Query 025410
Match_columns 253
No_of_seqs 31 out of 33
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 09:42:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ien_A Putative acyl-COA hydro 26.3 49 0.0017 25.6 3.2 31 105-136 125-155 (163)
2 1y7u_A Acyl-COA hydrolase; str 22.3 36 0.0012 26.4 1.7 33 105-138 131-163 (174)
3 1use_A VAsp, vasodilator-stimu 20.8 44 0.0015 23.2 1.7 16 219-234 15-30 (45)
4 3b7k_A Acyl-coenzyme A thioest 14.9 1E+02 0.0035 26.5 3.0 33 105-138 137-169 (333)
5 1mbm_A NSP4 proteinase, chymot 13.7 22 0.00075 31.0 -1.6 12 59-70 14-25 (198)
6 2qq2_A Cytosolic acyl coenzyme 13.4 1.4E+02 0.0048 23.6 3.2 30 105-135 156-185 (193)
7 1vpm_A Acyl-COA hydrolase; NP_ 12.8 84 0.0029 24.2 1.7 31 105-136 135-165 (169)
8 3he4_B Synzip5; heterodimeric 10.5 1.3E+02 0.0044 20.7 1.8 33 210-243 5-37 (46)
9 3ih6_A Putative zinc protease; 10.2 2.1E+02 0.0072 21.4 3.1 22 216-237 96-118 (197)
10 3pvl_B Usher syndrome type-1G 10.2 1.1E+02 0.0037 24.1 1.4 18 52-69 16-37 (96)
No 1
>4ien_A Putative acyl-COA hydrolase; hot DOG fold; HET: COA GDP; 2.00A {Neisseria meningitidis}
Probab=26.32 E-value=49 Score=25.65 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHhhhcc
Q 025410 105 RTVLPSWYPRTPLRDITAVVRAIERRRAHLGE 136 (253)
Q Consensus 105 rS~LP~WYPRtPLrDIT~vv~AieRRRsRlg~ 136 (253)
.-++|.|+|.|+ .|..-...|.+||..|+..
T Consensus 125 p~~iP~~~p~t~-~e~~~~~~a~~r~~~r~~~ 155 (163)
T 4ien_A 125 PVPVPPLEILTD-RQRCRYEKAKKRRDISLQA 155 (163)
T ss_dssp ECCCCCCCCCSH-HHHHHHHHHHHHHHHHHHC
T ss_pred ceeCCccCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 458999999998 5667778888887667653
No 2
>1y7u_A Acyl-COA hydrolase; structural genomics, coenzyme A, protein structure initiative, PSI, midwest center for structural GE MCSG; HET: COA; 2.80A {Bacillus cereus} SCOP: d.38.1.1
Probab=22.28 E-value=36 Score=26.40 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHhhhcchh
Q 025410 105 RTVLPSWYPRTPLRDITAVVRAIERRRAHLGEVE 138 (253)
Q Consensus 105 rS~LP~WYPRtPLrDIT~vv~AieRRRsRlg~aa 138 (253)
..++|+|+|.|+ .|.--...|.+|++.|+....
T Consensus 131 p~~iP~~~p~t~-~e~~~~~~a~~r~~~r~~~~~ 163 (174)
T 1y7u_A 131 PVPVPRVIPDTE-EEKESHRIAVLRAEQRHIRKA 163 (174)
T ss_dssp BCCCCEEECCSH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 457999999998 566667788888777765433
No 3
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=20.83 E-value=44 Score=23.20 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhccCC
Q 025410 219 KVEKVVMEELNKLKRI 234 (253)
Q Consensus 219 qVEK~V~~el~kLKrT 234 (253)
.|=+.|++||+|+|.-
T Consensus 15 EIL~E~RkElqK~K~E 30 (45)
T 1use_A 15 ELLEEVKKELQKVKEE 30 (45)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456788999999864
No 4
>3b7k_A Acyl-coenzyme A thioesterase 12; hotdog fold, structural genomics, structural genomics consor SGC, fatty acid metabolism, hydrolase; HET: COA; 2.70A {Homo sapiens}
Probab=14.89 E-value=1e+02 Score=26.46 Aligned_cols=33 Identities=24% Similarity=0.139 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHhhhcchh
Q 025410 105 RTVLPSWYPRTPLRDITAVVRAIERRRAHLGEVE 138 (253)
Q Consensus 105 rS~LP~WYPRtPLrDIT~vv~AieRRRsRlg~aa 138 (253)
.-++|.|+|.|+- +.--.-.|.+||+.|+....
