Query 025409
Match_columns 253
No_of_seqs 110 out of 156
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 09:41:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkr_A Calcium release-activat 30.1 33 0.0011 30.2 3.1 58 175-233 110-167 (214)
2 1g1p_A Conotoxin EVIA; three d 17.7 42 0.0014 21.0 0.9 13 204-216 6-18 (33)
3 3pcv_A Leukotriene C4 synthase 15.5 4.3E+02 0.015 21.3 6.8 92 24-133 44-136 (156)
4 2lom_A HIG1 domain family memb 14.8 53 0.0018 25.1 0.0 67 66-134 21-90 (93)
5 4b19_A PEPA1; toxin, toxin apo 10.6 1.6E+02 0.0055 18.3 2.1 18 113-130 10-27 (30)
6 3rvy_A ION transport protein; 10.0 2.1E+02 0.007 24.3 3.4 46 79-124 186-236 (285)
7 1dsq_A Nucleic acid binding pr 9.9 89 0.003 18.0 0.7 11 64-74 10-20 (26)
8 2lon_A HIG1 domain family memb 12.6 67 0.0023 24.8 0.0 68 66-135 22-92 (99)
9 1x4r_A PARP14 protein; WWE dom 8.5 1.2E+02 0.004 23.5 1.1 8 144-151 25-32 (99)
10 2i8b_A Minor nucleoprotein VP3 8.3 1.2E+02 0.0041 25.0 1.1 22 22-43 87-108 (152)
No 1
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=30.12 E-value=33 Score=30.15 Aligned_cols=58 Identities=16% Similarity=0.195 Sum_probs=48.1
Q ss_pred HHhhccchHHHHHHHHHHHHHHhHhhhhhhcccccccccccceehhhhHHHHHHHHHHH
Q 025409 175 PLLMVHGFIPVLLSNLLFMAAASYYHYLNFLGYDVLPFLERTTFFLYPIGVCIVLSPIL 233 (253)
Q Consensus 175 Pll~~~~~~s~~~gNtLylia~~yY~YiTFLGY~~LPFL~~t~~~L~Pi~~~~~l~~~s 233 (253)
.-+-..|..|+.+|=.|.++-+..-+++.|+-++.-+-.. +.+.|.|+.++++.|.+-
T Consensus 110 ~yIE~AW~fST~lGi~LFL~evall~WVKF~~~~~~aa~~-~t~vliPv~i~F~~Fa~h 167 (214)
T 4hkr_A 110 WYIETAWAFSTLLGLILFLLEIAILCWVKFYDLSRRAAWS-ATVVLIPVMIIFMAFAIH 167 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhheEEeecCCcHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999998865554 458899999998888764
No 2
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=17.71 E-value=42 Score=21.01 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=11.0
Q ss_pred hcccccccccccc
Q 025409 204 FLGYDVLPFLERT 216 (253)
Q Consensus 204 FLGY~~LPFL~~t 216 (253)
=+|+-+||.|+|-
T Consensus 6 pygfcslpilkng 18 (33)
T 1g1p_A 6 PYGFCSLPILKNG 18 (33)
T ss_dssp TTSBCCCSSSSCC
T ss_pred cccceechhhcCC
Confidence 4799999999984
No 3
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=15.47 E-value=4.3e+02 Score=21.35 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=58.0
Q ss_pred HHHHhhcCcCCchHhHHHHHHHHhcccchhhhhhheeeeccCccccCCCchHHHHHHHHHHHHHHHHHHHhcCC-hHHHH
Q 025409 24 QYLRRIIKWQQMDIEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHS-ATHAI 102 (253)
Q Consensus 24 ~~~rRl~k~~qMDfE~A~WqM~~L~~~P~kVYr~~~YrKqTKnqwaRDDPaFlvL~~~~l~issi~~~l~~~~~-~~~~~ 102 (253)
+-+.|..|-.|=+.|+.---+.-+.+.= . .+.|...-++....+++-+.|+..|..+ .+...
