Query 025409
Match_columns 253
No_of_seqs 110 out of 156
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:30:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05216 UNC-50: UNC-50 family 100.0 1E-109 2E-114 742.2 24.3 231 20-250 1-231 (231)
2 KOG3012 Uncharacterized conser 100.0 2E-106 4E-111 718.6 19.6 233 15-251 25-257 (259)
3 PF04893 Yip1: Yip1 domain; I 82.3 7.1 0.00015 31.4 7.2 92 114-224 74-165 (172)
4 PF06738 DUF1212: Protein of u 58.9 64 0.0014 27.4 8.0 62 21-103 69-130 (193)
5 PF06181 DUF989: Protein of un 50.8 46 0.001 31.9 6.3 49 65-126 142-190 (300)
6 PF12433 PV_NSP1: Parvovirus n 43.9 7.3 0.00016 30.5 -0.1 13 58-70 3-15 (80)
7 PF03907 Spo7: Spo7-like prote 43.5 27 0.00058 31.9 3.4 78 50-132 2-86 (207)
8 PF06161 DUF975: Protein of un 32.9 3.4E+02 0.0074 23.8 8.9 30 144-174 79-109 (243)
9 COG2205 KdpD Osmosensitive K+ 30.0 3.2E+02 0.0069 30.1 9.2 96 60-171 387-486 (890)
10 PF07297 DPM2: Dolichol phosph 26.2 1.2E+02 0.0027 23.6 4.1 33 185-218 4-36 (78)
11 PF10129 OpgC_C: OpgC protein; 26.1 3.8E+02 0.0082 25.8 8.3 45 155-199 133-177 (358)
12 PF15086 UPF0542: Uncharacteri 25.4 56 0.0012 25.4 2.1 8 67-74 13-20 (74)
13 KOG3114 Uncharacterized conser 24.1 54 0.0012 31.3 2.1 76 142-224 143-218 (290)
14 PF13974 YebO: YebO-like prote 23.8 64 0.0014 25.3 2.2 19 114-132 4-22 (80)
15 PF04156 IncA: IncA protein; 22.8 4.7E+02 0.01 22.1 7.6 28 76-103 11-38 (191)
16 COG1055 ArsB Na+/H+ antiporter 22.5 1.1E+02 0.0023 30.5 4.0 112 20-149 169-281 (424)
17 TIGR02808 short_TIGR02808 cons 21.3 33 0.00071 23.9 0.1 12 203-214 10-21 (42)
18 PF03419 Peptidase_U4: Sporula 21.1 5.8E+02 0.013 23.4 8.3 47 80-126 62-109 (293)
19 PF06930 DUF1282: Protein of u 20.9 5.1E+02 0.011 21.8 11.5 24 190-213 127-150 (170)
No 1
>PF05216 UNC-50: UNC-50 family; InterPro: IPR007881 This family contains several eukaryotic transmembrane proteins which are related to the Caenorhabditis elegans protein UNC-50 Q10045 from SWISSPROT. A mammalian homologue, UNCL is a novel inner nuclear membrane protein that associates with RNA and is involved in the cell-surface expression of neuronal nicotinic receptors. UNCL plays a broader role because UNCL homologues are present in two yeast and a plant species, none of which express nicotinic receptors and it is also found in tissues that lack nicotinic receptors.
