Query 025411
Match_columns 253
No_of_seqs 262 out of 1033
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vut_I AREA, nitrogen regulato 99.6 2.9E-16 1E-20 105.6 3.0 36 213-251 2-37 (43)
2 1gnf_A Transcription factor GA 99.6 7.3E-16 2.5E-20 105.0 3.5 37 211-250 3-39 (46)
3 3dfx_A Trans-acting T-cell-spe 99.6 1.3E-15 4.5E-20 110.2 4.0 38 210-250 5-42 (63)
4 4gat_A Nitrogen regulatory pro 99.5 3E-15 1E-19 109.2 2.9 39 210-251 7-45 (66)
5 2kae_A GATA-type transcription 99.5 1.6E-14 5.5E-19 106.7 3.6 40 210-251 6-45 (71)
6 4hc9_A Trans-acting T-cell-spe 99.3 7.5E-13 2.6E-17 106.1 3.8 38 211-251 58-95 (115)
7 4hc9_A Trans-acting T-cell-spe 99.1 1.7E-11 5.9E-16 98.2 3.0 36 211-249 4-39 (115)
8 3ogl_Q JAZ1 incomplete degron 98.3 3.4E-07 1.2E-11 52.1 2.0 19 136-154 3-21 (21)
9 3ogk_Q JAZ1 incomplete degron 98.2 3.6E-07 1.2E-11 52.7 0.9 22 139-161 1-22 (22)
10 1dl6_A Transcription factor II 65.6 2.7 9.2E-05 28.9 1.7 32 211-247 10-41 (58)
11 2lie_A CCL2 lectin; sugar bind 66.8 1.5 5.3E-05 35.7 0.0 39 65-103 25-68 (153)
12 2r9r_B Paddle chimera voltage 55.2 5.3 0.00018 38.4 2.3 15 74-88 50-64 (514)
13 2yrk_A Zinc finger homeobox pr 54.0 1.6 5.5E-05 30.2 -1.1 17 230-246 7-23 (55)
14 1pft_A TFIIB, PFTFIIBN; N-term 51.1 1.6 5.4E-05 28.8 -1.5 29 213-246 6-34 (50)
15 2e29_A ATP-dependent RNA helic 37.8 9.7 0.00033 28.6 0.8 29 75-104 53-81 (92)
16 3llq_A Aquaporin Z 2; aquapori 37.7 6.9 0.00024 34.6 0.0 8 12-19 4-11 (256)
17 4e1r_A Protein LSR2; anti-para 33.5 44 0.0015 25.0 3.8 25 76-101 46-70 (86)
18 2yrc_A Protein transport prote 32.2 12 0.0004 25.9 0.4 36 207-244 4-41 (59)
19 2ds5_A CLPX, ATP-dependent CLP 30.4 47 0.0016 22.3 3.2 38 212-251 11-48 (51)
20 3cw2_K Translation initiation 30.4 18 0.00062 29.2 1.4 32 211-245 102-133 (139)
21 3fwy_A Light-independent proto 30.3 11 0.00037 33.8 0.0 21 25-45 11-31 (314)
22 2k1p_A Zinc finger RAN-binding 30.2 17 0.0006 22.0 1.0 24 210-243 4-27 (33)
23 2olm_A Nucleoporin-like protei 29.0 26 0.00087 28.2 2.0 34 211-248 24-57 (140)
24 2d74_B Translation initiation 28.1 18 0.0006 29.6 0.9 29 213-244 105-133 (148)
25 2lcq_A Putative toxin VAPC6; P 27.2 4.3 0.00015 32.8 -3.0 34 211-252 131-164 (165)
26 2iqj_A Stromal membrane-associ 26.8 47 0.0016 26.4 3.2 36 210-249 25-60 (134)
27 2crw_A ARF GAP 3, ADP-ribosyla 26.5 45 0.0015 27.1 3.1 36 210-249 27-62 (149)
28 2owa_A Arfgap-like finger doma 25.7 44 0.0015 26.8 2.9 36 210-249 34-69 (138)
29 2crr_A Stromal membrane-associ 25.2 50 0.0017 26.5 3.1 36 210-249 27-62 (141)
30 1ovx_A ATP-dependent CLP prote 24.9 55 0.0019 23.3 2.9 37 212-250 18-54 (67)
