Query 025410
Match_columns 253
No_of_seqs 31 out of 33
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 05:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05686 Glyco_transf_90: Glyc 29.9 32 0.0007 32.7 1.8 36 188-223 358-394 (395)
2 PF03634 TCP: TCP family trans 27.6 32 0.00069 27.9 1.1 26 4-30 17-43 (138)
3 PF10691 DUF2497: Protein of u 26.3 42 0.0009 25.8 1.5 15 218-232 57-71 (73)
4 TIGR03361 VI_Rhs_Vgr type VI s 23.4 54 0.0012 31.5 2.0 42 58-99 408-453 (513)
5 TIGR01646 vgr_GE Rhs element V 22.6 53 0.0011 31.3 1.8 40 58-97 397-440 (483)
6 PRK12472 hypothetical protein; 21.8 2.5E+02 0.0054 29.0 6.2 55 4-70 399-457 (508)
7 PHA01750 hypothetical protein 18.0 82 0.0018 24.9 1.6 20 218-237 34-53 (75)
8 PF08776 VASP_tetra: VASP tetr 16.9 98 0.0021 22.0 1.7 15 220-234 12-26 (40)
9 PF13408 Zn_ribbon_recom: Reco 15.9 1.1E+02 0.0025 20.3 1.8 13 216-228 45-57 (58)
10 COG3501 VgrG Uncharacterized p 15.7 1E+02 0.0023 31.3 2.2 42 53-98 416-465 (550)
No 1
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=29.92 E-value=32 Score=32.72 Aligned_cols=36 Identities=28% Similarity=0.122 Sum_probs=25.7
Q ss_pred ccCccccccccccCCCCccc-chhhHhhhhHHHHHHH
Q 025410 188 KVPKILLDITNQAGAELESL-TPQKKLLNSIDKVEKV 223 (253)
Q Consensus 188 kv~k~~lD~s~qt~~dp~~l-tpeKKL~nSIdqVEK~ 223 (253)
+.|-...=|++..|-||+.+ .+-.+=.|+|.|||++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (395)
T PF05686_consen 358 KSPSDTDPCTMPPPYDPEELKEFLERKENVIRQVEKW 394 (395)
T ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhc
Confidence 44555557888778887776 4445557899999985
No 2
>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]. The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].
Probab=27.62 E-value=32 Score=27.91 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=17.3
Q ss_pred ccccccc-cchHHHHHHHhhcCcceeec
Q 025410 4 ARDRLVR-PVDVAVVFAQRRQGVLGILQ 30 (253)
Q Consensus 4 ardr~~~-pvd~a~~f~rr~~~~lgi~~ 30 (253)
-|||++| ++|||.-|+.= ++.||.=.
T Consensus 17 ~RdRRvRLs~~~Ar~FFdL-QDmLGfDK 43 (138)
T PF03634_consen 17 PRDRRVRLSLEIARKFFDL-QDMLGFDK 43 (138)
T ss_pred CCCCceecCHHHHHHHHHH-HHHhcCCC
Confidence 4888888 89998888732 23445533
No 3
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=26.33 E-value=42 Score=25.85 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhcc
Q 025410 218 DKVEKVVMEELNKLK 232 (253)
Q Consensus 218 dqVEK~V~~el~kLK 232 (253)
.-||++|++||.++-
T Consensus 57 ~lVErlVr~EIeRi~ 71 (73)
T PF10691_consen 57 GLVERLVREEIERIA 71 (73)
T ss_pred HHHHHHHHHHHHHHh
Confidence 347888888887763
No 4
>TIGR03361 VI_Rhs_Vgr type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.
Probab=23.38 E-value=54 Score=31.47 Aligned_cols=42 Identities=36% Similarity=0.393 Sum_probs=25.2
Q ss_pred eeccc-CCCcccccc---cccCccCCCCccccccCCCCCCCCCCcc
Q 025410 58 VAGRG-GGLGTPRSG---VVRGRRNAFGSATVTRGPIGRENTPAGS 99 (253)
Q Consensus 58 ~~grG-GgFfirR~G---~vrG~~k~lar~~~~~~~~~kEN~pp~~ 99 (253)
.+|-| |.+|++|+| +|.--.+-.-|..++-.--|.+|.||..
T Consensus 408 ~AG~~~G~~f~PrvG~EVlV~F~~GDpdrPvI~G~l~n~~~~pp~~ 453 (513)
T TIGR03361 408 WAGNGWGSVAIPRVGQEVVVDFLEGDPDRPIVTGRVYNAENMPPYS 453 (513)
T ss_pred ccCCCcccccCCCCCCEEEEEEcCCCCCCCEEEEEccCCCCCCCcc
Confidence 45555 779999997 3322222222225555567888988853
No 5
>TIGR01646 vgr_GE Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.
