181 PF15066 CAGE1: Cancer-associa 21.0 2.5E+02 0.0054 29.0 6.1 42 7-48 400-441 (527)
182 PF04880 NUDE_C: NUDE protein, 21.0 49 0.0011 29.2 1.1 6 8-13 18-23 (166)
183 PF10224 DUF2205: Predicted co 20.8 4.2E+02 0.0091 20.8 7.5 31 2-32 35-65 (80)
184 PF08614 ATG16: Autophagy prot 20.6 4.5E+02 0.0099 22.7 7.1 38 5-42 117-154 (194)
185 PF12777 MT: Microtubule-bindi 20.6 1.4E+02 0.003 28.3 4.2 33 6-38 230-262 (344)
186 PF00038 Filament: Intermediat 20.4 4.3E+02 0.0094 24.0 7.2 28 10-37 208-235 (312)
187 PRK14155 heat shock protein Gr 20.3 2.3E+02 0.005 25.7 5.3 39 5-43 14-52 (208)
188 PRK13979 DNA topoisomerase IV 20.3 2.3E+02 0.0049 31.3 6.1 47 3-49 445-491 (957)
189 TIGR01063 gyrA DNA gyrase, A s 20.3 2.6E+02 0.0056 30.0 6.4 47 3-49 426-472 (800)
190 PF04156 IncA: IncA protein; 20.3 4.2E+02 0.0091 22.4 6.7 29 7-35 91-119 (191)
191 PF12711 Kinesin-relat_1: Kine 20.2 2.9E+02 0.0064 22.0 5.2 21 6-26 46-66 (86)
192 COG1729 Uncharacterized protei 20.1 2.3E+02 0.0049 26.8 5.3 17 8-24 60-76 (262)
No 1
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=99.97 E-value=2.7e-33 Score=204.86 Aligned_cols=60 Identities=55% Similarity=1.113 Sum_probs=52.1
Q ss_pred ccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCCC
Q 025402 93 VKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDV 154 (253)
Q Consensus 93 ~~DGy~WRKYGQK~ikg~~~PRsYYRCs~~~~gC~akKqVQr~~~D~~~~~vtY~G~HnH~~ 154 (253)
++|||+|||||||.|+|+++||+||||++. ||+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus 1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~--~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k 60 (60)
T PF03106_consen 1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP--GCPAKKQVQRSADDPNIVIVTYEGEHNHPK 60 (60)
T ss_dssp --SSS-EEEEEEEEETTTTCEEEEEEEECT--TEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred CCCCCchhhccCcccCCCceeeEeeecccc--ChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence 589999999999999999999999999997 799999999999999999999999999973
No 2
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=99.97 E-value=3.8e-32 Score=198.86 Aligned_cols=59 Identities=59% Similarity=1.133 Sum_probs=56.0
Q ss_pred ccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCC
Q 025402 93 VKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNH 152 (253)
Q Consensus 93 ~~DGy~WRKYGQK~ikg~~~PRsYYRCs~~~~gC~akKqVQr~~~D~~~~~vtY~G~HnH 152 (253)
++|||+|||||||.|+|+++||+||||++.+ ||+|+|+|||+++|+.+++|||+|+|||
T Consensus 1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~-~C~a~K~Vq~~~~d~~~~~vtY~g~H~h 59 (59)
T smart00774 1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQ-GCPAKKQVQRSDDDPSVVEVTYEGEHTH 59 (59)
T ss_pred CCCcccccccCcEecCCCcCcceEEeccccC-CCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence 4799999999999999999999999999943 6999999999999999999999999998
No 3
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.
Probab=96.19 E-value=0.0034 Score=43.44 Aligned_cols=52 Identities=33% Similarity=0.558 Sum_probs=28.1
Q ss_pred ccccCCccccccCccccCCCCCCcceeecccCCC-CCcccccceeecCCCcEEEEEeccccCC
Q 025402 91 LIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS-GCPVKKKVQRCMEDKSFLVATYEGEHNH 152 (253)
Q Consensus 91 ~~~~DGy~WRKYGQK~ikg~~~PRsYYRCs~~~~-gC~akKqVQr~~~D~~~~~vtY~G~HnH 152 (253)
.++-|||.-+++... ....|+||+.... +|+|+=.+. .++. . ++...++|||
T Consensus 10 ~L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~-~~~~~~~HnH 62 (62)
T PF04500_consen 10 KLVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-R-VVRTNGEHNH 62 (62)
T ss_dssp EEEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-E-EEE-S---SS
T ss_pred EEEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-E-EEECCCccCC
Confidence 467899988776554 3468999998753 799988777 3344 3 3344499998
No 4
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=94.14 E-value=0.058 Score=40.47 Aligned_cols=30 Identities=33% Similarity=0.627 Sum_probs=26.2
Q ss_pred CCCcccccceeecCCCcEEEEEeccccCCCC
Q 025402 124 SGCPVKKKVQRCMEDKSFLVATYEGEHNHDV 154 (253)
Q Consensus 124 ~gC~akKqVQr~~~D~~~~~vtY~G~HnH~~ 154 (253)
.||+|+=.|-+.. |+...++.+..+|||+.
T Consensus 60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L 89 (91)
T PF03101_consen 60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPL 89 (91)
T ss_pred cCCCEEEEEEEcc-CCEEEEEECcCCcCCCC
Confidence 4799999998866 77788899999999987
No 5
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.68 E-value=0.64 Score=43.34 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
-|++.++++|.++..||-+|.+|+..+...|..|+.+|.++-.
T Consensus 163 ~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 163 AEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 3556777778888889999999999999999999999998854
No 6
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=87.92 E-value=3 Score=30.16 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 41 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 41 (253)
..+++.|+.++..+..||..|..-+..+-..+..|..++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 367889999999999999999999999999999888764
No 7
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=84.92 E-value=6.1 Score=29.11 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
+++++..+...+.-++.||+.|++-|+.+.++-..|-+ |.+++.+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~-lYE~Vs~ 49 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLLS-LYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHc
Confidence 46788888899999999999999999999888876654 4455444
No 8
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=84.00 E-value=4.5 Score=33.46 Aligned_cols=43 Identities=9% Similarity=0.261 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNEN----LRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~r----L~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
+.||+..+.||.+.+.|... =.++|..|.++|..|..||.+--
T Consensus 31 ~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a 77 (128)
T PF06295_consen 31 EQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGA 77 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777766554 33488889999999999997653
No 9
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.19 E-value=7.9 Score=29.56 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
|++.|+++-....+||..|+.-..++...+.+.+.+|..++.+
T Consensus 26 e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 26 ENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555544455557777777778888888888888877653
No 10
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=82.11 E-value=4.5 Score=35.61 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 41 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 41 (253)
+.|-+.|+.||.+|.+|-..|+..|..-...+..|+..|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 457789999999999999999999999988888888775
No 11
>PRK11677 hypothetical protein; Provisional
Probab=82.08 E-value=5.8 Score=33.68 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQN----ENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN----~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
+.||+..+.||++.+.|. -+-.++|+.|.++|..|..||..
T Consensus 35 e~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 35 QYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666655554 35678899999999999999965
No 12
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.93 E-value=6.3 Score=34.68 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 39 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 39 (253)
.|++.|+.+++.+..||.+|..-+..+.++|.+|-.