31 1nee_A EIF-2-beta, probable tr 24.8 19 0.00065 29.0 0.5 30 212-244 102-131 (138)
32 1qyp_A RNA polymerase II; tran 24.5 7.8 0.00027 26.1 -1.6 36 211-247 14-54 (57)
33 2cr8_A MDM4 protein; ZF-ranbp 23.8 33 0.0011 23.3 1.5 21 208-230 7-27 (53)
34 3irb_A Uncharacterized protein 23.5 19 0.00066 28.8 0.4 8 213-220 62-69 (145)
35 3uau_A JLPA, surface-exposed l 23.1 21 0.00073 32.4 0.6 10 37-48 16-25 (379)
36 1k81_A EIF-2-beta, probable tr 23.0 9.1 0.00031 23.9 -1.4 28 214-244 2-29 (36)
37 3dwd_A ADP-ribosylation factor 22.8 60 0.0021 26.4 3.2 36 210-249 36-71 (147)
38 2p57_A GTPase-activating prote 22.6 44 0.0015 27.1 2.3 36 210-249 35-70 (144)
39 2b0o_E UPLC1; arfgap, structur 21.2 62 0.0021 27.9 3.2 36 210-249 40-75 (301)
40 4g68_A ABC transporter; transp 20.5 29 0.00099 31.4 0.9 11 40-52 10-20 (456)
No 1
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.60 E-value=2.9e-16 Score=105.59 Aligned_cols=36 Identities=44% Similarity=0.894 Sum_probs=32.8
Q ss_pred ccccccccccCCCCccccCCCCCcccchHHHHHHHhhhc
Q 025411 213 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR 251 (253)
Q Consensus 213 ~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~ 251 (253)
..|++|++ +.||+||+||+|+ +|||||||+|++..+
T Consensus 2 ~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCC--CCCSCCEECTTSC-EECHHHHHHHHHHSS
T ss_pred CcCCccCC--CCCCccccCCCCC-cccHHHHHHHHHhCC
Confidence 57999999 7899999999997 999999999988653
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.58 E-value=7.3e-16 Score=105.04 Aligned_cols=37 Identities=41% Similarity=0.793 Sum_probs=33.4
Q ss_pred ccccccccccccCCCCccccCCCCCcccchHHHHHHHhhh
Q 025411 211 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKV 250 (253)
Q Consensus 211 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~ 250 (253)
....|++|++ +.||+||+||+|+ +|||||||+|++..
T Consensus 3 ~~~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~ 39 (46)
T 1gnf_A 3 EARECVNCGA--TATPLWRRDRTGH-YLCNACGLYHKMNG 39 (46)
T ss_dssp CSCCCTTTCC--CCCSSCBCCTTCC-CBCSHHHHHHHHTC
T ss_pred CCCCCCCcCC--CCCCcCccCCCCC-ccchHHHHHHHHcC
Confidence 4568999999 7899999999997 99999999998864
No 3
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.56 E-value=1.3e-15 Score=110.16 Aligned_cols=38 Identities=32% Similarity=0.738 Sum_probs=34.5
Q ss_pred cccccccccccccCCCCccccCCCCCcccchHHHHHHHhhh
Q 025411 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKV 250 (253)
Q Consensus 210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~ 250 (253)
.....|.+|++ +.||+||+||+|+ +|||||||+|++..
