BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025403
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 213 bits (543), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 133/224 (59%), Gaps = 3/224 (1%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWARTLCTHH 85
A N C TVWPG L+G P L TGFEL S SR++ P WSGR W RT C+
Sbjct: 1 AKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTD 60
Query: 86 QNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVP 145
F+C T DCGS ++ C TL E T+ GG D+YDVSLVDG+NLPM V P
Sbjct: 61 AAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAP 120
Query: 146 KXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATPD 205
+ C ++N CPA L+V + G ++CKSAC AFGD +YCC+ TP+
Sbjct: 121 Q-GGTGECKPSSCPANVNKVCPAPLQV-KAADGSVISCKSACLAFGDSKYCCTPPNNTPE 178
Query: 206 TCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTC-GSADYVIIFCP 248
TC P+ YS F+ CP+AYSYAYDDK ST+TC G DYVI FCP
Sbjct: 179 TCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 130/225 (57%), Gaps = 5/225 (2%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWARTLCTHH 85
A+ N C VWPG L+ P L TTGFEL S S + P W+GR WART C+
Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTD 60
Query: 86 QNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVP 145
+ F C T DC S ++ C TLAEF + GG DFYDVSLVDG+NLPM V P
Sbjct: 61 ASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTP 120
Query: 146 KXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGS-VACKSACEAFGDPRYCCSEAYATP 204
+ C ++N CP+EL+ ++G GS VAC SAC FG P+YCC+ TP
Sbjct: 121 Q-GGTGDCKTASCPANVNAVCPSELQ--KKGSDGSVVACLSACVKFGTPQYCCTPPQNTP 177
Query: 205 DTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTC-GSADYVIIFCP 248
+TC P+ YS F + CP AYSYAYDDK T+TC G +Y I FCP
Sbjct: 178 ETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 146 bits (369), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 118/225 (52%), Gaps = 29/225 (12%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITI-PKSWSGRIWARTLCTH 84
A+F ++NKC TVW G G L SG+S TIT+ P + + RIW RT CT
Sbjct: 1 ATFDILNKCTYTVWAAASPGG--------GRRLDSGQSWTITVNPGTTNARIWGRTSCTF 52
Query: 85 HQNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVV 144
N C TGDC + LEC TLAEF LN LD+ D+SLVDG+N+PM
Sbjct: 53 DANGRGKCETGDC-NGLLECQGYGSPPN-TLAEFALNQPNNLDYIDISLVDGFNIPM--- 107
Query: 145 PKXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATP 204
C VD+NG CP+ELK GG C + C F YCC++ P
Sbjct: 108 ----DFSGCRGIQCSVDINGQCPSELKAP----GG---CNNPCTVFKTNEYCCTDG---P 153
Query: 205 DTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGSA-DYVIIFCP 248
+C P+ YS FFK CP AYSY DDKTS +TC S +Y + FCP
Sbjct: 154 GSCGPTTYSKFFKDRCPDAYSYPQDDKTSLFTCPSGTNYKVTFCP 198
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 115/225 (51%), Gaps = 27/225 (12%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITI-PKSWSGRIWARTLCTH 84
A+F++VN+C TVW + +P G +L G+S TI + + GRIW RT C+
Sbjct: 1 ATFEIVNRCSYTVW--------AAAVPGGGRQLNQGQSWTINVNAGTTGGRIWGRTGCSF 52
Query: 85 HQNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVV 144
+ C TGDCG L C TLAEF LN LDF+D+SLVDG+N+PM
Sbjct: 53 DGSGRGRCQTGDCGG-VLSCTAYGNPPN-TLAEFALNQFNNLDFFDISLVDGFNVPMDFS 110
Query: 145 PKXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATP 204
P C D+NG CP LK C + C F +YCC+
Sbjct: 111 PTSGGCRGIR---CAADINGQCPGALKAPG-------GCNNPCTVFKTDQYCCNSG---- 156
