Query 025407
Match_columns 253
No_of_seqs 172 out of 841
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 09:39:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025407.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025407hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1am9a_ a.38.1.1 (A:) SREBP-1a 99.6 2.5E-16 1.8E-20 116.7 7.2 63 186-248 8-70 (80)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 99.6 7.5E-16 5.5E-20 109.4 4.2 55 196-250 1-55 (61)
3 d1a0aa_ a.38.1.1 (A:) Pho4 B/H 99.5 1.1E-15 7.8E-20 109.0 3.9 52 186-237 4-61 (63)
4 d1nlwa_ a.38.1.1 (A:) Mad prot 99.5 4.9E-15 3.6E-19 109.0 7.4 62 187-248 4-67 (79)
5 d1mdya_ a.38.1.1 (A:) Myod B/H 99.5 5.2E-16 3.8E-20 112.5 1.6 53 186-238 14-67 (68)
6 d1nkpb_ a.38.1.1 (B:) Max prot 99.5 8.8E-15 6.4E-19 108.5 7.4 60 187-246 5-65 (83)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 99.5 1.6E-14 1.2E-18 108.0 7.4 60 187-246 9-70 (88)
8 d1an4a_ a.38.1.1 (A:) Usf B/HL 99.5 9.5E-15 6.9E-19 104.6 2.8 52 186-237 7-63 (65)
9 d1mn3a_ a.5.2.4 (A:) Vacuolar 42.7 16 0.0011 24.1 4.2 27 189-215 2-28 (54)
10 d2clyb1 f.53.1.1 (B:4-123) ATP 33.7 27 0.002 25.9 4.8 49 198-247 65-118 (120)
11 d1ql3a_ a.3.1.1 (A:) Cytochrom 29.2 19 0.0014 25.3 3.1 38 197-234 59-99 (99)
12 d1lrza1 a.2.7.4 (A:245-309) Me 24.0 28 0.0021 23.4 3.0 19 228-246 3-21 (65)
13 d1m2xa_ d.157.1.1 (A:) Zn meta 23.0 16 0.0012 27.1 1.7 29 207-236 190-218 (219)
No 1
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.62 E-value=2.5e-16 Score=116.75 Aligned_cols=63 Identities=27% Similarity=0.507 Sum_probs=58.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025407 186 HPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELTEHQRRCK 248 (253)
Q Consensus 186 ~~HsiaERrRRerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k~~ 248 (253)
..|+.+||+||++||+.|..|++|||++..++||++||..||+||+.|+++++.|+.++....
T Consensus 8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk 70 (80)
T d1am9a_ 8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999999887799999999999999999999999998877654
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.56 E-value=7.5e-16 Score=109.44 Aligned_cols=55 Identities=31% Similarity=0.535 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 025407 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEELTEHQRRCKCS 250 (253)
Q Consensus 196 RerINer~~~LrsLVP~~~Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k~~c~ 250 (253)
|++||++|..|++|||++.+++|||+||.+||+||++||++++.|++++....|.
T Consensus 1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 55 (61)
T d1uklc_ 1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLA 55 (61)
T ss_dssp CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999988669999999999999999999999999998877654
No 3
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.54 E-value=1.1e-15 Score=108.98 Aligned_cols=52 Identities=27% Similarity=0.463 Sum_probs=47.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhcCCC------CCCCChhhHHHHHHHHHHHHHHHH
Q 025407 186 HPRSIAERVRRTRISDRIRKLQDLVPNM------DKQTNTADMLEEAVEYVKFLQKQI 237 (253)
Q Consensus 186 ~~HsiaERrRRerINer~~~LrsLVP~~------~Kk~DKAsILeeAIdYIk~LQ~qV 237 (253)
..|+++||+||++||+.|..|++|||.+ ..+++|++||+.||+||++||++|
T Consensus 4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v 61 (63)
T d1a0aa_ 4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 4599999999999999999999999953 345899999999999999999875
No 4
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.54 E-value=4.9e-15 Score=108.96 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=55.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025407 187 PRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEELTEHQRRCK 248 (253)
Q Consensus 187 ~HsiaERrRRerINer~~~LrsLVP~~~--Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k~~ 248 (253)
.|+.+||+||++||+.|..|+++||.+. .+++|++||..||+||++|+.+++.|..+.....
T Consensus 4 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~ 67 (79)
T d1nlwa_ 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999753 2489999999999999999999999988776543
No 5
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.53 E-value=5.2e-16 Score=112.53 Aligned_cols=53 Identities=17% Similarity=0.366 Sum_probs=48.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhcCCCC-CCCChhhHHHHHHHHHHHHHHHHH
Q 025407 186 HPRSIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIE 238 (253)
Q Consensus 186 ~~HsiaERrRRerINer~~~LrsLVP~~~-Kk~DKAsILeeAIdYIk~LQ~qVk 238 (253)
..|++.||+||++||+.|..|++|||.+. ++++|++||..||+||++||++|+
T Consensus 14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~ 67 (68)
T d1mdya_ 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 35999999999999999999999999864 458999999999999999998774
No 6
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.52 E-value=8.8e-15 Score=108.47 Aligned_cols=60 Identities=25% Similarity=0.522 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 187 PRSIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 187 ~HsiaERrRRerINer~~~LrsLVP~~~-Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
.|+.+||+||++||+.|..|++|||.+. ++++|++||..||+||++|+++++.|..+...