T Consensus 5 ~~~~~C~~C~t--t~Tp~WR~gp~G~-~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 5 RAGTSCANCQT--TTTTLWRRNANGD-PVCNACGLYYKLHN 42 (63)
T ss_dssp CTTCCCTTTCC--SCCSSCCCCTTSC-CCCHHHHHHHHHHS
T ss_pred CCCCcCCCcCC--CCCCccCCCCCCC-chhhHHHHHHHHcC
Confidence 45678999999 7899999999997 99999999999864
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.52 E-value=3e-15 Score=109.24 Aligned_cols=39 Identities=44% Similarity=0.843 Sum_probs=34.8
Q ss_pred cccccccccccccCCCCccccCCCCCcccchHHHHHHHhhhc
Q 025411 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR 251 (253)
Q Consensus 210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~ 251 (253)
.....|++|++ +.||+||+||+|. +|||||||+|++..+
T Consensus 7 ~~~~~C~~C~t--~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCC--CCCSSCEEETTTE-EECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCC--CCCCcCCcCCCCC-CccHHHHHHHHHcCC
Confidence 45689999999 7899999999996 999999999998643
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.47 E-value=1.6e-14 Score=106.73 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=32.0
Q ss_pred cccccccccccccCCCCccccCCCCCcccchHHHHHHHhhhc
Q 025411 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR 251 (253)
Q Consensus 210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~ 251 (253)
.....|++|++ +.||+||+||.+..+|||||||+|++..+
T Consensus 6 ~~~~~C~nC~t--t~Tp~WRrg~~~~g~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 6 KKSFQCSNCSV--TETIRWRNIRSKEGIQCNACFIYQRKYNK 45 (71)
T ss_dssp --CCCCSSSCC--SCCSSCCCCSSSSCCCSSHHHHHHHHHHS
T ss_pred CCCCcCCccCC--CCCCccccCCCCCCccchHHHHHHHHhCC
Confidence 46689999999 78999999544444999999999998653
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.31 E-value=7.5e-13 Score=106.13 Aligned_cols=38 Identities=32% Similarity=0.718 Sum_probs=34.4
Q ss_pred ccccccccccccCCCCccccCCCCCcccchHHHHHHHhhhc
Q 025411 211 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR 251 (253)
Q Consensus 211 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~ 251 (253)
....|++|++ +.||+||+||+| ++|||||||+|++..+
T Consensus 58 ~~~~C~~C~t--~~tp~WRr~~~g-~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 58 AGTSCANCQT--TTTTLWRRNANG-DPVCNACGLYYKLHNI 95 (115)
T ss_dssp TTCCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred ccccCCCcCC--CCcceeEECCCC-CCcchHHHHHHHHhCC
Confidence 4579999999 789999999999 8999999999998754
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.12 E-value=1.7e-11 Score=98.17 Aligned_cols=36 Identities=44% Similarity=0.843 Sum_probs=31.3
Q ss_pred ccccccccccccCCCCccccCCCCCcccchHHHHHHHhh
Q 025411 211 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 249 (253)
Q Consensus 211 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~ 249 (253)
....|.||++ +.||+||+||+| .+|||||||+|++.
T Consensus 4 ~~~~C~~Cg~--~~Tp~WRr~~~g-~~lCnaCgl~~Kl~ 39 (115)
T 4hc9_A 4 MGRECVNCGA--TSTPLWRRDGTG-HYLCNACGLYHKMN 39 (115)
T ss_dssp --CCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHH
T ss_pred CCCCCCCCCC--ccCCcceECCCC-CCcCcchhhhhhhc
Confidence 4679999999 789999999999 69999999988754
No 8
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=98.26 E-value=3.4e-07 Score=52.10 Aligned_cols=19 Identities=58% Similarity=0.592 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhhcc.....
Q 025411 136 VPQRLASLIRFREKRKERN..... 154 (253)
Q Consensus 136 ~~~R~asl~Rf~eKRk~R~..... 154 (253)
+++|++||+||+||||+|+
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 3699999999999999984
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=98.18 E-value=3.6e-07 Score=52.71 Aligned_cols=22 Identities=59% Similarity=0.691 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhcccccccch....
Q 025411 139 RLASLIRFREKRKERNFEKKIRY.... 161 (253)
Q Consensus 139 R~asl~Rf~eKRk~R~~~k~~~Y.... 161 (253)
|++||+||+||||+|+..+ .+|
T Consensus 1 Rk~SLqRFleKRk~R~~~~-~PY.... 22 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK-APYxxxx 26 (26)
T ss_pred CchhHHHHHHHHHHHhhcc-CCC....