Query: 205 DTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTC-GSADYVIIFCP 248
C P+ YS FFK CP AYSY DD+T+T+TC G +Y ++FCP
Sbjct: 157 -ACSPTDYSQFFKRNCPDAYSYPKDDQTTTFTCPGGTNYRVVFCP 200
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 118/226 (52%), Gaps = 24/226 (10%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWS-GRIWARTLCTH 84
A+ ++ N C TVW A S P+ G L G++ I P+ R+W RT C
Sbjct: 1 ATIEVRNNCPYTVW------AASTPI-GGGRRLDRGQTWVINAPRGTKMARVWGRTNCNF 53
Query: 85 HQNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVV 144
+ +C TGDCG L+C TLAE+ L+ GLDF+D+SLVDG+N+PM
Sbjct: 54 NAAGRGTCQTGDCGG-VLQCTGWGKPPN-TLAEYALDQFSGLDFWDISLVDGFNIPMTFA 111
Query: 145 PKXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATP 204
P C ++NG CP EL+V GG C + C FG +YCC++
Sbjct: 112 PTNPSGGKCHAIHCTANINGECPRELRVP----GG---CNNPCTTFGGQQYCCTQG---- 160
Query: 205 DTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTC--GSADYVIIFCP 248
C P+ +S FFK CP AYSY DD TST+TC GS +Y +IFCP
Sbjct: 161 -PCGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 121/225 (53%), Gaps = 21/225 (9%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPK-SWSGRIWARTLCTH 84
A F +VN+C TVW A S P+ G +L G+S IT P + + RIWART C
Sbjct: 1 AVFTVVNQCPFTVW------AASVPV-GGGRQLNRGESWRITAPAGTTAARIWARTGCKF 53
Query: 85 HQNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVV 144
+ SC TGDCG L+C TLAE+ L LDF+D+SL+DG+N+PM +
Sbjct: 54 DASGRGSCRTGDCGGV-LQCTGYGRAPN-TLAEYALKQFNNLDFFDISLIDGFNVPMSFL 111
Query: 145 PKXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATP 204
P C VD+N CPAEL+ ++G C +AC F YCC + A
Sbjct: 112 PDGGSGCSRGPR-CAVDVNARCPAELR--QDG-----VCNNACPVFKKDEYCCVGSAA-- 161
Query: 205 DTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTC-GSADYVIIFCP 248
+ C P+ YS +FK CP AYSY DD TST+TC +Y ++FCP
Sbjct: 162 NDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 115/226 (50%), Gaps = 24/226 (10%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWS-GRIWARTLCTH 84
A+ ++ N C TVW A S P+ G L G++ I P+ RIW RT C
Sbjct: 1 ATIEVRNNCPYTVW------AASTPI-GGGRRLNRGQTWVINAPRGTKMARIWGRTGCNF 53
Query: 85 HQNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVV 144
+ +C TGDCG L+C TLAE+ L+ LDF+D+SLVDG+N+PM
Sbjct: 54 NAAGRGTCQTGDCGG-VLQCTGWGKPPN-TLAEYALDQFSNLDFWDISLVDGFNIPMTFA 111
Query: 145 PKXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATP 204
P C ++NG CP LKV GG C + C FG +YCC++
Sbjct: 112 PTKPSGGKCHAIHCTANINGECPRALKVP----GG---CNNPCTTFGGQQYCCTQG---- 160
Query: 205 DTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTC--GSADYVIIFCP 248
C P+ S FFK CP AYSY DD TST+TC GS +Y ++FCP
Sbjct: 161 -PCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 112/224 (50%), Gaps = 20/224 (8%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITI-PKSWSGRIWARTLCTH 84
A+F++VN+C TVW G L G +L SG+S TI + P + G+IWART C
Sbjct: 1 ATFEIVNRCSYTVWAAASKG--DAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 85 HQNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVV 144
+ + C TGDCG L C TLAEF+LN G D+ D+S + G+N+PM
Sbjct: 59 DDSGSGICKTGDCGGL-LRCKRFGRPPT-TLAEFSLNQYG-KDYIDISNIKGFNVPMNFS 115
Query: 145 PKXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATP 204
P C D+ G CPA+LK G C AC F YCC T
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGGG------CNDACTVFQTSEYCC-----TT 161
Query: 205 DTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGSADYVIIFCP 248
