Query 025402
Match_columns 253
No_of_seqs 267 out of 730
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 09:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 5.5E-36 1.9E-40 227.7 6.9 75 78-156 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 3.7E-35 1.3E-39 224.2 5.9 74 79-156 5-78 (78)
3 2zxx_A Geminin; coiled-coil, c 90.9 0.25 8.6E-06 37.6 4.2 27 4-30 41-67 (79)
4 2rpr_A Flywch-type zinc finger 88.5 0.34 1.1E-05 35.9 3.3 53 90-155 21-74 (87)
5 3m91_A Proteasome-associated A 87.4 2.5 8.4E-05 29.6 6.9 42 4-45 9-50 (51)
6 1ci6_A Transcription factor AT 81.2 4.6 0.00016 28.7 6.3 40 4-43 23-62 (63)
7 1t2k_D Cyclic-AMP-dependent tr 79.0 6 0.00021 27.6 6.2 39 4-42 22-60 (61)
8 2wt7_A Proto-oncogene protein 78.8 8.1 0.00028 27.2 6.9 39 4-42 23-61 (63)
9 2wt7_B Transcription factor MA 77.0 2.9 9.8E-05 32.4 4.3 36 3-38 54-89 (90)
10 1wrd_A TOM1, target of MYB pro 75.9 7.2 0.00025 30.1 6.4 44 4-47 6-65 (103)
11 1uii_A Geminin; human, DNA rep 75.3 4.4 0.00015 31.1 4.9 27 4-30 53-79 (83)
12 1jnm_A Proto-oncogene C-JUN; B 74.2 4.1 0.00014 28.6 4.2 39 4-42 22-60 (62)
13 3a7o_A Autophagy protein 16; c 74.0 11 0.00037 28.3 6.6 43 2-44 16-58 (75)
14 1wlq_A Geminin; coiled-coil; 2 74.0 4 0.00014 31.3 4.4 27 4-30 45-71 (83)
15 2wvr_A Geminin; DNA replicatio 72.6 8.3 0.00028 34.0 6.6 40 4-47 122-161 (209)
16 2oa5_A Hypothetical protein BQ 71.4 2.9 0.0001 33.5 3.2 23 6-28 10-32 (110)
17 1lwu_C Fibrinogen gamma chain; 70.4 11 0.00037 34.8 7.3 46 2-47 10-55 (323)
18 1dh3_A Transcription factor CR 68.5 6.1 0.00021 27.5 4.0 30 5-34 23-52 (55)
19 3s9g_A Protein hexim1; cyclin 68.1 4.2 0.00014 32.3 3.4 21 5-25 66-86 (104)
20 1ci6_A Transcription factor AT 67.7 6.5 0.00022 27.9 4.1 27 3-29 36-62 (63)
21 3hnw_A Uncharacterized protein 67.6 17 0.00059 29.5 7.2 40 5-44 90-129 (138)
22 2oxj_A Hybrid alpha/beta pepti 66.6 10 0.00034 24.7 4.4 25 4-28 8-32 (34)
23 4dzo_A Mitotic spindle assembl 66.5 10 0.00036 30.3 5.5 33 4-36 4-36 (123)
24 1t2k_D Cyclic-AMP-dependent tr 63.4 10 0.00034 26.4 4.4 24 4-27 36-59 (61)
25 1hjb_A Ccaat/enhancer binding 62.7 19 0.00066 27.4 6.1 38 7-44 39-76 (87)
26 2r2v_A GCN4 leucine zipper; co 62.2 15 0.0005 23.9 4.5 26 3-28 7-32 (34)
27 1kd8_B GABH BLL, GCN4 acid bas 62.2 16 0.00053 24.0 4.7 26 4-29 8-33 (36)
28 1gd2_E Transcription factor PA 61.7 9.8 0.00033 27.9 4.2 29 4-32 36-64 (70)
29 2j5u_A MREC protein; bacterial 61.5 5.6 0.00019 35.0 3.4 24 7-30 22-45 (255)
30 3m9b_A Proteasome-associated A 60.3 13 0.00043 33.6 5.4 42 5-46 55-96 (251)
31 3a7p_A Autophagy protein 16; c 58.7 25 0.00086 29.5 6.7 43 4-46 68-117 (152)
32 4etp_A Kinesin-like protein KA 58.3 23 0.0008 33.1 7.2 38 7-44 20-57 (403)
33 3mtu_E Head morphogenesis prot 58.3 18 0.00063 27.3 5.2 32 2-33 42-73 (77)
34 3c3f_A Alpha/beta peptide with 58.0 18 0.00061 23.5 4.4 25 4-28 8-32 (34)
35 3v86_A De novo design helix; c 57.9 10 0.00036 23.1 3.1 21 3-23 6-26 (27)
36 2yy0_A C-MYC-binding protein; 57.4 19 0.00066 24.9 4.9 28 4-31 19-46 (53)
37 1t6f_A Geminin; coiled-coil, c 57.4 8.1 0.00028 25.5 2.7 21 5-25 15-35 (37)
38 3m48_A General control protein 55.4 16 0.00056 23.6 3.8 26 3-28 6-31 (33)
39 2c9l_Y EB1, zebra, BZLF1 trans 55.1 17 0.00057 26.2 4.3 30 4-33 22-51 (63)
40 1uo4_A General control protein 54.0 18 0.0006 23.5 3.8 26 3-28 7-32 (34)
41 1oxz_A ADP-ribosylation factor 53.4 38 0.0013 28.9 7.1 44 4-47 69-129 (186)
42 1o3x_A ADP-ribosylation factor 53.0 43 0.0015 27.2 7.1 44 4-47 44-104 (140)
43 2xdj_A Uncharacterized protein 52.6 46 0.0016 25.0 6.7 34 3-36 26-59 (83)
44 3u06_A Protein claret segregat 52.1 34 0.0012 32.2 7.2 12 94-105 135-148 (412)
45 1gu4_A CAAT/enhancer binding p 52.1 20 0.0007 26.7 4.6 36 6-41 38-73 (78)
46 1naf_A ADP-ribosylation factor 51.8 37 0.0013 28.3 6.6 44 4-47 53-113 (158)
47 1kd8_A GABH AIV, GCN4 acid bas 51.6 28 0.00094 22.9 4.5 26 4-29 8-33 (36)
48 1cz6_A Protein (androctonin); 51.2 4.9 0.00017 24.3 0.8 9 115-123 16-24 (26)
49 1wt6_A Myotonin-protein kinase 50.7 47 0.0016 25.3 6.4 38 7-44 27-64 (81)
50 3s9g_A Protein hexim1; cyclin 50.4 60 0.002 25.7 7.2 43 3-45 36-78 (104)
51 2wt7_A Proto-oncogene protein 50.2 26 0.00089 24.6 4.7 24 5-28 38-61 (63)
52 2dgc_A Protein (GCN4); basic d 49.5 29 0.00099 24.6 4.9 30 4-33 30-59 (63)
53 1m1j_C Fibrinogen gamma chain; 49.5 35 0.0012 32.4 6.9 46 2-47 89-134 (409)
54 4etp_A Kinesin-like protein KA 49.4 24 0.0008 33.0 5.6 39 5-43 4-42 (403)
55 1fzc_C Fibrin; blood coagulati 49.1 9.4 0.00032 35.2 2.8 46 2-47 2-47 (319)
56 3u06_A Protein claret segregat 48.8 26 0.00088 33.0 5.8 10 35-44 48-57 (412)
57 3bas_A Myosin heavy chain, str 46.5 79 0.0027 23.5 7.2 39 5-43 22-60 (89)