Confidence 7899999999999998876 455
No 10
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=65.56 E-value=2.7 Score=28.95 Aligned_cols=32 Identities=19% Similarity=0.480 Sum_probs=20.8
Q ss_pred ccccccccccccCCCCccccCCCCCcccchHHHHHHH
Q 025411 211 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWA 247 (253)
Q Consensus 211 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~ 247 (253)
....|..|+. ++....-..| .+.|..|||-+.
T Consensus 10 ~~~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~ 41 (58)
T 1dl6_A 10 PRVTCPNHPD----AILVEDYRAG-DMICPECGLVVG 41 (58)
T ss_dssp SCCSBTTBSS----SCCEECSSSC-CEECTTTCCEEC
T ss_pred ccccCcCCCC----CceeEeCCCC-eEEeCCCCCEEe
Confidence 3447888875 3455555556 588888887654
No 11
>2lie_A CCL2 lectin; sugar binding protein; NMR {Coprinopsis cinerea} PDB: 2liq_A*
Probab=66.81 E-value=1.5 Score=35.68 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=28.0
Q ss_pred cCCCCCCCCCCCceeEEEccEE-----EeeCCCCHHHHHHHHHH
Q 025411 65 LSDNRAVSEIGDQLTLSFQGQV-----YVFDSVSPEKVQAVLLL 103 (253)
Q Consensus 65 ~~~~~~~~~~~~QLTIfY~G~V-----~VfD~v~~eKaq~Im~l 103 (253)
+..|+-.++.+..|.|-|.|.. .-|++.+++|+=-|-..
T Consensus 25 ~I~NRV~s~~G~~lAlT~~G~~r~avtvS~~~~Sa~q~Wil~~~ 68 (153)
T 2lie_A 25 IIYNRVLSPRGEKLALTYPGRQRTPVTVSPLDGSSEQAWILRSY 68 (153)
Confidence 3456666888999999999973 34788888876544333
No 12
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=55.16 E-value=5.3 Score=38.36 Aligned_cols=15 Identities=7% Similarity=0.350 Sum_probs=9.2
Q ss_pred CCCceeEEEccEEEe
Q 025411 74 IGDQLTLSFQGQVYV 88 (253)
Q Consensus 74 ~~~QLTIfY~G~V~V 88 (253)
....++|.-+|+.+.
T Consensus 50 ~~~~v~lNVgG~~f~ 64 (514)
T 2r9r_B 50 SSERVVINISGLRFE 64 (514)
T ss_dssp -CCEEEEEETTEEEE
T ss_pred CCCEEEEEeCCEEEE
Confidence 345667777777654
No 13
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=54.00 E-value=1.6 Score=30.20 Aligned_cols=17 Identities=29% Similarity=0.950 Sum_probs=11.2
Q ss_pred cCCCCCcccchHHHHHH
Q 025411 230 RGPEGPRTLCNACGLMW 246 (253)
Q Consensus 230 ~Gp~G~~~LCNaCGl~~ 246 (253)
.+|+||++-|.-||..|
T Consensus 7 ~~~~~P~~eC~lC~vkY 23 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKY 23 (55)
T ss_dssp CCCCCCCSCCTTTTCCC
T ss_pred CCCCCCCccccccCccc
Confidence 46677777777777655
No 14
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=51.07 E-value=1.6 Score=28.77 Aligned_cols=29 Identities=24% Similarity=0.673 Sum_probs=13.9
Q ss_pred ccccccccccCCCCccccCCCCCcccchHHHHHH
Q 025411 213 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMW 246 (253)
Q Consensus 213 ~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~ 246 (253)
..|..|+. +++-..-..| ...|..|||.|
T Consensus 6 ~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~ 34 (50)
T 1pft_A 6 KVCPACES----AELIYDPERG-EIVCAKCGYVI 34 (50)
T ss_dssp CSCTTTSC----CCEEEETTTT-EEEESSSCCBC
T ss_pred EeCcCCCC----cceEEcCCCC-eEECcccCCcc
Confidence 35666653 2332222223 46666666544
No 15
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=37.83 E-value=9.7 Score=28.61 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=25.0
Q ss_pred CCceeEEEccEEEeeCCCCHHHHHHHHHHh
Q 025411 75 GDQLTLSFQGQVYVFDSVSPEKVQAVLLLL 104 (253)
Q Consensus 75 ~~QLTIfY~G~V~VfD~v~~eKaq~Im~lA 104 (253)
-..|||.=.+.-.||| ||.|.+++|+...
