Query 025406
Match_columns 253
No_of_seqs 165 out of 527
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 09:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 95.8 0.02 6.8E-07 44.2 6.4 57 129-214 7-63 (89)
2 1wmh_B Partitioning defective- 95.4 0.038 1.3E-06 42.6 6.4 69 129-225 7-76 (86)
3 2kkc_A Sequestosome-1; P62, PB 94.6 0.056 1.9E-06 42.6 5.7 61 128-215 5-80 (102)
4 2ktr_A Sequestosome-1; autopha 93.3 0.16 5.4E-06 41.1 6.0 62 127-215 19-95 (117)
5 1q1o_A Cell division control p 87.9 1.4 4.8E-05 34.5 6.6 74 129-225 6-86 (98)
6 1oey_J P40-PHOX, neutrophil cy 83.7 1.8 6.1E-05 34.6 5.3 40 145-214 28-67 (107)
7 1pqs_A Cell division control p 77.4 1.9 6.5E-05 32.2 3.3 56 146-225 8-65 (77)
8 2bkf_A Zinc-finger protein NBR 73.6 10 0.00034 29.2 6.6 54 130-213 8-61 (87)
9 1wj6_A KIAA0049 protein, RSGI 71.4 6.4 0.00022 31.1 5.1 63 130-224 16-78 (101)
10 1e8p_A Endoglucanase, dockerin 57.6 3.1 0.00011 28.8 0.8 13 199-211 20-32 (46)
11 1oey_A P67-PHOX, neutrophil cy 42.0 64 0.0022 24.3 6.0 69 130-229 7-78 (83)
12 2j4m_A Endoglucanase 45A; dock 28.8 12 0.00042 29.5 0.1 13 199-211 21-33 (100)
13 3o27_A Putative uncharacterize 26.1 40 0.0014 24.9 2.4 17 196-212 43-59 (68)
14 2npt_A Dual specificity mitoge 26.0 1.3E+02 0.0044 23.8 5.4 57 129-214 15-72 (106)
15 2i1s_A Hypothetical protein; m 21.5 71 0.0024 26.4 3.5 35 130-164 10-46 (188)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.84 E-value=0.02 Score=44.20 Aligned_cols=57 Identities=23% Similarity=0.240 Sum_probs=42.7
Q ss_pred CceEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCC
Q 025406 129 PFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGD 208 (253)
Q Consensus 129 ~fVKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGD 208 (253)
+=||++-.|.-+ .+.+..--+|++|...|.++|.- .. ...+++.|.|.|||
T Consensus 7 vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~--------------------------~~-~~~f~lky~DEeGD 57 (89)
T 1vd2_A 7 VRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSF--------------------------DN-EQLFTMKWIDEEGD 57 (89)
T ss_dssp EEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTC--------------------------CS-SCCEEEEECCSSSC
T ss_pred EEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCC--------------------------CC-CCeEEEEEECCCCC
Confidence 568889999744 44444456999999999999962 01 13699999999999
Q ss_pred eEEcCC
Q 025406 209 RMLVGD 214 (253)
Q Consensus 209 wMLVGD 214 (253)
+.-+-.