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777777778888887654
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=79.71 E-value=6.1 Score=33.89 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
|-..|..||+++.+||-+|..=|+..-.+|.+|+.-.+
T Consensus 82 ~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 82 EKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34568899999999999999999999999999998555
No 14
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=77.64 E-value=6.9 Score=31.55 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 38 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 38 (253)
+..|++.+++|+.+++.+|++|+.-+..+.++...+.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 3468889999999999999999999888876544333
No 15
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=77.45 E-value=8.6 Score=35.20 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=37.2
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402 4 LQMKL----LQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 4 ~el~~----l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
.||+. ..+||+|..++..+|..+|...+..-...|.|+..++
T Consensus 15 lELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 15 LELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46776 7899999999999999999999988888888888877
No 16
>PHA03155 hypothetical protein; Provisional
Probab=77.12 E-value=3.2 Score=34.74 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
+|.|++||.|++-||+.|+.-|.+
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 789999999999999999987754
No 17
>smart00338 BRLZ basic region leucin zipper.
Probab=76.77 E-value=12 Score=26.92 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 41 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 41 (253)
..+..|+.++..+..||..|..-++.+...+..|..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999988888887777654
No 18
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=75.22 E-value=4.6 Score=33.90 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~ 30 (253)
=++.|.+||.+++-||+.|+.-|..-
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 47899999999999999999766543
No 19
>PHA03162 hypothetical protein; Provisional
Probab=74.15 E-value=4.4 Score=34.71 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
||.|.+||.+++-||+.|+.-|.
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999998773
No 20
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=74.00 E-value=4.7 Score=31.14 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCND 36 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~ 36 (253)
+..|-.+|+++...|..| +++.+|+++|..
T Consensus 27 v~~lN~~l~eIn~~N~~l-e~~~qm~enY~~ 56 (72)
T PF08650_consen 27 VAELNQELEEINRANKNL-EIVAQMWENYQR 56 (72)
T ss_pred HHHHHHHHHHHHHccccH-HHHHHHHHHHHH
Confidence 456888999999999999 999999999964
No 21
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=72.65 E-value=11 Score=27.33 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMN 31 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~ 31 (253)
..|+..|+.++..+++||++|..-+..+.
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999998883
No 22
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=69.28 E-value=6.1 Score=36.77 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025402 10 QAKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 10 ~~EL~rv~eEN~rL~~mL~~~ 30 (253)
-.++.++.+||++|++-|..+
T Consensus 65 ~~~~~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 65 LKDVNNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777665554
No 23
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.46 E-value=17 Score=29.64 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLR 24 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~ 24 (253)
.+++.|+..+..+-|||.+|+
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554
No 24
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=67.26 E-value=18 Score=33.01 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 41 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 41 (253)
-|-+.|..||.+|.||--.|+..|.+-...+..|...|
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999888887777654
No 25
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=66.50 E-value=8.1 Score=35.03 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
.+++.+.+|+.++++||..|.++.+++ ..|..-|-.++.
T Consensus 132 ~~ie~~~eEi~~lk~en~~L~elae~~----~~la~~ie~l~~ 170 (200)
T PF07412_consen 132 KEIEQKDEEIAKLKEENEELKELAEHV----QYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHH----HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence 467788888888888888888876655 444444445544
No 26
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=65.69 E-value=7.2 Score=36.41 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=3.9
Q ss_pred Cccccccee
Q 025402 126 CPVKKKVQR 134 (253)
Q Consensus 126 C~akKqVQr 134 (253)
|.+--+++|
T Consensus 178 ~~i~v~i~r 186 (284)
T COG1792 178 SKIPVKINR 186 (284)
T ss_pred cceeEEecc
Confidence 444444444
No 27
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=63.76 E-value=9.3 Score=34.57 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
....|.+|-+++++||.+|+.-+..
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~ 94 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQE 94 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666555553
No 28
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=62.99 E-value=36 Score=28.59 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
..++.|++|+.++..+.++-.+.|..+-.+..++...+.+...+
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45668999999999999999999999999999999988877654
No 29
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=61.56 E-value=17 Score=30.03 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRH 25 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~ 25 (253)
.|++.|+..|..+-|||.+|+.
T Consensus 22 ~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666655554
No 30
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=61.28 E-value=39 Score=29.82 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 41 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 41 (253)
.|.+.|+.|+..++++|+.|..-+..+......++.-.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666665555555555443
No 31
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=61.23 E-value=26 Score=31.61 Aligned_cols=41 Identities=7% Similarity=0.242 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
++|||..+++||.+-.||-++++...+ .+|..|+. |+++|.
T Consensus 52 LkNeLREVREELkEKmeEIKQIKdiMD---KDFDKL~E-FVEIMK 92 (205)
T PF15079_consen 52 LKNELREVREELKEKMEEIKQIKDIMD---KDFDKLHE-FVEIMK 92 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHH-HHHHHH
Confidence 468888888888888888888876544 56777764 566654
No 32
>PRK14127 cell division protein GpsB; Provisional
Probab=61.23 E-value=21 Score=29.46 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
..+..+++.+..||.+|++-+..+-+.-..++.++..
T Consensus 33 d~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 33 DDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455555555555555555554444555555543
No 33
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=60.72 E-value=30 Score=32.73 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
|+.|+..|++|=+++..||.+|++.=.-+..+-+.|.+.|..+
T Consensus 95 me~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 95 MEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5678888888888899999888887777776666676665533
No 34
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=59.74 E-value=23 Score=36.03 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
+..|+.++..+.+.|+||.++|.........|+.+|..+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p 44 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQP 44 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 567899999999999999999999999999999999998654
No 35
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=59.44 E-value=26 Score=24.60 Aligned_cols=27 Identities=19% Similarity=0.403 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~ 30 (253)
..+..|+.++..+.+||..|...+..+
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999999999998877765
No 36
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=59.36 E-value=35 Score=27.63 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLAR 40 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~ 40 (253)
..+++.|++++....+++++|+..+....+.-..|+..
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 79 SSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999988888887777653
No 37
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=59.30 E-value=32 Score=34.98 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRH 25 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~ 25 (253)
.|++.|..|=+++++||++|+.
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555566666655
No 38
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=58.31 E-value=42 Score=29.80 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 41 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 41 (253)
.+++.|+.+.+....||++|+.=+..+.++|.+|-..+
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im 148 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIM 148 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999987643
No 39
>PF15294 Leu_zip: Leucine zipper
Probab=57.80 E-value=29 Score=32.96 Aligned_cols=40 Identities=25% Similarity=0.522 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHh
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQC-------NDLLARIHEANR 46 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y-------~~Lq~~l~~~~~ 46 (253)
+.|..|..|+++||.+|++-|..+...| ..|+.+|.++-.
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999777655444 667888887754
No 40
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=56.94 E-value=23 Score=26.27 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNN 32 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~ 32 (253)
..|++.++.|+...++||.+|+.-+..+.+
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467888889999999999999888887654
No 41
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=56.47 E-value=45 Score=25.73 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHh
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMN-----NQCNDLLARIHEANR 46 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~-----~~y~~Lq~~l~~~~~ 46 (253)
+..|+.||.+++-|-..|..++..+- .....|..+|..++.
T Consensus 19 l~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~ 64 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVK 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 57889999999999999988888774 455667666666653
No 42
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=56.15 E-value=49 Score=29.73 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
..|++.|+.|++.+...|++|...++.....-..|+.++.++..
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777778888888777777777777777666643
No 43
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=55.79 E-value=27 Score=26.55 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
++.|++++..+.++-.+|...+..+.+.+..++..|.+++.
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~ 104 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFG 104 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788889999999999999999999999999988876654
No 44
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=55.52 E-value=45 Score=29.61 Aligned_cols=40 Identities=10% Similarity=0.263 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
+..+.+|..+..||++|++=|......-..|+.++..+-.
