Query 025406
Match_columns 253
No_of_seqs 165 out of 527
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:28:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 5.2E-54 1.1E-58 375.7 0.5 137 74-242 79-215 (215)
2 PF00564 PB1: PB1 domain; Int 97.3 0.00073 1.6E-08 50.0 5.9 67 131-226 4-71 (84)
3 smart00666 PB1 PB1 domain. Pho 97.1 0.0033 7.2E-08 46.5 7.5 65 131-225 4-69 (81)
4 cd06398 PB1_Joka2 The PB1 doma 97.0 0.0029 6.3E-08 50.0 7.1 68 130-226 2-72 (91)
5 cd06407 PB1_NLP A PB1 domain i 97.0 0.0034 7.5E-08 48.5 7.0 55 131-214 3-57 (82)
6 cd05992 PB1 The PB1 domain is 96.7 0.0083 1.8E-07 44.1 7.1 66 131-226 3-70 (81)
7 cd06396 PB1_NBR1 The PB1 domai 96.5 0.011 2.3E-07 46.4 6.6 53 131-213 3-55 (81)
8 cd06401 PB1_TFG The PB1 domain 96.3 0.029 6.4E-07 44.0 8.1 72 131-229 3-78 (81)
9 cd06409 PB1_MUG70 The MUG70 pr 95.1 0.05 1.1E-06 42.9 5.2 50 139-213 8-59 (86)
10 cd06403 PB1_Par6 The PB1 domai 95.0 0.077 1.7E-06 41.7 5.9 72 131-230 3-76 (80)
11 cd06404 PB1_aPKC PB1 domain is 95.0 0.085 1.8E-06 41.7 6.2 56 131-215 3-58 (83)
12 cd06402 PB1_p62 The PB1 domain 94.7 0.11 2.4E-06 41.0 6.3 59 130-215 2-65 (87)
13 cd06397 PB1_UP1 Uncharacterize 93.9 0.22 4.7E-06 39.3 6.2 66 131-226 3-69 (82)
14 cd06408 PB1_NoxR The PB1 domai 86.9 2.4 5.2E-05 33.6 6.2 64 130-225 4-68 (86)
15 cd06399 PB1_P40 The PB1 domain 68.5 9.1 0.0002 30.9 4.2 37 144-210 22-58 (92)
16 PF10411 DsbC_N: Disulfide bon 46.5 17 0.00036 26.0 2.1 17 199-215 34-50 (57)
17 cd06395 PB1_Map2k5 PB1 domain 39.4 52 0.0011 26.5 4.0 49 136-213 9-57 (91)
18 KOG4540 Putative lipase essent 36.8 22 0.00048 34.8 1.9 49 203-252 149-214 (425)
19 COG5153 CVT17 Putative lipase 36.8 22 0.00048 34.8 1.9 49 203-252 149-214 (425)
20 PF14688 DUF4461: Domain of un 22.3 56 0.0012 31.1 1.9 28 198-225 82-117 (313)
21 PF02013 CBM_10: Cellulose or 20.8 28 0.00062 23.5 -0.3 12 199-210 16-27 (36)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=5.2e-54 Score=375.67 Aligned_cols=137 Identities=53% Similarity=0.896 Sum_probs=6.0
Q ss_pred CCCCCCCccccCCcchhhcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEecCcccceeecCCCCCChH
Q 025406 74 FPTALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYE 153 (253)
Q Consensus 74 ~~~a~aqVVGWPPVRSfRKN~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~fVKV~MDGvpIgRKVDL~~y~sY~ 153 (253)
.|.+++|+|||||||+||||++... .....++||||+|||+||||||||++|+||+
T Consensus 79 ~p~~~~~~vgwpp~~s~r~n~~~~~------------------------~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~ 134 (215)
T PF02309_consen 79 PPASKAQVVGWPPVRSFRKNSLSEK------------------------QSSSSRSYVKVNMDGVPIGRKVDLSAYSSYE 134 (215)
T ss_dssp -------BTTBS----S---------------------------------------------------------------
T ss_pred CCcccccccCCCccccccccccccc------------------------ccccCCceeEEEecCcccceecCHHHhhCHH
Confidence 3456789999999999999987621 0122378999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeEEcCCcChhhHhhcceEeEEecCc
Q 025406 154 KLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSS 233 (253)
Q Consensus 154 eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwMLVGDVPWemFv~svKRLrImk~S 233 (253)
+|+.+|++||.+|.+.++++ . ..++..+.++++++ +|+|||||+||||||||||||+|||++|||||||+.+
T Consensus 135 ~L~~~L~~MF~~~~i~~~~~-~------~~~~~~~~~~~~~~-~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~ 206 (215)
T PF02309_consen 135 ELSSALEKMFSCFSIEQCGS-H------GLNESGLLDLLNGS-EYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSS 206 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCCcccccc-c------cccchhhccccCCc-ceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHH
Confidence 99999999998876655433 1 11112233455665 9999999999999999999999999999999999999
Q ss_pred ccccccccc
Q 025406 234 EVSALSREK 242 (253)
Q Consensus 234 Ea~gl~~~~ 242 (253)
|+.+|+|+.
