Query 025409
Match_columns 253
No_of_seqs 110 out of 156
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 09:41:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025409.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025409hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g1pa_ g.3.6.1 (A:) Conotoxin 18.5 18 0.0013 21.0 0.9 13 204-216 6-18 (32)
2 d1a6bb_ g.40.1.1 (B:) Zinc fin 17.5 19 0.0014 22.2 0.9 10 64-73 18-27 (40)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 10.9 34 0.0025 20.6 0.6 26 208-233 4-29 (36)
4 d1fwxa1 b.6.1.4 (A:452-581) Ni 9.1 42 0.003 24.5 0.6 7 67-73 2-8 (132)
5 d2rm0w1 b.72.1.1 (W:1-37) Form 7.9 46 0.0034 19.8 0.3 18 56-73 17-35 (37)
6 d1cl4a_ g.40.1.1 (A:) Nucleoca 6.9 63 0.0046 19.0 0.6 9 64-72 10-18 (32)
7 d2h8aa1 f.56.1.1 (A:9-147) Mic 6.4 4.2E+02 0.031 18.6 5.5 72 22-110 56-128 (139)
8 d2dk1a1 b.72.1.1 (A:7-44) WW d 6.1 82 0.006 18.8 0.8 17 56-72 12-29 (38)
9 d1qnia1 b.6.1.4 (A:451-581) Ni 6.0 71 0.0052 23.2 0.6 7 68-74 3-9 (131)
10 d1dsva_ g.40.1.1 (A:) Nucleic 5.9 87 0.0063 18.2 0.8 9 64-72 10-18 (31)
No 1
>d1g1pa_ g.3.6.1 (A:) Conotoxin {Conus ermineus, E VIa [TaxId: 55423]}
Probab=18.50 E-value=18 Score=21.01 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=11.0
Q ss_pred hcccccccccccc
Q 025409 204 FLGYDVLPFLERT 216 (253)
Q Consensus 204 FLGY~~LPFL~~t 216 (253)
=+|+-+||.|+|-
T Consensus 6 pygfcslpilkng 18 (32)
T d1g1pa_ 6 PYGFCSLPILKNG 18 (32)
T ss_dssp TTSBCCCSSSSCC
T ss_pred cccceechhhcCC
Confidence 4799999999984
No 2
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=17.53 E-value=19 Score=22.25 Aligned_cols=10 Identities=50% Similarity=1.102 Sum_probs=8.6
Q ss_pred cCccccCCCc
Q 025409 64 TKNQWARDDP 73 (253)
Q Consensus 64 TKnqwaRDDP 73 (253)
-|.||+||=|
T Consensus 18 e~GHW~~dCP 27 (40)
T d1a6bb_ 18 EKGHWAKDCP 27 (40)
T ss_dssp CTTCCTTSCS
T ss_pred hcCchhhhCc
Confidence 4899999977
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.89 E-value=34 Score=20.63 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=19.1
Q ss_pred ccccccccceehhhhHHHHHHHHHHH
Q 025409 208 DVLPFLERTTFFLYPIGVCIVLSPIL 233 (253)
Q Consensus 208 ~~LPFL~~t~~~L~Pi~~~~~l~~~s 233 (253)
|.|-|+...-+.|.|...++++|+=+
T Consensus 4 N~Lg~iAt~LFilvPt~FLliLyvqT 29 (36)
T d2axtm1 4 NQLGLIATALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheee
Confidence 44556666677888998888888754
No 4
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}
Probab=9.09 E-value=42 Score=24.52 Aligned_cols=7 Identities=57% Similarity=1.502 Sum_probs=5.7
Q ss_pred cccCCCc
Q 025409 67 QWARDDP 73 (253)
Q Consensus 67 qwaRDDP 73 (253)
-|-||||
T Consensus 2 ~~~~~dP 8 (132)
T d1fwxa1 2 VWDRNDP 8 (132)
T ss_dssp SCCTTCG
T ss_pred ccccCCC
Confidence 3889998
No 5
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}
Probab=7.86 E-value=46 Score=19.76 Aligned_cols=18 Identities=17% Similarity=0.551 Sum_probs=12.5
Q ss_pred hhheeeecc-CccccCCCc
Q 025409 56 QHTKYHKQT-KNQWARDDP 73 (253)
Q Consensus 56 r~~~YrKqT-KnqwaRDDP 73 (253)
|..||++.| ..||-|.|.