T Consensus 58 ~itisS 63 (89)
T 1vd2_A 58 PCTVSS 63 (89)
T ss_dssp CEECCS
T ss_pred cccccC
Confidence 876543
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.36 E-value=0.038 Score=42.62 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=50.6
Q ss_pred CceEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCC
Q 025406 129 PFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGD 208 (253)
Q Consensus 129 ~fVKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGD 208 (253)
.-||.+-|+.--=-.+|-+.-.+|++|..-|+++|.. . ..+|++.|.|.|||
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L---------------------------~-~~~f~i~Y~D~dGD 58 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI---------------------------P-GLDVLLGYTDAHGD 58 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC---------------------------T-TCCCEEEEECTTSC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC---------------------------C-CCCEEEEEECCCCC
Confidence 4588888886322345555678999999999999961 1 13699999999999
Q ss_pred eEEcCCc-ChhhHhhcce
Q 025406 209 RMLVGDV-PWHMFVSTVT 225 (253)
Q Consensus 209 wMLVGDV-PWemFv~svK 225 (253)
++-.-+. -..+=+.++|
T Consensus 59 LlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 59 LLPLTNDDSLHRALASGP 76 (86)
T ss_dssp EEECCSHHHHHHHTTSSS
T ss_pred EeeecCHHHHHHHHHhCC
Confidence 9987664 4555556666
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=94.63 E-value=0.056 Score=42.61 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=44.0
Q ss_pred CCceEEEecCc----ccceeecCCC-----------CCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccC
Q 025406 128 NPFVKINMDGV----PIGRKVDLNA-----------YDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVL 192 (253)
Q Consensus 128 ~~fVKV~MDGv----pIgRKVDL~~-----------y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll 192 (253)
++-||++..|. .=-|++-|.. -.+|++|...++++|.. |
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~--------------------------l 58 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA--------------------------L 58 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT--------------------------S
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc--------------------------c
Confidence 35688888752 3346555532 24899999999999963 1
Q ss_pred CCCCceEEEEecCCCCeEEcCCc
Q 025406 193 DGSGEYTLVYEDNEGDRMLVGDV 215 (253)
Q Consensus 193 ~gs~eyvltYEDkEGDwMLVGDV 215 (253)
.+ .+|.+.|.|.|||..-..+.
T Consensus 59 ~~-~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 59 RP-GGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp CS-SCEEEEEECTTCCEEEECSH
T ss_pred CC-CcEEEEEECCCCCEEEecCH
Confidence 12 36999999999998877664
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=93.33 E-value=0.16 Score=41.12 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=44.6
Q ss_pred CCCceEEEecC----cccceeecCC-----------CCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhcc
Q 025406 127 KNPFVKINMDG----VPIGRKVDLN-----------AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGV 191 (253)
Q Consensus 127 ~~~fVKV~MDG----vpIgRKVDL~-----------~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~l 191 (253)
.++-||++..| ..==|++-|. .-.+|++|...++++|..
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~-------------------------- 72 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA-------------------------- 72 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT--------------------------
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc--------------------------
Confidence 45789999975 1224555554 135999999999999952
Q ss_pred CCCCCceEEEEecCCCCeEEcCCc
Q 025406 192 LDGSGEYTLVYEDNEGDRMLVGDV 215 (253)
Q Consensus 192 l~gs~eyvltYEDkEGDwMLVGDV 215 (253)
|.+ ..|.+.|.|.|||+.-.-..
T Consensus 73 L~~-~~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 73 LRP-GGFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp SCS-SCEEEEEECTTCCEEEECSH
T ss_pred cCC-CcEEEEEECCCCCEEEecCH
Confidence 112 36999999999998876653
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=87.87 E-value=1.4 Score=34.52 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=52.4
Q ss_pred CceEEEecCcc----c--ceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEE
Q 025406 129 PFVKINMDGVP----I--GRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVY 202 (253)
Q Consensus 129 ~fVKV~MDGvp----I--gRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltY 202 (253)
.-|||+-++.. + .|.|=...-=+|++|...+.+-|..+.. .+ . +....+-|
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~--------------------~~-i--~~~~klkY 62 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN--------------------NN-I--SPITKIKY 62 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS--------------------SC-C--CCCCCEEE
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc--------------------cc-c--cceeEEEE
Confidence 45777766321 2 2566667778999999999999974300 00 0 13468999
Q ss_pred ecCCCCeEEcCC-cChhhHhhcce
Q 025406 203 EDNEGDRMLVGD-VPWHMFVSTVT 225 (253)
Q Consensus 203 EDkEGDwMLVGD-VPWemFv~svK 225 (253)
+|.|||+...++ .=|+|=+++++
T Consensus 63 kDEdGD~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 63 QDEDGDFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp ECSSSCEEEECSHHHHHHHHHHHH
T ss_pred EcCCCCEEEEcCHHHHHHHHHHHH