T Consensus 207 e~~~~~~r~ 215 (215)
T PF02309_consen 207 EAKGLAPRA 215 (215)
T ss_dssp ---------
T ss_pred HhcccCCCC
Confidence 999999973
No 2
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.29 E-value=0.00073 Score=50.01 Aligned_cols=67 Identities=24% Similarity=0.420 Sum_probs=53.6
Q ss_pred eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406 131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM 210 (253)
Q Consensus 131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM 210 (253)
||+.-.|. +=|.+.+..--+|++|...+++.|... ...+.+.|.|.||||.
T Consensus 4 vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~----------------------------~~~~~l~Y~D~dgD~V 54 (84)
T PF00564_consen 4 VKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL----------------------------DEDFQLKYKDEDGDLV 54 (84)
T ss_dssp EEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS----------------------------TSSEEEEEEETTSSEE
T ss_pred EEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC----------------------------CccEEEEeeCCCCCEE
Confidence 79999995 333588888889999999999999620 1369999999999999
Q ss_pred EcCC-cChhhHhhcceE
Q 025406 211 LVGD-VPWHMFVSTVTR 226 (253)
Q Consensus 211 LVGD-VPWemFv~svKR 226 (253)
.+-+ .=|++.++.+++
T Consensus 55 ~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 55 TISSDEDLQEAIEQAKE 71 (84)
T ss_dssp EESSHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHh
Confidence 8875 468888887753
No 3
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=97.06 E-value=0.0033 Score=46.48 Aligned_cols=65 Identities=25% Similarity=0.378 Sum_probs=51.6
Q ss_pred eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406 131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM 210 (253)
Q Consensus 131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM 210 (253)
|||.-.|. -|.+-+..--+|++|.+.+.+.|.. . ...+.|.|+|.||||.
T Consensus 4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~---------------------------~-~~~~~l~Y~Dedgd~v 53 (81)
T smart00666 4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGL---------------------------D-NQSFTLKYQDEDGDLV 53 (81)
T ss_pred EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCC---------------------------C-CCCeEEEEECCCCCEE
Confidence 78887553 6778888889999999999999962 0 1368999999999998
Q ss_pred EcCC-cChhhHhhcce
Q 025406 211 LVGD-VPWHMFVSTVT 225 (253)
Q Consensus 211 LVGD-VPWemFv~svK 225 (253)
.+.+ .=|++.++.++
T Consensus 54 ~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 54 SLTSDEDLEEAIEEYD 69 (81)
T ss_pred EecCHHHHHHHHHHHH
Confidence 7665 57777777665
No 4
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=97.01 E-value=0.0029 Score=49.96 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=51.6
Q ss_pred ceEEEecCcccceeecCC---CCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCC
Q 025406 130 FVKINMDGVPIGRKVDLN---AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNE 206 (253)
Q Consensus 130 fVKV~MDGvpIgRKVDL~---~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkE 206 (253)
-|||+-+|.-+=-+++++ .--+|++|.+.+.+.|.. ....+|+|.|.|.|
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l---------------------------~~~~~~~l~Y~Ded 54 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSL---------------------------SPDADLSLTYTDED 54 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCC---------------------------CCCCcEEEEEECCC
Confidence 489999998444455543 467999999999999962 11247999999999
Q ss_pred CCeEEcCCcChhhHhhcceE
Q 025406 207 GDRMLVGDVPWHMFVSTVTR 226 (253)
Q Consensus 207 GDwMLVGDVPWemFv~svKR 226 (253)
|||...-+. +++...+.+
T Consensus 55 gd~V~l~~D--~DL~~a~~~ 72 (91)
T cd06398 55 GDVVTLVDD--NDLTDAIQY 72 (91)
T ss_pred CCEEEEccH--HHHHHHHHH
Confidence 999998776 666666655
No 5
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=96.97 E-value=0.0034 Score=48.55 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=43.3
Q ss_pred eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406 131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM 210 (253)
Q Consensus 131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM 210 (253)
|||...|. -+.+-|..--+|++|.+.+.++|.. +..+.|.|.|.|.||||.