58 2zqm_A Prefoldin beta subunit 46.5 66 0.0023 23.9 6.8 42 6-47 72-113 (117)
59 3hnw_A Uncharacterized protein 46.3 66 0.0022 26.0 7.2 40 5-44 83-122 (138)
60 3ghg_A Fibrinogen alpha chain; 46.0 67 0.0023 32.0 8.4 46 4-49 131-193 (562)
61 3c3g_A Alpha/beta peptide with 46.0 36 0.0012 21.9 4.4 23 6-28 9-31 (33)
62 4h22_A Leucine-rich repeat fli 45.7 58 0.002 25.7 6.5 40 4-43 37-76 (103)
63 3q8t_A Beclin-1; autophagy, AT 45.2 89 0.003 23.7 7.4 17 30-46 58-74 (96)
64 3o0z_A RHO-associated protein 44.8 68 0.0023 27.2 7.3 35 4-38 104-138 (168)
65 1nkp_B MAX protein, MYC proto- 44.8 21 0.0007 26.0 3.6 22 6-27 56-77 (83)
66 4h22_A Leucine-rich repeat fli 44.7 81 0.0028 24.9 7.2 39 4-42 44-82 (103)
67 1zxa_A CGMP-dependent protein 43.5 24 0.00081 25.9 3.7 31 5-35 26-56 (67)
68 1fmh_A General control protein 43.4 37 0.0013 21.5 4.0 29 5-33 2-30 (33)
69 2aze_B Transcription factor E2 43.4 45 0.0015 25.9 5.5 32 4-35 6-37 (106)
70 1gu4_A CAAT/enhancer binding p 42.9 13 0.00044 27.8 2.2 26 5-30 51-76 (78)
71 3q8t_A Beclin-1; autophagy, AT 42.6 80 0.0027 24.0 6.7 41 4-44 4-44 (96)
72 2z5i_A TM, general control pro 42.2 30 0.001 23.8 3.9 28 4-31 19-46 (52)
73 2jee_A YIIU; FTSZ, septum, coi 41.8 1.1E+02 0.0038 23.1 7.3 26 4-29 20-45 (81)
74 1wmi_B RELB, hypothetical prot 41.6 18 0.00061 26.5 2.7 21 8-28 8-28 (67)
75 2wuj_A Septum site-determining 40.5 19 0.00067 24.9 2.7 27 5-31 28-54 (57)
76 2wuj_A Septum site-determining 40.1 34 0.0012 23.7 3.9 24 2-25 32-55 (57)
77 2wq1_A General control protein 39.8 52 0.0018 21.2 4.4 23 6-28 9-31 (33)
78 1hjb_A Ccaat/enhancer binding 39.8 48 0.0016 25.1 5.0 28 5-32 51-78 (87)
79 2bni_A General control protein 39.4 36 0.0012 22.1 3.6 24 5-28 9-32 (34)
80 1wr6_A ADP-ribosylation factor 39.2 30 0.001 27.1 4.0 40 8-47 5-60 (111)
81 1jnm_A Proto-oncogene C-JUN; B 39.1 15 0.00053 25.6 2.0 22 6-27 38-59 (62)
82 2efr_A General control protein 39.0 1E+02 0.0035 25.6 7.4 43 3-45 104-146 (155)
83 3he5_A Synzip1; heterodimeric 38.7 91 0.0031 21.2 6.1 39 3-41 9-47 (49)
84 3a5t_A Transcription factor MA 38.5 0.36 1.2E-05 38.5 -7.3 39 4-42 65-103 (107)
85 2aze_A Transcription factor DP 38.2 66 0.0023 27.0 6.1 36 4-39 5-40 (155)
86 2oqq_A Transcription factor HY 38.0 52 0.0018 22.2 4.4 20 8-27 21-40 (42)
87 2dgc_A Protein (GCN4); basic d 38.0 30 0.001 24.5 3.4 26 3-28 36-61 (63)
88 2yy0_A C-MYC-binding protein; 37.9 68 0.0023 22.1 5.2 31 11-41 19-49 (53)
89 1uii_A Geminin; human, DNA rep 37.7 88 0.003 23.8 6.2 28 4-31 46-73 (83)
90 3l4f_A RHO guanine nucleotide 35.5 1.2E+02 0.0042 21.8 6.3 40 6-45 9-48 (61)
91 1p9i_A Cortexillin I/GCN4 hybr 35.4 48 0.0017 20.7 3.6 23 9-31 4-26 (31)
92 2wvr_A Geminin; DNA replicatio 35.3 1.1E+02 0.0036 27.0 7.1 43 4-47 115-157 (209)
93 3n7n_E Monopolin complex subun 34.7 8.2 0.00028 30.2 0.0 24 3-26 49-72 (95)
94 2w6b_A RHO guanine nucleotide 34.7 1.2E+02 0.0042 21.5 7.4 35 5-39 11-45 (56)
95 2hy6_A General control protein 34.4 76 0.0026 20.5 4.5 25 4-28 4-32 (34)
96 1a92_A Delta antigen; leucine 32.9 47 0.0016 23.2 3.6 21 5-25 15-35 (50)
97 2wg5_A General control protein 32.6 37 0.0013 26.2 3.5 24 6-29 9-32 (109)
98 2akf_A Coronin-1A; coiled coil 32.4 96 0.0033 19.6 4.9 25 8-32 3-27 (32)
99 4dzn_A Coiled-coil peptide CC- 32.0 97 0.0033 19.5 5.0 30 5-34 3-32 (33)
100 2xv5_A Lamin-A/C; structural p 31.8 1.3E+02 0.0044 22.0 6.1 38 1-38 2-39 (74)
101 3cvf_A Homer-3, homer protein 31.7 1.6E+02 0.0055 22.0 7.7 43 5-47 35-77 (79)
102 4ani_A Protein GRPE; chaperone 30.5 1.1E+02 0.0039 26.5 6.6 38 5-42 60-97 (213)
103 2fxo_A Myosin heavy chain, car 30.4 1.6E+02 0.0056 23.0 7.0 38 6-43 22-59 (129)
104 2wg5_A General control protein 29.9 51 0.0017 25.4 3.8 25 21-45 10-34 (109)
105 1dh3_A Transcription factor CR 29.3 36 0.0012 23.4 2.6 25 3-27 28-52 (55)
106 1am9_A Srebp-1A, protein (ster 28.8 65 0.0022 23.5 4.1 26 4-29 50-75 (82)
107 2l5g_A GPS2 protein, G protein 27.2 76 0.0026 21.0 3.7 20 4-23 15-34 (38)
108 3m9b_A Proteasome-associated A 26.9 52 0.0018 29.6 3.8 23 8-30 72-94 (251)
109 1ic2_A Tropomyosin alpha chain 26.5 1.8E+02 0.0062 20.9 6.6 26 9-34 25-50 (81)
110 1fxk_A Prefoldin; archaeal pro 26.4 1.1E+02 0.0039 22.3 5.2 40 6-45 67-106 (107)
111 1nlw_A MAD protein, MAX dimeri 26.3 72 0.0024 23.4 3.9 17 8-24 58-74 (80)
112 1fxk_C Protein (prefoldin); ar 26.1 1.9E+02 0.0066 22.1 6.6 41 7-47 91-131 (133)
113 2q6q_A Spindle POLE BODY compo 26.0 1E+02 0.0034 23.0 4.6 40 5-44 4-46 (74)
114 4emc_A Monopolin complex subun 25.6 90 0.0031 27.1 4.9 41 4-44 13-53 (190)
115 3sjb_C Golgi to ER traffic pro 25.4 1.8E+02 0.0063 22.4 6.2 40 4-43 23-74 (93)