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455577788889999999998888888888887776643
No 45
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=55.29 E-value=46 Score=30.59 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
|..+++.|+.|+.+++-.++++..-|+.+.+.-..|...|-....
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788888888888888888777777777666666666665543
No 46
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=54.36 E-value=27 Score=30.71 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRH 25 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~ 25 (253)
.|++.|+.||++++.||++.+.
T Consensus 77 ~EI~~lq~ElnKiqnEn~k~ek 98 (158)
T PF03112_consen 77 MEIDSLQTELNKIQNENKKREK 98 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 5788999999999999998743
No 47
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=54.03 E-value=68 Score=23.92 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
..+.+||.+|++.|..+..-|...-..-..|..+|..+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999988888777777777766655
No 48
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=52.57 E-value=40 Score=32.52 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
.+.....|...+.+||++|..-|..-.+.+.+|-.||.+.
T Consensus 255 k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lses 294 (310)
T PF09755_consen 255 KMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSES 294 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999999999988765
No 49
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=52.26 E-value=25 Score=22.16 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENL 23 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL 23 (253)
.-|..-++||.||+++|...
T Consensus 5 akla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 5 AKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 34678899999999999864
No 50
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=51.79 E-value=52 Score=24.27 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLAR 40 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~ 40 (253)
...+..++.|+..++++..+|.+-+..+.+-|...-.+
T Consensus 13 ~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~ 50 (55)
T PF05377_consen 13 ESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQ 50 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45678899999999999999999998888888765443
No 51
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.55 E-value=50 Score=23.09 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMN 31 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~ 31 (253)
..-+.|.++-.++..||.+|+..+..+.
T Consensus 12 ~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 12 ASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777777777777776654
No 52
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.33 E-value=62 Score=29.12 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQ 19 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eE 19 (253)
+.|++.|++||..+..+
T Consensus 99 e~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 34555555555554333
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.26 E-value=61 Score=29.17 Aligned_cols=34 Identities=6% Similarity=0.235 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 9 LQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 9 l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
+..+..++.+||++|++-|...-..=..|+.++.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555555555555554444444444433
No 54
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=51.15 E-value=48 Score=28.20 Aligned_cols=29 Identities=14% Similarity=0.270 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCN 35 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~ 35 (253)
.+..+=++-+++||+=|++.|-.+-+.|.
T Consensus 81 ~aKdETI~~lk~EN~fLKeAl~s~QE~y~ 109 (126)
T PF13118_consen 81 DAKDETIEALKNENRFLKEALYSMQELYE 109 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556688899999999999999999993
No 55
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=50.72 E-value=81 Score=24.75 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAM---NNQCNDLLARIHEA 44 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~---~~~y~~Lq~~l~~~ 44 (253)
++.|-..|..+|..-.+|..||+..++.+ .-+|..|-.+|.+-
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~ 48 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQ 48 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888888776654 46777777766543
No 56
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=50.64 E-value=33 Score=26.39 Aligned_cols=29 Identities=17% Similarity=0.501 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMN 31 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~ 31 (253)
..|++.++.|..++.+||++|+--+..+.
T Consensus 41 ~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 41 FYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36778888888888888888887666654
No 57
>PF14645 Chibby: Chibby family
Probab=50.50 E-value=55 Score=27.00 Aligned_cols=36 Identities=11% Similarity=0.177 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENL-------RHLVKAMNNQCNDLLAR 40 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL-------~~mL~~~~~~y~~Lq~~ 40 (253)
+...|+.|..++.|||.-| =+||+.....++.++++
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~ 114 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKE 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555554 46666666666655554
No 58
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=50.38 E-value=37 Score=25.00 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
.+-..|..|-..+..+|..|+.+|.+
T Consensus 33 ~~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 33 LDRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55678889999999999999998865
No 59
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.69 E-value=77 Score=27.37 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNE----NLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~----rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
..||+.++..|..-+.|.. +=.+||..|..+|..|+.|+..-
T Consensus 40 q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dYqklyqHmA~s 85 (138)
T COG3105 40 QYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDYQKLYQHMAKS 85 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3577777777776666653 45789999999999999998764
No 60
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=48.10 E-value=45 Score=27.04 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCN 35 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~ 35 (253)
++.|.+.|.-.|..+-++|++|+.=|...-..|.
T Consensus 13 vEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 13 VEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678888888999999999999987776544443
No 61
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=47.86 E-value=1.2e+02 Score=22.96 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLAR 40 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~ 40 (253)
...++.|..-.+++++||..|+.-+..+...-..|...
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999988876655555443
No 62
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=47.72 E-value=73 Score=30.11 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
.-.+.++++|....+||..|..-|..+-..|+.+|..|-.+
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777788888888888888888888888777665
No 63
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.29 E-value=1.2e+02 Score=22.58 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 1 MMILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 1 ~~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
||+..+..|+..|-....-...|...+..--..-..|+.++..+..+
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777666666666666666555556666666655443
No 64
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=46.94 E-value=43 Score=33.08 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNN 32 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~ 32 (253)
++|...|+.|=.+++.||..|+.-|+++.+
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888777766633
No 65
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=46.81 E-value=89 Score=24.30 Aligned_cols=43 Identities=19% Similarity=0.388 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHhHHHHHHHHHHHHhc
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKA----------------MNNQCNDLLARIHEANRT 47 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~----------------~~~~y~~Lq~~l~~~~~~ 47 (253)
+++.+..||..|+.--.-|.+||.. +...|..+|..|+.++..
T Consensus 5 ~~~k~~~~l~~v~~~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~ 63 (100)
T PF03127_consen 5 QVSKRRSELEKVKNNAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEE 63 (100)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999988999999875 356788889999998865
No 66
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=46.37 E-value=59 Score=34.67 Aligned_cols=43 Identities=26% Similarity=0.449 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
+.+|+..++.+|.++..||.||......+.+.+..|..+...+
T Consensus 39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~l 81 (717)
T PF09730_consen 39 LENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRL 81 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888899999999999999999998888877666554443
No 67
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.31 E-value=1e+02 Score=26.75 Aligned_cols=40 Identities=8% Similarity=0.215 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
++..|+.++....++.+.+...+..+.+-|.+|+.++..+
T Consensus 124 ~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~ 163 (194)
T PF08614_consen 124 ELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML 163 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555556677777777776554
No 68
>PF03859 CG-1: CG-1 domain; InterPro: IPR005559 CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein []. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin-binding domain and ankyrins [].; GO: 0005516 calmodulin binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.78 E-value=8.2 Score=32.42 Aligned_cols=10 Identities=70% Similarity=1.408 Sum_probs=8.0
Q ss_pred cccCCccccc
Q 025402 92 IVKDGHQWRK 101 (253)
Q Consensus 92 ~~~DGy~WRK 101 (253)
--.|||.|||
T Consensus 50 fRkDG~~WrK 59 (118)
T PF03859_consen 50 FRKDGHNWRK 59 (118)
T ss_pred hhcccceeEE
Confidence 3479999995
No 69
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.25 E-value=98 Score=24.60 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
+..|+..++.+.++-++|...+..+.+.+..+|.+|.++++
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35788888888999999999999999999999999988864
No 70
>PRK14127 cell division protein GpsB; Provisional
Probab=43.38 E-value=96 Score=25.57 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 38 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 38 (253)
|+.+++.|..|+.++++||++|+.-|..+...-...+
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5677888899999999999999988887765444433
No 71
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.38 E-value=97 Score=29.35 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 13 LEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 13 L~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
|..+.+|-++|.+.-......|+.++.++.++.+
T Consensus 80 l~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~ 113 (314)
T PF04111_consen 80 LEELEEELEELDEEEEEYWREYNELQLELIEFQE 113 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333445566666666665544
No 72
>PRK14148 heat shock protein GrpE; Provisional
Probab=43.13 E-value=92 Score=27.98 Aligned_cols=40 Identities=5% Similarity=0.135 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
..+++.|+++|....+|...|++.+-+....|..++.+..