C P+ YS FFK +CP A+SY D T+ GS++Y + FCP
Sbjct: 162 GKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 112/224 (50%), Gaps = 20/224 (8%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITI-PKSWSGRIWARTLCTH 84
A+F++VN+C TVW G L G +L SG+S TI + P + G+IWART C
Sbjct: 1 ATFEIVNRCSYTVWAAASKG--DAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 85 HQNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVV 144
+ + C TGDCG L C TLAEF+LN G D+ D+S + G+N+PM
Sbjct: 59 DDSGSGICKTGDCGGL-LRCKRFGRPPT-TLAEFSLNQYG-KDYIDISNIKGFNVPMNFS 115
Query: 145 PKXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATP 204
P C D+ G CPA+LK G C AC F YCC T
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGGG------CNDACTVFQTSEYCC-----TT 161
Query: 205 DTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGSADYVIIFCP 248
C P+ YS FFK +CP A+SY D T+ GS++Y + FCP
Sbjct: 162 GKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 112/224 (50%), Gaps = 20/224 (8%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITI-PKSWSGRIWARTLCTH 84
A+F++VN+C TVW G L G +L SG+S TI + P + G+IWART C
Sbjct: 1 ATFEIVNRCSYTVWAAASKG--DAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYF 58
Query: 85 HQNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVV 144
+ + C TGDCG L C TLAEF+LN G D+ D+S + G+N+PM
Sbjct: 59 DDSGSGICKTGDCGGL-LRCKRFGRPPT-TLAEFSLNQYG-KDYIDISNIKGFNVPMDFS 115
Query: 145 PKXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATP 204
P C D+ G CPA+LK G C AC F YCC T
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGGG------CNDACTVFQTSEYCC-----TT 161
Query: 205 DTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGSADYVIIFCP 248
C P+ YS FFK +CP A+SY D T+ GS++Y + FCP
Sbjct: 162 GKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 127 bits (318), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 112/224 (50%), Gaps = 20/224 (8%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITI-PKSWSGRIWARTLCTH 84
A+F++VN+C TVW G L G +L SG+S TI + P + G+IWART C
Sbjct: 1 ATFEIVNRCSYTVWAAASKG--DAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYF 58
Query: 85 HQNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVV 144
+ C TGDCG L+C TLAEF+LN G D+ D+S + G+N+PM
Sbjct: 59 DDSGRGICRTGDCGGL-LQCKRFGRPPT-TLAEFSLNQYG-KDYIDISNIKGFNVPMDFS 115
Query: 145 PKXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATP 204
P C D+ G CPA+LK G C AC F YCC T
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGGG------CNDACTVFQTSEYCC-----TT 161
Query: 205 DTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGSADYVIIFCP 248
C P+ YS FFK +CP A+SY D T+ GS++Y + FCP
Sbjct: 162 GKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 112/224 (50%), Gaps = 20/224 (8%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITI-PKSWSGRIWARTLCTH 84
A+F++VN+C TVW G L G +L SG+S TI + P + G+IWART C
Sbjct: 1 ATFEIVNRCSYTVWAAASKG--DAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 85 HQNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVV 144
+ + C TGDCG L C TLAEF+LN G D+ D+S + G+N+PM
Sbjct: 59 DDSGSGICKTGDCGGL-LRCKRFGRPPT-TLAEFSLNQYG-KDYIDISNIKGFNVPMDFS 115
Query: 145 PKXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATP 204
P C D+ G CPA+LK G C AC F YCC T
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGGG------CNDACTVFQTSEYCC-----TT 161