T Consensus 53 v~~m~l~~d~~GavFD-vP~e~~~~~~~~~ 81 (92)
T 2e29_A 53 ITRMCLLKGNMGVCFD-VPTTESERLQAEW 81 (92)
T ss_dssp CEEEEECTTSSEEEEE-EEHHHHHHHHHHC
T ss_pred hCeEEEecCCCEEEEE-CcHHHHHHHHhhC
Confidence 4578999999999998 9999999997653
No 16
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=37.68 E-value=6.9 Score=34.58 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=0.0
Q ss_pred CCCCCccc
Q 025411 12 SDEQHAIH 19 (253)
Q Consensus 12 ~~~~~~~h 19 (253)
.|+|+++|
T Consensus 4 ~~~~~~~~ 11 (256)
T 3llq_A 4 KDDDDKHH 11 (256)
T ss_dssp --------
T ss_pred cccccccc
Confidence 35566655
No 17
>4e1r_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 2.04A {Mycobacterium tuberculosis}
Probab=33.49 E-value=44 Score=24.98 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=19.7
Q ss_pred CceeEEEccEEEeeCCCCHHHHHHHH
Q 025411 76 DQLTLSFQGQVYVFDSVSPEKVQAVL 101 (253)
Q Consensus 76 ~QLTIfY~G~V~VfD~v~~eKaq~Im 101 (253)
...+..+.|..+..| ++.+.|+++-
T Consensus 46 ETV~FsLDGv~YEID-LS~~NA~kLR 70 (86)
T 4e1r_A 46 ETVEFGLDGVTYEID-LSTKNATKLR 70 (86)
T ss_dssp EEEEEEETTEEEEEE-ECHHHHHHHH
T ss_pred cEEEEEECCEEEEEE-CCHHHHHHHH
Confidence 456778899999998 8888887653
No 18
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=32.21 E-value=12 Score=25.95 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=29.6
Q ss_pred CCCcccccccc--cccccCCCCccccCCCCCcccchHHHH
Q 025411 207 GSQNQDIVCRH--CGISEKSTPMMRRGPEGPRTLCNACGL 244 (253)
Q Consensus 207 ~~~~~~~~C~~--C~~~~~~Tp~wR~Gp~G~~~LCNaCGl 244 (253)
+.+..+.+|.. |++ ---|.|+-...|.+-.||-|+.
T Consensus 4 ~~~~~pvRC~r~~Cra--ylNP~~~~~~~~~~W~C~~C~~ 41 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRA--VLNPLCQVDYRAKLWACNFCYQ 41 (59)
T ss_dssp SSCCCCCBCSCTTTCC--BCCTTSEEEGGGTEEECSSSCC
T ss_pred cCCCCCcccCCCCCCe--EECCceEEECCCCEEEcccCCC
Confidence 45667889998 998 5689999888887899999974
No 19
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=30.45 E-value=47 Score=22.28 Aligned_cols=38 Identities=24% Similarity=0.596 Sum_probs=26.1
Q ss_pred cccccccccccCCCCccccCCCCCcccchHHHHHHHhhhc
Q 025411 212 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR 251 (253)
Q Consensus 212 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~ 251 (253)
..+|+-||.+.......=.|| | ...||-|=..-..++.
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~~~~il~ 48 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLCNDIIR 48 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHHHHHHHH
T ss_pred CcEecCCCCCHHHhcccCCCC-C-CEehHHHHHHHHHHHH
Confidence 358999998654445555577 4 4899999766655543
No 20
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=30.38 E-value=18 Score=29.19 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=20.2
Q ss_pred ccccccccccccCCCCccccCCCCCcccchHHHHH
Q 025411 211 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 245 (253)
Q Consensus 211 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 245 (253)
.-..|..|+-. .|-+-+.+-. --.-|+|||-.
