Query 025403
Match_columns 253
No_of_seqs 144 out of 690
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 8.4E-86 1.8E-90 579.9 18.9 218 27-247 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 2.2E-83 4.8E-88 564.5 18.2 216 28-248 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 7.9E-83 1.7E-87 562.9 17.3 214 28-248 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 1.2E-79 2.7E-84 540.4 8.2 212 32-248 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 1E-59 2.2E-64 395.8 14.3 155 28-247 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 8.9E-52 1.9E-56 346.1 13.8 149 28-248 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 1.5E-50 3.2E-55 339.2 14.1 152 28-246 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 98.2 4.5E-05 9.8E-10 64.4 13.3 37 111-147 72-111 (155)
9 cd09216 GH64-LPHase-like glyco 96.1 0.035 7.7E-07 52.8 9.3 111 27-147 2-143 (353)
10 cd09220 GH64-GluB-like glycosi 95.3 0.13 2.9E-06 49.2 9.9 113 27-147 2-146 (369)
11 PRK02710 plastocyanin; Provisi 78.3 7.4 0.00016 31.0 6.0 15 54-68 47-61 (119)
12 PF07172 GRP: Glycine rich pro 75.5 2.1 4.6E-05 33.4 2.1 28 1-28 1-28 (95)
13 cd09214 GH64-like glycosyl hyd 69.0 4 8.7E-05 38.5 2.7 32 115-148 125-156 (319)
14 PF08194 DIM: DIM protein; In 63.7 9.2 0.0002 24.8 2.8 20 15-34 13-32 (36)
15 cd05468 pVHL von Hippel-Landau 57.0 18 0.00038 30.0 4.2 51 24-80 7-57 (141)
16 cd09214 GH64-like glycosyl hyd 56.7 4.9 0.00011 37.9 0.9 22 210-231 276-299 (319)
17 cd09220 GH64-GluB-like glycosi 53.6 6 0.00013 38.1 1.0 22 210-231 321-344 (369)
18 KOG4063 Major epididymal secre 51.9 13 0.00028 31.7 2.5 16 1-16 1-16 (158)
19 PF13978 DUF4223: Protein of u 51.0 18 0.00039 25.3 2.7 35 2-38 1-35 (56)
20 cd09216 GH64-LPHase-like glyco 47.1 8.8 0.00019 36.8 1.0 22 210-231 310-333 (353)
21 PHA03094 dUTPase; Provisional 45.2 23 0.00051 29.3 3.1 28 55-82 35-68 (144)
22 PF01847 VHL: von Hippel-Linda 43.9 21 0.00046 30.4 2.7 51 22-78 11-61 (156)
23 PRK09918 putative fimbrial cha 41.9 82 0.0018 28.0 6.3 46 23-68 39-90 (230)
24 COG5510 Predicted small secret 39.7 31 0.00067 23.3 2.4 12 1-12 1-12 (44)
25 PRK15211 fimbrial chaperone pr 38.5 1.1E+02 0.0024 27.4 6.6 46 23-68 37-89 (229)
26 PRK10081 entericidin B membran 38.4 31 0.00067 23.7 2.3 9 1-9 1-9 (48)
27 PRK10002 outer membrane protei 37.8 37 0.0008 32.0 3.6 35 1-40 1-35 (362)
28 PF11142 DUF2917: Protein of u 32.8 50 0.0011 23.6 2.8 23 56-78 2-29 (63)
29 PF04202 Mfp-3: Foot protein 3 32.3 39 0.00086 24.8 2.2 22 2-23 1-22 (71)
30 PF06282 DUF1036: Protein of u 31.0 75 0.0016 25.3 3.9 41 25-66 3-44 (115)
31 PRK15195 fimbrial chaperone pr 29.1 1.8E+02 0.0039 25.9 6.3 44 24-68 41-92 (229)
32 PF12276 DUF3617: Protein of u 27.4 41 0.00089 27.6 1.8 30 101-134 108-137 (162)
33 PRK15241 putative fimbrial pro 26.3 86 0.0019 27.2 3.7 9 114-122 94-102 (188)
34 cd07557 trimeric_dUTPase Trime 25.6 92 0.002 22.9 3.3 27 55-81 13-45 (92)
35 PRK09733 putative fimbrial pro 25.5 90 0.002 26.3 3.7 10 113-122 87-96 (181)
36 PF05726 Pirin_C: Pirin C-term 24.6 82 0.0018 24.2 3.0 26 56-81 4-29 (104)
37 COG3121 FimC P pilus assembly 23.3 2.9E+02 0.0062 24.7 6.6 46 23-68 42-95 (235)
38 PF05991 NYN_YacP: YacP-like N 23.3 26 0.00057 29.5 -0.1 10 133-142 2-11 (166)
39 PRK03719 ecotin; Provisional 22.7 3.6E+02 0.0079 23.2 6.7 23 114-137 85-107 (166)
40 PF00947 Pico_P2A: Picornaviru 22.1 36 0.00077 28.1 0.5 17 88-105 83-99 (127)
41 PLN02547 dUTP pyrophosphatase 22.0 1E+02 0.0022 25.9 3.3 27 55-81 46-78 (157)
42 PTZ00102 disulphide isomerase; 21.1 74 0.0016 30.5 2.5 13 1-13 1-13 (477)
43 PF15240 Pro-rich: Proline-ric 21.0 69 0.0015 27.9 2.0 19 6-24 2-20 (179)
44 PRK09810 entericidin A; Provis 21.0 82 0.0018 21.0 1.9 9 1-9 1-9 (41)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=8.4e-86 Score=579.94 Aligned_cols=218 Identities=62% Similarity=1.202 Sum_probs=208.2
Q ss_pred EEEEEeCCCCcccceeecCCCCCCCCCCCeeecCCCEEEEecCCCCceeeeeecccccCCCCcccccCCCCCCCccccCC
Q 025403 27 SFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWARTLCTHHQNQTFSCVTGDCGSQKLECAG 106 (253)
Q Consensus 27 t~tv~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriWaRtgCs~~~~g~~~C~TGdC~~g~~~C~~ 106 (253)
+|||+|||+||||||+++++|++++..+||+|+||++++|++|++|+|||||||+|++|+.|+++|+||||+ |+|+|++
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCg-g~l~C~g 79 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCG-GGLECNG 79 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCC-CeeecCC
Confidence 599999999999999999999999888999999999999999999999999999999999999999999999 8999998
Q ss_pred CCCCCCcceEEEEecCCCCcccccccccCcccCcceeeecCCCCCCCCCccccccccccCCccccccccCCCcccccCch
Q 025403 107 GGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVACKSA 186 (253)
Q Consensus 107 ~g~~~paTlaEftl~~~~~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~d~~~~CP~~l~~~~~~~~~~v~C~Sa 186 (253)
.+++||+|||||||++.+++|||||||||||||||+|.|+++. +.|+.++|.+|||+.||.|||+++++ |.+||||||
T Consensus 80 ~~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~-~~C~~~~C~~din~~CP~~L~v~~~~-g~vv~C~Sa 157 (219)
T cd09218 80 AGGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGS-GGCRTAGCVADLNAVCPAELQVKNSG-GRVVACKSA 157 (219)
T ss_pred CCCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCC-CCCCCCcccCcccccCCHHHeeccCC-CcEeeecCH
Confidence 8889999999999987778999999999999999999998654 47999999999999999999998654 469999999
Q ss_pred hhhcCCCcccccCCCCCCCCCCCccchhHhhccCCCcccccCCCCCCceeecC-CCeEEEec
Q 025403 187 CEAFGDPRYCCSEAYATPDTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGS-ADYVIIFC 247 (253)
Q Consensus 187 C~~~~~~~~CC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~DD~ts~ftC~~-~~y~VtFC 247 (253)