116 1fxk_C Protein (prefoldin); ar 25.4 84 0.0029 24.2 4.4 33 12-44 2-34 (133)
117 4b4t_K 26S protease regulatory 25.3 1.3E+02 0.0046 28.2 6.5 41 4-44 49-89 (428)
118 1nkp_A C-MYC, MYC proto-oncoge 24.8 1.1E+02 0.0039 22.6 4.9 29 2-30 57-85 (88)
119 3kqg_A Langerin, C-type lectin 24.1 84 0.0029 24.6 4.2 27 3-29 5-31 (182)
120 1gd2_E Transcription factor PA 24.0 1.6E+02 0.0056 21.3 5.5 35 5-39 30-64 (70)
121 3twe_A Alpha4H; unknown functi 24.0 1.2E+02 0.0043 18.3 3.9 21 7-27 4-24 (27)
122 3sja_C Golgi to ER traffic pro 23.8 2.1E+02 0.0071 20.8 5.9 39 4-42 6-56 (65)
123 1xiw_B T-cell surface glycopro 23.8 18 0.00063 26.4 0.2 28 94-121 17-54 (79)
124 1l8d_A DNA double-strand break 23.8 2.2E+02 0.0076 21.0 6.5 43 2-44 1-43 (112)
125 3oja_B Anopheles plasmodium-re 23.3 2E+02 0.0067 26.8 7.3 30 9-38 535-564 (597)
126 3s4r_A Vimentin; alpha-helix, 23.0 1.5E+02 0.0052 22.3 5.3 11 35-45 59-69 (93)
127 2v71_A Nuclear distribution pr 22.8 2.5E+02 0.0087 24.0 7.3 11 28-38 73-83 (189)
128 2zxx_A Geminin; coiled-coil, c 22.5 57 0.002 24.6 2.8 25 13-37 29-53 (79)
129 1dip_A Delta-sleep-inducing pe 22.2 1.1E+02 0.0037 23.1 4.2 19 5-23 16-34 (78)
130 2p90_A Hypothetical protein CG 22.2 1.2E+02 0.004 27.5 5.3 34 3-36 235-268 (319)
131 1go4_E MAD1 (mitotic arrest de 22.1 1.1E+02 0.0038 23.8 4.4 26 4-29 12-37 (100)
132 3f6n_A Virion-associated prote 21.9 1.2E+02 0.0041 24.8 4.7 31 6-36 4-34 (129)
133 2d7c_C RAB11 family-interactin 21.8 1.3E+02 0.0044 20.1 4.1 23 8-30 5-27 (42)
134 3he4_B Synzip5; heterodimeric 20.9 1.5E+02 0.0051 19.9 4.2 26 4-29 6-31 (46)
135 1a93_B MAX protein, coiled coi 20.8 1.5E+02 0.0052 19.1 4.1 28 2-29 5-32 (34)
136 3cve_A Homer protein homolog 1 20.4 2.6E+02 0.0089 20.5 7.0 38 7-44 31-68 (72)
137 2b5u_A Colicin E3; high resolu 20.1 2.3E+02 0.0078 28.2 7.1 41 3-43 320-360 (551)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=5.5e-36 Score=227.72 Aligned_cols=75 Identities=53% Similarity=0.983 Sum_probs=70.1
Q ss_pred ceeEEecccCCCcccccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCCCCC
Q 025402 78 SRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQC 156 (253)
Q Consensus 78 ~rv~v~~~~~d~s~~~~DGy~WRKYGQK~ikg~~~PRsYYRCs~~~~gC~akKqVQr~~~D~~~~~vtY~G~HnH~~p~ 156 (253)
+||.|++.++ ..+++|||+|||||||.|+|+++||+||||++. ||+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~~--~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~--gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTL--FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP--GCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECS--SSCCCCSSCEEEEEEECCTTCSSCEEEEEECST--TCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCC--CCcCCCCchhhhCcccccCCCCCceeEeEcCCC--CCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 5899999875 468899999999999999999999999999985 79999999999999999999999999999885
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=3.7e-35 Score=224.17 Aligned_cols=74 Identities=47% Similarity=0.903 Sum_probs=66.3
Q ss_pred eeEEecccCCCcccccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCCCCC
Q 025402 79 RIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQC 156 (253)
Q Consensus 79 rv~v~~~~~d~s~~~~DGy~WRKYGQK~ikg~~~PRsYYRCs~~~~gC~akKqVQr~~~D~~~~~vtY~G~HnH~~p~ 156 (253)
+|.|++.++ ..+++|||+|||||||.|+|+++||+||||++. ||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 5 ~~~~~t~s~--~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~--gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 5 SSGVQTTSE--VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP--GCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ---CCCCCC--CCCCCSSSCBCCCEEECCTTCSSCEEEEEEECS--SCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred eEEEeccCC--CCcCCCCchhhhCcccccCCCcCeeEEeecCcC--CCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 677888875 368899999999999999999999999999985 79999999999999999999999999999884
No 3
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=90.89 E-value=0.25 Score=37.60 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~ 30 (253)
.+++.+++|+.++++||+.|++|++.+
T Consensus 41 ~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999987
No 4
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=88.50 E-value=0.34 Score=35.93 Aligned_cols=53 Identities=19% Similarity=0.403 Sum_probs=34.4
Q ss_pred cccccCCccccccCccccCCCCCCcceeecccCC-CCCcccccceeecCCCcEEEEEeccccCCCCC
Q 025402 90 SLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMAS-SGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQ 155 (253)
Q Consensus 90 s~~~~DGy~WRKYGQK~ikg~~~PRsYYRCs~~~-~gC~akKqVQr~~~D~~~~~vtY~G~HnH~~p 155 (253)
..++-|||...+--+ ...+.|.+|+... .+|+|+-.... +. +...+.|||++.
