Query 025407
Match_columns 253
No_of_seqs 172 out of 841
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 09:39:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 4.8E-18 1.6E-22 129.1 4.2 65 185-249 7-71 (82)
2 4ati_A MITF, microphthalmia-as 99.7 2.1E-17 7.1E-22 133.5 7.6 74 173-246 16-92 (118)
3 4h10_B Circadian locomoter out 99.6 3.3E-16 1.1E-20 117.5 3.5 57 185-241 9-65 (71)
4 1a0a_A BHLH, protein (phosphat 99.6 3.5E-16 1.2E-20 114.2 2.8 54 185-238 3-62 (63)
5 1an4_A Protein (upstream stimu 99.6 4.4E-16 1.5E-20 112.8 3.0 55 184-238 5-64 (65)
6 1hlo_A Protein (transcription 99.6 5.1E-15 1.8E-19 111.3 6.7 64 186-249 14-78 (80)
7 1nkp_B MAX protein, MYC proto- 99.5 8.9E-15 3.1E-19 110.4 7.2 61 187-247 5-66 (83)
8 4h10_A ARYL hydrocarbon recept 99.5 1.2E-15 4.2E-20 114.6 0.9 53 183-235 8-63 (73)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 3.1E-14 1.1E-18 109.7 7.2 60 187-246 9-70 (88)
10 3u5v_A Protein MAX, transcript 99.4 8.1E-14 2.8E-18 105.3 4.9 57 186-242 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.4 9.3E-13 3.2E-17 100.0 7.4 61 187-247 4-66 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.2 5.9E-12 2E-16 93.3 2.3 52 186-237 14-66 (68)
13 4f3l_A Mclock, circadian locom 99.1 7.3E-11 2.5E-15 107.0 6.1 54 184-237 12-65 (361)
14 2ql2_B Neurod1, neurogenic dif 99.1 1.4E-10 4.7E-15 83.9 5.7 51 188-238 6-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 2.3E-10 8E-15 105.1 3.0 52 184-236 13-68 (387)
16 4ath_A MITF, microphthalmia-as 98.9 3.8E-09 1.3E-13 81.5 6.8 51 196-246 4-57 (83)
17 2lfh_A DNA-binding protein inh 98.6 9.2E-09 3.2E-13 76.8 1.9 46 190-235 20-67 (68)
18 4aya_A DNA-binding protein inh 98.2 2.6E-06 8.7E-11 67.4 7.0 49 192-240 33-83 (97)
19 2pk2_A Cyclin-T1, protein TAT; 92.3 0.025 8.6E-07 52.2 0.0 8 30-37 309-316 (358)
20 2wt7_A Proto-oncogene protein 62.9 18 0.00062 25.4 5.7 17 192-208 1-17 (63)
21 2jee_A YIIU; FTSZ, septum, coi 57.9 10 0.00035 28.9 3.8 26 222-247 14-39 (81)
22 1p3q_Q VPS9P, vacuolar protein 52.2 21 0.00071 25.2 4.4 26 190-215 3-28 (54)
23 3muj_A Transcription factor CO 44.6 31 0.001 28.6 4.9 36 198-233 95-133 (138)
24 3ng9_A Capsid protein; beta ba 43.3 7.8 0.00027 39.7 1.4 11 36-47 293-303 (736)
25 3ntt_A Capsid protein; gene th 42.9 7.4 0.00025 39.8 1.1 13 36-49 283-295 (724)
26 3p8c_D Wiskott-aldrich syndrom 42.3 5.3 0.00018 36.4 0.0 19 22-40 196-214 (279)
27 1zme_C Proline utilization tra 41.1 20 0.00069 24.4 2.9 19 228-246 44-62 (70)
28 2l5g_A GPS2 protein, G protein 39.9 46 0.0016 22.1 4.2 29 216-244 3-31 (38)
