BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025410
MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAAATPRVQTRVAG
RGGGLGTPRSGVVRGRRNAFGSATVTRGPIGRENTPAGSAARRGRTVLPSWYPRTPLRDI
TAVVRAIERRRAHLGEVEGLQMESPMSHSQRGNDSFVPLSGAPPEHNISMMTPTPTLSVK
ACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEELNKLKRIPTAKKA
EREKRVRTLMSIR

High Scoring Gene Products

Symbol, full name Information P value
UVI4
UV-B-INSENSITIVE 4
protein from Arabidopsis thaliana 1.6e-54
UVI4-LIKE
UV-B-insensitive 4-like
protein from Arabidopsis thaliana 1.2e-49

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025410
        (253 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2060035 - symbol:UVI4 "UV-B-INSENSITIVE 4" spe...   563  1.6e-54   1
TAIR|locus:2095823 - symbol:UVI4-LIKE "UV-B-insensitive 4...   517  1.2e-49   1


>TAIR|locus:2060035 [details] [associations]
            symbol:UVI4 "UV-B-INSENSITIVE 4" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0010091 "trichome branching" evidence=IMP] [GO:0042023 "DNA
            endoreduplication" evidence=IMP] [GO:0010224 "response to UV-B"
            evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
            EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC002561 GO:GO:0010091
            GO:GO:0010224 GO:GO:0042023 EMBL:BT005212 EMBL:AK227846
            IPI:IPI00547536 PIR:T00935 RefSeq:NP_181755.1 UniGene:At.42734
            IntAct:O48533 STRING:O48533 EnsemblPlants:AT2G42260.1 GeneID:818827
            KEGG:ath:AT2G42260 TAIR:At2g42260 eggNOG:NOG235954
            HOGENOM:HOG000029128 InParanoid:O48533 OMA:NSVLPSW PhylomeDB:O48533
            ProtClustDB:CLSN2683913 Genevestigator:O48533 Uniprot:O48533
        Length = 259

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 136/262 (51%), Positives = 161/262 (61%)

Query:     1 MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAA-ATPRVQTXXX 59
             MPEARDR+ R VD    F  RR    GIL DEP +  N  GSP+ R  + AT  + +   
Sbjct:     1 MPEARDRIERQVDYPAAFLNRRSH--GILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQ 58

Query:    60 XXXXXXXXXXXXXXRGRRNAFG--SATVTRGPIGRENTPAGSAARRGR-----TVLPSWY 112
                             RR   G       R P GREN   G   RRGR     +VLPSWY
Sbjct:    59 GSMTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQGRENMSLG-VTRRGRARASNSVLPSWY 117

Query:   113 PRTPLRDITAVVRAIERRRAHLGEVEGLQMESPMSHSQRGNDSFVPLSGAPPEHNISMMT 172
             PRTPLRDI+AVVRAIERRRA +GE  G  +E+P        DS VPLSGA  EH+ SM+T
Sbjct:   118 PRTPLRDISAVVRAIERRRARMGEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 177

Query:   173 PTPTLSVKA-CPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEELNKL 231
             P P++  K   PPS  KV +ILLDIT +   E ++LTP+KKLLNSIDKVEKVVMEE+ K+
Sbjct:   178 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 237

Query:   232 KRIPTAKKAEREKRVRTLMSIR 253
             K  P+AK+AEREKRVRTLMS+R
Sbjct:   238 KSTPSAKRAEREKRVRTLMSMR 259


>TAIR|locus:2095823 [details] [associations]
            symbol:UVI4-LIKE "UV-B-insensitive 4-like" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] [GO:0007088 "regulation of mitosis"
            evidence=IMP] [GO:0007113 "endomitotic cell cycle" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=RCA] [GO:0032875
            "regulation of DNA endoreduplication" evidence=RCA] [GO:0051302
            "regulation of cell division" evidence=RCA] [GO:0051510 "regulation
            of unidimensional cell growth" evidence=RCA] GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0007088 GO:GO:0007113
            GO:GO:0040020 EMBL:AL132977 UniGene:At.21178 HOGENOM:HOG000029128
            ProtClustDB:CLSN2683913 EMBL:BT004275 EMBL:BT005570 IPI:IPI00542512
            PIR:T46008 RefSeq:NP_191345.1 UniGene:At.69876 IntAct:Q9M2R1
            STRING:Q9M2R1 EnsemblPlants:AT3G57860.1 GeneID:824955
            KEGG:ath:AT3G57860 TAIR:At3g57860 eggNOG:NOG304960
            InParanoid:Q9M2R1 OMA:LLPSWYP PhylomeDB:Q9M2R1 ArrayExpress:Q9M2R1
            Genevestigator:Q9M2R1 Uniprot:Q9M2R1
        Length = 243

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 132/258 (51%), Positives = 161/258 (62%)

Query:     1 MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAAATPRVQTXXXX 60
             MPEARDR  RPVD + +FA RR+   GIL DEP+S  + + SP+       P + +    
Sbjct:     1 MPEARDRTERPVDYSTIFANRRRH--GILLDEPDSRLSLIESPVN------PDIGSIGGT 52

Query:    61 XXXXXXXXXXXXXRGRRNAFGSATVTRGPIGRENTPAGSAAR-RGRTVLPSWYPRTPLRD 119
                           G  N  G  T  R P GREN P  +A R RG  +LPSWYPRTPLRD
Sbjct:    53 GGLVRGNFTTWRP-G--NGRGGHTPFRLPQGRENMPIVTARRGRGGGLLPSWYPRTPLRD 109

Query:   120 ITAVVRAIERRR-AHLGEVEGLQMESPMSHSQRGN-DSFVPLSGAPPEHNISMMTPTPTL 177
             IT +VRAIERRR A  G  +G  +E P +H Q G  +S VPLSG   EH  SM+TP P++
Sbjct:   110 ITHIVRAIERRRGAGTGGDDGRVIEIP-THRQVGVLESPVPLSG---EHKCSMVTPGPSV 165

Query:   178 SVK-ACPPSIGKVPKILLDITNQ-AGAELESLTPQKKLLNSIDKVEKVVMEELNKLKRIP 235
               K +CPPS  KV K+LLDIT + A  E   +TP+KKLLNSIDKVEK+VM E+ KLK  P
Sbjct:   166 GFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTP 225

Query:   236 TAKKAEREKRVRTLMSIR 253
              AK+ EREKRVRTLM++R
Sbjct:   226 QAKREEREKRVRTLMTMR 243


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      253       236   0.00089  113 3  11 23  0.45    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  141 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.84u 0.13s 23.97t   Elapsed:  00:00:01
  Total cpu time:  23.84u 0.13s 23.97t   Elapsed:  00:00:01
  Start:  Fri May 10 08:01:36 2013   End:  Fri May 10 08:01:37 2013

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