Probab=22.59 E-value=53 Score=31.27 Aligned_cols=40 Identities=30% Similarity=0.376 Sum_probs=23.5
Q ss_pred eeccc-CCCcccccc---cccCccCCCCccccccCCCCCCCCCC
Q 025410 58 VAGRG-GGLGTPRSG---VVRGRRNAFGSATVTRGPIGRENTPA 97 (253)
Q Consensus 58 ~~grG-GgFfirR~G---~vrG~~k~lar~~~~~~~~~kEN~pp 97 (253)
.+|-| |.+|++|+| +|.=-.+-.-|..++-.--|.+|.||
T Consensus 397 ~AG~~~G~~f~PrvG~EVlV~F~~GDpDrPvI~G~l~n~~~~~p 440 (483)
T TIGR01646 397 WAGKNWGSLAIPRVGQEVIVGFLDGDPDRPIVTGRVYNAANPPP 440 (483)
T ss_pred ccCCCccccccCCCCCEEEEEEeCCCCCCCEEEEEecCCCCCCC
Confidence 55666 889999997 33222222233255555667777776
No 6
>PRK12472 hypothetical protein; Provisional
Probab=21.79 E-value=2.5e+02 Score=29.00 Aligned_cols=55 Identities=27% Similarity=0.242 Sum_probs=32.6
Q ss_pred ccccccccchHHHHHH-HhhcCcceeecCCCCCCCCCCCCCcccccccCCcccceeecc---cCCCccccc
Q 025410 4 ARDRLVRPVDVAVVFA-QRRQGVLGILQDEPESASNPLGSPLGRAAAATPRVQTRVAGR---GGGLGTPRS 70 (253)
Q Consensus 4 ardr~~~pvd~a~~f~-rr~~~~lgi~~d~p~~~~~lf~SP~~r~~tat~~~~~~~~gr---GGgFfirR~ 70 (253)
+=||+..|-|+-.-+. +=..|--=|..|+|-+.-+ -- +|--|++-. -|||.+|..
T Consensus 399 aldri~ip~ev~~ri~~~~~p~ssiivsde~ls~et-----------~~-~tefv~~~~~~p~g~~~~r~~ 457 (508)
T PRK12472 399 ALDRITIPPEVLDRIAPTALPRSSIIVSDEPLSVET-----------NY-RTEFVAVLSDQPQGGFITRKP 457 (508)
T ss_pred hhhcccCCHHHHHhhcccccCCceEEecCCCCcccc-----------CC-cceEEEEecCCCCCCceecCC
Confidence 4589999999887766 2222212577888765433 11 443343333 388888865
No 7
>PHA01750 hypothetical protein
Probab=17.99 E-value=82 Score=24.88 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhccCCchh
Q 025410 218 DKVEKVVMEELNKLKRIPTA 237 (253)
Q Consensus 218 dqVEK~V~~el~kLKrTP~A 237 (253)
|.||.+|..||.||+-.=++
T Consensus 34 dAvkeIV~~ELdNL~~ei~~ 53 (75)
T PHA01750 34 DAVKEIVNSELDNLKTEIEE 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999866444
No 8
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=16.90 E-value=98 Score=21.99 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhccCC
Q 025410 220 VEKVVMEELNKLKRI 234 (253)
Q Consensus 220 VEK~V~~el~kLKrT 234 (253)
|=+.|++||+|+|.-
T Consensus 12 IL~EvrkEl~K~K~E 26 (40)
T PF08776_consen 12 ILEEVRKELQKVKEE 26 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445678889999864
No 9
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=15.94 E-value=1.1e+02 Score=20.30 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHH
Q 025410 216 SIDKVEKVVMEEL 228 (253)
Q Consensus 216 SIdqVEK~V~~el 228 (253)
+.|.||++|.++|
T Consensus 45 ~~~~ie~~v~~~l 57 (58)
T PF13408_consen 45 REEEIEEAVLEAL 57 (58)
T ss_pred CHHHHHHHHHHHh
Confidence 4578899998855
No 10
>COG3501 VgrG Uncharacterized protein conserved in bacteria [Function unknown]
Probab=15.68 E-value=1e+02 Score=31.28 Aligned_cols=42 Identities=33% Similarity=0.473 Sum_probs=27.6
Q ss_pred cccceeeccc-CCCcccccc------cccC-ccCCCCccccccCCCCCCCCCCc
Q 025410 53 RVQTRVAGRG-GGLGTPRSG------VVRG-RRNAFGSATVTRGPIGRENTPAG 98 (253)
Q Consensus 53 ~~~~~~~grG-GgFfirR~G------~vrG-~~k~lar~~~~~~~~~kEN~pp~ 98 (253)
|++.-.+|-| |+++|+|+| .+.| .-.| .++--.-|-+|.||.
T Consensus 416 RVaq~wAG~~~G~~~iPRiGqEVlV~Fl~GDpDrP----iV~G~~yn~~~~~P~ 465 (550)
T COG3501 416 RVAQPWAGDGWGAVAIPRIGQEVLVAFLDGDPDRP----LVTGVLYNAANSPPY 465 (550)
T ss_pred EEecccccccCCCccCCCCCCEEEEeecCCCCCCC----eEEEeecCcccCCCc
Confidence 3444467888 999999997 2333 3333 444446788888883
Done!