Query: 205 DTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGSADYVIIFCP 248
C P+ YS FFK +CP A+SY D T+ GS++Y + FCP
Sbjct: 162 GKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 111/224 (49%), Gaps = 20/224 (8%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITI-PKSWSGRIWARTLCTH 84
A+F++VN+C TVW G L G +L SG+S TI + P + G+IWART C
Sbjct: 1 ATFEIVNRCSYTVWAAASKG--DAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXF 58
Query: 85 HQNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVV 144
+ + C TGDCG L C TLAEF+LN G D+ D+S + G+N+PM
Sbjct: 59 DDSGSGICKTGDCGGL-LRCKRFGRPPT-TLAEFSLN-QXGKDYIDISNIKGFNVPMNFS 115
Query: 145 PKXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATP 204
P C D+ G CPA+LK G C AC F YCC T
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGGG------CNDACTVFQTSEYCC-----TT 161
Query: 205 DTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGSADYVIIFCP 248
C P+ S FFK +CP A+SY D T+ GS++Y + FCP
Sbjct: 162 GKCGPTEXSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 108/224 (48%), Gaps = 24/224 (10%)
Query: 28 FKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWS-GRIWARTLCTHHQ 86
F++ N C TVW A + P+ G L+ G+S P RIW RT C
Sbjct: 4 FEVHNNCPYTVW------AAATPV-GGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDG 56
Query: 87 NQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPK 146
C TGDCG LEC TLAE+ LN LDF+D+S++DG+N+PM P
Sbjct: 57 AGRGWCQTGDCGG-VLECKGWGKPPN-TLAEYALNQFSNLDFWDISVIDGFNIPMSFGPT 114
Query: 147 XXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATPDT 206
C ++NG CP L+V C + C FG +YCC++
Sbjct: 115 KPGPGKCHGIQCTANINGECPGSLRVPG-------GCNNPCTTFGGQQYCCTQG-----P 162
Query: 207 CFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGS--ADYVIIFCP 248
C P+ S +FK CP AYSY DD TST+TC S DY ++FCP
Sbjct: 163 CGPTELSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 110/224 (49%), Gaps = 20/224 (8%)
Query: 26 ASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITI-PKSWSGRIWARTLCTH 84
A+F++VN+C TVW G L G +L SG+S TI + P + G+IWART C
Sbjct: 1 ATFEIVNRCSXTVWAAASKG--DAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXF 58
Query: 85 HQNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPMLVV 144
+ + C TGDCG L C TLAEF+LN G D D+S + G+N+PM
Sbjct: 59 DDSGSGICKTGDCGGL-LRCKRFGRPPT-TLAEFSLN-QXGKDXIDISNIKGFNVPMNFS 115
Query: 145 PKXXXXXXXXXXXCLVDLNGACPAELKVAREGRGGSVACKSACEAFGDPRYCCSEAYATP 204
P C D+ G CPA+LK G C AC F YCC T
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGGG------CNDACTVFQTSEYCC-----TT 161
Query: 205 DTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGSADYVIIFCP 248
C P+ S FFK +CP A+SY D T+ GS++Y + FCP
Sbjct: 162 GKCGPTEXSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 26 ASFKMVNKCRRTVWPG----LLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWARTL 81
A + N+C TVWP L G G EL G S ++ P S IW RT
Sbjct: 1 APLTITNRCHFTVWPAVALVLAQGGG-------GTELHPGASWSLDTPVIGSQYIWGRTG 53
Query: 82 CTHHQNQTFSCVTGDCGSQKLECXXXXXXXXXTLAEFTLNGAGGLDFYDVSLVDGYNLPM 141
C+ + C TGDCG L C T+AE ++ G + S + G+N+PM
Sbjct: 54 CSFDRAGKGRCQTGDCGGSSLTC-GGNPAVPTTMAEVSVL-QGNYTYGVTSTLKGFNVPM 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,295,201
Number of Sequences: 62578
Number of extensions: 275715
Number of successful extensions: 479
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 16
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)