T Consensus 21 ~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 21 RFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---TE----EEECSCCSSCCC
T ss_pred cEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---CC----EECCCCcCCCCc
Confidence 457789998775321 1236899999753 46999855442 21 235688999754
No 5
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=87.35 E-value=2.5 Score=29.57 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
..+..|+.++..+.+-|.+|.++|..--..-..|..+|-.+.
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456689999999999999999999999998899998887763
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=81.23 E-value=4.6 Score=28.68 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
.+.+.|+.++..+..+|..|+.-+..+-.-...|..-|.+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678899999999999999999999988888888766554
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=79.02 E-value=6 Score=27.60 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
..+..|+.+...+..||..|..-+..+.+....|...|+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999999988888888877654
No 8
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=78.79 E-value=8.1 Score=27.24 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
..+..|+.+...+..+|..|..-+..+.+.+..|...|.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999888888877776543
No 9
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=77.03 E-value=2.9 Score=32.36 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 38 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 38 (253)
+.|...|+.|++++..||.++..-++.+-.+|.+|+
T Consensus 54 E~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 54 ENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467778899999999999999999999999998875
No 10
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=75.89 E-value=7.2 Score=30.13 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHhHHHHHHHHHHHHhc
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKA----------------MNNQCNDLLARIHEANRT 47 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~----------------~~~~y~~Lq~~l~~~~~~ 47 (253)
.++..+..||..|+.--+-|.+||+. +.+.|..+|-.|+.+...
T Consensus 6 eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~ 65 (103)
T 1wrd_A 6 EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQ 65 (103)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35788999999999999999999983 467788888888888764
No 11
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=75.27 E-value=4.4 Score=31.08 Aligned_cols=27 Identities=11% Similarity=0.345 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~ 30 (253)
.+++.|++|+..+++||..|+++..++
T Consensus 53 ~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 53 KEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655443
No 12
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.19 E-value=4.1 Score=28.61 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
..+..|+.++..+..||..|..-+..+.+....|...|+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999998888877777766554
No 13
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=74.02 E-value=11 Score=28.34 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
....+..|++||..--.|-++|++.|..-..++..|--.|..+
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl 58 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISG 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh
Confidence 3457889999999999999999999999999998887766554
No 14
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=73.97 E-value=4 Score=31.31 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~ 30 (253)
.+++.+++|+.++++||++|+++-.++
T Consensus 45 ~~ie~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 45 KEIEQKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888888876654
No 15
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=72.64 E-value=8.3 Score=33.97 Aligned_cols=40 Identities=13% Similarity=0.263 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
.+++.|++|+.++++||..|+++..++ ..|..-|-.++..
T Consensus 122 ~~ie~l~eEi~~LkeEn~eLkeLae~~----q~la~vi~~l~~~ 161 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKENKELAEVAEHV----QYMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcC
Confidence 467788888888888888888877766 4444445555543
No 16
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=71.44 E-value=2.9 Score=33.54 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
++.|.+||.|++-||+.|+.-|.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999987665
No 17
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=70.36 E-value=11 Score=34.85 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
|..|+..|+.-|.++.++.+.|+.+|..+..+...|+.+|.+++.+
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888889999999999999999999999999888765
No 18
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=68.55 E-value=6.1 Score=27.49 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQC 34 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y 34 (253)
.++.|+.++..+.+||..|..-|..+.+.|
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999999888876655
No 19
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=68.14 E-value=4.2 Score=32.30 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRH 25 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~ 25 (253)
.+..|++||+|++.||++|..
T Consensus 66 ~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888863
No 20
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.67 E-value=6.5 Score=27.90 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
..+-..|++++..+..|+..|+.+|..
T Consensus 36 ~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 36 EKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355677888899999999999988864
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.58 E-value=17 Score=29.49 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
|+..|..||...+.++..++.-+..+-+.++.|+.++..+
T Consensus 90 E~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 90 EIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555566666666666666655
No 22
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=66.59 E-value=10 Score=24.68 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
+.++.|-.|=..+..|+.||+++|.
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4455566666777888888888874
No 23
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=66.51 E-value=10 Score=30.34 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCND 36 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~ 36 (253)
.|+..|++||......|+||+++-..-...|+.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFRe 36 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRK 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999998877766664
No 24
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=63.37 E-value=10 Score=26.42 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLV 27 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL 27 (253)
.+-..|.+|+..+.+|+..|+.+|
T Consensus 36 ~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 36 SLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567777777777777777665
No 25
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=62.68 E-value=19 Score=27.39 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
..++.+...+..||.+|+.-|..+......|+.-|..+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45666777777888888888887777777777655543
No 26
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=62.25 E-value=15 Score=23.90 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
++.++.|-.|......|..||+++|.
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 34555666666777777888888875
No 27
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=62.24 E-value=16 Score=24.04 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
..++.|..+...+..|..||+++|..
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 44556666667788888899888865
No 28
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=61.75 E-value=9.8 Score=27.94 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNN 32 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~ 32 (253)
.++..|+.+...+..||..|+..|..+..
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666667777777777666543
No 29
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=61.54 E-value=5.6 Score=35.00 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~ 30 (253)
..|.+|-+++++||.+|+..+..+
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~~~ 45 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLESEV 45 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556665555554443
No 30
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=60.33 E-value=13 Score=33.61 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 46 (253)
.++.|+.++..+.+.|++|++.|.........|+.+|..+.+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 366889999999999999999999999999999999988854
No 31
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=58.69 E-value=25 Score=29.51 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHh
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHL-------VKAMNNQCNDLLARIHEANR 46 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~m-------L~~~~~~y~~Lq~~l~~~~~ 46 (253)
.++..|+.||..+..+.+.|.+- +..+.+-|.+||.|+..+-.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888854 45667778888887766543
No 32
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.29 E-value=23 Score=33.05 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
+.|++++..+.+|++.|.+.|..-...-..|.+++.++
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 20 AALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333344444444444444433333334455555554
No 33
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=58.28 E-value=18 Score=27.26 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQ 33 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~ 33 (253)
++.++..|+++|..-+++++.+.++|++....
T Consensus 42 ~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~E 73 (77)
T 3mtu_E 42 FVSEYNDLEEKVAHAKEENLNMHQMLDQTLLE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999876543
No 34
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=58.01 E-value=18 Score=23.49 Aligned_cols=25 Identities=12% Similarity=0.334 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
+.++.|-.|...+..|..||+++|.
T Consensus 8 dKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 8 XKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4455666666777778888888874
No 35
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=57.93 E-value=10 Score=23.08 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENL 23 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL 23 (253)
++|+..|+.|++-++.|.+.|
T Consensus 6 kdevgelkgevralkdevkdl 26 (27)
T 3v86_A 6 KDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHhcc
Confidence 456666666666666666554
No 36
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.44 E-value=19 Score=24.91 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMN 31 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~ 31 (253)
.+++.|+.|+..++.++..|..-+..++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666665555444
No 37
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=57.44 E-value=8.1 Score=25.49 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRH 25 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~ 25 (253)
+++.-.+|+.++++||..|.+
T Consensus 15 ~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 15 EIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHh
Confidence 456667788888888888865
No 38
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=55.42 E-value=16 Score=23.56 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
++.++.|-.|-..+..|..||+++|.