Probab=100.00 E-value=1.1e-109 Score=742.23 Aligned_cols=231 Identities=49% Similarity=0.962 Sum_probs=227.7
Q ss_pred CChhHHHHhhcCcCCchHhHHHHHHHHhcccchhhhhhheeeeccCccccCCCchHHHHHHHHHHHHHHHHHHHhcCChH
Q 025409 20 PMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSAT 99 (253)
Q Consensus 20 ~~lp~~~rRl~k~~qMDfE~A~WqM~~L~~~P~kVYr~~~YrKqTKnqwaRDDPaFlvL~~~~l~issi~~~l~~~~~~~ 99 (253)
+++|+|+||++|++|||||+|+|||.+||++|||||||++||||||||||||||||+||+++++++||++||++|++|++
T Consensus 1 ~~~~~~~rRl~k~~qMDfE~A~WqM~~L~~~P~kVyr~~~yrKqTKnqwaRDDPaFlvL~~~~l~issi~~~l~~~~s~~ 80 (231)
T PF05216_consen 1 SKLPKYLRRLFKFRQMDFEFALWQMFYLCISPRKVYRNFYYRKQTKNQWARDDPAFLVLLSFFLVISSIAWGLAYSLSFW 80 (231)
T ss_pred CChHHHHHHhcCchhccHHHHHHHHHHHHhCHHHHHHHhhhcccCCccccCCCccHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccCceeEEEeeecccCcchhHHHHHHHHHHHHHHHhhc
Q 025409 100 HAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMV 179 (253)
Q Consensus 100 ~~~~~~l~~v~vdfl~~G~iiAT~~W~~~Nr~l~~~~~~~~~~~~~VEW~YaFDVHcNaFfp~~v~LyvlQ~~LlPll~~ 179 (253)
++++++++||++||+++|++|||++|+++||+++++.+++|++||+|||+||||||||||||+|++|||+|++|+|++.+
T Consensus 81 ~~~~~~l~~v~vdfl~~G~~iAT~~w~~~Nr~l~~~~~~~~~~~~~VEW~Y~FDVHcNaFfp~~~~Lyv~Q~~LlP~l~~ 160 (231)
T PF05216_consen 81 GILKLILWMVFVDFLLVGLIIATIFWFVANRFLRPSSSHSHSVEQDVEWGYCFDVHCNAFFPLFVLLYVLQFFLLPLLLK 160 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCceEEEEeeecchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999997777899999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhHhhhhhhcccccccccccceehhhhHHHHHHHHHHHHHhccchhHHHHHhhcC
Q 025409 180 HGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFS 250 (253)
Q Consensus 180 ~~~~s~~~gNtLylia~~yY~YiTFLGY~~LPFL~~t~~~L~Pi~~~~~l~~~sl~~g~N~s~~~~~~Yf~ 250 (253)
|+|+|+++|||||++|++||+||||||||+||||+|||++|+|+++++++|++|+++|||+|++++++||+
T Consensus 161 ~~~~~~~~gNtLy~va~~yY~YiTFLGY~~LPFL~~t~~~L~Pi~~~~~~~~~sl~~g~N~s~~~~~~Y~~ 231 (231)
T PF05216_consen 161 PSFLSLLLGNTLYLVAIGYYFYITFLGYSALPFLKNTEVFLYPILLLAVLYILSLLFGFNLSKHLLSFYFY 231 (231)
T ss_pred cchHHHHHhHHHHHHHHHHHHHHHHHhhccCchhhcchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
No 2
>KOG3012 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-106 Score=718.60 Aligned_cols=233 Identities=48% Similarity=0.878 Sum_probs=225.8
Q ss_pred cCCCCCChhHHHHhhcCcCCchHhHHHHHHHHhcccchhhhhhheeeeccCccccCCCchHHHHHHHHHHHHHHHHHHHh
Q 025409 15 ASRTNPMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAY 94 (253)
Q Consensus 15 ~~~~~~~lp~~~rRl~k~~qMDfE~A~WqM~~L~~~P~kVYr~~~YrKqTKnqwaRDDPaFlvL~~~~l~issi~~~l~~ 94 (253)
+++ .++.-+|+||++|++|||||+|.|||.|||++|||||||++||||||||||||||||+|++++++++||++||+++
T Consensus 25 ~s~-~~ks~~~~RRL~k~~QMDfE~A~WqMl~L~~~P~kVYr~~~YrKQTKnQwARDDPaFlVl~s~~l~vssi~~a~~~ 103 (259)