T Consensus 102 ~yVlC~~C~sP--dT~l~k~~r~-~~l~C~ACGa~ 133 (139)
T 3cw2_K 102 AYVECSTCKSL--DTILKKEKKS-WYIVCLACGAQ 133 (139)
T ss_dssp CCSSCCSSSSS--CCCSCSSCST-TTSSCCC----
T ss_pred HeeECCCCCCc--CcEEEEeCCe-EEEEecCCCCC
Confidence 45789999985 5777776422 24789999954
No 21
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=30.30 E-value=11 Score=33.75 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCCccCCCCCCCCCCCCCcCC
Q 025411 25 PEHELHHISNGDVMDDEHDEG 45 (253)
Q Consensus 25 ~~h~~h~~~~~~~~~~~~~~~ 45 (253)
|||+.|+.+..+.......++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ 31 (314)
T 3fwy_A 11 HHHHHHHGSPKDLTIPTGADG 31 (314)
T ss_dssp ---------------------
T ss_pred cccccccCCCCcCCCCCCCCC
Confidence 567777777776666555554
No 22
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=30.21 E-value=17 Score=22.02 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=16.2
Q ss_pred cccccccccccccCCCCccccCCCCCcccchHHH
Q 025411 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACG 243 (253)
Q Consensus 210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCG 243 (253)
...|.|..|+.. .-.|| +.||.|+
T Consensus 4 ~gDW~C~~C~~~---Nfa~R-------~~C~~C~ 27 (33)
T 2k1p_A 4 ANDWQCKTCSNV---NWARR-------SECNMCN 27 (33)
T ss_dssp SSSCBCSSSCCB---CCTTC-------SBCSSSC
T ss_pred CCCcccCCCCCc---ccccc-------ccccccC
Confidence 457899999863 33333 5788886
No 23
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=28.99 E-value=26 Score=28.22 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCccccCCCCCcccchHHHHHHHh
Q 025411 211 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWAN 248 (253)
Q Consensus 211 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k 248 (253)
....|.+|+. .-|.|=.=..| -.||-.|.-..+.
T Consensus 24 ~N~~CaDCg~---~~P~WaS~n~G-vfiC~~CsgiHR~ 57 (140)
T 2olm_A 24 HNRKCFDCDQ---RGPTYVNMTVG-SFVCTSCSGSLRG 57 (140)
T ss_dssp GGGSCTTTCS---SCCCEEETTTT-EEECHHHHHHHTT
T ss_pred CCCcCCCCCC---CCCCceeeccC-EEEchhccchhcc
Confidence 4679999997 47999998889 6899999766654
No 24
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=28.08 E-value=18 Score=29.61 Aligned_cols=29 Identities=31% Similarity=0.754 Sum_probs=19.6
Q ss_pred ccccccccccCCCCccccCCCCCcccchHHHH
Q 025411 213 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 244 (253)
Q Consensus 213 ~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl 244 (253)
..|..|+-. .|-+-+.+-. --.-|+|||-
T Consensus 105 VlC~~C~sP--dT~L~k~~r~-~~l~C~ACGa 133 (148)
T 2d74_B 105 VICPVCGSP--DTKIIKRDRF-HFLKCEACGA 133 (148)
T ss_dssp SSCSSSCCT--TCCCCBSSSS-BCCCCSSSCC
T ss_pred EECCCCCCc--CcEEEEeCCE-EEEEecCCCC
Confidence 579999984 4666665422 2367999984
No 25
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=27.18 E-value=4.3 Score=32.85 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=23.4
Q ss_pred ccccccccccccCCCCccccCCCCCcccchHHHHHHHhhhcc
Q 025411 211 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVRE 252 (253)
Q Consensus 211 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~~ 252 (253)
-..+|..||. ....+ .+.+.|-.||-..+++-||
T Consensus 131 ~~y~C~~Cg~---~~~~~-----~~~~~Cp~CG~~~~~~~~~ 164 (165)
T 2lcq_A 131 WRYVCIGCGR---KFSTL-----PPGGVCPDCGSKVKLIPRK 164 (165)
T ss_dssp CCEEESSSCC---EESSC-----CGGGBCTTTCCBEEECCCC
T ss_pred EEEECCCCCC---cccCC-----CCCCcCCCCCCcceeCCcC
Confidence 3569999996 23333 3346999999876666655
No 26
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=26.83 E-value=47 Score=26.43 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=29.9
Q ss_pred cccccccccccccCCCCccccCCCCCcccchHHHHHHHhh
Q 025411 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 249 (253)
Q Consensus 210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~ 249 (253)
+....|.+|+. .-|.|=.=..| -.||-.|.-..+..