Confidence 999999988776 58999888763
No 6
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=83.67 E-value=1.8 Score=34.62 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=32.4
Q ss_pred cCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeEEcCC
Q 025406 145 DLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGD 214 (253)
Q Consensus 145 DL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwMLVGD 214 (253)
||+.--+|.+|..-..+-|.. .+-+|-|.|.|||+.-+=|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~------------------------------~DIaLNYrD~eGDLIrild 67 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQR------------------------------EDIALNYRDAEGDLVRLLS 67 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCC------------------------------SSEEEEEECTTSCEEECCS
T ss_pred ccccCCCHHHHHHHHHHHhcc------------------------------cceeeeeecCCCCEEEEcc
Confidence 677888999999999998851 2568999999999965444
No 7
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=77.37 E-value=1.9 Score=32.19 Aligned_cols=56 Identities=16% Similarity=0.379 Sum_probs=41.1
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCC-CCceEEEEecCCCCeEEcCC-cChhhHhhc
Q 025406 146 LNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDG-SGEYTLVYEDNEGDRMLVGD-VPWHMFVST 223 (253)
Q Consensus 146 L~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~g-s~eyvltYEDkEGDwMLVGD-VPWemFv~s 223 (253)
...--+|++|...+.+-|..+ ++ ++ +....+-|+|.|||+.-.++ .=|+|=+++
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~------~~------------------~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~ 63 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNT------HN------------------NNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 63 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTT------TS------------------SCSCSTTCCEEEETTTEEEECCSTTHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHccc------cc------------------ccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 344558999999999988632 00 01 24578999999999987765 589998887
Q ss_pred ce
Q 025406 224 VT 225 (253)
Q Consensus 224 vK 225 (253)
+|
T Consensus 64 ~~ 65 (77)
T 1pqs_A 64 LA 65 (77)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=73.58 E-value=10 Score=29.23 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=40.0
Q ss_pred ceEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCe
Q 025406 130 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR 209 (253)
Q Consensus 130 fVKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDw 209 (253)
-+||.-.|...---|.-..--++++|...+..+|+ | +.+++.|-|.|||-
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~---------------------------L---~~~~ikY~DEenD~ 57 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD---------------------------L---NTIQIKYLDEENEE 57 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT---------------------------C---SSEEEEEECTTSCE
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcC---------------------------C---CceEEEEEcCCCCE
Confidence 47899999743333544447789998888888884 1 26899999999998
Q ss_pred EEcC
Q 025406 210 MLVG 213 (253)
Q Consensus 210 MLVG 213 (253)
.-|=
T Consensus 58 v~i~ 61 (87)
T 2bkf_A 58 VSIN 61 (87)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7653
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=71.35 E-value=6.4 Score=31.13 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=45.3
Q ss_pred ceEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCe
Q 025406 130 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR 209 (253)
Q Consensus 130 fVKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDw 209 (253)
-+||.-.|...---|.-..--++++|...+..+|+ | ..+++.|-|.|||-
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~---------------------------L---~~~~IkY~DEenD~ 65 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD---------------------------L---NTIQIKYLDEENEE 65 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHC---------------------------C---SSBCCEEECTTSCE
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcC---------------------------C---CceEEEEecCCCCE
Confidence 48999999854434644457789998888888884 1 25799999999998
Q ss_pred EEcCCcChhhHhhcc
Q 025406 210 MLVGDVPWHMFVSTV 224 (253)
Q Consensus 210 MLVGDVPWemFv~sv 224 (253)
.-|=- +.+|-+.+
T Consensus 66 V~i~S--q~E~eEAl 78 (101)
T 1wj6_A 66 VSINS--QGEYEEAL 78 (101)
T ss_dssp ECCCS--HHHHHHHH
T ss_pred EEEec--HHHHHHHH
Confidence 77643 55555443
No 10
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=57.57 E-value=3.1 Score=28.76 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=11.3
Q ss_pred EEEEecCCCCeEE
Q 025406 199 TLVYEDNEGDRML 211 (253)
Q Consensus 199 vltYEDkEGDwML 211 (253)
.++|+|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 5899999999954
No 11
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=41.99 E-value=64 Score=24.26 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=50.6
Q ss_pred ceEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEec-CCCC
Q 025406 130 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYED-NEGD 208 (253)
Q Consensus 130 fVKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYED-kEGD 208 (253)
=|||+-. +.--|....=-+|.+|...|.+=+.-. ..+-+|-|.| .+|.