T Consensus 3 vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~---------------------------~~~~~f~LkY~Ddegd~v 53 (82)
T cd06407 3 VKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKL---------------------------DDMSAFDLKYLDDDEEWV 53 (82)
T ss_pred EEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCC---------------------------CCCCeeEEEEECCCCCeE
Confidence 89999886 5556666666999999999999962 011479999999999998
Q ss_pred EcCC
Q 025406 211 LVGD 214 (253)
Q Consensus 211 LVGD 214 (253)
++--
T Consensus 54 ~lts 57 (82)
T cd06407 54 LLTC 57 (82)
T ss_pred Eeec
Confidence 7643
No 6
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=96.72 E-value=0.0083 Score=44.05 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=51.3
Q ss_pred eEEEecCcccceeecCC-CCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCe
Q 025406 131 VKINMDGVPIGRKVDLN-AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR 209 (253)
Q Consensus 131 VKV~MDGvpIgRKVDL~-~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDw 209 (253)
|||+-.|. -|.+=+. .--+|++|.+.|.+.|... ...+.+.|+|.||||
T Consensus 3 vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~----------------------------~~~~~l~y~D~e~d~ 52 (81)
T cd05992 3 VKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD----------------------------AVSFKLKYPDEDGDL 52 (81)
T ss_pred EEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC----------------------------CCcEEEEeeCCCCCE
Confidence 78888774 4555555 8889999999999999620 136899999999999
Q ss_pred EEcCC-cChhhHhhcceE
Q 025406 210 MLVGD-VPWHMFVSTVTR 226 (253)
Q Consensus 210 MLVGD-VPWemFv~svKR 226 (253)
..+.+ .=|++-++.+++
T Consensus 53 v~l~sd~Dl~~a~~~~~~ 70 (81)
T cd05992 53 VTISSDEDLEEAIEEARR 70 (81)
T ss_pred EEeCCHHHHHHHHHHHhh
Confidence 98887 577777777653
No 7
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=96.49 E-value=0.011 Score=46.36 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=44.9
Q ss_pred eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406 131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM 210 (253)
Q Consensus 131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM 210 (253)
|||.-.|.-+--+++-+..-+|++|.+.+.++|+- + .|.+.|-|.||||.