T Consensus 44 ~~f~Ra~RAH~N~lE~~P~fl~ll~l~~----------------l-~~~~~~a~~lg~~~~~gRily~~gY~~~~~~R~~ 106 (156)
T 3pcv_A 44 PEFERVYRAQVNCSEYFPLFLATLWVAG----------------I-FFHEGAAALCGLVYLFARLRYFQGYARSAQLRLA 106 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------H-HTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGGHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH----------------H-cCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccHH
Confidence 4567888888888887655544444321 1 1124555667777888889998888655 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 025409 103 FVVISVLLFHFLITGAMLATFCWFLTNSYLR 133 (253)
Q Consensus 103 ~~~l~~v~vdfl~~G~iiAT~~W~~~Nr~l~ 133 (253)
...+ .......+.+..+..+.+.+.+++++
T Consensus 107 G~~~-t~~~~~~L~~~~~~Gi~~~~~~~~~~ 136 (156)
T 3pcv_A 107 PLYA-SARALWLLVALAALGLLAHFLPAALR 136 (156)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3322 23445666777777788888888884
No 4
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=14.82 E-value=53 Score=25.15 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=45.4
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 025409 66 NQWARDDPAFVVICSLLLSVATIAYCA---AYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLRE 134 (253)
Q Consensus 66 nqwaRDDPaFlvL~~~~l~issi~~~l---~~~~~~~~~~~~~l~~v~vdfl~~G~iiAT~~W~~~Nr~l~~ 134 (253)
-+..++||-..+-+.. +.+.+++|+ .-+.+.....+++=+-|..-.+.++++++.+.+-..+.++.+
T Consensus 21 ~rk~ke~PlvpIg~~~--~~~vl~~Gl~~~~~rG~~~~sqklmr~RV~aQg~tV~al~~g~~ys~~~~~~~~ 90 (93)
T 2lom_A 21 IRKAKEAPFVPVGIAG--FAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYSMYREFWAK 90 (93)
Confidence 3567899977643322 233344443 223445568888888899999999999998888777777643
No 5
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=10.63 E-value=1.6e+02 Score=18.35 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 025409 113 FLITGAMLATFCWFLTNS 130 (253)
Q Consensus 113 fl~~G~iiAT~~W~~~Nr 130 (253)
-..+|.++|-.-.++.||
T Consensus 10 ~visGcivalF~hWL~~r 27 (30)
T 4b19_A 10 PVISGCAIAFFSYWLSRR 27 (30)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 457899999888888776
No 6
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=9.96 E-value=2.1e+02 Score=24.31 Aligned_cols=46 Identities=9% Similarity=0.208 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHH-----HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025409 79 CSLLLSVATIAYC-----AAYDHSATHAIFVVISVLLFHFLITGAMLATFC 124 (253)
Q Consensus 79 ~~~~l~issi~~~-----l~~~~~~~~~~~~~l~~v~vdfl~~G~iiAT~~ 124 (253)
...+.++++.+|+ =+...+.++...++.+.++.-++..++.+|++.
T Consensus 186 ~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~ 236 (285)
T 3rvy_A 186 YTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICV 236 (285)
T ss_dssp HHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556665 222233334455566666667788888888544
No 7
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=9.89 E-value=89 Score=17.96 Aligned_cols=11 Identities=18% Similarity=0.160 Sum_probs=8.6
Q ss_pred cCccccCCCch
Q 025409 64 TKNQWARDDPA 74 (253)
Q Consensus 64 TKnqwaRDDPa 74 (253)
-..|||||-|.
T Consensus 10 ~~GH~ardC~~ 20 (26)
T 1dsq_A 10 KTGHIKRDCKE 20 (26)
T ss_dssp CBSSCTTTTTC
T ss_pred CCCcccccCCC
Confidence 46899999874
No 8
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=12.56 E-value=67 Score=24.85 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=46.5
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 025409 66 NQWARDDPAFVVICSLLLSVATIAYCA---AYDHSATHAIFVVISVLLFHFLITGAMLATFCWFLTNSYLRED 135 (253)
Q Consensus 66 nqwaRDDPaFlvL~~~~l~issi~~~l---~~~~~~~~~~~~~l~~v~vdfl~~G~iiAT~~W~~~Nr~l~~~ 135 (253)
-+..++||-..+-+.. +.+.+++|+ .-+.+.....+++=+-|..-++.++++++.+.+-.-+.++.++
T Consensus 22 ~rk~ke~PlvpIg~l~--~~~vl~~Gl~~~~~rG~~~~Sqklmr~RV~AQg~tV~al~~g~~ysm~~~~~~~~ 92 (99)
T 2lon_A 22 LRKTRESPLVPIGLGG--CLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAVGAIMLGAVYTMYSDYVKRM 92 (99)
Confidence 3457889977643332 333333443 2233455688888889999999999999999988888887554
No 9
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=8.52 E-value=1.2e+02 Score=23.53 Aligned_cols=8 Identities=50% Similarity=1.032 Sum_probs=6.4
Q ss_pred CceeEEEe
Q 025409 144 QRVEWLYA 151 (253)
Q Consensus 144 ~~VEW~Ya 151 (253)
.-|||.|+
T Consensus 25 ~lVeWqY~ 32 (99)
T 1x4r_A 25 TYVEWQYI 32 (99)
T ss_dssp TSCEEEEE
T ss_pred HhhEEEEe
Confidence 34999996
No 10
>2i8b_A Minor nucleoprotein VP30; VP30 ebola virus protein, transcription, RNA binding, viral; HET: MSE; 2.00A {Zaire ebolavirus}
Probab=8.26 E-value=1.2e+02 Score=24.96 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=16.2
Q ss_pred hhHHHHhhcCcCCchHhHHHHH
Q 025409 22 FPQYLRRIIKWQQMDIEYTFWQ 43 (253)
Q Consensus 22 lp~~~rRl~k~~qMDfE~A~Wq 43 (253)
.-+.-.|+--=+.=.||.|+||
T Consensus 87 vlevYqrlHsDKGG~FEAALWQ 108 (152)
T 2i8b_A 87 VLEVYQRLHSDKGGSFEAALWQ 108 (152)
T ss_dssp HHHHHHHHHTCSSSHHHHHHHH
T ss_pred HHHHHHHHhcccCccHHHHHHh
Confidence 3345567766667889999998
Done!