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777766666666655555443
No 73
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.79 E-value=77 Score=32.31 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNN 32 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~ 32 (253)
++-++..++.||..+..+|++|+.-.+++-.
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999988887755
No 74
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=42.48 E-value=1.2e+02 Score=26.06 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMN 31 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~ 31 (253)
..|..||.-+++|+..|..||..+-
T Consensus 69 ~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 69 NQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555544444443
No 75
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=41.65 E-value=83 Score=25.96 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 38 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 38 (253)
++.+..|+.-|..+.+|-..|+..|..+.+.=.+|+
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~ 42 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALR 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666655544444
No 76
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.33 E-value=64 Score=32.87 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
+.+++.|+.|++.++..++.|...|..+-+.-..|+.|+..
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666677666677777888888888888888888743
No 77
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=39.94 E-value=91 Score=28.22 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025402 11 AKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 11 ~EL~rv~eEN~rL~~mL~~~ 30 (253)
..+.++.+||++|+.-+..+
T Consensus 69 ~~~~~l~~en~~L~~e~~~l 88 (276)
T PRK13922 69 ASLFDLREENEELKKELLEL 88 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666777666655544
No 78
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=39.11 E-value=1e+02 Score=26.65 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 39 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 39 (253)
.+++.|++|..+..+.-++=+..|..+...+.+||+
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~kn 36 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQELILQQVAFKN 36 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999998888888888888888888888887
No 79
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=39.09 E-value=55 Score=23.48 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Q 025402 18 KQNENLRHLVKAMNNQCNDLLARIHEANRTY 48 (253)
Q Consensus 18 eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 48 (253)
.-|..|+..|..+...+...|.+|+++|.+.
T Consensus 27 ~~np~lR~~l~~~~~~~~~~~~~l~~~m~~k 57 (64)
T PF07875_consen 27 CANPELRQILQQILNECQQMQYELFNYMNQK 57 (64)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4588999999999999999999999999864
No 80
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=38.51 E-value=91 Score=24.83 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=21.6
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhH
Q 025402 4 LQMKLLQA------KLEHVRKQNENLRHLVKAMNNQC 34 (253)
Q Consensus 4 ~el~~l~~------EL~rv~eEN~rL~~mL~~~~~~y 34 (253)
.|++.|++ |+.|--.||.+|++.|.++-+-|
T Consensus 31 eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 31 EEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 45566678888888888876666
No 81
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.25 E-value=1.3e+02 Score=27.50 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
..|+..+.+..+|..+..+++.++.+.|..|..++-++
T Consensus 63 n~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 63 NTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666666666665555
No 82
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=37.01 E-value=1.2e+02 Score=26.97 Aligned_cols=45 Identities=27% Similarity=0.331 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHhc
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKA---MNNQCNDLLARIHEANRT 47 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~---~~~~y~~Lq~~l~~~~~~ 47 (253)
.+++..|+.+|.++..||+-|+.+-.. -...|..-++.|..+++.
T Consensus 18 ~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~ 65 (194)
T PF15619_consen 18 QNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQR 65 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 488999999999999999999987665 236676666666666654
No 83
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.86 E-value=62 Score=34.12 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHL 26 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~m 26 (253)
+.+|++.++.||.+|++||.||...
T Consensus 112 leneLKq~r~el~~~q~E~erl~~~ 136 (772)
T KOG0999|consen 112 LENELKQLRQELTNVQEENERLEKV 136 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999888654
No 84
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.73 E-value=1.2e+02 Score=21.73 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
++..|+.|...+.+++..|...+..
T Consensus 34 ~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 34 KVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 85
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=36.72 E-value=1.1e+02 Score=27.83 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDL 37 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~L 37 (253)
+.|-..|++|+.-+++||.+|..-.+.+...+..|
T Consensus 94 EkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 94 EKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 34556778888888888888877777666655544
No 86
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=36.69 E-value=1.1e+02 Score=25.36 Aligned_cols=7 Identities=43% Similarity=0.468 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 025402 8 LLQAKLE 14 (253)
Q Consensus 8 ~l~~EL~ 14 (253)
.|+.||.
T Consensus 34 ~l~~el~ 40 (120)
T PF12325_consen 34 SLQEELA 40 (120)
T ss_pred HHHHHHH
Confidence 3333333
No 87
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=36.66 E-value=46 Score=30.27 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
+|+..|++...|+++||+.|++..-
T Consensus 55 ~EIR~LKe~NqkLqedNqELRdLCC 79 (195)
T PF10226_consen 55 NEIRGLKEVNQKLQEDNQELRDLCC 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667777777777788888887543
No 88
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.24 E-value=1.1e+02 Score=27.01 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
..|.+.|+++...|..|++=|..+...+..|+..|.
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888899999999999999999988888876655
No 89
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=36.03 E-value=70 Score=24.05 Aligned_cols=19 Identities=16% Similarity=0.529 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENL 23 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL 23 (253)
|++.|++.+..+.+.|.+|
T Consensus 15 EVevLK~~I~eL~~~n~~L 33 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQL 33 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 90
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=35.84 E-value=1.5e+02 Score=25.84 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
.|.+.|+.||..|+.+....-.-.+.+-..|...+.+|.++-
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS 68 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVS 68 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777777777777763
No 91
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=35.68 E-value=1.3e+02 Score=28.60 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
.+.+++||..+..|.++|..-|..+-.....|..++.++
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555544443
No 92
>COG2770 ResE FOG: HAMP domain [Signal transduction mechanisms]
Probab=35.43 E-value=41 Score=25.35 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLV 27 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL 27 (253)
+.+|++.|+.++++|..+.++-.+.|
T Consensus 57 ~~dEi~~L~~a~~~m~~~l~~~~~~l 82 (83)
T COG2770 57 MLDEIGELAKAFNRMRDSLQRALSAL 82 (83)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56899999999999998888776654
No 93
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=34.09 E-value=1.2e+02 Score=29.14 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 025402 1 MMILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 38 (253)
Q Consensus 1 ~~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 38 (253)
||+.||..|+.-++.+..+|+||+.-+.++-+++..-+
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~ 86 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQR 86 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777666655554433
No 94
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.55 E-value=1.3e+02 Score=32.03 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
.++..|++|++.+++.-++|.+-++.+.+++..|..++..+++.
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777888888888888888888888877664
No 95
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=33.50 E-value=1.8e+02 Score=26.78 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
-|++.+++++...+..-+.|..++++..+.+..+...+.+++.
T Consensus 244 ~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~ 286 (306)
T PF04888_consen 244 KEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMK 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788887777888888888877777777777766654
No 96
>PRK14139 heat shock protein GrpE; Provisional
Probab=33.16 E-value=1.4e+02 Score=26.56 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
.+++..|+++|....+|...|++.+-+....|..+++++..
T Consensus 31 ~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~k 71 (185)
T PRK14139 31 EDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQE 71 (185)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888889888888888888887777777666665543
No 97
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.98 E-value=85 Score=26.50 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLV 27 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL 27 (253)
.|+..|++||..++.+++.|+.-|
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444333
No 98
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.80 E-value=1.9e+02 Score=22.88 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 39 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 39 (253)
++.+..|+-|++.++++|..|..-...+...-..|..