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l---------------------------~---~f~lKYlDde~e~v 52 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL---------------------------N---DIQIKYVDEENEEV 52 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC---------------------------C---cceeEEEcCCCCEE
Confidence 78999998777777777788999999999999951 2 58999999999998
Q ss_pred EcC
Q 025406 211 LVG 213 (253)
Q Consensus 211 LVG 213 (253)
++-
T Consensus 53 ~ls 55 (81)
T cd06396 53 SVN 55 (81)
T ss_pred EEE
Confidence 763
No 8
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=96.29 E-value=0.029 Score=44.03 Aligned_cols=72 Identities=22% Similarity=0.437 Sum_probs=49.0
Q ss_pred eEEEecCcccceeecCCCC-CChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCe
Q 025406 131 VKINMDGVPIGRKVDLNAY-DSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR 209 (253)
Q Consensus 131 VKV~MDGvpIgRKVDL~~y-~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDw 209 (253)
+|+.-+|. -|++=+..- -+|.+|...+++.|..- +..+..+.+.|.|.|||+
T Consensus 3 iK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~~-------------------------~~~~~~flIKYkD~dGDl 55 (81)
T cd06401 3 LKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRGK-------------------------LGSSDDVLIKYKDEDGDL 55 (81)
T ss_pred EEEEeCCe--EEEEeccCccccHHHHHHHHHHHhccc-------------------------cCCcccEEEEEECCCCCE
Confidence 67777663 455544443 39999999999999731 112457999999999999
Q ss_pred EEcCCc---ChhhHhhcceEeEE
Q 025406 210 MLVGDV---PWHMFVSTVTRLRV 229 (253)
Q Consensus 210 MLVGDV---PWemFv~svKRLrI 229 (253)
.-+.+- -|..=....+||+|
T Consensus 56 VTIts~~dL~~A~~~~~~~~l~~ 78 (81)
T cd06401 56 ITIFDSSDLSFAIQCSRILKLTL 78 (81)
T ss_pred EEeccHHHHHHHHhcCcceEEEE
Confidence 999874 34433334445554
No 9
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=95.11 E-value=0.05 Score=42.94 Aligned_cols=50 Identities=28% Similarity=0.421 Sum_probs=36.2
Q ss_pred ccceeecC--CCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeEEcC
Q 025406 139 PIGRKVDL--NAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVG 213 (253)
Q Consensus 139 pIgRKVDL--~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwMLVG 213 (253)
|-||.+=+ ....|+.+|.+++.+=|+.- . ...+.|.|.|.|.||||.+.-
T Consensus 8 ~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d-----------------------~--~~~~~~~L~YlDDEgD~VllT 59 (86)
T cd06409 8 PKGRVHRFRLRPSESLEELRTLISQRLGDD-----------------------D--FETHLYALSYVDDEGDIVLIT 59 (86)
T ss_pred CCCCEEEEEecCCCCHHHHHHHHHHHhCCc-----------------------c--ccCCcccEEEEcCCCCEEEEe
Confidence 45665444 44789999999999988520 0 002469999999999999864
No 10
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=94.98 E-value=0.077 Score=41.66 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=50.9
Q ss_pred eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406 131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM 210 (253)
Q Consensus 131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM 210 (253)
||.+-|+.=-=-.+|.....+|+++++-|+.||.. . .-.|++-|.|.+||.+
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l---------------------------~-~~~f~i~Y~D~~gDLL 54 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI---------------------------P-NVDFLIGYTDPHGDLL 54 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC---------------------------C-CCcEEEEEeCCCCCEe
Confidence 66666765222234555569999999999999962 1 1369999999999999
Q ss_pred EcC-CcChhhHhhcceE-eEEe
Q 025406 211 LVG-DVPWHMFVSTVTR-LRVL 230 (253)
Q Consensus 211 LVG-DVPWemFv~svKR-LrIm 230 (253)
-+- |+-...=++++++ |||.
T Consensus 55 PInNDdNf~kAlssa~plLRl~ 76 (80)
T cd06403 55 PINNDDNFLKALSSANPLLRIF 76 (80)
T ss_pred cccCcHHHHHHHHcCCCceEEE
Confidence 765 5566666677775 4443
No 11
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=94.98 E-value=0.085 Score=41.66 Aligned_cols=56 Identities=27% Similarity=0.328 Sum_probs=42.8
Q ss_pred eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406 131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM 210 (253)
Q Consensus 131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM 210 (253)
||+.-.|.-.--.+|. .-+|++|.+.+.+||.- .. ...|++.|.|.|||--
T Consensus 3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~--------------------------~~-~q~ft~kw~DEEGDp~ 53 (83)
T cd06404 3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF--------------------------HN-DQPFTLKWIDEEGDPC 53 (83)
T ss_pred EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC--------------------------CC-CCcEEEEEECCCCCce
Confidence 7888899755445555 77899999999999962 11 1369999999999987
Q ss_pred EcCCc
Q 025406 211 LVGDV 215 (253)
Q Consensus 211 LVGDV 215 (253)
-+...
