Query 025407
Match_columns 253
No_of_seqs 172 out of 841
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 05:28:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.5 1.2E-13 2.7E-18 96.7 6.0 53 186-238 6-60 (60)
2 smart00353 HLH helix loop heli 99.4 4.8E-13 1E-17 92.4 6.4 50 189-238 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.4 4.2E-13 9.2E-18 94.2 5.6 48 187-234 4-55 (55)
4 KOG1319 bHLHZip transcription 99.2 5.3E-12 1.2E-16 111.9 4.3 88 155-245 34-129 (229)
5 KOG1318 Helix loop helix trans 99.2 2.3E-11 5E-16 117.4 7.4 60 179-238 228-290 (411)
6 KOG4304 Transcriptional repres 98.6 2.8E-08 6.1E-13 90.6 3.4 50 188-237 36-92 (250)
7 KOG2588 Predicted DNA-binding 98.5 1.2E-07 2.6E-12 99.0 5.1 64 182-245 274-337 (953)
8 KOG3960 Myogenic helix-loop-he 98.5 3.4E-07 7.4E-12 84.4 6.7 71 175-245 106-180 (284)
9 KOG3561 Aryl-hydrocarbon recep 98.4 3.6E-07 7.9E-12 94.7 5.4 52 185-236 21-75 (803)
10 KOG2483 Upstream transcription 98.1 1.3E-05 2.8E-10 72.9 7.7 60 184-243 59-120 (232)
11 KOG4029 Transcription factor H 97.7 2.2E-05 4.8E-10 69.7 2.9 58 187-244 112-172 (228)
12 KOG0561 bHLH transcription fac 97.7 2.6E-05 5.6E-10 74.0 3.3 61 175-240 55-117 (373)
13 PLN03217 transcription factor 97.4 0.00031 6.6E-09 56.0 5.5 51 196-246 19-74 (93)
14 KOG3910 Helix loop helix trans 96.5 0.0038 8.3E-08 62.8 5.0 52 188-239 530-584 (632)
15 KOG4447 Transcription factor T 92.5 0.065 1.4E-06 47.0 1.6 49 188-237 82-132 (173)
16 KOG3558 Hypoxia-inducible fact 89.7 0.26 5.7E-06 51.6 3.0 44 189-232 51-97 (768)
17 KOG3559 Transcriptional regula 84.8 0.99 2.1E-05 45.3 3.7 44 190-233 7-53 (598)
18 KOG4395 Transcription factor A 82.2 2 4.3E-05 40.6 4.4 50 188-237 178-229 (285)
19 KOG3898 Transcription factor N 79.6 1.2 2.5E-05 41.1 2.0 47 189-235 77-125 (254)
20 KOG3560 Aryl-hydrocarbon recep 79.4 2.1 4.6E-05 44.3 3.9 40 192-231 33-75 (712)
21 PHA00370 III attachment protei 72.7 8.4 0.00018 36.6 5.6 44 75-119 208-253 (297)
22 KOG3582 Mlx interactors and re 71.2 3.2 6.9E-05 44.0 2.7 59 186-244 653-715 (856)
23 COG3074 Uncharacterized protei 54.9 19 0.0004 28.3 3.6 26 222-247 12-37 (79)
24 PF09321 DUF1978: Domain of un 46.3 35 0.00076 31.9 4.6 19 197-215 116-134 (241)
25 PRK15422 septal ring assembly 45.4 31 0.00068 27.2 3.6 25 222-246 12-36 (79)
26 PF06005 DUF904: Protein of un 42.8 40 0.00086 25.7 3.8 23 223-245 13-35 (72)
27 PRK13702 replication protein; 42.2 54 0.0012 26.3 4.5 43 186-228 22-76 (85)
28 PF14689 SPOB_a: Sensor_kinase 36.4 1E+02 0.0022 22.3 4.9 41 193-241 17-57 (62)
29 TIGR00986 3a0801s05tom22 mitoc 34.7 29 0.00063 30.2 2.1 36 197-233 49-84 (145)
30 KOG0105 Alternative splicing f 31.9 43 0.00093 30.9 2.8 14 20-33 100-113 (241)
31 KOG4005 Transcription factor X 31.9 1.6E+02 0.0035 28.0 6.6 52 188-246 63-115 (292)
32 KOG4447 Transcription factor T 31.6 35 0.00076 30.3 2.1 24 191-214 29-52 (173)
33 PF05781 MRVI1: MRVI1 protein; 30.1 91 0.002 32.3 5.1 55 188-249 222-276 (538)
34 KOG4571 Activating transcripti 27.7 1.1E+02 0.0024 29.4 4.9 22 218-239 269-290 (294)
35 PRK11020 hypothetical protein; 27.6 1.2E+02 0.0026 25.6 4.6 50 196-246 7-56 (118)
36 PLN03106 TCP2 Protein TCP2; Pr 26.6 51 0.0011 32.9 2.5 47 52-98 238-285 (447)
37 KOG3582 Mlx interactors and re 26.3 24 0.00051 37.8 0.2 55 186-243 789-847 (856)
38 smart00338 BRLZ basic region l 25.9 83 0.0018 22.6 3.0 15 229-243 27-41 (65)
39 PF08826 DMPK_coil: DMPK coile 25.8 2.4E+02 0.0051 21.1 5.4 50 191-246 8-57 (61)
40 PHA00370 III attachment protei 25.0 67 0.0014 30.7 2.9 9 42-50 157-165 (297)
41 PF13870 DUF4201: Domain of un 24.3 3.6E+02 0.0078 22.9 7.0 52 192-246 117-170 (177)
42 KOG3915 Transcription regulato 24.2 72 0.0016 33.0 3.1 20 218-237 507-526 (641)