|++|++|||||+|+|++|++|+|+.||++||++||+||+|||||++|+|+|++ ++|+||||
T Consensus 158 C~~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 158 CLAFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred HHhhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999997 89999998
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=2.2e-83 Score=564.53 Aligned_cols=216 Identities=54% Similarity=1.065 Sum_probs=205.6
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCCeeecCCCEEEEecCCCCc-eeeeeecccccCCCCcccccCCCCCCCccccCC
Q 025403 28 FKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWS-GRIWARTLCTHHQNQTFSCVTGDCGSQKLECAG 106 (253)
Q Consensus 28 ~tv~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~Ws-GriWaRtgCs~~~~g~~~C~TGdC~~g~~~C~~ 106 (253)
|||+|||+|||||||+++ |++++..+||+|++|++++|.+|++|+ |||||||+|++|+.|+++|+||||+ |+|+|++
T Consensus 1 fti~N~C~~tVWp~~~~~-g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCg-G~l~C~g 78 (218)
T smart00205 1 FEFVNNCPYTVWAAALPS-GKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCG-GVLQCNG 78 (218)
T ss_pred CEEEcCCCCceeceecCC-CCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCC-CeeecCC
Confidence 799999999999999998 888888899999999999999999996 9999999999999999999999999 9999998
Q ss_pred CCCCCCcceEEEEecCCCCcccccccccCcccCcceeeecCCCCCCCCCccccccccccCCccccccccCCCcccccCch
Q 025403 107 GGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVACKSA 186 (253)
Q Consensus 107 ~g~~~paTlaEftl~~~~~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~d~~~~CP~~l~~~~~~~~~~v~C~Sa 186 (253)
.+++||+|||||||++.+++|||||||||||||||+|.|+++. +.|+.++|.+|||..||.|||++.+ |.|||||||
T Consensus 79 ~gg~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~-~~C~~~~C~~d~~~~CP~~L~v~~~--g~vv~C~Sa 155 (218)
T smart00205 79 WGGRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGS-GDCKGAGCTADLNAQCPAELQVPGG--GSVVACNSA 155 (218)
T ss_pred CCCCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCC-CCcCCCcCCCcccccCCHHHccccC--CcccccccH
Confidence 8889999999999997778999999999999999999998654 3799999999999999999999843 469999999
Q ss_pred hhhcCCCcccccCCCCCCCCCCCccchhHhhccCCCcccccCCCCCCceeecC-CCeEEEecC
Q 025403 187 CEAFGDPRYCCSEAYATPDTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGS-ADYVIIFCP 248 (253)
Q Consensus 187 C~~~~~~~~CC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~DD~ts~ftC~~-~~y~VtFCP 248 (253)
|++|++|||||+|+|++|++|+|+.||++||++||+||+||+||.+++|+|++ ++|+|+|||
T Consensus 156 C~~f~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 156 CTVFGTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred hhccCCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999998 899999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=7.9e-83 Score=562.91 Aligned_cols=214 Identities=43% Similarity=0.900 Sum_probs=198.7
Q ss_pred EEEEeCCCCcccceeecCCCCC---CCCCCCeeecCCCEEEEecCCCCc-eeeeeecccccC-CCCcccccCCCCCCCcc
Q 025403 28 FKMVNKCRRTVWPGLLSGANSP---PLPTTGFELKSGKSRTITIPKSWS-GRIWARTLCTHH-QNQTFSCVTGDCGSQKL 102 (253)
Q Consensus 28 ~tv~N~C~~tVw~~~~~~~g~~---~~~~~g~~L~~G~s~s~~vp~~Ws-GriWaRtgCs~~-~~g~~~C~TGdC~~g~~ 102 (253)
|||+|||+|||||||++++|++ ++..+||+|+||++++|.+|++|+ |||||||+|++| ..|+++|+||||+ |+|
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCg-g~l 79 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCG-GGL 79 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCC-cee
Confidence 7999999999999999999987 677899999999999999999997 999999999999 4699999999999 999
Q ss_pred ccCCCCCCCCcceEEEEecCCCCcccccccccCcccCcceeeecCCCCCCCCCccccccccccCCccccccccCCCcccc
Q 025403 103 ECAGGGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVA 182 (253)
Q Consensus 103 ~C~~~g~~~paTlaEftl~~~~~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~d~~~~CP~~l~~~~~~~~~~v~ 182 (253)
+|++ ++.||+|||||+|++. ++|||||||||||||||+|.|.. .|+.++|.+|||..||.|||++...+|++||
T Consensus 80 ~C~~-~g~pP~TlaEftL~~~-~~D~YdVSlVDGfNlP~~i~P~~----~C~~~~C~~dln~~CP~~L~v~~~~~g~~va 153 (229)
T cd09219 80 TCEN-SDQPPASLAEFTLIGG-KEDNYDISLVDGFNIPLNITNNI----TCPQPQCQVDLNVLCPALLRGPLDQKGVNLG 153 (229)
T ss_pred ecCC-CCCCCcceeeEEecCC-CCceeEEEEecccccceEeccCC----CCCCCcccCCCcccCCHHHccccCCCCccce
Confidence 9995 5689999999999976 78999999999999999999931 6999999999999999999998533356999
Q ss_pred cCchhhh-cCC--CcccccCCCCCCCCCCC--ccchhHhhccCCCcccccCCCCC--CceeecC---CCeEEEecC
Q 025403 183 CKSACEA-FGD--PRYCCSEAYATPDTCFP--SVYSLFFKHVCPRAYSYAYDDKT--STYTCGS---ADYVIIFCP 248 (253)
Q Consensus 183 C~SaC~~-~~~--~~~CC~g~~~~p~~C~p--t~ys~~fK~~CP~AYsya~DD~t--s~ftC~~---~~y~VtFCP 248 (253)
|||||++ |++ |||||+|+|++|++|+| ++||++||++||+||||||||++ |+|||++ ++|+|||||
T Consensus 154 C~SaC~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 154 CISPCNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred ecCHhhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 9999999 655 99999999999999999 88999999999999999999999 6799996 899999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=1.2e-79 Score=540.39 Aligned_cols=212 Identities=59% Similarity=1.179 Sum_probs=177.0
Q ss_pred eCCCCcccceeecCCCCCCCCCCCeeecCCCEEEEecCCCCceeeeeecccccCCCCcccccCCCCCCCccccCCCCCCC
Q 025403 32 NKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWARTLCTHHQNQTFSCVTGDCGSQKLECAGGGAAP 111 (253)
Q Consensus 32 N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriWaRtgCs~~~~g~~~C~TGdC~~g~~~C~~~g~~~ 111 (253)
|||+||||||++++++++++..+||+|++|+++++.+|++|+|||||||+|++++.|+++|+||||+ |+++|++.++.+
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCg-g~~~C~~~~~~~ 79 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCG-GRLECNGAGGSP 79 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-ST-TBSSSSS----S