T Consensus 54 tiSS~ 58 (83)
T cd06404 54 TISSQ 58 (83)
T ss_pred eecCH
Confidence 66653
No 12
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=94.72 E-value=0.11 Score=41.03 Aligned_cols=59 Identities=29% Similarity=0.429 Sum_probs=42.0
Q ss_pred ceEEEecC---cccceeecC--CCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEec
Q 025406 130 FVKINMDG---VPIGRKVDL--NAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYED 204 (253)
Q Consensus 130 fVKV~MDG---vpIgRKVDL--~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYED 204 (253)
.||.+..| .+=-|++-| ....+|++|.+.+.++|.. +.+ ..|++.|.|
T Consensus 2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~--------------------------l~~-~~ftlky~D 54 (87)
T cd06402 2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS--------------------------LRG-KNFQLFWKD 54 (87)
T ss_pred eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc--------------------------cCC-CcEEEEEEC
Confidence 56777666 233344444 6667999999999999952 111 379999999
Q ss_pred CCCCeEEcCCc
Q 025406 205 NEGDRMLVGDV 215 (253)
Q Consensus 205 kEGDwMLVGDV 215 (253)
.|||..-....
T Consensus 55 eeGDlvtIssd 65 (87)
T cd06402 55 EEGDLVAFSSD 65 (87)
T ss_pred CCCCEEeecCH
Confidence 99998876653
No 13
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=93.89 E-value=0.22 Score=39.35 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=50.9
Q ss_pred eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406 131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM 210 (253)
Q Consensus 131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM 210 (253)
-||+-+|. .|++....-=+|.+|.+.|+.+|... .. .+.++|-|.|||..
T Consensus 3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp---------------------------~~-~~~vtYiDeD~D~I 52 (82)
T cd06397 3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLP---------------------------EI-KVGVTYIDNDNDEI 52 (82)
T ss_pred EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCC---------------------------hh-HeEEEEEcCCCCEE
Confidence 48888885 89999888899999999999999631 01 38999999999987
Q ss_pred EcC-CcChhhHhhcceE
Q 025406 211 LVG-DVPWHMFVSTVTR 226 (253)
Q Consensus 211 LVG-DVPWemFv~svKR 226 (253)
-+- |.=-++|.+-..|
T Consensus 53 Tlssd~eL~d~~~~~~~ 69 (82)
T cd06397 53 TLSSNKELQDFYRLSHR 69 (82)
T ss_pred EecchHHHHHHHHhccc
Confidence 554 4556666654444
No 14
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=86.95 E-value=2.4 Score=33.60 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=49.1
Q ss_pred ceEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCe
Q 025406 130 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR 209 (253)
Q Consensus 130 fVKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDw 209 (253)
=|||+-.|. .|-|-+..-=+|++|...+.++|+. ...+++-|.|. ||.
T Consensus 4 kVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~-----------------------------~~~~~iKykDE-GD~ 51 (86)
T cd06408 4 RVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF-----------------------------KRRLKIKMKDD-GDM 51 (86)
T ss_pred EEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC-----------------------------CCceEEEEEcC-CCC
Confidence 488888887 6677777777899999999999961 13689999999 999
Q ss_pred EEcCCc-ChhhHhhcce
Q 025406 210 MLVGDV-PWHMFVSTVT 225 (253)
Q Consensus 210 MLVGDV-PWemFv~svK 225 (253)
.-++|- =-++=+.++|
T Consensus 52 iti~sq~DLd~Ai~~a~ 68 (86)
T cd06408 52 ITMGDQDDLDMAIDTAR 68 (86)
T ss_pred ccccCHHHHHHHHHHHH
Confidence 888874 3445555554
No 15
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=68.46 E-value=9.1 Score=30.92 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=29.8
Q ss_pred ecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406 144 VDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM 210 (253)
Q Consensus 144 VDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM 210 (253)
=||+.--+|.+|..-..+-|.. .+-.|-|.|.|||..