43 PF04281 Tom22: Mitochondrial 23.8 57 0.0012 27.9 2.0 18 197-214 51-68 (137)
44 PF02344 Myc-LZ: Myc leucine z 22.8 91 0.002 20.9 2.4 16 193-208 14-29 (32)
45 PF00170 bZIP_1: bZIP transcri 22.7 1E+02 0.0022 22.1 2.9 19 190-208 15-33 (64)
46 KOG3074 Transcriptional regula 21.7 57 0.0012 30.8 1.7 14 33-46 65-78 (263)
47 PF03233 Cauli_AT: Aphid trans 21.0 1.5E+02 0.0033 26.3 4.2 52 192-246 109-160 (163)
48 TIGR02877 spore_yhbH sporulati 20.9 96 0.0021 30.7 3.2 21 30-50 109-129 (371)
49 PHA03011 hypothetical protein; 20.8 1.2E+02 0.0026 25.4 3.2 48 197-247 71-118 (120)
50 PF13805 Pil1: Eisosome compon 20.5 2.4E+02 0.0051 26.8 5.6 31 192-226 143-173 (271)
51 KOG3896 Dynactin, subunit p62 20.3 1.1E+02 0.0023 30.7 3.3 27 220-246 138-164 (449)
52 PF04508 Pox_A_type_inc: Viral 20.3 1.3E+02 0.0028 18.7 2.5 19 230-248 3-21 (23)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.46 E-value=1.2e-13 Score=96.73 Aligned_cols=53 Identities=36% Similarity=0.673 Sum_probs=48.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhcCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 025407 186 HPRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIE 238 (253)
Q Consensus 186 ~~HsiaERrRRerINer~~~LrsLVP~~--~Kk~DKAsILeeAIdYIk~LQ~qVk 238 (253)
..|+.+||+||++||+.|..|+++||.. ..++||++||+.||+||++|+.+++
T Consensus 6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4599999999999999999999999999 3559999999999999999999863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.41 E-value=4.8e-13 Score=92.43 Aligned_cols=50 Identities=34% Similarity=0.664 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhcCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 025407 189 SIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIE 238 (253)
Q Consensus 189 siaERrRRerINer~~~LrsLVP~~--~Kk~DKAsILeeAIdYIk~LQ~qVk 238 (253)
+.+||+||++||+.|..|+.+||.+ ..++||++||.+||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999963 3348999999999999999999886
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.40 E-value=4.2e-13 Score=94.22 Aligned_cols=48 Identities=35% Similarity=0.639 Sum_probs=44.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhcCCC----CCCCChhhHHHHHHHHHHHHH
Q 025407 187 PRSIAERVRRTRISDRIRKLQDLVPNM----DKQTNTADMLEEAVEYVKFLQ 234 (253)
Q Consensus 187 ~HsiaERrRRerINer~~~LrsLVP~~----~Kk~DKAsILeeAIdYIk~LQ 234 (253)
.|+..||+||++||+.|..|+.+||.+ ..+++|++||+.||+||++||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 489999999999999999999999997 345999999999999999997
No 4
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.24 E-value=5.3e-12 Score=111.93 Aligned_cols=88 Identities=25% Similarity=0.333 Sum_probs=65.0
Q ss_pred CCCCCccchhhhhhhccCC--CccccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhhhcCCCCC------CCChhhHHHHH
Q 025407 155 GGVSNLVDMDMEKLLEDSV--PCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDK------QTNTADMLEEA 226 (253)
Q Consensus 155 ~ssSs~~~~~~Ek~~~d~v--~~k~r~Kr~~a~~~HsiaERrRRerINer~~~LrsLVP~~~K------k~DKAsILeeA 226 (253)
+++++.++.++++..--+. ...++.+|+. .|..+||+||+.||..+..|++|||.|.. ++.||.||..+
T Consensus 34 tsssSApNtdd~ds~~hS~a~k~syk~rrr~---aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqks 110 (229)
T KOG1319|consen 34 TSASSAPNTDDEDSDYHSEAYKESYKDRRRR---AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKT 110 (229)
T ss_pred CCCCCCCCCCcccccchhHHHHhhHHHHHHH---HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHH
Confidence 3445566666655431111 1223444443 49999999999999999999999998764 36799999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 025407 227 VEYVKFLQKQIEELTEHQR 245 (253)
Q Consensus 227 IdYIk~LQ~qVk~Le~e~~ 245 (253)
|+||.+|..++.+.+++..