T Consensus 17 r~YY~N~~T~~s~We~P~e 35 (37)
T d2rm0w1 17 KTYYYNNRTLESTWEKPQE 35 (37)
T ss_dssp CEEEEETTTTEEESSCCSS
T ss_pred CEEEEECCCCCEeCCCccc
Confidence 345777777 468988764
No 6
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=6.91 E-value=63 Score=18.95 Aligned_cols=9 Identities=22% Similarity=0.634 Sum_probs=6.6
Q ss_pred cCccccCCC
Q 025409 64 TKNQWARDD 72 (253)
Q Consensus 64 TKnqwaRDD 72 (253)
..+|||||=
T Consensus 10 kG~HWa~~C 18 (32)
T d1cl4a_ 10 RGKHWANEC 18 (32)
T ss_dssp SCSSCSTTC
T ss_pred CcchHHHHh
Confidence 357899983
No 7
>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.43 E-value=4.2e+02 Score=18.64 Aligned_cols=72 Identities=14% Similarity=0.023 Sum_probs=45.6
Q ss_pred hhHHHHhhcCcCCchHhHHH-HHHHHhcccchhhhhhheeeeccCccccCCCchHHHHHHHHHHHHHHHHHHHhcCChHH
Q 025409 22 FPQYLRRIIKWQQMDIEYTF-WQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLSVATIAYCAAYDHSATH 100 (253)
Q Consensus 22 lp~~~rRl~k~~qMDfE~A~-WqM~~L~~~P~kVYr~~~YrKqTKnqwaRDDPaFlvL~~~~l~issi~~~l~~~~~~~~ 100 (253)
-++..+|.-+-.+=|+|.-. +-..-++. .-.-.||......+...+++-++++++|-.+..+
T Consensus 56 ~~~~v~R~~rah~N~~E~~~~F~~~~l~~-----------------~~~~~~~~~~~~l~~~f~~~Ri~h~~~y~~~~~~ 118 (139)
T d2h8aa1 56 TDEKVERVRRAHLNDLENIVPFLGIGLLY-----------------SLSGPDLSTALIHFRIFVGARIYHTIAYLTPLPQ 118 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHT-----------------TTSCCCSTTHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred CCHHHHHHHHHHHcchhHHHHHHHHHHHH-----------------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 44566777776677777632 22222211 1123456677777778889999999999777666
Q ss_pred HHHHHHHHHH
Q 025409 101 AIFVVISVLL 110 (253)
Q Consensus 101 ~~~~~l~~v~ 110 (253)
-...+.|++.
T Consensus 119 p~R~~~~~~g 128 (139)
T d2h8aa1 119 PNRGLAFFVG 128 (139)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6777777543
No 8
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.08 E-value=82 Score=18.76 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=11.9
Q ss_pred hhheeeecc-CccccCCC
Q 025409 56 QHTKYHKQT-KNQWARDD 72 (253)
Q Consensus 56 r~~~YrKqT-KnqwaRDD 72 (253)
|.-||++.| ..||.+.|
T Consensus 12 ~~YYyN~~T~eS~We~P~ 29 (38)
T d2dk1a1 12 YHYYYDLISGASQWEKPE 29 (38)
T ss_dssp CCCEEESSSCCEESSCCT
T ss_pred CEEEEECCCCCEecCCCh
Confidence 344677887 46898876
No 9
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}
Probab=6.01 E-value=71 Score=23.18 Aligned_cols=7 Identities=43% Similarity=1.004 Sum_probs=4.9
Q ss_pred ccCCCch
Q 025409 68 WARDDPA 74 (253)
Q Consensus 68 waRDDPa 74 (253)
|-||||=
T Consensus 3 ~~~~~p~ 9 (131)
T d1qnia1 3 YERNDPY 9 (131)
T ss_dssp CCTTCGG
T ss_pred cccCCcc
Confidence 6777774
No 10
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=5.88 E-value=87 Score=18.18 Aligned_cols=9 Identities=11% Similarity=0.442 Sum_probs=6.6
Q ss_pred cCccccCCC
Q 025409 64 TKNQWARDD 72 (253)
Q Consensus 64 TKnqwaRDD 72 (253)
-.+|||||=
T Consensus 10 kG~HWa~~C 18 (31)
T d1dsva_ 10 KGYHWKSEC 18 (31)
T ss_dssp SSBSCTTTC
T ss_pred CcchHHHHh
Confidence 357899983
Done!