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~----------------------------~~~~~LsYk~~~s~~ 55 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR----------------------------LEHTKLSYRPRDSNE 55 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC----------------------------GGGCCEEECCTTCSS
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC----------------------------cceeEEEeeCCCCCC
Confidence 4666666 677777788889999999998877420 0133788999 6888
Q ss_pred eEEcCCcChhhHhhcce--EeEE
Q 025406 209 RMLVGDVPWHMFVSTVT--RLRV 229 (253)
Q Consensus 209 wMLVGDVPWemFv~svK--RLrI 229 (253)
|++.+|.-|+.-.+.|+ ||++
T Consensus 56 ~vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 56 LVPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp CEECCTTTHHHHHTTCBTTEEEE
T ss_pred eeccChHHHHHHHHhccCCcEEE
Confidence 99999999988777744 4544
No 12
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=28.75 E-value=12 Score=29.49 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=11.3
Q ss_pred EEEEecCCCCeEE
Q 025406 199 TLVYEDNEGDRML 211 (253)
Q Consensus 199 vltYEDkEGDwML 211 (253)
.++|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 6889999999964
No 13
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=26.12 E-value=40 Score=24.87 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=15.1
Q ss_pred CceEEEEecCCCCeEEc
Q 025406 196 GEYTLVYEDNEGDRMLV 212 (253)
Q Consensus 196 ~eyvltYEDkEGDwMLV 212 (253)
.++.+++||++|+..|+
T Consensus 43 D~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 43 DTFILNMEQKDGDIVLS 59 (68)
T ss_dssp CCEEEEEEEETTEEEEE
T ss_pred CEEEEEEecCCCeEEEE
Confidence 48999999999998874
No 14
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=26.04 E-value=1.3e+02 Score=23.76 Aligned_cols=57 Identities=16% Similarity=0.323 Sum_probs=38.7
Q ss_pred CceEEEec-CcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCC
Q 025406 129 PFVKINMD-GVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEG 207 (253)
Q Consensus 129 ~fVKV~MD-GvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEG 207 (253)
.-+.++-. |..+--.||-...=++.+|..++.+..-. ..--.+-|||.+|
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~-----------------------------aT~TAFeYEDE~g 65 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPE-----------------------------ATTTAFEYEDEDG 65 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTT-----------------------------SCCSEEEEECTTS
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCcc-----------------------------ceeeeeeeccccC
Confidence 44566655 66777788877777899998888776531 0123677999999
Q ss_pred CeEEcCC
Q 025406 208 DRMLVGD 214 (253)
Q Consensus 208 DwMLVGD 214 (253)
|+.-|--
T Consensus 66 DRITVRS 72 (106)
T 2npt_A 66 DRITVRS 72 (106)
T ss_dssp CEEEECS
T ss_pred CeeEEcc
Confidence 9887743
No 15
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=21.53 E-value=71 Score=26.38 Aligned_cols=35 Identities=17% Similarity=0.443 Sum_probs=33.0
Q ss_pred ceEEEecCc--ccceeecCCCCCChHHHHHHHHHHhh
Q 025406 130 FVKINMDGV--PIGRKVDLNAYDSYEKLSAAVDELFR 164 (253)
Q Consensus 130 fVKV~MDGv--pIgRKVDL~~y~sY~eL~~aLe~MF~ 164 (253)
-+||..+|+ +|=|.|.+..--+..+|..+|+..|+
T Consensus 10 ~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 10 HLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 499999986 89999999999999999999999996
Done!