T Consensus 22 e~l~~~P~~kdLl~lmr~~f~~------------------------------~dIaLNYrD~EGDLI 58 (92)
T cd06399 22 EDLSSTPLLKDLLELTRREFQR------------------------------EDIALNYRDAEGDLI 58 (92)
T ss_pred cccccCccHHHHHHHHHHHhch------------------------------hheeeeeecCCCCEE
Confidence 3788888999998888888852 245899999999974
No 16
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=46.48 E-value=17 Score=26.02 Aligned_cols=17 Identities=24% Similarity=0.698 Sum_probs=14.6
Q ss_pred EEEEecCCCCeEEcCCc
Q 025406 199 TLVYEDNEGDRMLVGDV 215 (253)
Q Consensus 199 vltYEDkEGDwMLVGDV 215 (253)
.+.|.|.||+.+++|+.
T Consensus 34 ~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEEETTSSEEEES-E
T ss_pred eEEEEcCCCCEEEEeEE
Confidence 58899999999999984
No 17
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=39.40 E-value=52 Score=26.46 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=33.0
Q ss_pred cCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeEEcC
Q 025406 136 DGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVG 213 (253)
Q Consensus 136 DGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwMLVG 213 (253)
+|..+--.||....=++.++..++.+.... ..--.+-|||.|||+.-|-
T Consensus 9 ~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~-----------------------------aT~tAFeYEDE~gDRITVR 57 (91)
T cd06395 9 NGGAVDWTVQSGPQLLFRDVLDVIGQVLPE-----------------------------ATTTAFEYEDEDGDRITVR 57 (91)
T ss_pred CCCcccccccCcccccHHHHHHHHHHhccc-----------------------------ccccceeeccccCCeeEec
Confidence 344556667777777888888877765531 0122566999999988764
No 18
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=36.78 E-value=22 Score=34.84 Aligned_cols=49 Identities=29% Similarity=0.393 Sum_probs=39.4
Q ss_pred ecCCCCeEEcCCcChh-----------------hHhhcceEeEEecCcccccccccccCcchhhhcc
Q 025406 203 EDNEGDRMLVGDVPWH-----------------MFVSTVTRLRVLKSSEVSALSREKFGNSRQDKIL 252 (253)
Q Consensus 203 EDkEGDwMLVGDVPWe-----------------mFv~svKRLrImk~SEa~gl~~~~~~~~~~~~~~ 252 (253)
.+-||||.-||. ||. .|-+-++-+-|++.....-++...-+-|++||+.
T Consensus 149 ip~dgdw~nv~~-~wn~T~pe~FGwdgDGlRghVF~nd~~~vv~~~~kgtSi~Gl~g~gTs~kDk~n 214 (425)
T KOG4540|consen 149 IPLDGDWRNVTE-PWNETVPETFGWDGDGLRGHVFGNDGKIVVAFKGKGTSIMGLEGGGTSRKDKLN 214 (425)
T ss_pred CCCCCcccccCC-CcccCCccccCcCCCCceeeeeccCCceEEEEEeccceEEeeccCCccccccch
Confidence 388999999985 676 5888889888888888777777666678888874
No 19
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=36.78 E-value=22 Score=34.84 Aligned_cols=49 Identities=29% Similarity=0.393 Sum_probs=39.4
Q ss_pred ecCCCCeEEcCCcChh-----------------hHhhcceEeEEecCcccccccccccCcchhhhcc
Q 025406 203 EDNEGDRMLVGDVPWH-----------------MFVSTVTRLRVLKSSEVSALSREKFGNSRQDKIL 252 (253)
Q Consensus 203 EDkEGDwMLVGDVPWe-----------------mFv~svKRLrImk~SEa~gl~~~~~~~~~~~~~~ 252 (253)
.+-||||.-||. ||. .|-+-++-+-|++.....-++...-+-|++||+.