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCC-cccccccccCcc
Confidence 9999999999999999888788999999999999999999999999999999999999999999999 999999877899
Q ss_pred CcceEEEEecCCCCcccccccccCcccCcceeeecCCCCCCCCCccccccccccCCccccccccCCCcccccCchhhhcC
Q 025403 112 PATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVACKSACEAFG 191 (253)
Q Consensus 112 paTlaEftl~~~~~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~d~~~~CP~~l~~~~~~~~~~v~C~SaC~~~~ 191 (253)
|+|||||+|++.+++|||||||||||||||+|+|.+ +..|+.++|.+||+..||.|||++..++ +|+|+|+|.+|+
T Consensus 80 P~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~--~~~C~~~~C~~di~~~CP~~l~v~~~~~--vv~C~SaC~~~~ 155 (213)
T PF00314_consen 80 PATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSG--GSNCRSPGCPADINSWCPSELQVKNSDG--VVGCKSACDAFN 155 (213)
T ss_dssp S--EEEEEEEETTTEEEEEEESTT-BSS-EEEEESS--SSSSSSEEE-S-HHHHE-CCCEEETTSS--TTEE--HHHHH-
T ss_pred cceeEEEEeccCCCcceEEEEeeeeecCChhhccCC--CCccccccCccccccccchhheeeccCc--eeeecccceecc
Confidence 999999999866789999999999999999999995 3589999999999999999999977653 999999999999
Q ss_pred CCcccccCCCCCCCCCCCccchhHhhccCCCcccccCCCCCCceeecC-CCeEEEecC
Q 025403 192 DPRYCCSEAYATPDTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGS-ADYVIIFCP 248 (253)
Q Consensus 192 ~~~~CC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~DD~ts~ftC~~-~~y~VtFCP 248 (253)
+|||||+|+|++|++|++++|+++||++||+||+|||||.+|+|+|++ ++|+|||||
T Consensus 156 ~~~~CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 156 TDEYCCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp SHHHHTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred CCccccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 999999999999999999999999999999999999999999999997 899999998
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=1e-59 Score=395.84 Aligned_cols=155 Identities=51% Similarity=1.087 Sum_probs=141.8
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCCeeecCCCEEEEecCCCCceeeeeecccccCC-CCcccccCCCCCCCccccCC
Q 025403 28 FKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWARTLCTHHQ-NQTFSCVTGDCGSQKLECAG 106 (253)
Q Consensus 28 ~tv~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriWaRtgCs~~~-~g~~~C~TGdC~~g~~~C~~ 106 (253)
|||+|||+|||||||++++|++ +..+||+|+||+++++.+|++|+|||||||+|++|+ .|++.|+||||+ |+++|++
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~-~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCg-g~l~C~g 78 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKG-PYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCN-GGLNCQG 78 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCC-CCCCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCC-ceeecCC
Confidence 7999999999999999999986 678999999999999999999999999999999998 799999999999 9999998
Q ss_pred CCCCCCcceEEEEecCCCCcccccccccCcccCcceeeecCCCCCCCCCccccccccccCCccccccccCCCcccccCch
Q 025403 107 GGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVACKSA 186 (253)
Q Consensus 107 ~g~~~paTlaEftl~~~~~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~d~~~~CP~~l~~~~~~~~~~v~C~Sa 186 (253)
++.||+|||||||++.+++|||||||||||||||+|.|++ +.|+.++|.+
T Consensus 79 -~g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~---~~C~~~~C~~-------------------------- 128 (157)
T cd09215 79 -TGGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQP---GECPTPICAA-------------------------- 128 (157)
T ss_pred -CCCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCC---CCCCCCcccc--------------------------
Confidence 5579999999999977788999999999999999999974 1454444431
Q ss_pred hhhcCCCcccccCCCCCCCCCCCccchhHhhccCCCcccccCCCCCCceeecC-CCeEEEec
Q 025403 187 CEAFGDPRYCCSEAYATPDTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGS-ADYVIIFC 247 (253)
Q Consensus 187 C~~~~~~~~CC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~DD~ts~ftC~~-~~y~VtFC 247 (253)
||+||||||||++|+|+|++ ++|+|+||
T Consensus 129 ---------------------------------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 ---------------------------------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ---------------------------------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 99999999999999999998 99999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=8.9e-52 Score=346.07 Aligned_cols=149 Identities=52% Similarity=1.015 Sum_probs=132.4
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCCeeecCCCEEEEecCCC-CceeeeeecccccCCCCcccccCCCCCCCccccCC
Q 025403 28 FKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKS-WSGRIWARTLCTHHQNQTFSCVTGDCGSQKLECAG 106 (253)
Q Consensus 28 ~tv~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~-WsGriWaRtgCs~~~~g~~~C~TGdC~~g~~~C~~ 106 (253)
|+|+|||+||||||+++. .+||+|+||+++++++|++ |+|||||||+|++|+.|+++|+||||+ |+++|++
T Consensus 1 ~~~~N~C~~tvWp~~~~~-------~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCg-g~l~C~~ 72 (151)
T cd09217 1 FTITNNCGYTVWPAATPV-------GGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCG-GVLSCTG 72 (151)
T ss_pred CEEEeCCCCcccceEecC-------CCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCC-CeeecCC
Confidence 789999999999999862 3799999999999999997 999999999999999999999999999 9999995
Q ss_pred CCCCCCcceEEEEecCCCCcccccccccCcccCcceeeecCCCCCCCCCccccccccccCCccccccccCCCcccccCch
Q 025403 107 GGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVACKSA 186 (253)
Q Consensus 107 ~g~~~paTlaEftl~~~~~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~d~~~~CP~~l~~~~~~~~~~v~C~Sa 186 (253)
++.||+|++||+|+. +++||||||+||||||||+|+|++. .|+.++|..