T KOG3012|consen 25 HSA-GAKSFKYLRRLFKFRQMDFEFALWQMLYLFTSPRKVYRNFHYRKQTKNQWARDDPAFLVLLSLLLVVSSIGWAYVL 103 (259)
T ss_pred hhh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHHhChHHHHhHhhhhhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHh
Confidence 344 4456699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccCceeEEEeeecccCcchhHHHHHHHHHHHHH
Q 025409 95 DHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLS 174 (253)
Q Consensus 95 ~~~~~~~~~~~l~~v~vdfl~~G~iiAT~~W~~~Nr~l~~~~~~~~~~~~~VEW~YaFDVHcNaFfp~~v~LyvlQ~~Ll 174 (253)
++|+.+++++++|||++||+++|++|||++|+++||+++|+. +++|++|||+||||||||||||++++|||+|++|+
T Consensus 104 ~ls~~g~v~~~~~vvfvdf~~vG~iiAT~~wfi~Nryl~k~~---~s~d~~vEW~YcFDVHcNsFfp~lvlLyvIq~fl~ 180 (259)
T KOG3012|consen 104 DLSFIGFVKFLVWVVFVDFIIVGVIIATLFWFISNRYLRKRK---SSRDYDVEWGYCFDVHCNSFFPMLVLLYVIQLFLL 180 (259)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc---cccccceeeeeeeeehhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999874 78899999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHHHHhHhhhhhhcccccccccccceehhhhHHHHHHHHHHHHHhccchhHHHHHhhcCC
Q 025409 175 PLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPILILSGFNPSRYFMNMYFSW 251 (253)
Q Consensus 175 Pll~~~~~~s~~~gNtLylia~~yY~YiTFLGY~~LPFL~~t~~~L~Pi~~~~~l~~~sl~~g~N~s~~~~~~Yf~~ 251 (253)
|++..|+|+|+++|||||++|++||+|+||+||++|||||||+.+|+|+++++++|++++..|||.++.++++|..+
T Consensus 181 plI~~~~fIslllgNtl~lva~~yY~ylTFlGY~~LPfLknt~~~L~Pi~~~~il~~isl~~gwn~~~~l~~fY~~r 257 (259)
T KOG3012|consen 181 PLILTDNFISLLLGNTLWLVAAGYYVYLTFLGYNALPFLKNTVFLLYPIPPLFILYLLSLALGWNFTKTLVNFYKYR 257 (259)
T ss_pred HHHccccHHHHHHhhHHHHHHhhHhheeeeeccccchhhhcceeeeechHHHHHHHHHHHhccccchhhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999765
No 3
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=82.26 E-value=7.1 Score=31.36 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCcccCceeEEEeeecccCcchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 025409 114 LITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFM 193 (253)
Q Consensus 114 l~~G~iiAT~~W~~~Nr~l~~~~~~~~~~~~~VEW~YaFDVHcNaFfp~~v~LyvlQ~~LlPll~~~~~~s~~~gNtLyl 193 (253)
++..++.|.+.|.+ .|.+..+. + +.=+|.+=+-|..|..+ ..++..++...... +....-.
T Consensus 74 ~i~~~i~~~~~~~~-~~~~gg~~---~-------~~~~~~~~~ya~~P~~~-~~~~~~~~~~~~~~-------~~~~~~~ 134 (172)
T PF04893_consen 74 LIGWFILALILHLI-AKLFGGKG---S-------FKETFSVVGYALIPLLL-GSLISIILSLFFGP-------LSLLVII 134 (172)
T ss_pred HHHHHHHHHHHHHH-HHHhCCCC---C-------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHH
Confidence 45566666666664 55554321 1 11255566666777653 23333222222111 3334455
Q ss_pred HHHhHhhhhhhcccccccccccceehhhhHH
Q 025409 194 AAASYYHYLNFLGYDVLPFLERTTFFLYPIG 224 (253)
Q Consensus 194 ia~~yY~YiTFLGY~~LPFL~~t~~~L~Pi~ 224 (253)
++..+..++...|..+.-=+++.+-.+..+.