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~ 53 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3556778889999999888888876665444444443
No 99
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=32.43 E-value=1.8e+02 Score=24.17 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
-++.|.+.|+|.-.|...|+.-|..+...-..|...|..++..
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666543
No 100
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=32.29 E-value=1.1e+02 Score=23.27 Aligned_cols=31 Identities=19% Similarity=0.459 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHH
Q 025402 8 LLQAKLEHVRKQNENLRHLVKAM----NNQCNDLL 38 (253)
Q Consensus 8 ~l~~EL~rv~eEN~rL~~mL~~~----~~~y~~Lq 38 (253)
.+..-|.++-.||..|++.|.+- -+.|..|.
T Consensus 3 e~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~ 37 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKEALRQNNQAMKERFEELL 37 (68)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566889999999999999864 45555554
No 101
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=32.17 E-value=1.5e+02 Score=24.89 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCND 36 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~ 36 (253)
-.||..|+.||..+...|...+..|-.++..--+
T Consensus 39 ~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma 72 (131)
T PF10198_consen 39 SAELRRLQAELREQSAHNNARKKRLLKIAKEEMA 72 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999888888877654433
No 102
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=31.89 E-value=19 Score=34.07 Aligned_cols=31 Identities=32% Similarity=0.574 Sum_probs=21.8
Q ss_pred ccccCCccccccCcc---------------------ccCCCCCCcceeeccc
Q 025402 91 LIVKDGHQWRKYGQK---------------------VTKDNPSPRAYFRCSM 121 (253)
Q Consensus 91 ~~~~DGy~WRKYGQK---------------------~ikg~~~PRsYYRCs~ 121 (253)
+-+-=|++||-+|-| .||+||+-|----|+.
T Consensus 111 lgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~NP~drRIimsAw 162 (293)
T KOG0673|consen 111 LGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKNNPDDRRIIMSAW 162 (293)
T ss_pred cccccceeeeecCccccccccccccccHHHHHHHHHHHhcCCccceeeeecc
Confidence 444568999999977 3777887775555443
No 103
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.68 E-value=2.3e+02 Score=21.54 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 39 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 39 (253)
+.+..|+.|+.+++++|..|.+--..+......|+.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777666655555555553
No 104
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
Probab=31.65 E-value=44 Score=36.14 Aligned_cols=32 Identities=25% Similarity=0.553 Sum_probs=26.5
Q ss_pred CCCcccccceeecCCCcEEEEEeccccCCCCCC
Q 025402 124 SGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQC 156 (253)
Q Consensus 124 ~gC~akKqVQr~~~D~~~~~vtY~G~HnH~~p~ 156 (253)
.||+|.=.|.+. .|+.-.++-+..+|||+.-+
T Consensus 159 tGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p 190 (846)
T PLN03097 159 TDCKASMHVKRR-PDGKWVIHSFVKEHNHELLP 190 (846)
T ss_pred CCCceEEEEEEc-CCCeEEEEEEecCCCCCCCC
Confidence 379999999874 45668899999999999843
No 105
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=31.54 E-value=1.3e+02 Score=27.74 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
...+++|++...+|-++...-|+..-+++.+|++|..++
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555555555555555555555556666666655544
No 106
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=31.53 E-value=63 Score=27.09 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
+++++..|++-|.....|---|+..|..+.+--.+||.....
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~ 47 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEK 47 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHH
Confidence 456666677777777777777777777666666666654333
No 107
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=31.51 E-value=1.1e+02 Score=30.93 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
-+...+.||+|++|||..|.+-+-+
T Consensus 49 ~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 49 KLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999999988776554
No 108
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=31.47 E-value=1.4e+02 Score=25.83 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
++|+.||.-++.|.-.|.+.|..--+-+..||.|-.+-
T Consensus 37 eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqek 74 (134)
T PF15233_consen 37 EALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEK 74 (134)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999998888888888765543
No 109
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=31.33 E-value=1.6e+02 Score=28.38 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
+..|+..+.....||..|..+|...-+.-..|++.|.++
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~el 281 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQEL 281 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555554444444444444444
No 110
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=31.30 E-value=47 Score=28.28 Aligned_cols=37 Identities=19% Similarity=0.480 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHhHHHHH
Q 025402 2 MILQMKLLQAKLEHV-RKQNENLRHLVKA---MNNQCNDLL 38 (253)
Q Consensus 2 ~~~el~~l~~EL~rv-~eEN~rL~~mL~~---~~~~y~~Lq 38 (253)
++.|++.+..||.+= ++|.++|.+.|.. +.++|..++
T Consensus 49 ~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~ 89 (147)
T PF05659_consen 49 IIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR 89 (147)
T ss_pred HHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 357888999999998 9999999999984 556665543
No 111
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=31.00 E-value=2.2e+02 Score=25.09 Aligned_cols=41 Identities=24% Similarity=0.483 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
...++.++..+.+|++.|..-+..+..++..++.+..+..+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888888888887776544
No 112
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=30.91 E-value=1.7e+02 Score=26.80 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 39 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 39 (253)
|...+..++.+|++..+.+.+|++....+-+++..|+.
T Consensus 34 i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~h 71 (243)
T PF07160_consen 34 IEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQH 71 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888899888888888887765
No 113
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=30.87 E-value=89 Score=32.00 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHhcCC
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQC---NDLLARIHEANRTYS 49 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y---~~Lq~~l~~~~~~~~ 49 (253)
--|+..|++||..|+.+|++-+.-|-+|...- ..+| |+++++.+++
T Consensus 407 laeLR~lqaeLk~vS~~N~k~k~~Ll~la~eE~a~qe~~-q~lddlDkqI 455 (516)
T KOG4191|consen 407 LAELRKLQAELKAVSAHNRKKKHDLLRLAPEEMARQEFQ-QVLDDLDKQI 455 (516)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHH
Confidence 35788999999999999998888777775433 3333 3444445543
No 114
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.84 E-value=1.9e+02 Score=23.17 Aligned_cols=41 Identities=24% Similarity=0.452 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHV--RKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 4 ~el~~l~~EL~rv--~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
..+..|+.+|+.+ +.+-.+|..-|+.+...-..|..+|..+
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455566666666 6666666666666665555555555444
No 115
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.56 E-value=2.1e+02 Score=22.35 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
..|+..+..+..+-++|..-+..+.+....|+.+|.++
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888888888888888888888888776
No 116
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=29.93 E-value=1.5e+02 Score=25.26 Aligned_cols=35 Identities=3% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 12 KLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 12 EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
|..++...--||-.||+.|...|+.-..|+..++.
T Consensus 71 ~~~e~q~kK~KLl~mL~eVd~RY~qY~~Qmq~Vvs 105 (140)
T PF07526_consen 71 ERQELQRKKAKLLSMLDEVDRRYRQYYDQMQAVVS 105 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555678999999999999998888887765
No 117
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=29.75 E-value=1e+02 Score=24.79 Aligned_cols=18 Identities=0% Similarity=0.001 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025402 8 LLQAKLEHVRKQNENLRH 25 (253)
Q Consensus 8 ~l~~EL~rv~eEN~rL~~ 25 (253)
.+++|+.++..|+++|+.
T Consensus 75 ~~~~ei~~L~~el~~L~~ 92 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTM 92 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555543
No 118
>PF15058 Speriolin_N: Speriolin N terminus
Probab=29.72 E-value=89 Score=28.53 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
|-|...++|+-.||.+|+..+.-|.||+. |+.-|.+..
