BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025405
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GYH7|NSE2_ARATH E3 SUMO-protein ligase MMS21 OS=Arabidopsis thaliana GN=MMS21 PE=1
SV=1
Length = 249
Score = 219 bits (559), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 151/228 (66%), Gaps = 2/228 (0%)
Query: 5 SASRHDAVTGRIRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKDNQSQMVKELEDAT 64
SAS D V GRI+NA+ L +DN++ + +IR+A+ M+K IAV LEK+NQ+ VK+LE++
Sbjct: 3 SASSSDGVAGRIQNASLVLVSDNSSTLADIRKAVAMMKNIAVQLEKENQTDKVKDLENSV 62
Query: 65 IQLMEAFGDCTHHSAAIQSVGNTYQPGTELTDFKKLLVDEDAKSRAASSSVPPNDPL-HK 123
+L++ DC H S AIQSV N YQP +LTDFKKLL DE K +A SSVP ND L +
Sbjct: 63 AELLDLHSDCNHRSTAIQSVANRYQPVEQLTDFKKLLDDEFTKLKATPSSVPQNDHLMRQ 122
Query: 124 FREAVWNVHHAGELMPGEEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRRYQILQIY 183
FREAVWNVHHAGE MPG++ EDIVMTSTQ +LN++CPLSGKP+TELA+PVR +Y
Sbjct: 123 FREAVWNVHHAGEPMPGDDDEDIVMTSTQCPLLNMTCPLSGKPVTELADPVRSMDCRHVY 182
Query: 184 PRFSFLPFCSLDCYFPRCNHFGCQLYFNWKKCVFKYHLKGHMLFMQVL 231
+ L + ++ C GC+ K + LK + M+ L
Sbjct: 183 EKSVILHYI-VNNPNANCPVAGCRGKLQNSKVICDAMLKFEIEEMRSL 229
>sp|P54389|YPIA_BACSU TPR repeat-containing protein YpiA OS=Bacillus subtilis (strain
168) GN=ypiA PE=4 SV=1
Length = 423
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 61 EDATI--QLMEAFGDCTHHSAAIQSVGNTYQPGTELTDFKKLL---VDEDAKSRAASSSV 115
ED I QL +GD + I + + Y TELT+F L +DE+ K+ A ++
Sbjct: 34 EDKAIAAQLYYEWGDVEKAISLISDLHDLYPNETELTNFYAELLIDIDEEEKALAVLETI 93
Query: 116 PPNDP 120
P DP
Sbjct: 94 PETDP 98
>sp|A5GWG3|ISPH_SYNR3 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
OS=Synechococcus sp. (strain RCC307) GN=ispH PE=3 SV=1
Length = 406
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
Query: 35 RRALGMIKEIAVDLEKDNQSQMVKELED---------ATIQLMEAFGDC 74
RR G +E+A LE+ QS++++ + + TI+L EAFG C
Sbjct: 18 RRGFGRAEEVAGSLEQAYQSELIQSIRENGYELREGRVTIRLAEAFGFC 66
>sp|P58674|ISPH_NOSS1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=ispH PE=3 SV=1
Length = 402
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 35 RRALGMIKEIAVDLEKDNQSQMVKELED---------ATIQLMEAFGDC 74
R+ G E+A L+ + QS +++E+ D TI+L +AFG C
Sbjct: 18 RKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFC 66
>sp|Q3M8X6|ISPH_ANAVT 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3
SV=1
Length = 402
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 35 RRALGMIKEIAVDLEKDNQSQMVKELED---------ATIQLMEAFGDC 74
R+ G E+A L+ + QS +++E+ D TI+L +AFG C
Sbjct: 18 RKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFC 66
>sp|B2IZV5|ISPH_NOSP7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH
PE=3 SV=1
Length = 402
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 35 RRALGMIKEIAVDLEKDNQSQMVKELED---------ATIQLMEAFGDC 74
R+ G E+A L+ + QS +++E+ D TI+L +AFG C
Sbjct: 18 RKGFGHQAEVATQLQSEYQSNLIQEIRDRNYILQRGDVTIRLAQAFGFC 66
>sp|P47460|HMW2_MYCGE Cytadherence high molecular weight protein 2 OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=hmw2 PE=3 SV=1
Length = 1805
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 33 EIRRALGMIKEIAVDLEKDNQ---------SQMVKELEDATIQLME-------AFGDCTH 76
E+++ G ++++ V+LE S+ +E E+ ++L+E
Sbjct: 1355 EVKKKEGELQKLLVELETRKTKLNNDFAKFSRQREEFENQRLKLLELQKTLQTQTNSNNF 1414
Query: 77 HSAAIQSVGNTYQPGTELTDFKKLLVDEDAKSRAASSSVPPNDPLHKFREAVWNVHHAGE 136
+ AIQ + N+Y+ G E +F+K D++ KSR + K R+ + +
Sbjct: 1415 KTKAIQEIENSYKRGMEELNFQKKEFDKN-KSRLY-------EYFRKMRDEIERKESQVK 1466
Query: 137 LMPGEEQEDIVMTSTQSNILNI 158
L+ E Q + Q+N LNI
Sbjct: 1467 LVLKETQRKANLLEAQANKLNI 1488
>sp|Q9RUP8|SYI_DEIRA Isoleucine--tRNA ligase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=ileS PE=3 SV=1
Length = 1078
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 45 AVDLEKDNQSQMVKELEDATIQLMEAFGDCTHHS--AAIQSVGNTYQPGTELTDFKKLLV 102
A+D K +Q+Q+++EL + +E D +S + VG Y G +L KK L
Sbjct: 878 ALDALKRSQTQIMEELNVKAVTFLEGDTDLVQYSLRPNLPVVGKQY--GKQLPVLKKALT 935
Query: 103 DEDAKSRAAS 112
+ DA++ A +
Sbjct: 936 EADARAVATA 945
>sp|Q54VX5|EXOC2_DICDI Exocyst complex component 2 OS=Dictyostelium discoideum GN=exoc2
PE=3 SV=1
Length = 1095
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 28 NTVIGEIR-RALG-MIKEIAVDLEK----DNQSQMVKELEDATIQLMEAFGDCTHHSA-- 79
N V G I R +G + I V+L K N+ ++ +E A + +E+FGDC HH A
Sbjct: 710 NQVDGMITTRLMGEFVNTIKVNLAKLSFLSNKPMLLPSVESALCEAIESFGDCLHHLAFN 769
Query: 80 --AIQS 83
+IQS
Sbjct: 770 NESIQS 775
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,884,901
Number of Sequences: 539616
Number of extensions: 3837009
Number of successful extensions: 9794
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9789
Number of HSP's gapped (non-prelim): 13
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)