T Consensus 73 -~g~pp~Tl~E~tl~~-~~~d~YdISlVdG~NlP~~i~P~~~---~C~~~~C~~-------------------------- 121 (151)
T cd09217 73 -SGKPPATLAEYTLNQ-SGQDFYDISLVDGFNVPMDFSPTGG---GCHAIPCAA-------------------------- 121 (151)
T ss_pred -CCCCCceeEEEEecC-CCCccEEEEeecccccceEEecCCC---CCCCCcCCC--------------------------
Confidence 568999999999986 5789999999999999999999732 354433321
Q ss_pred hhhcCCCcccccCCCCCCCCCCCccchhHhhccCCCcccccCCCCCCceeecC-CCeEEEecC
Q 025403 187 CEAFGDPRYCCSEAYATPDTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGS-ADYVIIFCP 248 (253)
Q Consensus 187 C~~~~~~~~CC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~DD~ts~ftC~~-~~y~VtFCP 248 (253)
. ||+||+|++|| .++|+|+. ++|+|+|||
T Consensus 122 -----------------------d---------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 -----------------------N---------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred -----------------------C---------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 0 99999999995 79999998 899999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=1.5e-50 Score=339.23 Aligned_cols=152 Identities=45% Similarity=0.746 Sum_probs=136.0
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCCeeecCCCEEEEecCCCCceeeeeecccccCCCCcccccCCCCCCCccccCCC
Q 025403 28 FKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWARTLCTHHQNQTFSCVTGDCGSQKLECAGG 107 (253)
Q Consensus 28 ~tv~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriWaRtgCs~~~~g~~~C~TGdC~~g~~~C~~~ 107 (253)
|||+|||+|||||+|+++++++.+..+||+|+||++++|++|+.|+||||+||+|+++..|++.|+||||+ + +.|.+.
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcg-g-~~c~g~ 78 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPG-V-VNPTDP 78 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCC-C-cccCCC
Confidence 68999999999999999988887777899999999999999999999999999999998899999999998 6 788877
Q ss_pred CCCCCcceEEEEecCCCCcccccccccCcccCcceeeecCCCCCCCCCccccccccccCCccccccccCCCcccccCchh
Q 025403 108 GAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVACKSAC 187 (253)
Q Consensus 108 g~~~paTlaEftl~~~~~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~d~~~~CP~~l~~~~~~~~~~v~C~SaC 187 (253)
++.||+|||||||++.+++||||||+||||||||+|+|+++.+ .|+
T Consensus 79 ~g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~g-------------------------------~C~--- 124 (153)
T cd08961 79 NRDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGDG-------------------------------TCL--- 124 (153)
T ss_pred CCCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCCC-------------------------------Ccc---
Confidence 7889999999999876688999999999999999999964321 132
Q ss_pred hhcCCCcccccCCCCCCCCCCCccchhHhhccCCCcccccCCCCCCceeecC-CCeEEEe
Q 025403 188 EAFGDPRYCCSEAYATPDTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGS-ADYVIIF 246 (253)
Q Consensus 188 ~~~~~~~~CC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~DD~ts~ftC~~-~~y~VtF 246 (253)
+.. |||+|||||+.++|+|++ .+|.|+|
T Consensus 125 ---------------------~~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 125 ---------------------STG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred ---------------------ccc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 111 999999999899999988 8999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=98.21 E-value=4.5e-05 Score=64.44 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=28.9
Q ss_pred CCcceEEEEecCCCCcccccccccCccc---CcceeeecC
Q 025403 111 PPATLAEFTLNGAGGLDFYDVSLVDGYN---LPMLVVPKG 147 (253)
Q Consensus 111 ~paTlaEftl~~~~~~d~YdVSlVdG~N---lP~~i~p~~ 147 (253)
.|.|..||+|...+.+-|||+|.|.|.. -+|.|.|.+
T Consensus 72 ~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~ 111 (155)
T PF04681_consen 72 SPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSD 111 (155)
T ss_pred CceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCC
Confidence 5889999999875568999999999983 345666643
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=96.12 E-value=0.035 Score=52.80 Aligned_cols=111 Identities=23% Similarity=0.373 Sum_probs=66.3
Q ss_pred EEEEEeCCCC--cccceeecCC---CC------------CCCC----C----CCeee-cCCCEEEEecCCCCceeeeeec
Q 025403 27 SFKMVNKCRR--TVWPGLLSGA---NS------------PPLP----T----TGFEL-KSGKSRTITIPKSWSGRIWART 80 (253)
Q Consensus 27 t~tv~N~C~~--tVw~~~~~~~---g~------------~~~~----~----~g~~L-~~G~s~s~~vp~~WsGriWaRt 80 (253)
.|+|+||=+. +||..|++.. ++ +... . -...| ++|++.++.+|. ++||||=..