T Consensus 111 idyi~~L~~~k~kqe~e~s 129 (229)
T KOG1319|consen 111 IDYIQFLHKEKKKQEEEVS 129 (229)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999888777654
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.21 E-value=2.3e-11 Score=117.40 Aligned_cols=60 Identities=27% Similarity=0.541 Sum_probs=51.8
Q ss_pred CcCCCCCCCCcHHHHHHHHHHHHHHHHHhhhcCCCCC---CCChhhHHHHHHHHHHHHHHHHH
Q 025407 179 AKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIE 238 (253)
Q Consensus 179 ~Kr~~a~~~HsiaERrRRerINer~~~LrsLVP~~~K---k~DKAsILeeAIdYIk~LQ~qVk 238 (253)
.|.+++++.|+.+|||||++||++|++|..|||.|.. +++|..||..++|||+.||+..+
T Consensus 228 ~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 228 ERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 3444455679999999999999999999999999843 36899999999999999998765
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.59 E-value=2.8e-08 Score=90.65 Aligned_cols=50 Identities=34% Similarity=0.549 Sum_probs=45.0
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhcCCCCC-------CCChhhHHHHHHHHHHHHHHHH
Q 025407 188 RSIAERVRRTRISDRIRKLQDLVPNMDK-------QTNTADMLEEAVEYVKFLQKQI 237 (253)
Q Consensus 188 HsiaERrRRerINer~~~LrsLVP~~~K-------k~DKAsILeeAIdYIk~LQ~qV 237 (253)
|-+.|||||.|||+-|.+|++|||.+.+ +++||.||+-||+|++.||...
T Consensus 36 Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 36 KPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 6789999999999999999999997543 3789999999999999999764
No 7
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.49 E-value=1.2e-07 Score=99.03 Aligned_cols=64 Identities=30% Similarity=0.482 Sum_probs=56.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 025407 182 GCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELTEHQR 245 (253)
Q Consensus 182 ~~a~~~HsiaERrRRerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~ 245 (253)
+.++.+||++|||-|..||++|.+|+++||+..-++.|..+|..||+||++||...+.+..++.
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~ 337 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENA 337 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhh
Confidence 3456789999999999999999999999999887799999999999999999988766665443
No 8
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.46 E-value=3.4e-07 Score=84.40 Aligned_cols=71 Identities=18% Similarity=0.442 Sum_probs=57.1
Q ss_pred ccccCcCCCCCCCC---cHHHHHHHHHHHHHHHHH-hhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 025407 175 CRVRAKRGCATHPR---SIAERVRRTRISDRIRKL-QDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELTEHQR 245 (253)
Q Consensus 175 ~k~r~Kr~~a~~~H---siaERrRRerINer~~~L-rsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~ 245 (253)
||+.+|+.-..+.+ .+.||||-.||||.|.+| |.-+++..+++-|..||..||+||..||.-++++.+...
T Consensus 106 ckackrks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 106 CKACKRKSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred hhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 55555544333333 466999999999999999 667899999999999999999999999999888775544
No 9
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.38 E-value=3.6e-07 Score=94.65 Aligned_cols=52 Identities=25% Similarity=0.480 Sum_probs=48.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhhcCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 025407 185 THPRSIAERVRRTRISDRIRKLQDLVPNMD---KQTNTADMLEEAVEYVKFLQKQ 236 (253)
Q Consensus 185 ~~~HsiaERrRRerINer~~~LrsLVP~~~---Kk~DKAsILeeAIdYIk~LQ~q 236 (253)
+.+|+.+|||||+++|.-|.+|.+|||.+. .|+||-+||.+||++||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 456999999999999999999999999987 5699999999999999999885
No 10
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.06 E-value=1.3e-05 Score=72.87 Aligned_cols=60 Identities=23% Similarity=0.407 Sum_probs=49.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhhcCCCCCCC--ChhhHHHHHHHHHHHHHHHHHHHHHH
Q 025407 184 ATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQT--NTADMLEEAVEYVKFLQKQIEELTEH 243 (253)
Q Consensus 184 a~~~HsiaERrRRerINer~~~LrsLVP~~~Kk~--DKAsILeeAIdYIk~LQ~qVk~Le~e 243 (253)
++..|+.-||+||..|++.|..|+.+||...... +.++||+.|+.||+.|+.+.......