29 1f1f_A Cytochrome C6; heme, pr 38.8 64 0.0022 21.8 5.3 40 196-236 48-87 (89)
30 1dh3_A Transcription factor CR 38.4 24 0.00082 24.4 2.9 19 228-246 22-40 (55)
31 3fx7_A Putative uncharacterize 36.9 88 0.003 24.2 6.2 24 222-245 64-87 (94)
32 3w03_C DNA repair protein XRCC 34.7 24 0.00082 30.3 2.9 31 219-249 143-173 (184)
33 3ph2_B Cytochrome C6; photosyn 32.1 97 0.0033 20.7 5.3 38 198-236 47-84 (86)
34 2ke4_A CDC42-interacting prote 31.8 97 0.0033 23.8 5.7 32 211-242 52-83 (98)
35 1cyi_A Cytochrome C6, cytochro 30.8 1E+02 0.0035 20.9 5.3 38 197-235 47-84 (90)
36 1gdv_A Cytochrome C6; RED ALGA 30.6 1.1E+02 0.0036 20.4 5.3 36 199-235 47-82 (85)
37 2wuj_A Septum site-determining 30.4 61 0.0021 22.4 3.9 30 219-248 25-54 (57)
38 2er8_A Regulatory protein Leu3 29.3 41 0.0014 23.0 3.0 19 228-246 49-67 (72)
39 1c6r_A Cytochrome C6; electron 28.7 1.1E+02 0.0037 20.7 5.1 38 197-235 48-85 (89)
40 1gd2_E Transcription factor PA 27.6 47 0.0016 24.3 3.0 13 196-208 24-36 (70)
41 1xkm_B Distinctin chain B; por 26.4 87 0.003 18.9 3.5 19 220-238 3-21 (26)
42 1m2x_A Class B carbapenemase B 25.9 22 0.00074 28.7 1.1 31 208-239 191-221 (223)
43 3he4_B Synzip5; heterodimeric 25.4 81 0.0028 21.2 3.6 21 223-243 5-25 (46)
44 1hwt_C Protein (heme activator 24.7 34 0.0012 23.9 1.8 21 227-247 57-77 (81)
45 2jqq_A Conserved oligomeric go 24.7 56 0.0019 28.6 3.5 43 196-240 53-95 (204)
46 2dgc_A Protein (GCN4); basic d 24.3 56 0.0019 23.1 2.9 17 191-207 20-36 (63)
47 1a7t_A Metallo-beta-lactamase; 23.0 56 0.0019 26.5 3.1 32 207-239 200-231 (232)
48 1ls9_A Cytochrome C6; omega lo 22.9 1.6E+02 0.0054 20.0 5.1 38 197-235 50-87 (91)
49 1jnm_A Proto-oncogene C-JUN; B 22.6 65 0.0022 22.3 2.9 14 233-246 41-54 (62)
50 3dmi_A Cytochrome C6; electron 22.3 1.5E+02 0.005 19.9 4.7 38 197-235 47-84 (88)
51 3dr0_A Cytochrome C6; photosyn 21.4 1.4E+02 0.0046 20.1 4.4 37 198-235 53-89 (93)
52 2fhx_A SPM-1; metallo-beta-lac 20.3 55 0.0019 26.4 2.5 30 208-238 216-245 (246)
53 2lf0_A Uncharacterized protein 20.0 2.3E+02 0.0079 23.0 6.0 54 192-246 8-61 (123)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.70 E-value=4.8e-18 Score=129.08 Aligned_cols=65 Identities=26% Similarity=0.488 Sum_probs=59.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 025407 185 THPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELTEHQRRCKC 249 (253)
Q Consensus 185 ~~~HsiaERrRRerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k~~c 249 (253)
..+|+++||+||++||++|.+|++|||++..++||++||.+||+||++||.+++.|+.++.....