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 34455566666667777777777664
No 39
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=55.06 E-value=17 Score=26.17 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQ 33 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~ 33 (253)
++++-..+--.--++||.||+.+|.+||-.
T Consensus 22 n~lqh~r~vaaaks~en~rlr~l~kqmcps 51 (63)
T 2c9l_Y 22 QLLQHYREVAAAKSSENDRLRLLLKQMCPS 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHhCCc
Confidence 333333333344578999999999999743
No 40
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=53.99 E-value=18 Score=23.54 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
++.++.|-.|...+..|..||+++|.
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 34566666777777888888888774
No 41
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=53.35 E-value=38 Score=28.90 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHHhc
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKA-----------------MNNQCNDLLARIHEANRT 47 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~-----------------~~~~y~~Lq~~l~~~~~~ 47 (253)
.++..+..||..|+.--+-|.+||+. +.+.|..+|-.|+.+...
T Consensus 69 e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 129 (186)
T 1oxz_A 69 EKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 129 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999984 678888899999998864
No 42
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=53.04 E-value=43 Score=27.20 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHHhc
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKA-----------------MNNQCNDLLARIHEANRT 47 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~-----------------~~~~y~~Lq~~l~~~~~~ 47 (253)
.++..+..||..|+.--+-|.+||+. +.+.|..+|-.|+.+...
T Consensus 44 e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e 104 (140)
T 1o3x_A 44 EKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999984 667788888888888754
No 43
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.57 E-value=46 Score=24.99 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCND 36 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~ 36 (253)
.++++.|+.|+.+++-.++.+.--|..+.+.-..
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3555666666666655555555555555443333
No 44
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=52.11 E-value=34 Score=32.22 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=6.8
Q ss_pred cCCcccc--ccCcc
Q 025402 94 KDGHQWR--KYGQK 105 (253)
Q Consensus 94 ~DGy~WR--KYGQK 105 (253)
-|||.-= =|||.
T Consensus 135 l~G~n~tifAYGqT 148 (412)
T 3u06_A 135 LDGYNICIFAYGQT 148 (412)
T ss_dssp HTTCCEEEEEESST
T ss_pred HCCCceEEEEecCC
Confidence 3666543 67764
No 45
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=52.05 E-value=20 Score=26.67 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 41 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 41 (253)
...++.+...+..||..|+.-+..+......|+.-|
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888899999988888877777776544
No 46
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=51.79 E-value=37 Score=28.34 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHHhc
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKA-----------------MNNQCNDLLARIHEANRT 47 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~-----------------~~~~y~~Lq~~l~~~~~~ 47 (253)
.++..+..||..|+.--+-|.+||+. +.+.|..+|-.|+.+...
T Consensus 53 e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 113 (158)
T 1naf_A 53 EKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 113 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999984 677888889999998864
No 47
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=51.64 E-value=28 Score=22.86 Aligned_cols=26 Identities=8% Similarity=0.171 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
..++.|..|-..+..|..||+++|..
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 44555555556677788888888764
No 48
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=51.18 E-value=4.9 Score=24.33 Aligned_cols=9 Identities=22% Similarity=0.988 Sum_probs=7.6
Q ss_pred ceeecccCC
Q 025402 115 AYFRCSMAS 123 (253)
Q Consensus 115 sYYRCs~~~ 123 (253)
.||+|++.|
T Consensus 16 cyykctnrp 24 (26)
T 1cz6_A 16 CYYKCTNRP 24 (26)
T ss_dssp CEEEECCCC
T ss_pred eEEEccCCC
Confidence 699999865
No 49
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=50.66 E-value=47 Score=25.27 Aligned_cols=38 Identities=21% Similarity=0.396 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
..+.+||.+|++.|.-+.--|...-..+..|..+|..+
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999887777776666666666655433
No 50
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=50.39 E-value=60 Score=25.69 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
|.|-=.|+..+.++.+||+||+..-...+..-..|+..+..+.
T Consensus 36 IqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~ 78 (104)
T 3s9g_A 36 IKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLR 78 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 3455578999999999999999876666666777777666554
No 51
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.25 E-value=26 Score=24.58 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
+-..|..|+..+.+|...|+.||.
T Consensus 38 ~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 38 EKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666666653
No 52
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=49.53 E-value=29 Score=24.60 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQ 33 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~ 33 (253)
..+..|+.++..+..||..|..-+..+-+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888998888776665443
No 53
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=49.49 E-value=35 Score=32.40 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
|..|+..|++-+....++.+.|+.+|.....+...|+.+|.+++.+
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4456666777777777788999999999888999999999888764
No 54
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=49.42 E-value=24 Score=33.04 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
+++.|++||..+.++.+.|.+-+..+...+..|+.++.+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666665555555555443
No 55
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=49.15 E-value=9.4 Score=35.22 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
|..|+..|++.+-.+.++.+.|+.+|..+.++...|+.+|..++.+
T Consensus 2 ~~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp --------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888899999999999999999999999988888764
No 56
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.76 E-value=26 Score=33.02 Aligned_cols=10 Identities=10% Similarity=0.282 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 025402 35 NDLLARIHEA 44 (253)
Q Consensus 35 ~~Lq~~l~~~ 44 (253)
..|.++++++
T Consensus 48 r~l~n~~~~l 57 (412)
T 3u06_A 48 KELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3344444444
No 57
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=46.53 E-value=79 Score=23.50 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
++..|++.|.+....-+.|......+...++.|+.|+.+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~e 60 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQ 60 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444455666666667777777766433
No 58
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=46.47 E-value=66 Score=23.95 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
+..|+..+..+.++-++|..-+..+...+..|+.+|.++++.
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 457888888889999999999999999999999999998864
No 59
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.33 E-value=66 Score=26.02 Aligned_cols=40 Identities=5% Similarity=0.100 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
+++.+..|+..++.|+..+..-++.+......|+..+.++
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455555555555555444
No 60
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.04 E-value=67 Score=31.96 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHhHHHHHHHHHHHHhcCC
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAM-----------------NNQCNDLLARIHEANRTYS 49 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~-----------------~~~y~~Lq~~l~~~~~~~~ 49 (253)
..+.+|+.=|+.+..|-+||..-++.- .+.|..+|+||..+....-
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhccc
Confidence 556778888888888999998877753 3689999999999987653
No 61
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=46.04 E-value=36 Score=21.91 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
++.|-.|=..+..|..||+++|.
T Consensus 9 vEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 9 LXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHc
Confidence 34444444556666777777764
No 62
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=45.67 E-value=58 Score=25.72 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
+.++.+++.+..++.|++....-+...-..+..|+.++..