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~ 120 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQD 120 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHH
Confidence 3456899999999999999999999999865422 36999999999999999876554433
No 11
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.70 E-value=2.2e-05 Score=69.67 Aligned_cols=58 Identities=22% Similarity=0.403 Sum_probs=50.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhcCC--C-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025407 187 PRSIAERVRRTRISDRIRKLQDLVPN--M-DKQTNTADMLEEAVEYVKFLQKQIEELTEHQ 244 (253)
Q Consensus 187 ~HsiaERrRRerINer~~~LrsLVP~--~-~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~ 244 (253)
.++..||.|=+-||..|..||.+||. . +|++.|..+|..||.||++|++-++.-+...
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 35777999999999999999999996 3 6779999999999999999999887665443
No 12
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.70 E-value=2.6e-05 Score=73.97 Aligned_cols=61 Identities=28% Similarity=0.426 Sum_probs=49.0
Q ss_pred ccccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhhhcCC--CCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 025407 175 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPN--MDKQTNTADMLEEAVEYVKFLQKQIEEL 240 (253)
Q Consensus 175 ~k~r~Kr~~a~~~HsiaERrRRerINer~~~LrsLVP~--~~Kk~DKAsILeeAIdYIk~LQ~qVk~L 240 (253)
..+|-||..+ |-.||||=.-||..|+.||+|+|. +.| +.||.||+.+.+||..|..+.-+|
T Consensus 55 ~erRmRReIA----NsNERRRMQSINAGFqsLr~LlPr~eGEK-LSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 55 PERRMRREIA----NSNERRRMQSINAGFQSLRALLPRKEGEK-LSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHHHHHHhh----cchHHHHHHhhhHHHHHHHHhcCcccchh-hHHHHHHHHHHHHHHHHHhccccc
Confidence 3344555544 456999999999999999999997 445 999999999999999999765433
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.43 E-value=0.00031 Score=55.97 Aligned_cols=51 Identities=27% Similarity=0.605 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhhcCCCCC-----CCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 196 RTRISDRIRKLQDLVPNMDK-----QTNTADMLEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 196 RerINer~~~LrsLVP~~~K-----k~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
-+.|++-+..||.|+|.... +...+-||+||..||+.|+.+|..|.+....
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~ 74 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSE 74 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999996432 2567889999999999999999999887654
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.46 E-value=0.0038 Score=62.77 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhcC---CCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 025407 188 RSIAERVRRTRISDRIRKLQDLVP---NMDKQTNTADMLEEAVEYVKFLQKQIEE 239 (253)
Q Consensus 188 HsiaERrRRerINer~~~LrsLVP---~~~Kk~DKAsILeeAIdYIk~LQ~qVk~ 239 (253)
.++.||.|=..||+.|++|-.+.- ..+|...|.-||..||.-|-.|++||.+
T Consensus 530 NNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 530 NNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred hhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999988764 2444357999999999999999999974
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=92.52 E-value=0.065 Score=47.03 Aligned_cols=49 Identities=24% Similarity=0.534 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhcCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 025407 188 RSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQI 237 (253)
Q Consensus 188 HsiaERrRRerINer~~~LrsLVP~~--~Kk~DKAsILeeAIdYIk~LQ~qV 237 (253)
|++-||+|=..+|+.|..||.++|.. +| +.|.-.|.-|-.||-+|=.-.
T Consensus 82 anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 82 ANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhhcc
Confidence 78999999999999999999999974 45 889999999999999986543
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=89.66 E-value=0.26 Score=51.55 Aligned_cols=44 Identities=20% Similarity=0.429 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhcCCC---CCCCChhhHHHHHHHHHHH
Q 025407 189 SIAERVRRTRISDRIRKLQDLVPNM---DKQTNTADMLEEAVEYVKF 232 (253)
Q Consensus 189 siaERrRRerINer~~~LrsLVP~~---~Kk~DKAsILeeAIdYIk~ 232 (253)
.-|.|.||.|-|+-|.+|..+||-. .-++|||+|+.-||-|++-
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 4468999999999999999999942 2358999999999999874
No 17
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=84.82 E-value=0.99 Score=45.34 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC---CCCCChhhHHHHHHHHHHHH
Q 025407 190 IAERVRRTRISDRIRKLQDLVPNM---DKQTNTADMLEEAVEYVKFL 233 (253)
Q Consensus 190 iaERrRRerINer~~~LrsLVP~~---~Kk~DKAsILeeAIdYIk~L 233 (253)
-+.|.||++-|-.|.+|..++|-. ..++||++|+.-|-.|||.-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 457899999999999999999953 34589999999999999854
No 18
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=82.21 E-value=2 Score=40.59 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhcCCCC--CCCChhhHHHHHHHHHHHHHHHH
Q 025407 188 RSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQI 237 (253)
Q Consensus 188 HsiaERrRRerINer~~~LrsLVP~~~--Kk~DKAsILeeAIdYIk~LQ~qV 237 (253)
-+..||+|=..+|..|..|+.+||..+ +++.|-..|..|-.||--|=...
