BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025410
         (253 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P77894|CTPV_MYCTU Probable copper-exporting P-type ATPase V OS=Mycobacterium
           tuberculosis GN=ctpV PE=1 SV=1
          Length = 770

 Score = 32.7 bits (73), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 168 ISMMTPTPTLSVKACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEE 227
           ++ MT    + + ACP ++G      + +    GAEL  L    ++L +  K++ VV ++
Sbjct: 402 VAGMTAAVAVLIIACPCALGLATPTAIMVGTGRGAELGILVKGGEVLEASKKIDTVVFDK 461

Query: 228 LNKLKR 233
              L R
Sbjct: 462 TGTLTR 467


>sp|A9WSA8|CARB_RENSM Carbamoyl-phosphate synthase large chain OS=Renibacterium
           salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484
           / NBRC 15589 / NCIMB 2235) GN=carB PE=3 SV=1
          Length = 1106

 Score = 31.6 bits (70), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 111 WYPRTPLRDITAVVRAIERRRAHLGEVEGLQMESPMSHSQRGNDSFVPLSGAPPE 165
           ++    L D+  V+ A ER    +G    L  ++P+  +Q   D+ VP+ G PPE
Sbjct: 611 YFEPLTLEDVLEVIAAEERTGGVMGVFVQLGGQTPLKLAQDLADAGVPILGTPPE 665


>sp|Q3AUM7|YBEY_SYNS9 Endoribonuclease YbeY OS=Synechococcus sp. (strain CC9902) GN=ybeY
           PE=3 SV=1
          Length = 180

 Score = 31.2 bits (69), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 10/80 (12%)

Query: 136 EVEGLQMESPMSHSQRGNDSFVPLSGAPPEHNISMMTPTPTLSVKACPPSIGKVPKIL-- 193
           +  G+++  P++ S   +DS+VP+     +  I ++   P LS   CP  + + P++   
Sbjct: 8   DASGVEIPEPLNGSLFAHDSWVPVL----QQWIELVRSNPDLS---CPSVVRQAPEVSLG 60

Query: 194 LDITNQAG-AELESLTPQKK 212
           L  TN AG AEL S   QK 
Sbjct: 61  LHFTNDAGIAELNSQWRQKS 80


>sp|A7EC69|MSH3_SCLS1 DNA mismatch repair protein msh3 OS=Sclerotinia sclerotiorum (strain
            ATCC 18683 / 1980 / Ss-1) GN=msh3 PE=3 SV=1
          Length = 1130

 Score = 30.8 bits (68), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 13/56 (23%)

Query: 186  IGKVPKILLDITNQAGAELESLTPQKKLL-----------NSIDKVEKVV--MEEL 228
            + +VPK +LD       ELE+   QKKLL           N +D++E+++  ME+L
Sbjct: 1075 LARVPKAVLDTAASKSRELEAEVKQKKLLGLSKMISNVLENDVDQLEQLIIGMEQL 1130


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.132    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,403,893
Number of Sequences: 539616
Number of extensions: 4194021
Number of successful extensions: 14437
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 14403
Number of HSP's gapped (non-prelim): 79
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)