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~ 76 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAE 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444444444444444444444443
No 63
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=45.19 E-value=89 Score=23.72 Aligned_cols=17 Identities=6% Similarity=0.137 Sum_probs=10.6
Q ss_pred HHHhHHHHHHHHHHHHh
Q 025402 30 MNNQCNDLLARIHEANR 46 (253)
Q Consensus 30 ~~~~y~~Lq~~l~~~~~ 46 (253)
.-..|++++.++.++..
T Consensus 58 ~w~eyn~~~~ql~e~~d 74 (96)
T 3q8t_A 58 YQREYSEFKRQQLELDD 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34557777777766643
No 64
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=44.84 E-value=68 Score=27.21 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 38 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 38 (253)
.|++.++.-+.++..||++|.+.|..+-..+..|.
T Consensus 104 ~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 104 EEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45556666666677799999999998877666555
No 65
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=44.78 E-value=21 Score=26.01 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLV 27 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL 27 (253)
++.|+.|+++++.||..|..-|
T Consensus 56 ~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 56 NHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444433
No 66
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=44.70 E-value=81 Score=24.89 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
..+..++-|+++-..|..+|+.+.+.+...+..|+.+|.
T Consensus 44 E~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 44 EQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666777777777777777777776654
No 67
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=43.53 E-value=24 Score=25.89 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCN 35 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~ 35 (253)
-+..|+.+|+.-.+|++.|+..|+.++.-..
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567888899999999999988887754443
No 68
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=43.42 E-value=37 Score=21.47 Aligned_cols=29 Identities=14% Similarity=0.307 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQ 33 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~ 33 (253)
|+..|+.|+.+...||-+|..-+.++...
T Consensus 2 evaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 67889999999999999998877666433
No 69
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=43.38 E-value=45 Score=25.91 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCN 35 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~ 35 (253)
.++..|++||..+.++-+.|-+++..+..+-.
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~ 37 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLR 37 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999988877654433
No 70
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=42.90 E-value=13 Score=27.80 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~ 30 (253)
|-..|+.|+..+..|+..|+.+|.++
T Consensus 51 eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 51 ENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 44566777777777777777766544
No 71
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=42.56 E-value=80 Score=23.98 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
.+++.|++||..+..|-.+|-.-|..+-.....|...|..+
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~l 44 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKV 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35678888888888888888888888888887777777655
No 72
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=42.17 E-value=30 Score=23.81 Aligned_cols=28 Identities=7% Similarity=-0.002 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMN 31 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~ 31 (253)
.++..|++||..-++.++.+.+.|+...
T Consensus 19 k~ID~LEdeL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 19 KLVDDLEDELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4556677777777777777777776643
No 73
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.76 E-value=1.1e+02 Score=23.08 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
..+..|+-|++.++++|..|..-...
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777776654444
No 74
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=41.65 E-value=18 Score=26.46 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025402 8 LLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 8 ~l~~EL~rv~eEN~rL~~mL~ 28 (253)
.+-.||+|++-|-+||..||-
T Consensus 8 ~vl~ELeRlkveiQRLE~ml~ 28 (67)
T 1wmi_B 8 DVLKELERLKVEIQRLEAMLM 28 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 466899999999999999985
No 75
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=40.48 E-value=19 Score=24.94 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMN 31 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~ 31 (253)
=|..+.++++++..||..|++-|..+.
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888887776553
No 76
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=40.11 E-value=34 Score=23.68 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRH 25 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~ 25 (253)
|..+++.|..|..++++++.+|.+
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666654
No 77
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=39.81 E-value=52 Score=21.18 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
++.|-.|-..+..|..||+++|.
T Consensus 9 VEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 9 IEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc
Confidence 34444444556667777777763
No 78
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=39.76 E-value=48 Score=25.14 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNN 32 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~ 32 (253)
|-..|++++..+..|+..|+.+|..+..
T Consensus 51 EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 51 ENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 3455666666777777777776665543
No 79
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=39.42 E-value=36 Score=22.07 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
.++.|-.|=..+..|..||+++|.
T Consensus 9 KvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 9 KLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHccHHHHHHHHHHHHHhc
Confidence 334444444556666777777664
No 80
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=39.16 E-value=30 Score=27.13 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HHHHhHHHHHHHHHHHHhc
Q 025402 8 LLQAKLEHVRKQNENLRHLVK----------------AMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 8 ~l~~EL~rv~eEN~rL~~mL~----------------~~~~~y~~Lq~~l~~~~~~ 47 (253)
.+..||++|+.--+-|.+||+ .+...|..+|-.|+.+...
T Consensus 5 k~~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e 60 (111)
T 1wr6_A 5 KRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASE 60 (111)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888887 4667788888899998754
No 81
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.14 E-value=15 Score=25.59 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLV 27 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL 27 (253)
-..|..|+..+.+|+..|+.+|
T Consensus 38 n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 38 NSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566665555554
No 82
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=39.01 E-value=1e+02 Score=25.62 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
..++..|+.+|..-++.++.+..+|+......+.++.-|..+-
T Consensus 104 Ek~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 104 EKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 3567788999999999999999999988777777776665553
No 83
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.67 E-value=91 Score=21.18 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 41 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 41 (253)
++|+..|+.|-+-++..|---+.++.-+......|++.+
T Consensus 9 enevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 9 ENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555554555555555555555443
No 84
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=38.54 E-value=0.36 Score=38.47 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
.|+..|+.|++++.+||.+|+.-++.+-.+|.+|+.++.
T Consensus 65 ~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~ 103 (107)
T 3a5t_A 65 KQKAELQQEVEKLASENASMKLELDALRSKYEALQNFAR 103 (107)
T ss_dssp HHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455688889999999999999999999999986544
No 85
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=38.15 E-value=66 Score=27.02 Aligned_cols=36 Identities=6% Similarity=-0.024 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 39 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 39 (253)
.|.+.|++|-.+..+.-++-++.|..+...+.++|+
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafkn 40 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKN 40 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999888888888999988888888887
No 86
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=38.04 E-value=52 Score=22.23 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025402 8 LLQAKLEHVRKQNENLRHLV 27 (253)
Q Consensus 8 ~l~~EL~rv~eEN~rL~~mL 27 (253)
.|++.+.-+..||.-|+.+|
T Consensus 21 eLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 21 ELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHh
Confidence 34444444445554444433
No 87
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=38.00 E-value=30 Score=24.55 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVK 28 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~ 28 (253)
..+++.|+.|-..+..|..+|+++|.
T Consensus 36 e~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 36 EDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666654
No 88
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.93 E-value=68 Score=22.07 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 025402 11 AKLEHVRKQNENLRHLVKAMNNQCNDLLARI 41 (253)
Q Consensus 11 ~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 41 (253)
.+.+.++.||..|+.-+..+.+....|+.+|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666555555555555544
No 89
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=37.69 E-value=88 Score=23.83 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMN 31 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~ 31 (253)
.|-+.|..++....+|+..|+.|+..+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666677777776666653
No 90
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=35.46 E-value=1.2e+02 Score=21.83 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
+=+|..|+..++.||++++.-|+.....-..|..-+-.+.