T Consensus 178 anarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 178 ANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred cchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 366799999999999999999999754 46889999999999999886655
No 19
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=79.60 E-value=1.2 Score=41.09 Aligned_cols=47 Identities=21% Similarity=0.391 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhcCCCC--CCCChhhHHHHHHHHHHHHHH
Q 025407 189 SIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQK 235 (253)
Q Consensus 189 siaERrRRerINer~~~LrsLVP~~~--Kk~DKAsILeeAIdYIk~LQ~ 235 (253)
+.-||.|--.+|+.|+.||.+||... .++.|...|.-|-.||..|++
T Consensus 77 NaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 77 NARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred cchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 45588888899999999999999532 248899999999999999885
No 20
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=79.45 E-value=2.1 Score=44.28 Aligned_cols=40 Identities=20% Similarity=0.446 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCC---CCChhhHHHHHHHHHH
Q 025407 192 ERVRRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVK 231 (253)
Q Consensus 192 ERrRRerINer~~~LrsLVP~~~K---k~DKAsILeeAIdYIk 231 (253)
-+|-|+|+|-.+..|.+|+|-... |+||-+||.-+|-|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 346699999999999999996332 3999999999999986
No 21
>PHA00370 III attachment protein
Probab=72.73 E-value=8.4 Score=36.61 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=26.9
Q ss_pred ccccccccccccccccCCCcccccc--cccCCCCCCCCCCCCCCCCc
Q 025407 75 LSLSQSQLDQVGFQRQNSSPADLFD--GYFSNYATPSSYDYVDVSPN 119 (253)
Q Consensus 75 ~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~s~~d~~~~sp~ 119 (253)
|......|+|+| +-..|.-+.||. +||++++-.-+-..|.+.|.
T Consensus 208 ~~~~~s~md~lg-~g~gS~~~~~l~~~~~~PslP~~n~C~~FV~~~g 253 (297)
T PHA00370 208 FAGSNSEMDQLG-EGDGSPLESFLNDGALRPSLPEGHGCTPFVFAQG 253 (297)
T ss_pred ccCchhhhhhhc-ccCCcHHHHhhcccccccCCCCCCCCCcceeecc
Confidence 333344677777 555666677874 78888765544444555554
No 22
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=71.18 E-value=3.2 Score=43.99 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=47.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhcCCCCCC----CChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025407 186 HPRSIAERVRRTRISDRIRKLQDLVPNMDKQ----TNTADMLEEAVEYVKFLQKQIEELTEHQ 244 (253)
Q Consensus 186 ~~HsiaERrRRerINer~~~LrsLVP~~~Kk----~DKAsILeeAIdYIk~LQ~qVk~Le~e~ 244 (253)
-.|+-+|.+||..|+-.+..|-.++-+..+. |.++.-+..+++||..++.+...+.+|.
T Consensus 653 it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 653 ITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred ccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 3489999999999999999999999876553 5566679999999998887765555443
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.94 E-value=19 Score=28.27 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025407 222 MLEEAVEYVKFLQKQIEELTEHQRRC 247 (253)
Q Consensus 222 ILeeAIdYIk~LQ~qVk~Le~e~~k~ 247 (253)
-+..|||-|.-||.+|.+|++++...
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l 37 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 35679999999999999998877643
No 24
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=46.28 E-value=35 Score=31.90 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhcCCCCC
Q 025407 197 TRISDRIRKLQDLVPNMDK 215 (253)
Q Consensus 197 erINer~~~LrsLVP~~~K 215 (253)
++..+||++|++|.|+...
T Consensus 116 ~ra~eRl~~LqalYp~v~v 134 (241)
T PF09321_consen 116 ERAQERLRELQALYPEVSV 134 (241)
T ss_pred HHHHHHHHHHHHhCCCCch
Confidence 4567899999999998654
No 25
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=45.37 E-value=31 Score=27.25 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 222 MLEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 222 ILeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
-+..|||-|.-||.+|.+|++++..