T Consensus 135 l~~iw~~~l~~~gl~~~~~~~~~ka~~~~~~ 165 (172)
T PF04893_consen 135 LFSIWSAYLLVIGLREVHRLSRGKAFLIVII 165 (172)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 6666777888888877766666655554444
No 4
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=58.87 E-value=64 Score=27.41 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=41.9
Q ss_pred ChhHHHHhhcCcCCchHhHHHHHHHHhcccchhhhhhheeeeccCccccCCCchHHHHHHHHHHHHHHHHHHHhcCChHH
Q 025409 21 MFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATH 100 (253)
Q Consensus 21 ~lp~~~rRl~k~~qMDfE~A~WqM~~L~~~P~kVYr~~~YrKqTKnqwaRDDPaFlvL~~~~l~issi~~~l~~~~~~~~ 100 (253)
.+.+.-||+.+ .++|.|.|..++=.+--.|++ | |-. +..+.-.+++.+++..++.++.+
T Consensus 69 ~v~~l~~~~~~-~~~~~~ea~~~L~~I~~~~~~------y------------~~~--~~~l~~~l~~~~fa~lfgg~~~~ 127 (193)
T PF06738_consen 69 AVNRLSRRIVA-GQLSLEEAIERLDEIDREPPR------Y------------PPW--LVILAAGLASAAFALLFGGSWID 127 (193)
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHhhCCCC------C------------CHH--HHHHHHHHHHHHHHHHHCCCHHH
Confidence 45556666655 889999999888666555422 2 222 24556677788999999998776
Q ss_pred HHH
Q 025409 101 AIF 103 (253)
Q Consensus 101 ~~~ 103 (253)
.+.
T Consensus 128 ~~~ 130 (193)
T PF06738_consen 128 MIV 130 (193)
T ss_pred HHH
Confidence 555
No 5
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=50.79 E-value=46 Score=31.92 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=36.4
Q ss_pred CccccCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025409 65 KNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGAMLATFCWF 126 (253)
Q Consensus 65 KnqwaRDDPaFlvL~~~~l~issi~~~l~~~~~~~~~~~~~l~~v~vdfl~~G~iiAT~~W~ 126 (253)
|..-.++|+.+.+++.+++++.+-+++-.++.... ++++|..++|++..
T Consensus 142 rsplg~~~~~l~~~~~v~~~~~a~~~~q~FSgRaa-------------~i~vGa~lgTiM~~ 190 (300)
T PF06181_consen 142 RSPLGKNDTLLGVVLFVLLVVAAWGLTQVFSGRAA-------------FIHVGAWLGTIMAA 190 (300)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHHHHhcchHH-------------HHHHHHHHHHHHHH
Confidence 33355688999888888888777777766655332 78999999999863
No 6
>PF12433 PV_NSP1: Parvovirus non-structural protein 1 ; InterPro: IPR021076 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents a domain of the parvovirus non-capsid protein 1. It is found immediately N-terminal to the helicase domain and its function is unknown. Parvoviral NS1 regulates host gene expression through histone acetylation [].
Probab=43.87 E-value=7.3 Score=30.45 Aligned_cols=13 Identities=38% Similarity=0.739 Sum_probs=10.5
Q ss_pred heeeeccCccccC
Q 025409 58 TKYHKQTKNQWAR 70 (253)
Q Consensus 58 ~~YrKqTKnqwaR 70 (253)
.|+|||||.+|..
T Consensus 3 kY~hKQTKqdYnK 15 (80)
T PF12433_consen 3 KYFHKQTKQDYNK 15 (80)
T ss_pred ccccchhhhhhcc
Confidence 4789999988864
No 7
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=43.51 E-value=27 Score=31.87 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=41.2
Q ss_pred cchhhhhhh-----eeeeccCccccCCCchHHHHHHHHHHHHHHHHHHHhcCChHH--HHHHHHHHHHHHHHHHHHHHHH
Q 025409 50 SPKVVYQHT-----KYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATH--AIFVVISVLLFHFLITGAMLAT 122 (253)
Q Consensus 50 ~P~kVYr~~-----~YrKqTKnqwaRDDPaFlvL~~~~l~issi~~~l~~~~~~~~--~~~~~l~~v~vdfl~~G~iiAT 122 (253)
+|.++|||- .-|.|-.+|=+|.----+.|..+++.++..+|.+.+.++-.+ ....+.. =++++|++-+.
