Query 025410
Match_columns 253
No_of_seqs 31 out of 33
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 09:43:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025410.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025410hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o60a_ c.1.10.4 (A:) 3-deoxy- 16.5 42 0.003 24.2 2.7 26 201-226 248-275 (281)
2 d1sbqa_ c.124.1.6 (A:) 5,10-me 13.4 19 0.0014 26.5 0.0 9 59-67 116-124 (164)
3 d1ez4a2 d.162.1.1 (A:163-334) 12.8 59 0.0043 23.2 2.7 25 208-232 146-170 (171)
4 d1cf7a_ a.4.5.17 (A:) Cell cyc 11.5 43 0.0031 22.7 1.4 15 114-128 40-54 (67)
5 d1wkca_ c.124.1.6 (A:) Hypothe 11.0 25 0.0018 26.1 0.0 10 59-68 120-129 (175)
6 d1t2aa_ c.2.1.2 (A:) GDP-manno 10.3 63 0.0046 24.4 2.2 18 216-233 328-346 (347)
7 d1rp3a1 a.4.13.1 (A:87-163) Si 10.1 87 0.0063 20.0 2.6 22 216-237 8-29 (77)
8 d1rg6a_ a.60.1.2 (A:) C-termin 9.1 13 0.00094 26.0 -2.2 25 210-234 23-47 (67)
9 d1sf9a_ b.34.15.1 (A:) Hypothe 9.0 63 0.0046 24.4 1.6 30 208-242 14-43 (118)
10 d1l0oc_ a.4.13.2 (C:) SigmaF { 8.6 1.3E+02 0.0097 18.6 3.0 23 215-237 12-34 (57)
No 1
>d1o60a_ c.1.10.4 (A:) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Haemophilus influenzae [TaxId: 727]}
Probab=16.51 E-value=42 Score=24.17 Aligned_cols=26 Identities=8% Similarity=0.204 Sum_probs=20.9
Q ss_pred CCCCcccchh--hHhhhhHHHHHHHHHH
Q 025410 201 GAELESLTPQ--KKLLNSIDKVEKVVME 226 (253)
Q Consensus 201 ~~dp~~ltpe--KKL~nSIdqVEK~V~~ 226 (253)
|+++..++|+ |+|.++|.+||+++..
T Consensus 248 ~D~~~Sl~p~elk~lv~~ir~ie~~iks 275 (281)
T d1o60a_ 248 CDGPSALPLSALEGFVSQMKAIDDLVKS 275 (281)
T ss_dssp SCCTTCEEGGGHHHHHHHHHHHHHHHHH
T ss_pred CchhhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 6667777666 5999999999999854
No 2
>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=13.43 E-value=19 Score=26.45 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=6.3
Q ss_pred ecccCCCcc
Q 025410 59 AGRGGGLGT 67 (253)
Q Consensus 59 ~grGGgFfi 67 (253)
.|.||||+=
T Consensus 116 LGyGgGyYD 124 (164)
T d1sbqa_ 116 LGFGKGYYD 124 (164)
T ss_dssp ECCSSCHHH
T ss_pred cccccChHH
Confidence 466899854
No 3
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}
Probab=12.78 E-value=59 Score=23.19 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=19.8
Q ss_pred chhhHhhhhHHHHHHHHHHHHhhcc
Q 025410 208 TPQKKLLNSIDKVEKVVMEELNKLK 232 (253)
Q Consensus 208 tpeKKL~nSIdqVEK~V~~el~kLK 232 (253)
.-|++|..|+++|.+.+.+-|.+||
T Consensus 146 ~E~~~l~~s~~~l~~~i~~~l~~l~ 170 (171)
T d1ez4a2 146 DELKKMQDSAATLKKVLNDGLAELE 170 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4467888899999988888777765
No 4
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.53 E-value=43 Score=22.69 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=11.5
Q ss_pred CCcchhHHHHHHHHH
Q 025410 114 RTPLRDITAVVRAIE 128 (253)
Q Consensus 114 RtPLrDIT~vv~Aie 128 (253)
+.=|-|||+|+.+|.