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~ 36 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999887654
No 26
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=42.83 E-value=40 Score=25.74 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 025407 223 LEEAVEYVKFLQKQIEELTEHQR 245 (253)
Q Consensus 223 LeeAIdYIk~LQ~qVk~Le~e~~ 245 (253)
+..||+-|.-||.+|.+|++++.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999999999988644
No 27
>PRK13702 replication protein; Provisional
Probab=42.17 E-value=54 Score=26.27 Aligned_cols=43 Identities=28% Similarity=0.391 Sum_probs=30.2
Q ss_pred CCCcHHHHHHH--HHHHHHHHHHhhhcCCCCC----------CCChhhHHHHHHH
Q 025407 186 HPRSIAERVRR--TRISDRIRKLQDLVPNMDK----------QTNTADMLEEAVE 228 (253)
Q Consensus 186 ~~HsiaERrRR--erINer~~~LrsLVP~~~K----------k~DKAsILeeAId 228 (253)
.|++.+||.|. -|..+--++|.-+||+.-| .+..|.||+..|+
T Consensus 22 ~Pls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 22 NPLSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 67999999883 4555666788888887433 2457777777665
No 28
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.44 E-value=1e+02 Score=22.33 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 025407 193 RVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELT 241 (253)
Q Consensus 193 RrRRerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le 241 (253)
|.-|=.....++.+..++--.. .++|++||+.+-++++.+.
T Consensus 17 R~~RHD~~NhLqvI~gllqlg~--------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLGK--------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHH
Confidence 3335556666888888774332 4778999999999988773
No 29
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=34.67 E-value=29 Score=30.19 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHH
Q 025407 197 TRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFL 233 (253)
Q Consensus 197 erINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~L 233 (253)
+-|-+||.+|++|||.... .--.++..-+..++|.+
T Consensus 49 ETl~ERi~ALkDm~Pp~~R-~~i~~~~s~t~s~~ks~ 84 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPTTR-GWIYHKYSTTTNFVKST 84 (145)
T ss_pred CcHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 3567789999999997554 23334444444444443
No 30
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=31.86 E-value=43 Score=30.91 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=7.1
Q ss_pred CCCCCCCCcccccc
Q 025407 20 GGRGELSRGGLARL 33 (253)
Q Consensus 20 ~g~~~~~~~~l~r~ 33 (253)
|||+++-+++.+|.
T Consensus 100 Ggg~gg~rgppsrr 113 (241)
T KOG0105|consen 100 GGGGGGRRGPPSRR 113 (241)
T ss_pred CCCCCcccCCcccc
Confidence 44444455555554
No 31
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=31.85 E-value=1.6e+02 Score=28.03 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=28.7
Q ss_pred C-cHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 188 R-SIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 188 H-siaERrRRerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
| ++-|+.-|.|++.|+.+=-+ -++ |-.-.++-=+-|+.|.++.+.|..++..
T Consensus 63 HLS~EEK~~RrKLKNRVAAQta----RDr---KKaRm~eme~~i~dL~een~~L~~en~~ 115 (292)
T KOG4005|consen 63 HLSWEEKVQRRKLKNRVAAQTA----RDR---KKARMEEMEYEIKDLTEENEILQNENDS 115 (292)
T ss_pred ccCHHHHHHHHHHHHHHHHhhh----hhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 67788888888888765321 111 2222333333356666666666555443
No 32
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=31.62 E-value=35 Score=30.33 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCC
Q 025407 191 AERVRRTRISDRIRKLQDLVPNMD 214 (253)
Q Consensus 191 aERrRRerINer~~~LrsLVP~~~ 214 (253)
.|+.|..++++.+.-|+.|+|++.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgsp 52 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSP 52 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCC
Confidence 488999999999999999999865
No 33
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=30.11 E-value=91 Score=32.30 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 025407 188 RSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELTEHQRRCKC 249 (253)
Q Consensus 188 HsiaERrRRerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k~~c 249 (253)
+.++|..=+..|......|+.|.|-|.. | .++.+-|+.|++++..|..-..+-.|
T Consensus 222 RdlaEeNl~kEi~~~~~~l~~l~~lc~~--d-----~e~~e~~~kl~~~l~~l~~~~~rvss 276 (538)
T PF05781_consen 222 RDLAEENLKKEIENCLKLLESLAPLCWE--D-----NESREIIQKLQKSLDVLHQCATRVSS 276 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchh--h-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566776688888888999999998775 2 44666667777777666655554443
No 34
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.68 E-value=1.1e+02 Score=29.42 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHH
Q 025407 218 NTADMLEEAVEYVKFLQKQIEE 239 (253)
Q Consensus 218 DKAsILeeAIdYIk~LQ~qVk~ 239 (253)
+.|+=|+.=|+|+|.|-.++.+
T Consensus 269 ~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 269 DQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999998777654
No 35
>PRK11020 hypothetical protein; Provisional
Probab=27.58 E-value=1.2e+02 Score=25.63 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 196 RerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
=.++|+++..++.=++.... .+.+.|+.+--+-|..|.+++..|...+..