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999998666999999999999999999999999998876543
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.70 E-value=2.1e-17 Score=133.48 Aligned_cols=74 Identities=28% Similarity=0.487 Sum_probs=52.7
Q ss_pred CCccccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhhhcCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 173 VPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 173 v~~k~r~Kr~~a~~~HsiaERrRRerINer~~~LrsLVP~~~K---k~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
...+...|++.++.+|+++||+||++||++|.+|++|||.+.+ +++|++||++||+||++||.+++.|+++..+
T Consensus 16 ~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 16 SEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred chHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788899999999999999999999999998853 4899999999999999999999999876433
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.60 E-value=3.3e-16 Score=117.48 Aligned_cols=57 Identities=16% Similarity=0.371 Sum_probs=51.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 025407 185 THPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELT 241 (253)
Q Consensus 185 ~~~HsiaERrRRerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le 241 (253)
..+|+++||+||++||++|.+|++|||....++||++||+.||+||+.||.++.=|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 346999999999999999999999999876569999999999999999999987664
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.59 E-value=3.5e-16 Score=114.18 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=48.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhhcCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 025407 185 THPRSIAERVRRTRISDRIRKLQDLVPNMDK------QTNTADMLEEAVEYVKFLQKQIE 238 (253)
Q Consensus 185 ~~~HsiaERrRRerINer~~~LrsLVP~~~K------k~DKAsILeeAIdYIk~LQ~qVk 238 (253)
..+|+++||+||++||..|..|++|||.+.+ +++||+||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999999999999997633 36799999999999999998764
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=4.4e-16 Score=112.75 Aligned_cols=55 Identities=22% Similarity=0.416 Sum_probs=49.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhhcCCCCC-----CCChhhHHHHHHHHHHHHHHHHH
Q 025407 184 ATHPRSIAERVRRTRISDRIRKLQDLVPNMDK-----QTNTADMLEEAVEYVKFLQKQIE 238 (253)
Q Consensus 184 a~~~HsiaERrRRerINer~~~LrsLVP~~~K-----k~DKAsILeeAIdYIk~LQ~qVk 238 (253)
....|+++||+||++||+.|..|++|||.+.. ++||++||++||+||++||++++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 44679999999999999999999999998873 48999999999999999998753
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=5.1e-15 Score=111.35 Aligned_cols=64 Identities=25% Similarity=0.483 Sum_probs=57.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 025407 186 HPRSIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIEELTEHQRRCKC 249 (253)
Q Consensus 186 ~~HsiaERrRRerINer~~~LrsLVP~~~-Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k~~c 249 (253)
..|+.+||+||..||+.|..|+++||.+. .+++|++||..||+||+.||.+++.|+.+......
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34999999999999999999999999873 24999999999999999999999999998876553
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.54 E-value=8.9e-15 Score=110.40 Aligned_cols=61 Identities=25% Similarity=0.501 Sum_probs=54.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhcCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025407 187 PRSIAERVRRTRISDRIRKLQDLVPNM-DKQTNTADMLEEAVEYVKFLQKQIEELTEHQRRC 247 (253)
Q Consensus 187 ~HsiaERrRRerINer~~~LrsLVP~~-~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k~ 247 (253)
.|+..||+||+.||+.|..|+++||.+ ..+++|++||..||+||+.||.+++.|+.+....
T Consensus 5 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999985 2349999999999999999999999988776654
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.52 E-value=1.2e-15 Score=114.55 Aligned_cols=53 Identities=28% Similarity=0.407 Sum_probs=47.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhhhcCCCC---CCCChhhHHHHHHHHHHHHHH
Q 025407 183 CATHPRSIAERVRRTRISDRIRKLQDLVPNMD---KQTNTADMLEEAVEYVKFLQK 235 (253)
Q Consensus 183 ~a~~~HsiaERrRRerINer~~~LrsLVP~~~---Kk~DKAsILeeAIdYIk~LQ~ 235 (253)
+++.+|+++||+||++||+.|.+|++|||.+. .++|||+||+.||+||+.||.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 33456999999999999999999999999873 349999999999999999974
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=3.1e-14 Score=109.70 Aligned_cols=60 Identities=20% Similarity=0.403 Sum_probs=53.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 187 PRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 187 ~HsiaERrRRerINer~~~LrsLVP~~~--Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
.|++.||+||+.||+.|..|+++||.+. .+++|++||.+||+||++||.+++.|..+...