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLirEN~e-LksaL~ea~ 45 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIRENHE-LKSALGEAC 45 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHhh
Confidence 56788899999999999999999999876 444455543
No 119
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.50 E-value=1.4e+02 Score=31.58 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHh
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHL--------------VKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~m--------------L~~~~~~y~~Lq~~l~~~~~ 46 (253)
++.|++.|++||..++..-+.|+.. |.++-..+..||..+..+++
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777666655555555 55566677788888877765
No 120
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=29.42 E-value=1.9e+02 Score=24.74 Aligned_cols=37 Identities=8% Similarity=0.237 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNE------------NLRHLVKAMNNQCNDLLAR 40 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~------------rL~~mL~~~~~~y~~Lq~~ 40 (253)
.|...|+.|+.++++|++ ||+.-++.+.+.+..++..
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777765 3455555555555554443
No 121
>PRK14162 heat shock protein GrpE; Provisional
Probab=29.27 E-value=1.8e+02 Score=26.07 Aligned_cols=40 Identities=10% Similarity=0.209 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
.+++.|+++|..+.+++..|++-+-++...|..++.+...
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888777777777666665543
No 122
>PF14282 FlxA: FlxA-like protein
Probab=28.79 E-value=2e+02 Score=23.06 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 3 ILQMKLLQAKLEHVRK-QN---ENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 3 ~~el~~l~~EL~rv~e-EN---~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
..++..|+++|..|.+ +. +.-......|-..-..|+.||..+...
T Consensus 25 ~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 25 QKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777 22 344455555556667777777766543
No 123
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.77 E-value=2.6e+02 Score=24.37 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
..+++.|+..+......-.+|+.-|..+..++..|+.....++.+
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888888888888888877777654
No 124
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=28.66 E-value=2.2e+02 Score=25.84 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 41 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 41 (253)
.|...|+..+.-+-+.|.+|.+=+..++..+..||.-+
T Consensus 22 ~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal 59 (193)
T PF14662_consen 22 DENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL 59 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888888888887433
No 125
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.60 E-value=2.1e+02 Score=25.15 Aligned_cols=29 Identities=3% Similarity=0.107 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 15 HVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 15 rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
+++++.+.+++.+.+.++|...|+..+..
T Consensus 139 ~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 139 KLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555566666666666666665544
No 126
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=28.49 E-value=1.8e+02 Score=22.85 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 48 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 48 (253)
|..|-..+..|++||.+|+. .=..||..|..+|...
T Consensus 32 L~~L~~Rve~Vk~E~~kL~~-------EN~~Lq~YI~nLm~~s 67 (80)
T PF10224_consen 32 LEALSDRVEEVKEENEKLES-------ENEYLQQYIGNLMSSS 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 44455555667777777763 3355777777777654
No 127
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=27.81 E-value=1.6e+02 Score=27.22 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 38 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 38 (253)
.|.+.|+.+++++..+.++|++-|....+-.+.|.
T Consensus 18 ~e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~ 52 (236)
T PF12017_consen 18 IENKKLKKKIRRLEKELKKLKQKLEKYQKLENSLK 52 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888887765444444443
No 128
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=27.74 E-value=2.1e+02 Score=28.45 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
++++|+.+++-|..-.-||+.+..-|.+.-.-|..||.++.++-+
T Consensus 152 LKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe 196 (405)
T KOG2010|consen 152 LKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKE 196 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777777777777788877777643
No 129
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.61 E-value=2.3e+02 Score=26.68 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMN----NQCNDLLARIHEA 44 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~----~~y~~Lq~~l~~~ 44 (253)
.|+..+++++.++..|.+.|..-|+... ..+.+|+.++..+
T Consensus 57 ~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l 101 (247)
T COG3879 57 KELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKL 101 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 4566677777777777777777777665 5566666655444
No 130
>smart00574 POX domain associated with HOX domains.
Probab=27.54 E-value=1.8e+02 Score=25.28 Aligned_cols=35 Identities=3% Similarity=0.256 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 12 KLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 12 EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
|...+.-...+|-.||+.|...|+.-..|+..++.
T Consensus 71 ~r~e~q~kk~kLl~mL~eVd~RY~qY~~qmq~v~s 105 (140)
T smart00574 71 ERQELQRKKAKLLSMLEEVDRRYKHYYEQMQTVVS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455668999999999999998888887765
No 131
>PRK14143 heat shock protein GrpE; Provisional
Probab=27.43 E-value=2e+02 Score=26.55 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
.++..|++||..+.+|.+.|+..+-++...|..++++...
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888877777776666666665543
No 132
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=27.41 E-value=2.8e+02 Score=24.62 Aligned_cols=43 Identities=16% Similarity=0.333 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
..+..++.||..++-|++-|..-+..+...+..|...|...+.
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ 135 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQ 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777777777777777665544
No 133
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=27.31 E-value=2.2e+02 Score=23.57 Aligned_cols=40 Identities=8% Similarity=0.218 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 8 LLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 8 ~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
.|++|.+++++|-.|=.++|....++-..+++=|.++-..
T Consensus 39 ~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~ 78 (106)
T PF11594_consen 39 VLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQNQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666667777776666677766666666666656666443
No 134
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=27.28 E-value=54 Score=19.05 Aligned_cols=12 Identities=25% Similarity=0.590 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q 025402 10 QAKLEHVRKQNE 21 (253)
Q Consensus 10 ~~EL~rv~eEN~ 21 (253)
.+||+|+++|-.
T Consensus 2 ~aeLerLknerH 13 (17)
T PF12107_consen 2 EAELERLKNERH 13 (17)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHhcc
Confidence 468888887743
No 135
>PRK09343 prefoldin subunit beta; Provisional
Probab=27.12 E-value=2.7e+02 Score=22.74 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 48 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 48 (253)
+.|.+.++-+..+-++|..-...+-+.+..++.+|.++++.-
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788888888888898888999999999999999998763
No 136
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=26.53 E-value=1.2e+02 Score=22.14 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~ 30 (253)
.....+|..+..||+.|+.-|...
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999888654
No 137
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=26.51 E-value=2.3e+02 Score=25.01 Aligned_cols=40 Identities=15% Similarity=0.323 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
.++....+||+|+.++-++|......+..+++.+..+...
T Consensus 72 k~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~q 111 (157)
T COG3352 72 KQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQ 111 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHH
Confidence 4667788999999999999998888888888877665443
No 138
>PRK14160 heat shock protein GrpE; Provisional
Probab=26.47 E-value=2.4e+02 Score=25.75 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
++.|+.++..+.+++..|..-+..+.+.|..+++-|.-+
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~ 94 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNY 94 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666555544
No 139
>PF14645 Chibby: Chibby family
Probab=25.86 E-value=1.4e+02 Score=24.61 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025402 8 LLQAKLEHVRKQNENLRHLVKAMNNQCN 35 (253)
Q Consensus 8 ~l~~EL~rv~eEN~rL~~mL~~~~~~y~ 35 (253)
...+|..++++||++|.+=-..+-=+|.
T Consensus 68 ~~~~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 68 ADGEENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999985444433333
No 140
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=25.70 E-value=2.8e+02 Score=21.86 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMN---------NQCNDLLARIHEAN 45 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~---------~~y~~Lq~~l~~~~ 45 (253)
.+++.|.-||..|..|-.-|+..|.-+. -.|.-|..+=.++|
T Consensus 19 k~lE~L~~eL~~it~ERnELr~~L~~~~~~~~n~R~n~~ye~Lk~q~~~vM 69 (84)
T PF04822_consen 19 KELERLKFELQKITKERNELRDILALYTEGSLNNRPNPEYEMLKSQHEEVM 69 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCChHHHHHHHHHHHHH
Confidence 6888999999999999999999998653 24666655544444
No 141
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.26 E-value=1.9e+02 Score=27.95 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHhcC
Q 025402 13 LEHVRKQNENLRHLVKAMN----NQCNDLLARIHEANRTY 48 (253)
Q Consensus 13 L~rv~eEN~rL~~mL~~~~----~~y~~Lq~~l~~~~~~~ 48 (253)
|.+.+.|-++|+..++.|. ++-..+|+-|.++.-++
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN 158 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQN 158 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhH
Confidence 3445567888888888765 44466777777775443
No 142
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.18 E-value=3.8e+02 Score=21.84 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 39 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 39 (253)
++..+..|++.|..+.++-..|+..+..+.+.=..|+.