T Consensus 7 iq~L~drLD~~~~Klaaa~~-rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~ 56 (118)
T PRK11020 7 IKRLSDRLDAIRHKLAAASL-RGDAEKYAQFEKEKATLEAEIARLKEVQSQ 56 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888887776666 466777777777788888887777655443
No 36
>PLN03106 TCP2 Protein TCP2; Provisional
Probab=26.57 E-value=51 Score=32.95 Aligned_cols=47 Identities=34% Similarity=0.503 Sum_probs=25.3
Q ss_pred CCCCCcchhhcccCC-CCCccccCccccccccccccccccCCCccccc
Q 025407 52 PLKPNQCLTQLLSSG-DPVSVTAGLSLSQSQLDQVGFQRQNSSPADLF 98 (253)
Q Consensus 52 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 98 (253)
|+-.+-++|+||+++ +.+.+.........-=++.-+.|+..+|.||+
T Consensus 238 pIsqnSSFTeLLTGGi~~~~nN~~~~a~spsg~~~~~r~~~tspmdyf 285 (447)
T PLN03106 238 PISQNSSFTELLTGGIDPVNNNRQWMASAPSGQKAAAARQWPSPMDYF 285 (447)
T ss_pred CCcCCccHHHHHhcCCCcCcccccccccCCCccccccccCCCChHHhh
Confidence 455677999999999 44433222111000001112357888888755
No 37
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=26.33 E-value=24 Score=37.80 Aligned_cols=55 Identities=20% Similarity=0.197 Sum_probs=45.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 025407 186 HPRSIAERVRRTRISDRIRKLQDLVPNMD----KQTNTADMLEEAVEYVKFLQKQIEELTEH 243 (253)
Q Consensus 186 ~~HsiaERrRRerINer~~~LrsLVP~~~----Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e 243 (253)
..|..++|++|-.|.++++.|-+|.|... +.+.+++||. |.|+.+|+.-+.+.+.
T Consensus 789 a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~ 847 (856)
T KOG3582|consen 789 AGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEK 847 (856)
T ss_pred cchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhh
Confidence 35677899999999999999999999643 3478999998 8999999887777663
No 38
>smart00338 BRLZ basic region leucin zipper.
Probab=25.92 E-value=83 Score=22.57 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 025407 229 YVKFLQKQIEELTEH 243 (253)
Q Consensus 229 YIk~LQ~qVk~Le~e 243 (253)
||..|+.+|+.|+.+
T Consensus 27 ~~~~Le~~~~~L~~e 41 (65)
T smart00338 27 EIEELERKVEQLEAE 41 (65)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 39
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=25.78 E-value=2.4e+02 Score=21.08 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 191 AERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 191 aERrRRerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
+|-+.+..|.+.+...++- ......-|.+|=...+.|+.+|+.|+.+...
T Consensus 8 ~EirakQ~~~eEL~kvk~~------n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 8 AEIRAKQAIQEELTKVKSA------NLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888776651 1357778999999999999999999988754
No 40
>PHA00370 III attachment protein
Probab=25.01 E-value=67 Score=30.74 Aligned_cols=9 Identities=44% Similarity=0.545 Sum_probs=4.3
Q ss_pred HHHHhhhcc
Q 025407 42 DALLEEELE 50 (253)
Q Consensus 42 ~~l~~~~~~ 50 (253)
++|+|+++.
T Consensus 157 daltE~~d~ 165 (297)
T PHA00370 157 DALTEDNDQ 165 (297)
T ss_pred hhhcccccc
Confidence 455554444
No 41
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=24.27 E-value=3.6e+02 Score=22.88 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCChhhH--HHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 192 ERVRRTRISDRIRKLQDLVPNMDKQTNTADM--LEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 192 ERrRRerINer~~~LrsLVP~~~Kk~DKAsI--LeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
.+..|+++......|+.=...... .+.+ .+.+++++..|+..|+.|+.....
T Consensus 117 ~k~~r~k~~~~~~~l~~~~~~~~~---P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~ 170 (177)
T PF13870_consen 117 VKKERDKLRKQNKKLRQQGGLLGV---PALLRDYDKTKEEVEELRKEIKELERKVEI 170 (177)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666654333222 2222 567899999999999999876543
No 42
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=24.21 E-value=72 Score=32.99 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=10.0
Q ss_pred ChhhHHHHHHHHHHHHHHHH
Q 025407 218 NTADMLEEAVEYVKFLQKQI 237 (253)
Q Consensus 218 DKAsILeeAIdYIk~LQ~qV 237 (253)
|.+.+|..|||-++.-++||
T Consensus 507 niq~llkva~dnar~qekQi 526 (641)
T KOG3915|consen 507 NIQGLLKVAIDNARAQEKQI 526 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444433
No 43
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=23.83 E-value=57 Score=27.93 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhhcCCCC
Q 025407 197 TRISDRIRKLQDLVPNMD 214 (253)
Q Consensus 197 erINer~~~LrsLVP~~~ 214 (253)
+-|-+||.+|++|||...