T Consensus 137 p~~vP~~~~~t~~-e~~~~~~a~~r~~~r~~~~~ 169 (333)
T 3b7k_A 137 KIHLKPVTLLTEQ-DHVEHNLAAERRKVRLQHED 169 (333)
T ss_dssp -CCCCCCCCCSHH-HHHHHHHHHHHHHHHHHCCC
T ss_pred ccCCCCcCCCCHH-HHHHHHHHHHHHHHHHHhhh
Confidence 4589999999984 44445578888777765543
No 5
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3
Probab=13.67 E-value=22 Score=31.02 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=9.1
Q ss_pred ecccCCCccccc
Q 025410 59 AGRGGGLGTPRS 70 (253)
Q Consensus 59 ~grGGgFfirR~ 70 (253)
.|.||||||-=.
T Consensus 14 ~G~GsgF~i~~~ 25 (198)
T 1mbm_A 14 YGTGSVWTRNNE 25 (198)
T ss_dssp EEEEEEEEETTE
T ss_pred CCccceEEECCC
Confidence 577889998744
No 6
>2qq2_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal domain, thioesterase, structural genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens}
Probab=13.43 E-value=1.4e+02 Score=23.63 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHhhhc
Q 025410 105 RTVLPSWYPRTPLRDITAVVRAIERRRAHLG 135 (253)
Q Consensus 105 rS~LP~WYPRtPLrDIT~vv~AieRRRsRlg 135 (253)
..++|+|+|.|+ .++--.-.|.+|+..|+.
T Consensus 156 p~piP~~~~~t~-~e~~~~~~a~~r~~~r~~ 185 (193)
T 2qq2_A 156 SLPVPQLVPETE-DEKKRFEEGKGRYLQMKA 185 (193)
T ss_dssp BCCCCCCCCCSH-HHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCCCCCH-HHHHHHHHHHHHHHHHHH
Confidence 468999999998 556666677776555543
No 7
>1vpm_A Acyl-COA hydrolase; NP_241664.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative hydrolase; HET: COA; 1.66A {Bacillus halodurans} SCOP: d.38.1.1 PDB: 3sps_A
Probab=12.82 E-value=84 Score=24.18 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHhhhcc
Q 025410 105 RTVLPSWYPRTPLRDITAVVRAIERRRAHLGE 136 (253)
Q Consensus 105 rS~LP~WYPRtPLrDIT~vv~AieRRRsRlg~ 136 (253)
..++|++++.++ .+.--...|.+||..|+..
T Consensus 135 ~~~iP~~~~~~~-~e~~~~~~a~~r~~~r~~~ 165 (169)
T 1vpm_A 135 PKPVPQVEPQTE-EEKRLYETAPARKENRKKR 165 (169)
T ss_dssp BCCCCEEECCSH-HHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 457999998776 5677777888887777653
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=10.55 E-value=1.3e+02 Score=20.73 Aligned_cols=33 Identities=39% Similarity=0.360 Sum_probs=25.0
Q ss_pred hhHhhhhHHHHHHHHHHHHhhccCCchhhhhhhh
Q 025410 210 QKKLLNSIDKVEKVVMEELNKLKRIPTAKKAERE 243 (253)
Q Consensus 210 eKKL~nSIdqVEK~V~~el~kLKrTP~AkkAe~~ 243 (253)
-|.|-|-|..+|.- ..||.|||.--+-.|||-+
T Consensus 5 vkelknyiqeleer-naelknlkehlkfakaele 37 (46)
T 3he4_B 5 VKELKNYIQELEER-NAELKNLKEHLKFAKAELE 37 (46)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hHHHHhHHHHHHHHHHHHH
Confidence 48899999999875 4679999988665556543
No 9
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=10.22 E-value=2.1e+02 Score=21.41 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHhhccCC-chh
Q 025410 216 SIDKVEKVVMEELNKLKRI-PTA 237 (253)
Q Consensus 216 SIdqVEK~V~~el~kLKrT-P~A 237 (253)
+++++++.+.+||.+|+.. .++
T Consensus 96 ~~~~~~~~i~~~l~~l~~~~it~ 118 (197)
T 3ih6_A 96 DQDKALQTLTATLESLSSKPFSQ 118 (197)
T ss_dssp CHHHHHHHHHHHHHCTTTSCCCH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCH
Confidence 5889999999999999875 444
No 10
>3pvl_B Usher syndrome type-1G protein; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Homo sapiens}
Probab=10.15 E-value=1.1e+02 Score=24.13 Aligned_cols=18 Identities=39% Similarity=0.410 Sum_probs=12.9
Q ss_pred Ccccceeecc----cCCCcccc
Q 025410 52 PRVQTRVAGR----GGGLGTPR 69 (253)
Q Consensus 52 ~~~~~~~~gr----GGgFfirR 69 (253)
|..|++||.| ||+|.+-.
T Consensus 16 PGLG~mVFrRN~~~~g~~~~~~ 37 (96)
T 3pvl_B 16 PGLGTMVFRRNYLSSGLHGLGR 37 (96)
T ss_pred CCCcceeeecchhcccccccCc
Confidence 4888888877 56677654
Done!