T Consensus 2 pl~l~Nns~~~~~vy~yi~G~~~~~~~~v~~~adG~~~~p~~~~~~~~~~~d~aipl~~~G~~~tvtiP~-~sgRiyfS~ 80 (353)
T cd09216 2 PLTITNNSGRNNQIYLYVVGTDLQTGRQGWVDADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTVLPPR-MSGRIYFSL 80 (353)
T ss_pred cEEEEeCCCCCCcEEEEEEeeeCCCCcEEEEeCCCCEecCCcccCCCCCccceeeECCCCCCceEEcccc-cCcEEEEEc
Confidence 4889999987 8999887642 21 0000 0 11234 467888999998 999999643
Q ss_pred ccccCCCCcccccCCCCCCCccccCCCCCCCC-----cceEEEEecCCCCcccccccccCcccCcceeeecC
Q 025403 81 LCTHHQNQTFSCVTGDCGSQKLECAGGGAAPP-----ATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKG 147 (253)
Q Consensus 81 gCs~~~~g~~~C~TGdC~~g~~~C~~~g~~~p-----aTlaEftl~~~~~~d~YdVSlVdG~NlP~~i~p~~ 147 (253)
+= .=.|.=.. +.+-.+-....++-| -..+|||++. ..-|=++|.||-|.+||.|+-.+
T Consensus 81 g~----~L~F~~~~---~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~--~gl~~N~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 81 GS----KLRFKVVT---NPALVQPAGWNPSDPNFNILHDWVEFTFND--AGLFCNTTQVDMFSAPLAIGLRG 143 (353)
T ss_pred CC----eeEEEecC---CCcccCCCCCCCCCCCccceEEEEEEEecC--CceEecccceeeeccceEEEEec
Confidence 21 01122111 112222211111111 1348999985 34589999999999999998764
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=95.34 E-value=0.13 Score=49.16 Aligned_cols=113 Identities=29% Similarity=0.403 Sum_probs=66.7
Q ss_pred EEEEEeCCCC-cccceeecCC---CC------------CC---------CC-CCCeee-cCCCEEEEecCCCCceeeeee
Q 025403 27 SFKMVNKCRR-TVWPGLLSGA---NS------------PP---------LP-TTGFEL-KSGKSRTITIPKSWSGRIWAR 79 (253)
Q Consensus 27 t~tv~N~C~~-tVw~~~~~~~---g~------------~~---------~~-~~g~~L-~~G~s~s~~vp~~WsGriWaR 79 (253)
.|+|+|+=+. +|+..|++.. +. ++ +. .-...| .+|++.++++|.-++||||=.
T Consensus 2 ~l~l~N~~~~~~vyaYitG~~~~~~~~~~l~adG~~~~~~~~~~~~~~~~~~d~aIpl~~~G~~~titiP~i~sgRIyfS 81 (369)
T cd09220 2 PLALVNNSGSGTVYAYITGLDLNNNRVVFLRADGSTYYPPSSPSAVPSPLGADCAIPLGAPGSTTTVTIPILAGGRIWFS 81 (369)
T ss_pred cEEEEecCCCCcEEEEEeceecCCCcEEEEeCCCcEeCCCCCccccCCCCCcceeeecCCCCCceeEEcccccceEEEEE
Confidence 4788888875 7888876641 21 00 00 011234 258889999999899999964
Q ss_pred cccccCCCCcccccCCCCCCCccccCCCCCC-CC----cceEEEEecCCCCcccccccccCcccCcceeeecC
Q 025403 80 TLCTHHQNQTFSCVTGDCGSQKLECAGGGAA-PP----ATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKG 147 (253)
Q Consensus 80 tgCs~~~~g~~~C~TGdC~~g~~~C~~~g~~-~p----aTlaEftl~~~~~~d~YdVSlVdG~NlP~~i~p~~ 147 (253)
.+=. -.|. ...+ +.+.++-.-...+ |- -..+|||++. ..-|=++|.||-|.+||.|+-.+
T Consensus 82 ~g~~----L~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~--~~l~~N~S~VD~~~~P~~l~l~~ 146 (369)
T cd09220 82 VDDK----LTFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS--GQLYANISYVDFVGLPLGLSLTT 146 (369)
T ss_pred cCCe----EEEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC--CceEecccceeeeccCeEEEEEc
Confidence 3211 1121 1111 2122222211111 11 1358999986 45689999999999999998654
No 11
>PRK02710 plastocyanin; Provisional
Probab=78.32 E-value=7.4 Score=30.99 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=10.5
Q ss_pred CCeeecCCCEEEEec
Q 025403 54 TGFELKSGKSRTITI 68 (253)
Q Consensus 54 ~g~~L~~G~s~s~~v 68 (253)
.-.++++|++.++..
T Consensus 47 ~~i~v~~Gd~V~~~N 61 (119)
T PRK02710 47 STLTIKAGDTVKWVN 61 (119)
T ss_pred CEEEEcCCCEEEEEE
Confidence 347888888877643
No 12
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=75.46 E-value=2.1 Score=33.37 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=11.9
Q ss_pred CcchhhHHHHHHHHHHHHhhccccceEE
Q 025403 1 MDRRRLLSATFLSLLALCFISETEPASF 28 (253)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~a~a~t~ 28 (253)
|-+|.++++.|++.++|+.++.++++..
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 6566555433332222233344444444
No 13
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=68.99 E-value=4 Score=38.47 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=27.4
Q ss_pred eEEEEecCCCCcccccccccCcccCcceeeecCC
Q 025403 115 LAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGG 148 (253)
Q Consensus 115 laEftl~~~~~~d~YdVSlVdG~NlP~~i~p~~g 148 (253)
.+|||++. ..-|-++|.||-|.|||.|+-.+.
T Consensus 125 f~EFT~n~--~~l~~N~T~VD~~~lPl~l~l~~~ 156 (319)
T cd09214 125 FIEFTYNA--TGLWGNTTRVDAFGIPLTLRLIGK 156 (319)
T ss_pred EEEEEecC--CceEecccceeeeccCeEEEEEcC
Confidence 48999985 567999999999999999987653
No 14
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=63.68 E-value=9.2 Score=24.77 Aligned_cols=20 Identities=30% Similarity=0.487 Sum_probs=11.4
Q ss_pred HHHHhhccccceEEEEEeCC
Q 025403 15 LALCFISETEPASFKMVNKC 34 (253)
Q Consensus 15 ~~~~~~~~a~a~t~tv~N~C 34 (253)
|+++.+..+.+-+++|-=+|
T Consensus 13 Lal~~a~~~~pG~ViING~C 32 (36)
T PF08194_consen 13 LALAAAVPATPGNVIINGKC 32 (36)
T ss_pred HHHHhcccCCCCeEEECcee
Confidence 44444444557777776555
No 15
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=56.99 E-value=18 Score=29.96 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=38.1
Q ss_pred cceEEEEEeCCCCcccceeecCCCCCCCCCCCeeecCCCEEEEecCCCCceeeeeec
Q 025403 24 EPASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWART 80 (253)
Q Consensus 24 ~a~t~tv~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriWaRt 80 (253)
....++|+|+.+.+|-+-+.-..|.+... ..|+||+.+.++ .+.|..|--.