T Consensus 51 ETl~ERl~aLkdi~P~~~ 68 (137)
T PF04281_consen 51 ETLLERLWALKDIFPPSV 68 (137)
T ss_pred ccHHHHHHHHhccCCHHH
Confidence 345667999999999744
No 44
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=22.82 E-value=91 Score=20.87 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 025407 193 RVRRTRISDRIRKLQD 208 (253)
Q Consensus 193 RrRRerINer~~~Lrs 208 (253)
|+||+.++.++..||+
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5788899999998875
No 45
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.75 E-value=1e+02 Score=22.10 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 025407 190 IAERVRRTRISDRIRKLQD 208 (253)
Q Consensus 190 iaERrRRerINer~~~Lrs 208 (253)
+|-++=|.|-...+..|..
T Consensus 15 ~AAr~~R~RKk~~~~~Le~ 33 (64)
T PF00170_consen 15 EAARRSRQRKKQYIEELEE 33 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 4555556666667777765
No 46
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=21.75 E-value=57 Score=30.79 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=7.8
Q ss_pred cccCChHHHHHHHh
Q 025407 33 LRSAPASWIDALLE 46 (253)
Q Consensus 33 ~~s~pa~~l~~l~~ 46 (253)
.+.+-|.|+..++-
T Consensus 65 ls~s~aaef~d~l~ 78 (263)
T KOG3074|consen 65 LSLSVAAEFRDILN 78 (263)
T ss_pred EehhhHHHHHHHHH
Confidence 34556666655554
No 47
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=21.03 E-value=1.5e+02 Score=26.26 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 192 ERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 192 ERrRRerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
+-.--..|..++..|+..++...+ +.+.....=++|+.+.+.++++++..++
T Consensus 109 ~l~~L~e~snki~kLe~~~k~L~d---~Iv~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 109 LLPTLEEISNKIRKLETEVKKLKD---NIVTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhh---hccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556677788888888887766 3677777888999999999988877654
No 48
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=20.86 E-value=96 Score=30.69 Aligned_cols=21 Identities=10% Similarity=0.011 Sum_probs=16.0
Q ss_pred ccccccCChHHHHHHHhhhcc
Q 025407 30 LARLRSAPASWIDALLEEELE 50 (253)
Q Consensus 30 l~r~~s~pa~~l~~l~~~~~~ 50 (253)
.-.|--+...+++-|.+|=+=
T Consensus 109 ~fe~e~s~eE~~~~lfEdLeL 129 (371)
T TIGR02877 109 YYETEVTLEELFELLFEDLEL 129 (371)
T ss_pred eEEEEecHHHHHHHHHhhccC
Confidence 567888999999988875443
No 49
>PHA03011 hypothetical protein; Provisional
Probab=20.85 E-value=1.2e+02 Score=25.45 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025407 197 TRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELTEHQRRC 247 (253)
Q Consensus 197 erINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k~ 247 (253)
-+-|+-+++-+-++-. .| |-.-++++-.+.|++|..|+.+|++.....
T Consensus 71 ~qYN~L~dEYn~i~Ne-~k--~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 71 AQYNELLDEYNLIENE-IK--DLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHH-HH--HHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 3445544444444432 22 677899999999999999999999887654
No 50
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=20.47 E-value=2.4e+02 Score=26.84 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCChhhHHHHH
Q 025407 192 ERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEA 226 (253)
Q Consensus 192 ERrRRerINer~~~LrsLVP~~~Kk~DKAsILeeA 226 (253)
=|.||.+|.++|..|+.-=|.. .|...|+.-
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s----~kl~~LeqE 173 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQS----PKLVVLEQE 173 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTT----TTHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhcCCCC----hHHHHHHHH
Confidence 5788999999999998866643 344555444
No 51
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=20.31 E-value=1.1e+02 Score=30.66 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 220 ADMLEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 220 AsILeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
..-+.+-|+|++.|++.+++++..++|
T Consensus 138 ~~r~n~l~eY~q~Laek~Ek~e~drkK 164 (449)
T KOG3896|consen 138 VNRLNELTEYMQRLAEKIEKAEKDRKK 164 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhc
Confidence 445788999999999999999988777
No 52
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.25 E-value=1.3e+02 Score=18.74 Aligned_cols=19 Identities=21% Similarity=0.566 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 025407 230 VKFLQKQIEELTEHQRRCK 248 (253)
Q Consensus 230 Ik~LQ~qVk~Le~e~~k~~ 248 (253)
|..|+.+|..|+.+...|.
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5677888888888877764
Done!