T Consensus 2 s~~~iyrNLLIlEesLR~q~~~lr~rrrkyt~FL~~L~~~i~~~~y~lf~~~~~~~~g~~~~~~~----~~ll~~vvTlv 77 (207)
T PF03907_consen 2 SPSKIYRNLLILEESLRQQYLQLRARRRKYTFFLSLLCLWIAFFFYALFFRPREDGTGLVRYFLK----FCLLFGVVTLV 77 (207)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhHHHHHHHH----HHHHHHHHHHH
Confidence 466677663 223333333333333334456677788999999999887543 3332222 24455555554
Q ss_pred HHHHHHhhcc
Q 025409 123 FCWFLTNSYL 132 (253)
Q Consensus 123 ~~W~~~Nr~l 132 (253)
.+| .++-|=
T Consensus 78 Lf~-~SG~y~ 86 (207)
T PF03907_consen 78 LFW-ASGMYE 86 (207)
T ss_pred Hhh-ccceee
Confidence 444 444433
No 8
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=32.85 E-value=3.4e+02 Score=23.78 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=15.8
Q ss_pred CceeEEEeeeccc-CcchhHHHHHHHHHHHHH
Q 025409 144 QRVEWLYAFDVHC-NSFFPMFVMLYVIHYFLS 174 (253)
Q Consensus 144 ~~VEW~YaFDVHc-NaFfp~~v~LyvlQ~~Ll 174 (253)
+++|.+..|+.=- +.|.+. +.+++++-++.
T Consensus 79 ~~~~~~d~f~~F~~~~f~k~-~~~~ll~~l~~ 109 (243)
T PF06161_consen 79 EEPSFSDLFYGFKKKRFGKS-FLLYLLISLFI 109 (243)
T ss_pred CCCCHHHHHHHHccccHHHH-HHHHHHHHHHH
Confidence 4566666666543 444444 45555554444
No 9
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=30.00 E-value=3.2e+02 Score=30.07 Aligned_cols=96 Identities=15% Similarity=0.290 Sum_probs=49.6
Q ss_pred eeeccCccccCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccCCC
Q 025409 60 YHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATHAIFVVISVLLFHFLITGA----MLATFCWFLTNSYLRED 135 (253)
Q Consensus 60 YrKqTKnqwaRDDPaFlvL~~~~l~issi~~~l~~~~~~~~~~~~~l~~v~vdfl~~G~----iiAT~~W~~~Nr~l~~~ 135 (253)
++-+-+..|- +..++....+...+.+++-+-...+...+.-+.+-.|.+=-+..|. +-|.+.-++=|-|+
T Consensus 387 ~~~~~~~~~~---~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF--- 460 (890)
T COG2205 387 WRPKIQGSWS---RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFF--- 460 (890)
T ss_pred hhhhccccch---HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhee---
Confidence 4445566776 4455555555555555553222223333222222223332333344 44444455556666
Q ss_pred CCCCCcccCceeEEEeeecccCcchhHHHHHHHHHH
Q 025409 136 SPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHY 171 (253)
Q Consensus 136 ~~~~~~~~~~VEW~YaFDVHcNaFfp~~v~LyvlQ~ 171 (253)
+|-.|.|-||--.+..-|.+.-.+-+
T Consensus 461 ----------~ePryTf~v~d~~y~vTf~vml~vai 486 (890)
T COG2205 461 ----------TEPRYTFAVSDPQYLVTFAVMLAVAL 486 (890)
T ss_pred ----------cCCceEEEEecCchHHHHHHHHHHHH
Confidence 45579999999888777665443333
No 10
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=26.15 E-value=1.2e+02 Score=23.59 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhHhhhhhhccccccccccccee
Q 025409 185 VLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTF 218 (253)
Q Consensus 185 ~~~gNtLylia~~yY~YiTFLGY~~LPFL~~t~~ 218 (253)
..+|..+-.+|.+-+.|=|.--- -+||.+..+.