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888888888877766555554
No 143
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=25.12 E-value=2.7e+02 Score=26.69 Aligned_cols=42 Identities=10% Similarity=0.161 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
+++|+.|++.|-.++.|++....-|..+-..+..|+..+-++
T Consensus 118 kd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 118 KDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666555444444444444455555444443
No 144
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.09 E-value=1.8e+02 Score=24.46 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402 12 KLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 12 EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
||..+..|...|++-|..+-..+..|+..|..+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444455555555555553
No 145
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=24.90 E-value=3.2e+02 Score=23.34 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 48 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 48 (253)
..++..|.++.++-.++-.+|+.++......-..-+.+|.++.+.+
T Consensus 46 ~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~EN 91 (135)
T TIGR03495 46 ANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKREN 91 (135)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3566667777777677777777777777766666677777776554
No 146
>smart00340 HALZ homeobox associated leucin zipper.
Probab=24.85 E-value=1.5e+02 Score=21.07 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~ 30 (253)
+-|+.=-+.+.+||+||..-|..+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555677888888887665554
No 147
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=24.68 E-value=2.7e+02 Score=23.73 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 48 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 48 (253)
+..++++.+-+.+|-+||.+.-...-+.-..|+.-|...|...
T Consensus 49 Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 49 IKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567788888889999999988888899999999999998864
No 148
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.64 E-value=2.8e+02 Score=26.13 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
|++.|++||..+..+...++.-|.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333333
No 149
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.63 E-value=3e+02 Score=25.93 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
..++.|+.++..+.+...+|.+.+..+.+.|..|...+..+-+
T Consensus 156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666777777777776665543
No 150
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.36 E-value=2.9e+02 Score=21.53 Aligned_cols=39 Identities=23% Similarity=0.465 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
.+.|+..+..+.++-.+|...|..+.+.+..|+..+..+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345777778888888888888888888888888776654
No 151
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.20 E-value=2.3e+02 Score=23.02 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 11 AKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 11 ~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
.+|+.+.++.++|+..+..+......|...+.++
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~ 39 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINEL 39 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555544
No 152
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=24.11 E-value=3.4e+02 Score=24.92 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 48 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 48 (253)
++..+..++.+|...+++.+..+.........-...|..+.+++++.
T Consensus 37 LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK 83 (207)
T PF05546_consen 37 LKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRK 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35667788888888888888888888888888899999999999864
No 153
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=24.07 E-value=3e+02 Score=26.30 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
..++.|+++...+......|.+++..+.+.|..|+..+..+.+.
T Consensus 151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~ 194 (312)
T smart00787 151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQL 194 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777777777777888888888888888777554
No 154
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.00 E-value=1.8e+02 Score=28.28 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 11 AKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 11 ~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
+++.-+.+||++|-.-+..+.+.|..++.+|.++
T Consensus 211 e~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI 244 (316)
T KOG3894|consen 211 EQVQLLETENQRLLNELNELLDEVRQIEKRLVEI 244 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555544
No 155
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=23.91 E-value=1.9e+02 Score=29.41 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
+.+.++.||+.+.+|+++|-..|..+.+.-..|-.+|.++-.
T Consensus 177 ~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~ 218 (447)
T KOG2751|consen 177 SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEF 218 (447)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999888777777777777644
No 156
>PRK14163 heat shock protein GrpE; Provisional
Probab=23.87 E-value=2.4e+02 Score=25.83 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
.+.+.|+++|..+.+|...|+..|-++...|..++.++..
T Consensus 40 ~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 40 AATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888877777776666666665543
No 157
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.87 E-value=2.8e+02 Score=22.87 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 39 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 39 (253)
+.|..++.+...++.+|...+..+.+....++.
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~er 87 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELER 87 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333
No 158
>PRK14140 heat shock protein GrpE; Provisional
Probab=23.78 E-value=2.7e+02 Score=24.92 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
+++.|+++|....+|...|++-|-+....|..++.+..
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~ 75 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQ 75 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777666666666655555443
No 159
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=23.48 E-value=3.6e+02 Score=22.86 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
..+...++.+|....++..++++-|..+-.....++.....+
T Consensus 90 ~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 90 SEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666655554
No 160
>PRK14160 heat shock protein GrpE; Provisional
Probab=23.36 E-value=3e+02 Score=25.11 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
..++..|+++|....++...|+.-+-++...|...+.+...-
T Consensus 60 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE 101 (211)
T PRK14160 60 KDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKE 101 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888887777777766543
No 161
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=23.34 E-value=2.7e+02 Score=23.99 Aligned_cols=43 Identities=14% Similarity=0.329 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 48 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 48 (253)
++.|+.+++.+.+.-++|..+|..+...+..|+..+..+.+++
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999888876643
No 162
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.22 E-value=3.5e+02 Score=24.31 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
.|-..|.+|++.+..|...|+.-..++...-..++..+.++-
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~ 90 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666555555555555553
No 163
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=22.93 E-value=2.8e+02 Score=24.88 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402 9 LQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 9 l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
+.+--..|..||++|+.-|..+...|..|+..-..+-
T Consensus 154 l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le 190 (206)
T PF14988_consen 154 LDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLE 190 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667899999999999999999999998766653
No 164
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=22.51 E-value=2.5e+02 Score=27.26 Aligned_cols=41 Identities=12% Similarity=0.323 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
+-+|-.||+.-+.|-.+.+.|.+++-+.|.+|+....++..
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~ 51 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQ 51 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45788999999999999999999999999999999988873
No 165
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=22.47 E-value=2.7e+02 Score=22.62 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLAR 40 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~ 40 (253)
.++..|..++.++...-.+|...|+.|......|..-
T Consensus 57 ~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~ 93 (116)
T PF05064_consen 57 EKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEEL 93 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999997766665543
No 166
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=22.42 E-value=3e+02 Score=28.71 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENL 23 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL 23 (253)
+.|++||....+++.+|
T Consensus 174 ~~l~~eL~~~~ee~e~L 190 (546)
T PF07888_consen 174 ERLEAELEQEEEEMEQL 190 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334443333333333
No 167
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.35 E-value=2.5e+02 Score=25.62 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
+.+.|++||..+.++...|+.-+-++...|..++.+..
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~ 90 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIE 90 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888887777777666666665544
No 168
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.24 E-value=3.6e+02 Score=21.91 Aligned_cols=42 Identities=14% Similarity=0.340 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
++.|...+..+.+.-++|..-|..+.+.+..++..+.++..+
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888888888888888888887654
No 169
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=22.23 E-value=2.9e+02 Score=28.36 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
..++.+++|+.++.+|-+.+++-|..+.+.|..+...+.+.+.