T Consensus 9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999864 35999999999999999999998887765443
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.43 E-value=8.1e-14 Score=105.27 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhcCC---CCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 025407 186 HPRSIAERVRRTRISDRIRKLQDLVPN---MDKQTNTADMLEEAVEYVKFLQKQIEELTE 242 (253)
Q Consensus 186 ~~HsiaERrRRerINer~~~LrsLVP~---~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~ 242 (253)
..|+..||+||+.||+.|..|+.+||. .+|.++|+.||..||+||++||+++++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 459999999999999999999999995 344347999999999999999999998753
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=9.3e-13 Score=100.05 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=54.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025407 187 PRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEELTEHQRRC 247 (253)
Q Consensus 187 ~HsiaERrRRerINer~~~LrsLVP~~~--Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k~ 247 (253)
.|+..||+||..||+.|..|+++||.+. .+++|++||..||+||+.||.+.+.|..+....
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999653 248999999999999999999999988776653
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.18 E-value=5.9e-12 Score=93.33 Aligned_cols=52 Identities=17% Similarity=0.389 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhcCCC-CCCCChhhHHHHHHHHHHHHHHHH
Q 025407 186 HPRSIAERVRRTRISDRIRKLQDLVPNM-DKQTNTADMLEEAVEYVKFLQKQI 237 (253)
Q Consensus 186 ~~HsiaERrRRerINer~~~LrsLVP~~-~Kk~DKAsILeeAIdYIk~LQ~qV 237 (253)
..|+..||+|+..||+.|..|+++||.. +++++|+.||..||+||.+||+.+
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999964 346999999999999999999865
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.10 E-value=7.3e-11 Score=106.98 Aligned_cols=54 Identities=15% Similarity=0.403 Sum_probs=42.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 025407 184 ATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQI 237 (253)
Q Consensus 184 a~~~HsiaERrRRerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qV 237 (253)
+..+|+++||+||++||+.|.+|++|||....++||++||..||+||+.|+...
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 345699999999999999999999999955555999999999999999998653
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.08 E-value=1.4e-10 Score=83.94 Aligned_cols=51 Identities=20% Similarity=0.319 Sum_probs=46.6
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhcCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 025407 188 RSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIE 238 (253)
Q Consensus 188 HsiaERrRRerINer~~~LrsLVP~~--~Kk~DKAsILeeAIdYIk~LQ~qVk 238 (253)
|+..||+|+..||+.|..|+.+||.. +++++|..+|..||+||..||+.++
T Consensus 6 ~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 6 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 78889999999999999999999975 4569999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.94 E-value=2.3e-10 Score=105.15 Aligned_cols=52 Identities=31% Similarity=0.400 Sum_probs=46.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhhcCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 025407 184 ATHPRSIAERVRRTRISDRIRKLQDLVPN----MDKQTNTADMLEEAVEYVKFLQKQ 236 (253)
Q Consensus 184 a~~~HsiaERrRRerINer~~~LrsLVP~----~~Kk~DKAsILeeAIdYIk~LQ~q 236 (253)
++.+|+.+||+||++||+.|.+|+.|||. ..| +||++||..||+|||.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhcc
Confidence 34569999999999999999999999994 445 99999999999999999854
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.87 E-value=3.8e-09 Score=81.52 Aligned_cols=51 Identities=29% Similarity=0.589 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhhcCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 196 RTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 196 RerINer~~~LrsLVP~~~K---k~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
|..||++|.+|..|||.+.. +++|++||..||+||++||++++.+.++..+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999997532 4799999999999999999988777655543
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.62 E-value=9.2e-09 Score=76.77 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC--CCCCChhhHHHHHHHHHHHHHH
Q 025407 190 IAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQK 235 (253)
Q Consensus 190 iaERrRRerINer~~~LrsLVP~~--~Kk~DKAsILeeAIdYIk~LQ~ 235 (253)
..||+|...||+.|..||.+||.. +++++|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 348888999999999999999975 4469999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.22 E-value=2.6e-06 Score=67.39 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC--CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 025407 192 ERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIEEL 240 (253)
Q Consensus 192 ERrRRerINer~~~LrsLVP~~--~Kk~DKAsILeeAIdYIk~LQ~qVk~L 240 (253)
||.|=..||+.|..||.+||.. ++++.|..+|..||+||..||+.++.-
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 5778888999999999999974 557999999999999999999987653
No 19
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=92.28 E-value=0.025 Score=52.15 Aligned_cols=8 Identities=13% Similarity=0.214 Sum_probs=0.0
Q ss_pred ccccccCC
Q 025407 30 LARLRSAP 37 (253)
Q Consensus 30 l~r~~s~p 37 (253)
..++...|
T Consensus 309 ~~~~~~~~ 316 (358)
T 2pk2_A 309 TGGQEARP 316 (358)
T ss_dssp --------
T ss_pred CCCCCCcc
Confidence 44444444
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=62.92 E-value=18 Score=25.42 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 025407 192 ERVRRTRISDRIRKLQD 208 (253)
Q Consensus 192 ERrRRerINer~~~Lrs 208 (253)
|+++|.+...++.+.+.