T Consensus 7 ~~~~v~F~N~t~~~v~~~Wid~~G~~~~Y---~~l~pg~~~~~~---Ty~~H~W~~r 57 (141)
T cd05468 7 VPSTVRFVNRTDRPVELYWIDYDGKPVSY---GTLQPGETVRQN---TYVGHPWLFR 57 (141)
T ss_pred ceEEEEEEeCCCCeEEEEEECCCCCEEEe---eeeCCCCEEeec---ccCCCcEEEE
Confidence 45789999999999999998777765432 379999987664 3556777543
No 16
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=56.73 E-value=4.9 Score=37.90 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=19.6
Q ss_pred ccchhHhhccCC--CcccccCCCC
Q 025403 210 SVYSLFFKHVCP--RAYSYAYDDK 231 (253)
Q Consensus 210 t~ys~~fK~~CP--~AYsya~DD~ 231 (253)
+.|++++++.-. .||.|||||-
T Consensus 276 N~Yar~vH~~~idg~aYaF~YDDV 299 (319)
T cd09214 276 NYYAQFWHAHSINGLAYGFPYDDV 299 (319)
T ss_pred hHHHHHHHHhccCCCeeecccccc
Confidence 469999999997 8999999985
No 17
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=53.62 E-value=6 Score=38.07 Aligned_cols=22 Identities=36% Similarity=0.718 Sum_probs=19.9
Q ss_pred ccchhHhhccCC--CcccccCCCC
Q 025403 210 SVYSLFFKHVCP--RAYSYAYDDK 231 (253)
Q Consensus 210 t~ys~~fK~~CP--~AYsya~DD~ 231 (253)
+.|++++++.-+ .+|.|||||-
T Consensus 321 NhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 321 NHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred hHHHHHHHHhccCCCeeccccccc
Confidence 569999999988 7899999996
No 18
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=51.92 E-value=13 Score=31.65 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=11.2
Q ss_pred CcchhhHHHHHHHHHH
Q 025403 1 MDRRRLLSATFLSLLA 16 (253)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (253)
||++++..+.|++||.
T Consensus 1 m~ms~~~~v~l~alls 16 (158)
T KOG4063|consen 1 MMMSFLKTVILLALLS 16 (158)
T ss_pred CchHHHHHHHHHHHHH
Confidence 8888888766655443
No 19
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=51.05 E-value=18 Score=25.35 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=22.5
Q ss_pred cchhhHHHHHHHHHHHHhhccccceEEEEEeCCCCcc
Q 025403 2 DRRRLLSATFLSLLALCFISETEPASFKMVNKCRRTV 38 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~a~a~t~tv~N~C~~tV 38 (253)
|.+++.+.++.++| ..+++-.++..+-.|||+|+-
T Consensus 1 M~~~~K~~~~a~vl--~~Lt~CTG~v~Nk~knCsYDY 35 (56)
T PF13978_consen 1 MKKFIKIAVVAAVL--ATLTACTGHVENKEKNCSYDY 35 (56)
T ss_pred ChhHHHHHHHHHHH--HHHhhccceeeccCCCCccee
Confidence 34444444444423 345677788899999999873
No 20
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=47.13 E-value=8.8 Score=36.76 Aligned_cols=22 Identities=27% Similarity=0.606 Sum_probs=19.3
Q ss_pred ccchhHhhccCC--CcccccCCCC
Q 025403 210 SVYSLFFKHVCP--RAYSYAYDDK 231 (253)
Q Consensus 210 t~ys~~fK~~CP--~AYsya~DD~ 231 (253)
+.|++++++.=. .||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 469999999987 6899999995
No 21
>PHA03094 dUTPase; Provisional
Probab=45.24 E-value=23 Score=29.31 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.6
Q ss_pred CeeecCCCEEE------EecCCCCceeeeeeccc
Q 025403 55 GFELKSGKSRT------ITIPKSWSGRIWARTLC 82 (253)
Q Consensus 55 g~~L~~G~s~s------~~vp~~WsGriWaRtgC 82 (253)
.+.|.||+... +.+|.+|.|.|++|.+-
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsl 68 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFCYGRIAPRSGL 68 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCEEEEEEccccc
Confidence 57889999876 68999999999999654
No 22
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=43.85 E-value=21 Score=30.36 Aligned_cols=51 Identities=27% Similarity=0.332 Sum_probs=30.3
Q ss_pred cccceEEEEEeCCCCcccceeecCCCCCCCCCCCeeecCCCEEEEecCCCCceeeee
Q 025403 22 ETEPASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWA 78 (253)
Q Consensus 22 ~a~a~t~tv~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriWa 78 (253)
+-....++|.|+++.+|-+-+..-.|.+... ..|+||+.+.++. +.|..|=
T Consensus 11 S~~~s~V~F~N~s~r~V~v~Wldy~G~~~~Y---~~L~Pg~~~~~~T---Y~tHpW~ 61 (156)
T PF01847_consen 11 SREPSFVRFVNRSPRTVDVYWLDYDGKPVPY---GTLKPGQGRRQNT---YVTHPWV 61 (156)
T ss_dssp --SEEEEEEEE-SSS-EEEEEE-TTS-EEE------B-TTEEEEEEE---ETT-EEE
T ss_pred CCCceEEEEEECCCCEEEEEEEcCCCcEeec---cccCCCCeEEccc---ccCCcEE
Confidence 3446789999999999988887766665432 3699999988763 4456664
No 23
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=41.90 E-value=82 Score=28.01 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=25.2
Q ss_pred ccceEEEEEeCCCCcccceee--cCCCC--CCC--CCCCeeecCCCEEEEec
Q 025403 23 TEPASFKMVNKCRRTVWPGLL--SGANS--PPL--PTTGFELKSGKSRTITI 68 (253)
Q Consensus 23 a~a~t~tv~N~C~~tVw~~~~--~~~g~--~~~--~~~g~~L~~G~s~s~~v 68 (253)
..+.+|+|.|+=..++-.-.. ..... .++ .+-=++|+||+...+.+
T Consensus 39 ~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRi 90 (230)
T PRK09918 39 DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRF 90 (230)
T ss_pred CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEE
Confidence 346799999988765322211 11111 111 12247899998887743
No 24
>COG5510 Predicted small secreted protein [Function unknown]
Probab=39.69 E-value=31 Score=23.28 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=6.1
Q ss_pred CcchhhHHHHHH
Q 025403 1 MDRRRLLSATFL 12 (253)
Q Consensus 1 m~~~~~~~~~~~ 12 (253)
||.++..+++++
T Consensus 1 mmk~t~l~i~~v 12 (44)
T COG5510 1 MMKKTILLIALV 12 (44)
T ss_pred CchHHHHHHHHH
Confidence 666654443333
No 25
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=38.55 E-value=1.1e+02 Score=27.36 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=24.8
Q ss_pred ccceEEEEEeCCCCcc----cceeecCCCC-CCC--CCCCeeecCCCEEEEec
Q 025403 23 TEPASFKMVNKCRRTV----WPGLLSGANS-PPL--PTTGFELKSGKSRTITI 68 (253)
Q Consensus 23 a~a~t~tv~N~C~~tV----w~~~~~~~g~-~~~--~~~g~~L~~G~s~s~~v 68 (253)
....+|+|.|+=..++ |.--....+. .++ .+-=|+|+||+...+.+
T Consensus 37 ~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI 89 (229)
T PRK15211 37 RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRI 89 (229)
T ss_pred CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEE
Confidence 3468899999876642 2211111111 111 12247899998777753
No 26
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=38.41 E-value=31 Score=23.74 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=4.9
Q ss_pred CcchhhHHH
Q 025403 1 MDRRRLLSA 9 (253)
Q Consensus 1 m~~~~~~~~ 9 (253)
||.|.+.++
T Consensus 1 MmKk~i~~i 9 (48)
T PRK10081 1 MVKKTIAAI 9 (48)
T ss_pred ChHHHHHHH
Confidence 665555553
No 27
>PRK10002 outer membrane protein F; Provisional
Probab=37.83 E-value=37 Score=32.02 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=20.2
Q ss_pred CcchhhHHHHHHHHHHHHhhccccceEEEEEeCCCCcccc
Q 025403 1 MDRRRLLSATFLSLLALCFISETEPASFKMVNKCRRTVWP 40 (253)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~a~a~t~tv~N~C~~tVw~ 40 (253)
||.|.++.+++.+ ++++.+|.| .+|+|+=..+|.+
T Consensus 1 ~mkktl~a~a~~a---~~~a~~a~A--~~vy~~dg~sVtL 35 (362)
T PRK10002 1 MMKRNILAVIVPA---LLVAGTANA--AEIYNKDGNKVDL 35 (362)
T ss_pred CccHhHHHHHHHH---HHHhcccce--eeEeecCCCEEEE
Confidence 7777666533332 223344444 6688877776665
No 28
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=32.75 E-value=50 Score=23.57 Aligned_cols=23 Identities=35% Similarity=0.757 Sum_probs=17.2
Q ss_pred eeecCCCEEEEecCCCC-----ceeeee
Q 025403 56 FELKSGKSRTITIPKSW-----SGRIWA 78 (253)
Q Consensus 56 ~~L~~G~s~s~~vp~~W-----sGriWa 78 (253)
|+|.||+..++....+. +|++|-
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 67888888888776653 488885
No 29
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=32.27 E-value=39 Score=24.83 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=10.0
Q ss_pred cchhhHHHHHHHHHHHHhhccc
Q 025403 2 DRRRLLSATFLSLLALCFISET 23 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~a 23 (253)
|-.+.+.+||.++|+-+++.-+
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqS 22 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQS 22 (71)
T ss_pred CCchhHHHHHHHHHHhhheeee
Confidence 3445555544443443444333
No 30
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.04 E-value=75 Score=25.33 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=29.7
Q ss_pred ceEEEEEeCCCCcccceeecCCCCCCCCCCCe-eecCCCEEEE
Q 025403 25 PASFKMVNKCRRTVWPGLLSGANSPPLPTTGF-ELKSGKSRTI 66 (253)
Q Consensus 25 a~t~tv~N~C~~tVw~~~~~~~g~~~~~~~g~-~L~~G~s~s~ 66 (253)
.+-|+|-|+-++.|+++|.-..+.. -...|| .|+||+-.++
T Consensus 3 ~a~~~vCN~T~~~v~vAigy~~~~~-W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 3 HAGLRVCNRTSSPVGVAIGYRDGGG-WVSEGWWRIDPGECATV 44 (115)
T ss_pred cCCcEEecCCCCeEEEEEEEEcCCC-cEEeeeEEeCCCceEEe
Confidence 4568999999999999996544332 223354 8899987766
No 31
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=29.11 E-value=1.8e+02 Score=25.94 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=25.0
Q ss_pred cceEEEEEeCCCCcccceeecC----CCC--CCC--CCCCeeecCCCEEEEec
Q 025403 24 EPASFKMVNKCRRTVWPGLLSG----ANS--PPL--PTTGFELKSGKSRTITI 68 (253)
Q Consensus 24 ~a~t~tv~N~C~~tVw~~~~~~----~g~--~~~--~~~g~~L~~G~s~s~~v 68 (253)
.+.+|+|.|+=....+. ++.+ .+. .++ .+-=|+|+||+..++.+
T Consensus 41 ~~~si~l~N~~~~~~~L-vQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRI 92 (229)
T PRK15195 41 KQTSLAIRNSHTNERYL-VNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRI 92 (229)
T ss_pred ceEEEEEEeCCCCccEE-EEEEecCCCCCccCCEEEcCCeEEECCCCceEEEE
Confidence 45789999998665333 2221 111 111 12247899998877753
No 32
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=27.35 E-value=41 Score=27.61 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=14.0
Q ss_pred ccccCCCCCCCCcceEEEEecCCCCccccccccc
Q 025403 101 KLECAGGGAAPPATLAEFTLNGAGGLDFYDVSLV 134 (253)
Q Consensus 101 ~~~C~~~g~~~paTlaEftl~~~~~~d~YdVSlV 134 (253)
.+.|.+.++. -.+..|++... .+.|++.+.