T Consensus 215 ~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 257 (646)
T PRK05771 215 ELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLE 257 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888777766664444443
No 170
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.11 E-value=1.9e+02 Score=22.13 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNN 32 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~ 32 (253)
+.-++||+.+.+++++.+++|..+-+
T Consensus 55 eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 55 EEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777766543
No 171
>PRK14161 heat shock protein GrpE; Provisional
Probab=21.93 E-value=2.6e+02 Score=24.72 Aligned_cols=37 Identities=8% Similarity=0.223 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
++.+++||....+|...|++.+-+....|..++.+..
T Consensus 21 ~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 21 VETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777766666666655555444
No 172
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=21.93 E-value=1.9e+02 Score=20.62 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHH
Q 025402 8 LLQAKLEHVRKQNEN-------LRHLVKAM 30 (253)
Q Consensus 8 ~l~~EL~rv~eEN~r-------L~~mL~~~ 30 (253)
.|..+|.+..++|.+ |++-++.+
T Consensus 4 eL~~~l~~~e~~~~~k~~~v~eLe~YiD~L 33 (48)
T PF09457_consen 4 ELISLLKKQEEENARKDSRVRELEDYIDNL 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566665 76666554
No 173
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.93 E-value=2.7e+02 Score=28.65 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHhHHHHHHHHHHHHh
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKA------------------MNNQCNDLLARIHEANR 46 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~------------------~~~~y~~Lq~~l~~~~~ 46 (253)
.++.++.||...+|+|+.|.+-+.. .-+.-..||.||.++|-
T Consensus 390 k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 390 KLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 3455666666666666665544443 33444567777777764
No 174
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.63 E-value=63 Score=33.02 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLV 27 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL 27 (253)
|++.|+.||+.++++...|...+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 45555555555555544333333
No 175
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.62 E-value=4.4e+02 Score=21.66 Aligned_cols=15 Identities=7% Similarity=0.202 Sum_probs=6.4
Q ss_pred HHHHhHHHHHHHHHH
Q 025402 29 AMNNQCNDLLARIHE 43 (253)
Q Consensus 29 ~~~~~y~~Lq~~l~~ 43 (253)
...+....|+.++..
T Consensus 91 ~~~~~~~~l~~~~~~ 105 (151)
T PF11559_consen 91 SAEEKERQLQKQLKS 105 (151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 176
>PRK14158 heat shock protein GrpE; Provisional
Probab=21.58 E-value=3.4e+02 Score=24.39 Aligned_cols=39 Identities=10% Similarity=0.046 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
.+++.|+++|....+|...|++-+-+....|..++.+..
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~ 78 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQ 78 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777766666666665555444
No 177
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=21.55 E-value=77 Score=34.20 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 39 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 39 (253)
-++.|.+.+-+++.||+||.|-|..+..+-.+||.
T Consensus 648 s~eqLle~~~qlqsen~Rleeqi~~l~akke~l~~ 682 (900)
T KOG0956|consen 648 SVEQLLECQFQLQSENFRLEEQISGLTAKKERLQA 682 (900)
T ss_pred cHHHHHHHHHhhhhhhhhhhhccccchhhHHHHhh
Confidence 46889999999999999999999888877777765
No 178
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=21.44 E-value=3.6e+02 Score=20.29 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
..++.|...+..+..--..|..++..+.+++...+.++...
T Consensus 7 ~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~ 47 (127)
T smart00502 7 ELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAA 47 (127)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666655443
No 179
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=21.39 E-value=2.3e+02 Score=30.58 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
.++..+++|+.++..|...|++||+..-..-+.||..|-
T Consensus 364 ~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie 402 (775)
T PF10174_consen 364 AQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIE 402 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999988888888888843
No 180
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=21.21 E-value=3.6e+02 Score=20.91 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
+.|...+..+++.-++|..-+..+.+.+..++..+..+.
T Consensus 80 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 80 EFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666777777777777777666665554
No 181
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=21.01 E-value=2.5e+02 Score=29.04 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 48 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 48 (253)
+..+..|..-+.|++-|-.-|..|..+|..||-+.+.-|++.
T Consensus 400 a~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqK 441 (527)
T PF15066_consen 400 ANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQK 441 (527)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 344667888888999999999999999999999988777653
No 182
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=20.96 E-value=49 Score=29.16 Aligned_cols=6 Identities=50% Similarity=0.888 Sum_probs=2.7
Q ss_pred HHHHHH
Q 025402 8 LLQAKL 13 (253)
Q Consensus 8 ~l~~EL 13 (253)
.|+.||
T Consensus 18 lLE~EL 23 (166)
T PF04880_consen 18 LLESEL 23 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344444
No 183
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=20.82 E-value=4.2e+02 Score=20.76 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNN 32 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~ 32 (253)
+.+.++.+++|-..+..||+-|...++-+..
T Consensus 35 L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 35 LSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777776666543
No 184
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.59 E-value=4.5e+02 Score=22.75 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
++..|+.|+.....+.+.|.+.|......-..|+.-+.
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~ 154 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQ 154 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555544444444444444333
No 185
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.57 E-value=1.4e+02 Score=28.27 Aligned_cols=33 Identities=9% Similarity=0.198 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 38 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 38 (253)
++..+++|...+.+-..|..-|..+...|....
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~ 262 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQ 262 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 186
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=20.36 E-value=4.3e+02 Score=23.97 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 025402 10 QAKLEHVRKQNENLRHLVKAMNNQCNDL 37 (253)
Q Consensus 10 ~~EL~rv~eEN~rL~~mL~~~~~~y~~L 37 (253)
..++..+++|+.+++..+..+......|
T Consensus 208 ~~~~~~~~~E~~~~r~~~~~l~~el~~l 235 (312)
T PF00038_consen 208 SEELESAKEELKELRRQIQSLQAELESL 235 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHhHHHHHHhhhhHhhhhhhcc
Confidence 3444444444444444444444333333
No 187
>PRK14155 heat shock protein GrpE; Provisional
Probab=20.35 E-value=2.3e+02 Score=25.68 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
+.+.|+.||....+|...|++-+-++...|..++.+...
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~k 52 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAER 52 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888877777776666666665543
No 188
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=20.32 E-value=2.3e+02 Score=31.32 Aligned_cols=47 Identities=11% Similarity=0.228 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYS 49 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~~ 49 (253)
.+|.+.|++|+.++.++-++|+++|+.-...+..+...|.++-.+-.
T Consensus 445 ~le~~kl~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~eik~kyg 491 (957)
T PRK13979 445 GLEIVAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEVKEKYG 491 (957)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 47888999999999999999999999999999999999999876643
No 189
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=20.31 E-value=2.6e+02 Score=30.02 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYS 49 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~~ 49 (253)
.+|...|+.|+..+.+|-+.|+..|+...+.++-+...|.++-.+-.
T Consensus 426 ~~e~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkkfg 472 (800)
T TIGR01063 426 GLEREKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQFG 472 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999998876543
No 190
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.25 E-value=4.2e+02 Score=22.36 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCN 35 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~ 35 (253)
..|..||.++.+.+..+...|..+.+.+.
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~ 119 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKEDLQ 119 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333
No 191
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=20.23 E-value=2.9e+02 Score=21.97 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHL 26 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~m 26 (253)
|.....|.-|+.+||+||+.+
T Consensus 46 vtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555443
No 192
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.10 E-value=2.3e+02 Score=26.76 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025402 8 LLQAKLEHVRKQNENLR 24 (253)
Q Consensus 8 ~l~~EL~rv~eEN~rL~ 24 (253)
.|+.+|+.+..+..+|+
T Consensus 60 ~l~~Ql~~l~g~i~~L~ 76 (262)
T COG1729 60 QLEQQLRQLQGKIEELR 76 (262)
T ss_pred HHHHHHHHHHhhHHHHH
Confidence 34444444444444444
Done!