T Consensus 1 Ekr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC 17 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH
Confidence 34555555555555544
No 21
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=57.94 E-value=10 Score=28.88 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025407 222 MLEEAVEYVKFLQKQIEELTEHQRRC 247 (253)
Q Consensus 222 ILeeAIdYIk~LQ~qVk~Le~e~~k~ 247 (253)
=++.||+-|.-||.+|++|++++..+
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999887664
No 22
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=52.17 E-value=21 Score=25.17 Aligned_cols=26 Identities=23% Similarity=0.592 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCC
Q 025407 190 IAERVRRTRISDRIRKLQDLVPNMDK 215 (253)
Q Consensus 190 iaERrRRerINer~~~LrsLVP~~~K 215 (253)
.++|.+|...++-+..|+.+.|+.++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 46888899999999999999998776
No 23
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=44.60 E-value=31 Score=28.62 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhcCCC---CCCCChhhHHHHHHHHHHHH
Q 025407 198 RISDRIRKLQDLVPNM---DKQTNTADMLEEAVEYVKFL 233 (253)
Q Consensus 198 rINer~~~LrsLVP~~---~Kk~DKAsILeeAIdYIk~L 233 (253)
-|.=.|+.|+.+||.- ..++-|..||..|-|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4677899999999852 33588999999999999876
No 24
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=43.31 E-value=7.8 Score=39.69 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=5.6
Q ss_pred CChHHHHHHHhh
Q 025407 36 APASWIDALLEE 47 (253)
Q Consensus 36 ~pa~~l~~l~~~ 47 (253)
+|-.|= .|+.+
T Consensus 293 SP~DwQ-~Lin~ 303 (736)
T 3ng9_A 293 SPRDWQ-RLINN 303 (736)
T ss_dssp CHHHHH-HHHHH
T ss_pred CHHHHH-HHHHh
Confidence 466664 34443
No 25
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}
Probab=42.86 E-value=7.4 Score=39.82 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=6.7
Q ss_pred CChHHHHHHHhhhc
Q 025407 36 APASWIDALLEEEL 49 (253)
Q Consensus 36 ~pa~~l~~l~~~~~ 49 (253)
+|-.|= .|+++..
T Consensus 283 SP~DwQ-~Lin~y~ 295 (724)
T 3ntt_A 283 SPRDWQ-RLINNYW 295 (724)
T ss_dssp CHHHHH-HHHHHEE
T ss_pred CHHHHH-HHHHhhc
Confidence 567774 3444333
No 26
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=42.31 E-value=5.3 Score=36.45 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=0.0
Q ss_pred CCCCCCccccccccCChHH
Q 025407 22 RGELSRGGLARLRSAPASW 40 (253)
Q Consensus 22 ~~~~~~~~l~r~~s~pa~~ 40 (253)
||.+..+|+.+..|+|.-.
T Consensus 196 ~~~~~~~~~~~~~~~~p~~ 214 (279)
T 3p8c_D 196 GGSGGSGGSKRHPSTLPVI 214 (279)
T ss_dssp -------------------
T ss_pred CCCCCCCccccCCCCCCCc
Confidence 3444456888888887643
No 27
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=41.06 E-value=20 Score=24.38 Aligned_cols=19 Identities=37% Similarity=0.650 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 025407 228 EYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 228 dYIk~LQ~qVk~Le~e~~k 246 (253)
.||..|+.+|+.|+.....