T Consensus 25 p~N~~CaDCg~---~~P~WaS~n~G-vfiC~~CsgiHR~l 60 (134)
T 2iqj_A 25 EDNKFCADCQS---KGPRWASWNIG-VFICIRCAGIHRNL 60 (134)
T ss_dssp GGGGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHH
T ss_pred cCCCcCCcCcC---CCCCeEEecCC-EEEhHhhhHHHhcC
Confidence 46789999997 36999998899 69999998777664
No 27
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.48 E-value=45 Score=27.15 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=30.0
Q ss_pred cccccccccccccCCCCccccCCCCCcccchHHHHHHHhh
Q 025411 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 249 (253)
Q Consensus 210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~ 249 (253)
+....|.+|+. .-|.|=.=..| -.||-.|--..+..
T Consensus 27 p~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~L 62 (149)
T 2crw_A 27 PTNKVCFDCGA---KNPSWASITYG-VFLCIDCSGSHRSL 62 (149)
T ss_dssp TTTSBCSSSCC---BSCCCEETTTT-EECCHHHHHHHHHH
T ss_pred cCCCcCCCCcC---CCCCcEEeccC-EEEchhcchhhccC
Confidence 46789999997 47999998899 69999998777664
No 28
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=25.69 E-value=44 Score=26.81 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=29.8
Q ss_pred cccccccccccccCCCCccccCCCCCcccchHHHHHHHhh
Q 025411 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 249 (253)
Q Consensus 210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~ 249 (253)
+....|.+|+. .-|.|=.=..| -.||-.|.-..+..
T Consensus 34 p~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~L 69 (138)
T 2owa_A 34 PENRTCFDCES---RNPTWLSLSFA-VFICLNCSSDHRKM 69 (138)
T ss_dssp GGGGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHTT
T ss_pred cCCCcCCCCcC---CCCCeEEecCC-EEEhHhhhHHHhCC
Confidence 45679999997 36999998899 69999998777654
No 29
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.22 E-value=50 Score=26.49 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=29.6
Q ss_pred cccccccccccccCCCCccccCCCCCcccchHHHHHHHhh
Q 025411 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 249 (253)
Q Consensus 210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~ 249 (253)
+....|.+|+. .-|.|=.=..| -.||-.|.-..+..
T Consensus 27 p~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~L 62 (141)
T 2crr_A 27 EDNKYCADCEA---KGPRWASWNIG-VFICIRCAGIHRNL 62 (141)
T ss_dssp GGGSSCSSSCC---SSCCSEETTTT-EECCHHHHHHHHHH
T ss_pred ccCCcCCCCCC---CCCCeEEeccC-eEEhhhhhHhHhcC
Confidence 45679999997 46999998889 69999998776654
No 30
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=24.94 E-value=55 Score=23.29 Aligned_cols=37 Identities=22% Similarity=0.570 Sum_probs=25.7
Q ss_pred cccccccccccCCCCccccCCCCCcccchHHHHHHHhhh
Q 025411 212 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKV 250 (253)
Q Consensus 212 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~ 250 (253)
...|+-||.+.......=.|| | ...||-|=..-..++
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c~~Il 54 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLCNDII 54 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCC-C-CChhHHHHHHHHHHH
Confidence 358999998654444555577 4 489999976665554
No 31
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=24.84 E-value=19 Score=29.03 Aligned_cols=30 Identities=30% Similarity=0.731 Sum_probs=20.9
Q ss_pred cccccccccccCCCCccccCCCCCcccchHHHH
Q 025411 212 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 244 (253)