T Consensus 9 VYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~ 48 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888999988888877666666665555444
No 91
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=35.45 E-value=48 Score=20.69 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025402 9 LQAKLEHVRKQNENLRHLVKAMN 31 (253)
Q Consensus 9 l~~EL~rv~eEN~rL~~mL~~~~ 31 (253)
|.+=|.-+..||++|+.-++.+.
T Consensus 4 lnallasleaenkqlkakveell 26 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556678888887666554
No 92
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=35.33 E-value=1.1e+02 Score=27.02 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
.|-+.|..++....+|+.+|++|+..+-+.-..+| +|.+++.+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q-~la~vi~~ 157 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ-YMAELIER 157 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45677888888888888888888888866666555 35555544
No 93
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=34.69 E-value=8.2 Score=30.23 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHL 26 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~m 26 (253)
..|+..|-.||..++.||.+|+++
T Consensus 49 QrQv~qLt~~lQ~~~~Ene~Lke~ 72 (95)
T 3n7n_E 49 QRQIAQLNKQLQLSFQENEKLLSV 72 (95)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999985
No 94
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=34.68 E-value=1.2e+02 Score=21.51 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 39 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 39 (253)
-+=+|..|+..++.||++|+..|+.=-..-..|..
T Consensus 11 tVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888877765444444433
No 95
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=34.39 E-value=76 Score=20.52 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=14.5
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKL----EHVRKQNENLRHLVK 28 (253)
Q Consensus 4 ~el~~l~~EL----~rv~eEN~rL~~mL~ 28 (253)
+|++.-++|| ..+..|..||+++|.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3444444444 455566777777764
No 96
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=32.86 E-value=47 Score=23.17 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRH 25 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~ 25 (253)
.++.|+.+|+++++.+++|.+
T Consensus 15 k~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 15 KLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 467899999999999999875
No 97
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=32.62 E-value=37 Score=26.19 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
+..|+++++.+++|.++|++-|..
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~ 32 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVAR 32 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666654443
No 98
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=32.38 E-value=96 Score=19.60 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 8 LLQAKLEHVRKQNENLRHLVKAMNN 32 (253)
Q Consensus 8 ~l~~EL~rv~eEN~rL~~mL~~~~~ 32 (253)
.|++||+.++.-.++|.+-|+++.+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777777776644
No 99
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=32.04 E-value=97 Score=19.54 Aligned_cols=30 Identities=13% Similarity=0.325 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQC 34 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y 34 (253)
|+.+|+.|+.-++.|-.-|+.-+..+...|
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 677888888888888888877776665444
No 100
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=31.77 E-value=1.3e+02 Score=22.00 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 025402 1 MMILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 38 (253)
Q Consensus 1 ~~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 38 (253)
++..|.+.++.-|..+.+|-.+++.=+......|..|-
T Consensus 2 ~l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 39 (74)
T 2xv5_A 2 GSARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELL 39 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777766666666666543
No 101
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=31.67 E-value=1.6e+02 Score=21.99 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
+++.-+.|=++++.|-++|-+.|+.-...-..|+..|..+...
T Consensus 35 ~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~~ 77 (79)
T 3cvf_A 35 SLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAEA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccc
Confidence 3444444445566777777777776556666777777666543
No 102
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=30.54 E-value=1.1e+02 Score=26.51 Aligned_cols=38 Identities=8% Similarity=0.204 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
|++.|+++|..+.++...|+.-+-++...|..++.+..
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888887777777766666666554
No 103
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=30.35 E-value=1.6e+02 Score=22.96 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
+..|++.|.+....-+.|..-...+....+.|+.+|..
T Consensus 22 l~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~ 59 (129)
T 2fxo_A 22 FTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQA 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555555556666655543
No 104
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=29.86 E-value=51 Score=25.42 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402 21 ENLRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 21 ~rL~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
++|+..+..+.+.+..|+..+..+.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666667777777766663
No 105
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.34 E-value=36 Score=23.44 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLV 27 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL 27 (253)
+.++..|+.|-..+..++..|+.++
T Consensus 28 E~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 28 ENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777776666543
No 106
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=28.77 E-value=65 Score=23.51 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
.=+..|+.++.++.+||..|+..+..
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888888888888888877654
No 107
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.17 E-value=76 Score=20.98 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENL 23 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL 23 (253)
.|+..|+.+|..+++|-.+|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666555554
No 108
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.94 E-value=52 Score=29.58 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025402 8 LLQAKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 8 ~l~~EL~rv~eEN~rL~~mL~~~ 30 (253)
.|+++|++.+.|..+|++-|+.+
T Consensus 72 ~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 72 KLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666655554
No 109
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=26.51 E-value=1.8e+02 Score=20.94 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 025402 9 LQAKLEHVRKQNENLRHLVKAMNNQC 34 (253)
Q Consensus 9 l~~EL~rv~eEN~rL~~mL~~~~~~y 34 (253)
++.+|......+.++..-|..+..+.
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~kKi 50 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQKKL 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333333333333333333333333
No 110
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.38 E-value=1.1e+02 Score=22.27 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 45 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 45 (253)
+..|+..++.+.++-++|..-+..+......|+.+|.+++
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~ 106 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAM 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777778888888888888888888887776543
No 111
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=26.33 E-value=72 Score=23.42 Aligned_cols=17 Identities=6% Similarity=0.380 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025402 8 LLQAKLEHVRKQNENLR 24 (253)
Q Consensus 8 ~l~~EL~rv~eEN~rL~ 24 (253)
.|++|.+++..||+.|+
T Consensus 58 ~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 58 KAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 112
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.15 E-value=1.9e+02 Score=22.09 Aligned_cols=41 Identities=7% Similarity=0.136 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 47 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 47 (253)
+.|+..+..+.+.-++|..-|..+.+.+..++..|.++++.
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45777777777788888888888888888888888887653
No 113
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=26.02 E-value=1e+02 Score=22.98 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAM---NNQCNDLLARIHEA 44 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~---~~~y~~Lq~~l~~~ 44 (253)
|-..|...|.+-++|-.||.-+++.+ ..+|..|-..|.+-
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~ 46 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQ 46 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666665554433 35566665555443
No 114
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.61 E-value=90 Score=27.07 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
.+++.-...+..+..||..|..-|+.-...-.+||.+|..+
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl 53 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSL 53 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444334444555566666666665555555666655554
No 115
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=25.44 E-value=1.8e+02 Score=22.42 Aligned_cols=40 Identities=10% Similarity=0.163 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNE------------NLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~------------rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
.+...|+.|+.+++.|++ ||+.-++.+.+.+..|..+|..