T Consensus 44 ~~~~~L~~ri~~Le~~l~~ 62 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655544
No 28
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=39.88 E-value=46 Score=22.08 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025407 216 QTNTADMLEEAVEYVKFLQKQIEELTEHQ 244 (253)
Q Consensus 216 k~DKAsILeeAIdYIk~LQ~qVk~Le~e~ 244 (253)
.|..+..|+++-+-|..|+.+++.|+++.
T Consensus 3 e~ee~mTLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 3 EMEERMSLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678889999999999999999998775
No 29
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=38.80 E-value=64 Score=21.83 Aligned_cols=40 Identities=10% Similarity=0.261 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHH
Q 025407 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQ 236 (253)
Q Consensus 196 RerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~q 236 (253)
++.|.+.+..-...+|.....++... +...|.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQ-IEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHH-HHHHHHHHHHHhhc
Confidence 34455555544567887765466555 57899999998753
No 30
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=38.35 E-value=24 Score=24.40 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 025407 228 EYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 228 dYIk~LQ~qVk~Le~e~~k 246 (253)
.||..|+.+|..|+.++..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~ 40 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKT 40 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5777777777777666554
No 31
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=36.90 E-value=88 Score=24.25 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 025407 222 MLEEAVEYVKFLQKQIEELTEHQR 245 (253)
Q Consensus 222 ILeeAIdYIk~LQ~qVk~Le~e~~ 245 (253)
..+.|=+||.+|.++|+.|++.+-
T Consensus 64 f~e~a~e~vp~L~~~i~vle~~~~ 87 (94)
T 3fx7_A 64 FDEAAQEQIAWLKERIRVLEEDYL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHhHHHHHHHHHhHHHHH
Confidence 345788999999999999998764
No 32
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=34.73 E-value=24 Score=30.34 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 025407 219 TADMLEEAVEYVKFLQKQIEELTEHQRRCKC 249 (253)
Q Consensus 219 KAsILeeAIdYIk~LQ~qVk~Le~e~~k~~c 249 (253)
...||+-+++-|..|+.+++.|++++.+..+
T Consensus 143 i~elid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 143 IRELICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677777789999999999999888653
No 33
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=32.05 E-value=97 Score=20.65 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHH
Q 025407 198 RISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQ 236 (253)
Q Consensus 198 rINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~q 236 (253)
.|...|..-+..+|.....++... +...+.||..|..+
T Consensus 47 ~~~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 84 (86)
T 3ph2_B 47 AITTVVTNGKAGMPAFKGRLTDDQ-IAAVAAYVLDQAEK 84 (86)
T ss_dssp HHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCcccCCCHHH-HHHHHHHHHHhhhc
Confidence 344445544567887754466665 47889999998653
No 34
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.76 E-value=97 Score=23.81 Aligned_cols=32 Identities=13% Similarity=0.326 Sum_probs=21.9
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 025407 211 PNMDKQTNTADMLEEAVEYVKFLQKQIEELTE 242 (253)
Q Consensus 211 P~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~ 242 (253)
|.......-..-|.++..-|..|+.++.+++.
T Consensus 52 P~~GD~~s~~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 52 PQMGDPASLEPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp GGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333244566788888888888888877764
No 35
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=30.78 E-value=1e+02 Score=20.94 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHH
Q 025407 197 TRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235 (253)
Q Consensus 197 erINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~ 235 (253)
+.|.+.|..-...+|.....++... +...|.||+.|..
T Consensus 47 ~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 84 (90)
T 1cyi_A 47 ESIIYQVENGKGAMPAWADRLSEEE-IQAVAEYVFKQAT 84 (90)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcccccCCHHH-HHHHHHHHHhccc
Confidence 3444444444567887665466555 6789999999876
No 36
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=30.65 E-value=1.1e+02 Score=20.39 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHH
Q 025407 199 ISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235 (253)
Q Consensus 199 INer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~ 235 (253)
|.+.|+.-...+|.....++... +...|.||+.|..