T Consensus 108 ~~~C~~~~~~-~~~~~~~~~~~---~~~~~~~~~ 137 (162)
T PF12276_consen 108 TMSCTGPGGK-ATGMGETTTDS---PTSYTGTMT 137 (162)
T ss_pred EEEeCCCCCc-eEEEEEEeeeC---CCeEEEEEE
Confidence 5677654321 23345554432 345654443
No 33
>PRK15241 putative fimbrial protein StaD; Provisional
Probab=26.26 E-value=86 Score=27.22 Aligned_cols=9 Identities=22% Similarity=0.102 Sum_probs=5.1
Q ss_pred ceEEEEecC
Q 025403 114 TLAEFTLNG 122 (253)
Q Consensus 114 TlaEftl~~ 122 (253)
+.+..+|.+
T Consensus 94 ~~v~~tf~g 102 (188)
T PRK15241 94 TKITTALGS 102 (188)
T ss_pred cEEEEEEcC
Confidence 446666643
No 34
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=25.60 E-value=92 Score=22.92 Aligned_cols=27 Identities=26% Similarity=0.618 Sum_probs=20.2
Q ss_pred CeeecCCCEEE------EecCCCCceeeeeecc
Q 025403 55 GFELKSGKSRT------ITIPKSWSGRIWARTL 81 (253)
Q Consensus 55 g~~L~~G~s~s------~~vp~~WsGriWaRtg 81 (253)
.+.|.|+++.- +.+|.++.|.|++|.+
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs 45 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGYVGLVFPRSS 45 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCch
Confidence 36777776543 4578899999999964
No 35
>PRK09733 putative fimbrial protein; Provisional
Probab=25.55 E-value=90 Score=26.31 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=6.3
Q ss_pred cceEEEEecC
Q 025403 113 ATLAEFTLNG 122 (253)
Q Consensus 113 aTlaEftl~~ 122 (253)
.+.+.++|.+
T Consensus 87 ~~~v~vtF~g 96 (181)
T PRK09733 87 YSKAKVTFTT 96 (181)
T ss_pred cceEEEEEEC
Confidence 4457777754
No 36
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=24.63 E-value=82 Score=24.19 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=19.8
Q ss_pred eeecCCCEEEEecCCCCceeeeeecc
Q 025403 56 FELKSGKSRTITIPKSWSGRIWARTL 81 (253)
Q Consensus 56 ~~L~~G~s~s~~vp~~WsGriWaRtg 81 (253)
..|++|+++++.+|.+|..-|+...|
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G 29 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLEG 29 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEES
T ss_pred EEECCCCEEEeecCCCCEEEEEEEEC
Confidence 57899999999999999998888753
No 37
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.30 E-value=2.9e+02 Score=24.68 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=26.1
Q ss_pred ccceEEEEEeCCCCcccceeecCCC----C--CCC--CCCCeeecCCCEEEEec
Q 025403 23 TEPASFKMVNKCRRTVWPGLLSGAN----S--PPL--PTTGFELKSGKSRTITI 68 (253)
Q Consensus 23 a~a~t~tv~N~C~~tVw~~~~~~~g----~--~~~--~~~g~~L~~G~s~s~~v 68 (253)
..+..|++.|.=.+++-+-..-..| . .++ .+-=|+|+||+..++.+
T Consensus 42 ~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi 95 (235)
T COG3121 42 DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRI 95 (235)
T ss_pred CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEE
Confidence 3567899999777765544322211 1 111 11237899998766643
No 38
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=23.30 E-value=26 Score=29.55 Aligned_cols=10 Identities=60% Similarity=0.962 Sum_probs=7.9
Q ss_pred ccCcccCcce
Q 025403 133 LVDGYNLPML 142 (253)
Q Consensus 133 lVdG~NlP~~ 142 (253)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899998655
No 39
>PRK03719 ecotin; Provisional
Probab=22.70 E-value=3.6e+02 Score=23.19 Aligned_cols=23 Identities=48% Similarity=0.654 Sum_probs=18.4
Q ss_pred ceEEEEecCCCCcccccccccCcc
Q 025403 114 TLAEFTLNGAGGLDFYDVSLVDGY 137 (253)
Q Consensus 114 TlaEftl~~~~~~d~YdVSlVdG~ 137 (253)
.|-|-++.++ |.+||-|+.|++-
T Consensus 85 ~leektl~Gw-GY~YY~v~~~~~~ 107 (166)
T PRK03719 85 ELEEKTLEGW-GYDYYVVDKVSGP 107 (166)
T ss_pred eeEEEeecCC-CceeEEEeccCCc
Confidence 5677788876 7899999988774
No 40
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=22.15 E-value=36 Score=28.09 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=13.2
Q ss_pred CcccccCCCCCCCccccC
Q 025403 88 QTFSCVTGDCGSQKLECA 105 (253)
Q Consensus 88 g~~~C~TGdC~~g~~~C~ 105 (253)
|.+.|+-|||| |.|.|.
T Consensus 83 g~Gp~~PGdCG-g~L~C~ 99 (127)
T PF00947_consen 83 GEGPAEPGDCG-GILRCK 99 (127)
T ss_dssp EE-SSSTT-TC-SEEEET
T ss_pred ecccCCCCCCC-ceeEeC
Confidence 45789999999 999997
No 41
>PLN02547 dUTP pyrophosphatase
Probab=21.98 E-value=1e+02 Score=25.95 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=21.5
Q ss_pred CeeecCCCEE------EEecCCCCceeeeeecc
Q 025403 55 GFELKSGKSR------TITIPKSWSGRIWARTL 81 (253)
Q Consensus 55 g~~L~~G~s~------s~~vp~~WsGriWaRtg 81 (253)
.+.|.|++.. .+.+|.+|.|.|++|.+
T Consensus 46 d~~i~P~~~~li~tgi~v~iP~g~~g~i~~RSg 78 (157)
T PLN02547 46 DTVVPARGKALVPTDLSIAIPEGTYARIAPRSG 78 (157)
T ss_pred CeEECCCCEEEEEeceEEEcCCCeEEEEEcccc
Confidence 4678888765 45689999999999964
No 42
>PTZ00102 disulphide isomerase; Provisional
Probab=21.06 E-value=74 Score=30.45 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=6.8
Q ss_pred CcchhhHHHHHHH
Q 025403 1 MDRRRLLSATFLS 13 (253)
Q Consensus 1 m~~~~~~~~~~~~ 13 (253)
||+++++++++++
T Consensus 1 ~~~~~~~~~~~~~ 13 (477)
T PTZ00102 1 IGFRSILSSLFLL 13 (477)
T ss_pred CcHHHHHHHHHHH
Confidence 7777555433333
No 43
>PF15240 Pro-rich: Proline-rich
Probab=21.05 E-value=69 Score=27.93 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhcccc
Q 025403 6 LLSATFLSLLALCFISETE 24 (253)
Q Consensus 6 ~~~~~~~~~~~~~~~~~a~ 24 (253)
|+++|.++||+|..|-.++
T Consensus 2 LlVLLSvALLALSSAQ~~d 20 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTD 20 (179)
T ss_pred hhHHHHHHHHHhhhccccc
No 44
>PRK09810 entericidin A; Provisional
Probab=21.01 E-value=82 Score=20.95 Aligned_cols=9 Identities=22% Similarity=0.338 Sum_probs=5.1
Q ss_pred CcchhhHHH
Q 025403 1 MDRRRLLSA 9 (253)
Q Consensus 1 m~~~~~~~~ 9 (253)
||.+.++++
T Consensus 1 mMkk~~~l~ 9 (41)
T PRK09810 1 MMKRLIVLV 9 (41)
T ss_pred ChHHHHHHH
Confidence 666655544
Done!