T Consensus 5 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~ 65 (83)
T d1nkpb_ 5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999753 45899999999999999999999988876654
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.50 E-value=1.6e-14 Score=108.05 Aligned_cols=60 Identities=20% Similarity=0.403 Sum_probs=53.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025407 187 PRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 187 ~HsiaERrRRerINer~~~LrsLVP~~~--Kk~DKAsILeeAIdYIk~LQ~qVk~Le~e~~k 246 (253)
.|+.+||+||++||+.|..|+++||++. .+++|++||..||+||+.|+++++.|+.+...
T Consensus 9 ~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~ 70 (88)
T d1nkpa_ 9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999753 34899999999999999999999998776543
No 8
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.45 E-value=9.5e-15 Score=104.57 Aligned_cols=52 Identities=23% Similarity=0.452 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhcCCCC-----CCCChhhHHHHHHHHHHHHHHHH
Q 025407 186 HPRSIAERVRRTRISDRIRKLQDLVPNMD-----KQTNTADMLEEAVEYVKFLQKQI 237 (253)
Q Consensus 186 ~~HsiaERrRRerINer~~~LrsLVP~~~-----Kk~DKAsILeeAIdYIk~LQ~qV 237 (253)
..|+++||+||++||+.|..|++|||.+. .+++|++||..||+||+.||++.
T Consensus 7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~ 63 (65)
T d1an4a_ 7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 45999999999999999999999999753 24899999999999999999764
No 9
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.68 E-value=16 Score=24.11 Aligned_cols=27 Identities=26% Similarity=0.597 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 025407 189 SIAERVRRTRISDRIRKLQDLVPNMDK 215 (253)
Q Consensus 189 siaERrRRerINer~~~LrsLVP~~~K 215 (253)
.+++|.+|+..++-+..|+.+.|..++
T Consensus 2 ~~i~~i~~~e~~e~~~~Lk~MFP~~D~ 28 (54)
T d1mn3a_ 2 SLIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 467888899999999999999998775
No 10
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=33.67 E-value=27 Score=25.92 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhhcCCCCCCCC-----hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025407 198 RISDRIRKLQDLVPNMDKQTN-----TADMLEEAVEYVKFLQKQIEELTEHQRRC 247 (253)
Q Consensus 198 rINer~~~LrsLVP~~~Kk~D-----KAsILeeAIdYIk~LQ~qVk~Le~e~~k~ 247 (253)
.+...+..|.-.+|.... +. ..-++.++-.|++..+++++.|+++..+.
T Consensus 65 ~fek~y~alkvp~p~d~~-t~~ida~e~e~~~~~~~~~~~s~~rI~~lekeLe~i 118 (120)
T d2clyb1 65 DFEKKFNALKVPIPEDKY-TAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKM 118 (120)
T ss_dssp HHHHHHTTCCCCCCCCCC-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCChhhh-hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777633343332 32 56678889999999999999999887653
No 11
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}
Probab=29.17 E-value=19 Score=25.28 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhcCCCC---CCCChhhHHHHHHHHHHHHH
Q 025407 197 TRISDRIRKLQDLVPNMD---KQTNTADMLEEAVEYVKFLQ 234 (253)
Q Consensus 197 erINer~~~LrsLVP~~~---Kk~DKAsILeeAIdYIk~LQ 234 (253)
+.|.+-|..=+.++|+.. ..+.+..-+.+.|.|||.+|
T Consensus 59 ~~L~~~l~~P~~~~pgt~M~~~gl~~~~d~~dliaYLks~~ 99 (99)
T d1ql3a_ 59 EALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLEGQQ 99 (99)
T ss_dssp HHHHHHHHCHHHHSTTCSCCCCCCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhChHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcC
Confidence 466777777788999621 11335566788889988765
No 12
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=24.04 E-value=28 Score=23.41 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 025407 228 EYVKFLQKQIEELTEHQRR 246 (253)
Q Consensus 228 dYIk~LQ~qVk~Le~e~~k 246 (253)
+||..|+.+...|+.+..+
T Consensus 3 eYl~~L~~~~~~L~~~i~k 21 (65)
T d1lrza1 3 EYIKELNEERDILNKDLNK 21 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6999999999888876655
No 13
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}
Probab=22.98 E-value=16 Score=27.12 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=21.2
Q ss_pred hhhcCCCCCCCChhhHHHHHHHHHHHHHHH
Q 025407 207 QDLVPNMDKQTNTADMLEEAVEYVKFLQKQ 236 (253)
Q Consensus 207 rsLVP~~~Kk~DKAsILeeAIdYIk~LQ~q 236 (253)
.-+||+=...+++ ..|+.+++||+.+++|
T Consensus 190 ~~i~pgHg~~~~~-~~i~~~~~~l~~~~~~ 218 (219)
T d1m2xa_ 190 QYVVAGHDDWKDQ-RSIQHTLDLINEYQQK 218 (219)
T ss_dssp SEEEESBSCCCST-THHHHHHHHHHHHHHT
T ss_pred cEEECCCCCccCh-HHHHHHHHHHHHHHhC
Confidence 3467765554454 5578999999999886
Done!