T Consensus 40 kRRiYDI~NVLe~ig 54 (67)
T d1cf7a_ 40 KRRIYDITNVLEGIG 54 (67)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhhhh
Confidence 344779999999874
No 5
>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]}
Probab=11.03 E-value=25 Score=26.09 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=6.9
Q ss_pred ecccCCCccc
Q 025410 59 AGRGGGLGTP 68 (253)
Q Consensus 59 ~grGGgFfir 68 (253)
.|.||||+=|
T Consensus 120 lG~G~GyYDR 129 (175)
T d1wkca_ 120 LGHGQGFYDR 129 (175)
T ss_dssp ECCSSCHHHH
T ss_pred cccCcchHHH
Confidence 3668998754
No 6
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.33 E-value=63 Score=24.36 Aligned_cols=18 Identities=17% Similarity=0.469 Sum_probs=13.9
Q ss_pred hHHH-HHHHHHHHHhhccC
Q 025410 216 SIDK-VEKVVMEELNKLKR 233 (253)
Q Consensus 216 SIdq-VEK~V~~el~kLKr 233 (253)
|+++ |++||..+|+.+|.
T Consensus 328 sl~e~i~~~I~~~~~~~k~ 346 (347)
T d1t2aa_ 328 AFDELVREMVHADVELMRT 346 (347)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 5665 99999998887763
No 7
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=10.11 E-value=87 Score=20.04 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHhhccCCchh
Q 025410 216 SIDKVEKVVMEELNKLKRIPTA 237 (253)
Q Consensus 216 SIdqVEK~V~~el~kLKrTP~A 237 (253)
.+.+|+++..+-.++|.|.|+.
T Consensus 8 ~~~ki~~a~~~L~~~lGR~Pt~ 29 (77)
T d1rp3a1 8 KERRIKEVVEKLKEKLGREPTD 29 (77)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHHHHHHHHHHHHHHHCcCCCH
Confidence 3457777777777799999998
No 8
>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.12 E-value=13 Score=26.01 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=20.9
Q ss_pred hhHhhhhHHHHHHHHHHHHhhccCC
Q 025410 210 QKKLLNSIDKVEKVVMEELNKLKRI 234 (253)
Q Consensus 210 eKKL~nSIdqVEK~V~~el~kLKrT 234 (253)
.-+=+.||.|+|..-+|+|++||=.
T Consensus 23 ~~q~l~~v~qLe~~sleDL~~mkIp 47 (67)
T d1rg6a_ 23 TTQGLTTIYQIEHYSMDDLASLKIP 47 (67)
T ss_dssp HHHTCCSGGGGSSCCHHHHHTTTCC
T ss_pred HHccchhHHHHhhcCHHHHHcCcCc
Confidence 3556789999999999999999644
No 9
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis [TaxId: 1423]}
Probab=9.00 E-value=63 Score=24.39 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=21.5
Q ss_pred chhhHhhhhHHHHHHHHHHHHhhccCCchhhhhhh
Q 025410 208 TPQKKLLNSIDKVEKVVMEELNKLKRIPTAKKAER 242 (253)
Q Consensus 208 tpeKKL~nSIdqVEK~V~~el~kLKrTP~AkkAe~ 242 (253)
.|||++|.-. |-.+++|++.||+ ||+|||.
T Consensus 14 ~m~krySeMs---~~EL~~EIa~L~E--KaRKAEq 43 (118)
T d1sf9a_ 14 AMEKRYSQMT---PHELNTEIALLSE--KARKAEQ 43 (118)
T ss_dssp HHHHHHHTCC---HHHHHHHHHHHHH--HHHHHHH
T ss_pred hhhHHHHhcC---HHHHHHHHHHHHH--HHHHHHH
Confidence 4788887644 3467888999986 6777764
No 10
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.62 E-value=1.3e+02 Score=18.61 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHhhccCCchh
Q 025410 215 NSIDKVEKVVMEELNKLKRIPTA 237 (253)
Q Consensus 215 nSIdqVEK~V~~el~kLKrTP~A 237 (253)
..+.+|.++.++-.++|.|.|+.
T Consensus 12 e~~~ki~~~~~~l~q~lgRePT~ 34 (57)
T d1l0oc_ 12 EMGNKIRKAKDELSKTRGRAPTV 34 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCBH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCH
Confidence 34556666666666699999998
Done!