T Consensus 4 r~vG~~~l~~a~~vF~YYt~Wvl-llPFvd~d~~ 36 (78)
T PF07297_consen 4 RLVGLLMLAVALSVFTYYTIWVL-LLPFVDEDHP 36 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcccCCCch
Confidence 46888888888877777776543 7999988764
No 11
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.08 E-value=3.8e+02 Score=25.81 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=33.7
Q ss_pred ccCcchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhHh
Q 025409 155 HCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFMAAASYY 199 (253)
Q Consensus 155 HcNaFfp~~v~LyvlQ~~LlPll~~~~~~s~~~gNtLylia~~yY 199 (253)
+...-.|+++++-..=-+++|+..+..+..+.+|=++|+.|-.+=
T Consensus 133 ~~~dILPlYivlll~~P~~l~l~~r~~~~~L~~S~~lw~~a~~~~ 177 (358)
T PF10129_consen 133 GYLDILPLYIVLLLLAPLILWLLRRGPWLVLAVSVALWLAAQIFG 177 (358)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667888777777777777777788888888888888876543
No 12
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=25.42 E-value=56 Score=25.36 Aligned_cols=8 Identities=38% Similarity=1.082 Sum_probs=5.9
Q ss_pred cccCCCch
Q 025409 67 QWARDDPA 74 (253)
Q Consensus 67 qwaRDDPa 74 (253)
-|++|||-
T Consensus 13 ~~vAkdP~ 20 (74)
T PF15086_consen 13 EWVAKDPY 20 (74)
T ss_pred HHHHcChH
Confidence 47888884
No 13
>KOG3114 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.06 E-value=54 Score=31.34 Aligned_cols=76 Identities=16% Similarity=0.292 Sum_probs=47.1
Q ss_pred ccCceeEEEeeecccCcchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhHhhhhhhcccccccccccceehhh
Q 025409 142 VEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLY 221 (253)
Q Consensus 142 ~~~~VEW~YaFDVHcNaFfp~~v~LyvlQ~~LlPll~~~~~~s~~~gNtLylia~~yY~YiTFLGY~~LPFL~~t~~~L~ 221 (253)
.+..++|+|||+-=.-|.--++.-+-.+++.|+-++...+ -+...+. .+.+-++..+||+-.+|.----.-+.
T Consensus 143 t~~g~~~g~~f~~v~saa~~iy~Y~~ivp~~l~~iL~~~~-~~~~~~~------~~l~~~~~iygysl~i~ip~~vl~iv 215 (290)
T KOG3114|consen 143 TLKGTAYGYDFGLVTSAATLIYGYLTIVPLALWGILSWNG-YSLLLHC------YVLLELVCIYGYSLFIFIPLLVLWIV 215 (290)
T ss_pred cccceeeecccchHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccccc------eehhhHHHHHhhHHHHHHHHHHHHhc
Confidence 3455899999996666666666666677777777776655 3332222 34466667788887766552233334
Q ss_pred hHH
Q 025409 222 PIG 224 (253)
Q Consensus 222 Pi~ 224 (253)
|+.
T Consensus 216 ~~~ 218 (290)
T KOG3114|consen 216 PSS 218 (290)
T ss_pred cHH
Confidence 433
No 14
>PF13974 YebO: YebO-like protein
Probab=23.79 E-value=64 Score=25.34 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 025409 114 LITGAMLATFCWFLTNSYL 132 (253)
Q Consensus 114 l~~G~iiAT~~W~~~Nr~l 132 (253)
.+++++++-+.||+.||.=
T Consensus 4 ~~~~~lv~livWFFVnRaS 22 (80)
T PF13974_consen 4 SVLVLLVGLIVWFFVNRAS 22 (80)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999975
No 15
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.75 E-value=4.7e+02 Score=22.08 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 025409 76 VVICSLLLSVATIAYCAAYDHSATHAIF 103 (253)
Q Consensus 76 lvL~~~~l~issi~~~l~~~~~~~~~~~ 103 (253)
.++....+.+++++--..+.++....+.