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888764 6667777777777777766554
No 116
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.42 E-value=84 Score=24.21 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 12 KLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 12 EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
|+.++.+.-++|..++..+......|+..+.++
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~ 34 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISEL 34 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666665555555555555555
No 117
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.31 E-value=1.3e+02 Score=28.17 Aligned_cols=41 Identities=10% Similarity=0.238 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
.+++.|+.|++.+..|+..|+.-+..+...|..++.++..+
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888888888888888887665
No 118
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.79 E-value=1.1e+02 Score=22.59 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~ 30 (253)
+..+...|+.|++++..+|..|..-|..+
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 119
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=24.07 E-value=84 Score=24.57 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
..|++.|+.+|..++..+.++..+-..
T Consensus 5 ~~~~~~l~~~~~~~~~l~~~~~~l~~~ 31 (182)
T 3kqg_A 5 NAQIPELKSDLEKASALNTKIRALQGS 31 (182)
T ss_dssp --------CHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665544444444333
No 120
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.05 E-value=1.6e+02 Score=21.28 Aligned_cols=35 Identities=9% Similarity=0.187 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 39 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 39 (253)
.+..|+.++..+..+|..|..-...+-.....|+.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777665444334333344443
No 121
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.04 E-value=1.2e+02 Score=18.30 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLV 27 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL 27 (253)
..|-.||+.++|.-++|+.-|
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666544
No 122
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=23.83 E-value=2.1e+02 Score=20.78 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNE------------NLRHLVKAMNNQCNDLLARIH 42 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~------------rL~~mL~~~~~~y~~Lq~~l~ 42 (253)
.+...|+.|+.+++.|++ ||+.-++.+.+.|..|...|.
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677778888877764 677777777777777776654
No 123
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=23.81 E-value=18 Score=26.43 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=19.2
Q ss_pred cCCccccccCccc--------cC--CCCCCcceeeccc
Q 025402 94 KDGHQWRKYGQKV--------TK--DNPSPRAYFRCSM 121 (253)
Q Consensus 94 ~DGy~WRKYGQK~--------ik--g~~~PRsYYRCs~ 121 (253)
.+++.|-|-|... +. ...-||.||.|..
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~ 54 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNG 54 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecC
Confidence 6778999988642 22 3345999999954
No 124
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.75 E-value=2.2e+02 Score=20.99 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
|...++.++.++..+.++-..|+.....+...-..|+..+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 1 MKKLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777777777776666665556566555444
No 125
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.29 E-value=2e+02 Score=26.79 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 025402 9 LQAKLEHVRKQNENLRHLVKAMNNQCNDLL 38 (253)
Q Consensus 9 l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 38 (253)
.+++++.+++|..+|+..++..-+....|+
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 334444444444444444444444444333
No 126
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=23.01 E-value=1.5e+02 Score=22.26 Aligned_cols=11 Identities=9% Similarity=0.311 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 025402 35 NDLLARIHEAN 45 (253)
Q Consensus 35 ~~Lq~~l~~~~ 45 (253)
..|+.+|.++.
T Consensus 59 ~~Lr~~i~~~~ 69 (93)
T 3s4r_A 59 RELRRQVDQLT 69 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555443
No 127
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.83 E-value=2.5e+02 Score=23.99 Aligned_cols=11 Identities=9% Similarity=0.238 Sum_probs=4.3
Q ss_pred HHHHHhHHHHH
Q 025402 28 KAMNNQCNDLL 38 (253)
Q Consensus 28 ~~~~~~y~~Lq 38 (253)
..+-.+|..++
T Consensus 73 e~~k~K~~~~~ 83 (189)
T 2v71_A 73 EALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 128
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.52 E-value=57 Score=24.57 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 025402 13 LEHVRKQNENLRHLVKAMNNQCNDL 37 (253)
Q Consensus 13 L~rv~eEN~rL~~mL~~~~~~y~~L 37 (253)
|..+=+||++|-.-|+..-+-...|
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~L 53 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARL 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666655555444333333
No 129
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=22.18 E-value=1.1e+02 Score=23.06 Aligned_cols=19 Identities=16% Similarity=0.511 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025402 5 QMKLLQAKLEHVRKQNENL 23 (253)
Q Consensus 5 el~~l~~EL~rv~eEN~rL 23 (253)
|++.|++.+..+.+.|.+|
T Consensus 16 EVevLKe~I~EL~e~~~qL 34 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQL 34 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 130
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=22.16 E-value=1.2e+02 Score=27.48 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCND 36 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~ 36 (253)
..+.+..++++.++.+++..+.+++..+-+.|.+
T Consensus 235 ~e~A~~~e~~i~~l~~~~~e~~~~V~~LE~~~D~ 268 (319)
T 2p90_A 235 ERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDS 268 (319)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 4567788999999999999999999999888876
No 131
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.12 E-value=1.1e+02 Score=23.85 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
.++..|..|+..+..||.+|++-++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~ 37 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRM 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777788777765544
No 132
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=21.91 E-value=1.2e+02 Score=24.77 Aligned_cols=31 Identities=10% Similarity=0.249 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025402 6 MKLLQAKLEHVRKQNENLRHLVKAMNNQCND 36 (253)
Q Consensus 6 l~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~ 36 (253)
+..+++|++.+.++.+.|..++.+|.++-..
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4677888888889999998888887655443
No 133
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=21.81 E-value=1.3e+02 Score=20.10 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025402 8 LLQAKLEHVRKQNENLRHLVKAM 30 (253)
Q Consensus 8 ~l~~EL~rv~eEN~rL~~mL~~~ 30 (253)
.|.+.|.+-.+.|++|+.-++.+
T Consensus 5 eL~~~l~~qee~n~~Le~YID~L 27 (42)
T 2d7c_C 5 ELMEAIQKQEEINFRLQDYIDRI 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788899999888765
No 134
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.93 E-value=1.5e+02 Score=19.87 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 4 LQMKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 4 ~el~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
.|+.....||++-+.|-+.|+++|.-
T Consensus 6 kelknyiqeleernaelknlkehlkf 31 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEHLKF 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 46677778888888888899988864
No 135
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.83 E-value=1.5e+02 Score=19.08 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402 2 MILQMKLLQAKLEHVRKQNENLRHLVKA 29 (253)
Q Consensus 2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~ 29 (253)
|-.+..+.+.+++.++..|..|.+-+..
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 5567788999999999999999876543
No 136
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.39 E-value=2.6e+02 Score=20.52 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 025402 7 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 44 (253)
Q Consensus 7 ~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 44 (253)
+.-+.|=++++.|-++|-+.|+.-...-..|+..|..+
T Consensus 31 e~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 31 EKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 33333444555666666666665444455566555554
No 137
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.09 E-value=2.3e+02 Score=28.15 Aligned_cols=41 Identities=7% Similarity=0.003 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402 3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 43 (253)
Q Consensus 3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 43 (253)
+.|++.+++||..+.+...++.+-++.-..-|+.+++.|.+
T Consensus 320 er~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~ 360 (551)
T 2b5u_A 320 ERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDA 360 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 35677888888888777788888777666777777766644
Done!