T Consensus 47 l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 82 (85)
T 1gdv_A 47 ITYQVQNGKNAMPAFGGRLVDED-IEDAANYVLSQSE 82 (85)
T ss_dssp HHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCCCCCCCCHHH-HHHHHHHHHHHhh
Confidence 33434333457887654466555 4779999999875
No 37
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.36 E-value=61 Score=22.37 Aligned_cols=30 Identities=10% Similarity=0.178 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025407 219 TADMLEEAVEYVKFLQKQIEELTEHQRRCK 248 (253)
Q Consensus 219 KAsILeeAIdYIk~LQ~qVk~Le~e~~k~~ 248 (253)
--..|++.++-+..|.++++.|+.+.....
T Consensus 25 VD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999998877653
No 38
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=29.32 E-value=41 Score=23.01 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 025407 228 EYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 228 dYIk~LQ~qVk~Le~e~~k 246 (253)
.||..|+.+|+.|+.....
T Consensus 49 ~~~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888899999888876654
No 39
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=28.75 E-value=1.1e+02 Score=20.68 Aligned_cols=38 Identities=11% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHH
Q 025407 197 TRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235 (253)
Q Consensus 197 erINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~ 235 (253)
+.|.+.|..-...+|.....++... +...|.||+.|..
T Consensus 48 ~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 85 (89)
T 1c6r_A 48 EAITYQVENGKGAMPAWSGTLDDDE-IAAVAAYVYDQAS 85 (89)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCcCCHHH-HHHHHHHHHHHcc
Confidence 3444444444567887765466655 5788999999875
No 40
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.58 E-value=47 Score=24.27 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhh
Q 025407 196 RTRISDRIRKLQD 208 (253)
Q Consensus 196 RerINer~~~Lrs 208 (253)
|++=...|..|..
T Consensus 24 ReRK~~~i~~LE~ 36 (70)
T 1gd2_E 24 RKRKEDHLKALET 36 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444455555543
No 41
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=26.42 E-value=87 Score=18.89 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 025407 220 ADMLEEAVEYVKFLQKQIE 238 (253)
Q Consensus 220 AsILeeAIdYIk~LQ~qVk 238 (253)
.+-|-||-.|+..|+.+++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4567789999998887765
No 42
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=25.85 E-value=22 Score=28.68 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=22.3
Q ss_pred hhcCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 025407 208 DLVPNMDKQTNTADMLEEAVEYVKFLQKQIEE 239 (253)
Q Consensus 208 sLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~ 239 (253)
.++|+=.... ....|+.+++|++.++++|++
T Consensus 191 ~i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 191 YVVAGHDDWK-DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp EEEESBSCCC-STTHHHHHHHHHHHHHHTC--
T ss_pred EEEeCCCCcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 4567655434 457899999999999998854
No 43
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=25.35 E-value=81 Score=21.24 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025407 223 LEEAVEYVKFLQKQIEELTEH 243 (253)
Q Consensus 223 LeeAIdYIk~LQ~qVk~Le~e 243 (253)
+.+--+||+.|+++..+|+.-
T Consensus 5 vkelknyiqeleernaelknl 25 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNL 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhH
Confidence 556778999999887776643
No 44
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=24.70 E-value=34 Score=23.87 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 025407 227 VEYVKFLQKQIEELTEHQRRC 247 (253)
Q Consensus 227 IdYIk~LQ~qVk~Le~e~~k~ 247 (253)
-.||..|+.+|+.||......
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999998765543
No 45
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=24.65 E-value=56 Score=28.63 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 025407 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEEL 240 (253)
Q Consensus 196 RerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~L 240 (253)
|..++.=+..|+.|+-.-- .++-.++.+||+|+|.|-+-+..|
T Consensus 53 ~~Dl~~F~~QL~qL~~~~i--~~Tre~v~d~l~YLkkLD~l~~~L 95 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKDDI--SNTQEIIKDVLEYLKKLDEIYGSL 95 (204)
T ss_dssp HHHHHHHHHHHHHHHHHSC--STTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777877764332 368899999999999998755443
No 46
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.34 E-value=56 Score=23.09 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025407 191 AERVRRTRISDRIRKLQ 207 (253)
Q Consensus 191 aERrRRerINer~~~Lr 207 (253)
+.|+=|.+=.+++..|.