T Consensus 11 ~iilgilli~~gI~~Lv~~~~~l~~~~s 38 (191)
T PF04156_consen 11 LIILGILLIASGIAALVLFISGLGALIS 38 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444555666666665444444443333
No 16
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=22.53 E-value=1.1e+02 Score=30.49 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=64.1
Q ss_pred CChhHHHHhhcCcCCchHhHHHHHHHHhcccchhhhhhheeeeccCcc-ccCCCchHHHHHHHHHHHHHHHHHHHhcCCh
Q 025409 20 PMFPQYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQ-WARDDPAFVVICSLLLSVATIAYCAAYDHSA 98 (253)
Q Consensus 20 ~~lp~~~rRl~k~~qMDfE~A~WqM~~L~~~P~kVYr~~~YrKqTKnq-waRDDPaFlvL~~~~l~issi~~~l~~~~~~ 98 (253)
-...+|..+++.+.=+..= +.--+.++... +|+-+..+=++|-|+. =+=.|+..+.+....+.+.-+++...-
T Consensus 169 isF~~f~~~m~~p~l~~li-~~~~vl~~~~~-~~~~~~~~~~~~~~~~~~ai~~~~l~~~~~~vl~~vli~f~~~~---- 242 (424)
T COG1055 169 ISFNDFLANMFPPSLISLI-ATLVVLYLLFR-RKVIPERYDDLLLLDPREAIRDRALFKLSLVVLALVLIAFLLLP---- 242 (424)
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-hhhccccchhhcccChhcccccHHHHHHHHHHHHHHHHHHHhhc----
Confidence 3444555555554444421 11222333333 5555555555565543 344567788888777777777766432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccCceeEE
Q 025409 99 THAIFVVISVLLFHFLITGAMLATFCWFLTNSYLREDSPNSHVVEQRVEWL 149 (253)
Q Consensus 99 ~~~~~~~l~~v~vdfl~~G~iiAT~~W~~~Nr~l~~~~~~~~~~~~~VEW~ 149 (253)
...+.-...+++-|++.|.+++ ++++.+....-.++||.
T Consensus 243 ---------~~~i~~~~val~~a~ill~~~~---~~~~~~~~~il~~v~W~ 281 (424)
T COG1055 243 ---------FLGIPVSLVALVGAAILLLLAR---LSPRESVNKILRGVEWS 281 (424)
T ss_pred ---------ccCCCHHHHHHHHHHHHHHHhc---cCcchhHHHhhhcCChH
Confidence 2334466778889999999988 23322223356789996
No 17
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=21.26 E-value=33 Score=23.91 Aligned_cols=12 Identities=42% Similarity=1.038 Sum_probs=9.9
Q ss_pred hhcccccccccc
Q 025409 203 NFLGYDVLPFLE 214 (253)
Q Consensus 203 TFLGY~~LPFL~ 214 (253)
..|||+++|+.-
T Consensus 10 HilGY~AmPvIi 21 (42)
T TIGR02808 10 HVLGYGAMPFII 21 (42)
T ss_pred HHhcccccchHH
Confidence 579999999754
No 18
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=21.09 E-value=5.8e+02 Score=23.42 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025409 80 SLLLSVATIAYCAAYDH-SATHAIFVVISVLLFHFLITGAMLATFCWF 126 (253)
Q Consensus 80 ~~~l~issi~~~l~~~~-~~~~~~~~~l~~v~vdfl~~G~iiAT~~W~ 126 (253)
..-+.+|.+.-.++|+. ++.+++|.++...++-|+..|++.|...|.
T Consensus 62 ~~k~l~s~lmv~iaf~~~~~~~~~k~~~~fy~~sf~~gG~~~~l~~~~ 109 (293)
T PF03419_consen 62 LFKLLISVLMVLIAFGPKRWRQFIKALLIFYLVSFLLGGIMFALYYFL 109 (293)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555566776 578999999999999999999999844443
No 19
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=20.88 E-value=5.1e+02 Score=21.75 Aligned_cols=24 Identities=29% Similarity=0.431 Sum_probs=16.2
Q ss_pred HHHHHHHhHhhhhhhccccccccc
Q 025409 190 LLFMAAASYYHYLNFLGYDVLPFL 213 (253)
Q Consensus 190 tLylia~~yY~YiTFLGY~~LPFL 213 (253)
..-.++..|+.|+.|+|=...=-+
T Consensus 127 ~~~~~~~~~~~~Lly~Gv~~~~~i 150 (170)
T PF06930_consen 127 LVGLIALIYSVYLLYLGVPIFMNI 150 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 445567778888877776655555
Done!