T Consensus 149 ip~dgdw~nv~~-~wn~T~pe~FGwdgDGlRghVF~nd~~~vv~~~~kgtSi~Gl~g~gTs~kDk~n 214 (425)
T COG5153 149 IPLDGDWRNVTE-PWNETVPETFGWDGDGLRGHVFGNDGKIVVAFKGKGTSIMGLEGGGTSRKDKLN 214 (425)
T ss_pred CCCCCcccccCC-CcccCCccccCcCCCCceeeeeccCCceEEEEEeccceEEeeccCCccccccch
Confidence 388999999985 676 5888889888888888777777666678888874
No 20
>PF14688 DUF4461: Domain of unknown function (DUF4461)
Probab=22.30 E-value=56 Score=31.08 Aligned_cols=28 Identities=39% Similarity=0.824 Sum_probs=20.5
Q ss_pred eEEEEe-----cCCCCeEE-cCCcC--hhhHhhcce
Q 025406 198 YTLVYE-----DNEGDRML-VGDVP--WHMFVSTVT 225 (253)
Q Consensus 198 yvltYE-----DkEGDwML-VGDVP--WemFv~svK 225 (253)
.+|++- |.+|+.|| +|||| |..|++.+.
T Consensus 82 ~tvvF~~~sGv~~~G~v~L~~~Dv~~~W~~~l~~l~ 117 (313)
T PF14688_consen 82 RTVVFGDFSGVSLDGHVMLGTGDVPHQWTSFLERLP 117 (313)
T ss_pred CEEEecCCCccCCCCCEEecCCCcHHHHHHHHHhCC
Confidence 455554 67899887 78886 888887665
No 21
>PF02013 CBM_10: Cellulose or protein binding domain; InterPro: IPR002883 This domain is found in two distinct sets of proteins with different functions. Those found in aerobic bacteria bind cellulose (or other carbohydrates); but in anaerobic fungi they are protein binding domains, referred to as dockerin domains or docking domains. They are believed to be responsible for the assembly of a multiprotein cellulase/hemicellulase complex, similar to the cellulosome found in certain anaerobic bacteria. The recycling of photosynthetically fixed carbon in plant cell walls is a key microbial process. Enzyme systems that attack the plant cell wall contain noncatalytic carbohydrate-binding modules that mediate attachment to this composite structure and play a pivotal role in maximizing the hydrolytic process. In anaerobes, the degradation is carried out by a high molecular weight, multifunctional complex termed the cellulosome. This consists of a number of independent enzyme components, each of which contains a conserved 40-residue dockerin domain, which functions to bind the enzyme to a cohesin domain within the scaffoldin protein [, ]. In anaerobic bacteria that degrade plant cell walls, exemplified by Clostridium thermocellum, the dockerin domains of the catalytic polypeptides can bind equally well to any cohesin from the same organism. More recently, anaerobic fungi, typified by Piromyces equi, have been suggested to also synthesise a cellulosome complex, although the dockerin sequences of the bacterial and fungal enzymes are completely different []. For example, the fungal enzymes contain one, two or three copies of the dockerin sequence in tandem within the catalytic polypeptide. In contrast, all the C. thermocellum cellulosome catalytic components contain a single dockerin domain. The anaerobic bacterial dockerins are homologous to EF hands (calcium-binding motifs) and require calcium for activity whereas the fungal dockerin does not require calcium. Finally, the interaction between cohesin and dockerin appears to be species specific in bacteria, there is almost no species specificity of binding within fungal species and no identified sites that distinguish different species. The structure of dockerin from P. equi contains two helical stretches and four short beta-strands which form an antiparallel sheet structure adjacent to an additional short twisted parallel strand. The N- and C-termini are adjacent to each other. Aerobic bacteria contain related regions, however these appear to function as cellulose/carbohydrate binding domains.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2J4M_A 2J4N_A 1E8R_A 1QLD_A 1E8P_A 1E8Q_A.
Probab=20.82 E-value=28 Score=23.49 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=8.8
Q ss_pred EEEEecCCCCeE
Q 025406 199 TLVYEDNEGDRM 210 (253)
Q Consensus 199 vltYEDkEGDwM 210 (253)
.+.|.|.+|+|=
T Consensus 16 ~v~y~d~~g~WG 27 (36)
T PF02013_consen 16 EVVYTDDDGGWG 27 (36)
T ss_dssp --SEEETTEEEE
T ss_pred ceEEcCCCCCEe
Confidence 678999999983
Done!