T Consensus 20 AArrsR~RK~~~~~~Le 36 (63)
T 2dgc_A 20 AARRSRARKLQRMKQLE 36 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334344444443
No 47
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=23.03 E-value=56 Score=26.45 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=22.9
Q ss_pred hhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 025407 207 QDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEE 239 (253)
Q Consensus 207 rsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~ 239 (253)
..++|+=....+ ..+++.+++||+.|++++.+
T Consensus 200 ~~v~pgHg~~~~-~~~~~~~~~~l~~~~~~~~~ 231 (232)
T 1a7t_A 200 RYVVPGHGNYGG-TELIEHTKQIVNQYIESTSK 231 (232)
T ss_dssp SEEEESSSCCBC-THHHHHHHHHHHHHHHHHC-
T ss_pred CEEECCCCCccc-HHHHHHHHHHHHHHHHHhcC
Confidence 446676555344 47889999999999988753
No 48
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=22.95 E-value=1.6e+02 Score=20.04 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHH
Q 025407 197 TRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235 (253)
Q Consensus 197 erINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~ 235 (253)
+.|.+.|..-+..+|.....++... +...|.||+.|..
T Consensus 50 ~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 87 (91)
T 1ls9_A 50 EAIKYQVNNGKGAMPAWADRLDEDD-IEAVSNYVYDQAV 87 (91)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCCcchhhhCCHHH-HHHHHHHHHHhcc
Confidence 3444444444567887765466555 5788999999875
No 49
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.55 E-value=65 Score=22.32 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhh
Q 025407 233 LQKQIEELTEHQRR 246 (253)
Q Consensus 233 LQ~qVk~Le~e~~k 246 (253)
|+.+|..|+.+...
T Consensus 41 L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 41 LASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555444433
No 50
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=22.28 E-value=1.5e+02 Score=19.88 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHH
Q 025407 197 TRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235 (253)
Q Consensus 197 erINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~ 235 (253)
+.|...+..-+..+|.....++...| ...+.||+.|..
T Consensus 47 ~~l~~~i~~g~~~Mp~~~~~ls~~ei-~~l~~yl~~~~~ 84 (88)
T 3dmi_A 47 KSIISQVTGGKNAMPAFGGRLSDEEI-ANVAAYVLASAE 84 (88)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCCCCcCCCCCHHHH-HHHHHHHHHHhc
Confidence 34555555555688887654666554 678899998864
No 51
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=21.42 E-value=1.4e+02 Score=20.05 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHH
Q 025407 198 RISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235 (253)
Q Consensus 198 rINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~ 235 (253)
.|...+..-...+|.....++... +...|.||..|.+
T Consensus 53 ~~~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~l~~ 89 (93)
T 3dr0_A 53 AVAYQVTNGQGAMPAFGGRLSDAD-IANVAAYIADQAE 89 (93)
T ss_dssp HHHHHHHHCBTTBCCCBTTBCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHH-HHHHHHHHHHHHh
Confidence 444444444567887755466655 4688999998864
No 52
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=20.31 E-value=55 Score=26.42 Aligned_cols=30 Identities=7% Similarity=0.219 Sum_probs=22.7
Q ss_pred hhcCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 025407 208 DLVPNMDKQTNTADMLEEAVEYVKFLQKQIE 238 (253)
Q Consensus 208 sLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk 238 (253)
.++|+=....+ ...|+++++||+.|+++|+
T Consensus 216 ~i~pgHg~~~~-~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 216 IVIPGHGEWGG-PEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp EEEESBSCCBS-THHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCcCC-HHHHHHHHHHHHHHHHHhc
Confidence 45676554344 5789999999999999874
No 53
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.01 E-value=2.3e+02 Score=22.97 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 192 ERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 192 ERrRRerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
|+.-=.++|+++..++.=++.... .+.+.++.+--+-|..|.+++..|...+..
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~-rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~ 61 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSL-VEAADKYAELEKEKATLEAEIARLREVHSQ 61 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCT-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445789999999888877776 577788888888888899988888866554
Done!