Q Consensus 212 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl 244 (253)
-..|..|+-. .|-+-+.+-. --.-|+|||-
T Consensus 102 yVlC~~C~sP--dT~l~k~~r~-~~l~C~ACGa 131 (138)
T 1nee_A 102 FVICHECNRP--DTRIIREGRI-SLLKCEACGA 131 (138)
T ss_dssp HHHHTCCSSC--SSCCEEETTT-TEEECSTTSC
T ss_pred EEECCCCCCc--CcEEEEcCCe-EEEEccCCCC
Confidence 3589999985 5777776422 2377999983
No 32
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=24.46 E-value=7.8 Score=26.09 Aligned_cols=36 Identities=31% Similarity=0.700 Sum_probs=23.6
Q ss_pred ccccccccccccCCC---CccccCCCCCc--ccchHHHHHHH
Q 025411 211 QDIVCRHCGISEKST---PMMRRGPEGPR--TLCNACGLMWA 247 (253)
Q Consensus 211 ~~~~C~~C~~~~~~T---p~wR~Gp~G~~--~LCNaCGl~~~ 247 (253)
....|..|+-.+ .+ -+||...++.. ..|..||-.|+
T Consensus 14 ~~~~Cp~Cg~~~-~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 14 TKITCPKCGNDT-AYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp EECCCTTTCCSE-EEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred eEeECCCCCCCE-EEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 357899999731 21 27887766632 57888986653
No 33
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=23.83 E-value=33 Score=23.34 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=16.4
Q ss_pred CCcccccccccccccCCCCcccc
Q 025411 208 SQNQDIVCRHCGISEKSTPMMRR 230 (253)
Q Consensus 208 ~~~~~~~C~~C~~~~~~Tp~wR~ 230 (253)
.....|.|+.|.+ ..+|+-|.
T Consensus 7 ~~eD~WkC~~C~k--~N~Pl~ry 27 (53)
T 2cr8_A 7 GSEDEWQCTECKK--FNSPSKRY 27 (53)
T ss_dssp CCSCCEECSSSCC--EECSSCCB
T ss_pred CCcceeecccccc--cCCCccch
Confidence 3457899999998 78887664
No 34
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=23.51 E-value=19 Score=28.77 Aligned_cols=8 Identities=38% Similarity=1.015 Sum_probs=4.6
Q ss_pred cccccccc
Q 025411 213 IVCRHCGI 220 (253)
Q Consensus 213 ~~C~~C~~ 220 (253)
..|.+|+.
T Consensus 62 ~~Cp~C~s 69 (145)
T 3irb_A 62 SYCEHCFV 69 (145)
T ss_dssp SEETTTTE
T ss_pred hhCcCCCC
Confidence 45666664
No 35
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=23.13 E-value=21 Score=32.42 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=1.2
Q ss_pred CCCCCCcCCCCC
Q 025411 37 VMDDEHDEGNGV 48 (253)
Q Consensus 37 ~~~~~~~~~~~~ 48 (253)
-++||.-.+ |
T Consensus 16 ~~~~~~~~a--C 25 (379)
T 3uau_A 16 HIDDDDKHM--C 25 (379)
T ss_dssp --------C--C
T ss_pred Ccchhhhhh--h
Confidence 344444444 7
No 36
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=22.96 E-value=9.1 Score=23.86 Aligned_cols=28 Identities=36% Similarity=0.857 Sum_probs=17.4
Q ss_pred cccccccccCCCCccccCCCCCcccchHHHH
Q 025411 214 VCRHCGISEKSTPMMRRGPEGPRTLCNACGL 244 (253)
Q Consensus 214 ~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl 244 (253)
.|..|+-. .|-+-+++-.= -.-|+|||-
T Consensus 2 lC~~C~~p--eT~l~~~~~~~-~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKP--DTKIIKEGRVH-LLKCMACGA 29 (36)
T ss_dssp CCSSSCSC--EEEEEEETTEE-EEEEETTTE
T ss_pred CCcCCCCC--CcEEEEeCCcE-EEEhhcCCC
Confidence 58888874 46666653111 245999983
No 37
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=22.75 E-value=60 Score=26.44 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=29.7
Q ss_pred cccccccccccccCCCCccccCCCCCcccchHHHHHHHhh
Q 025411 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 249 (253)
Q Consensus 210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~ 249 (253)
+....|.+|+. .-|.|=.=..| -.||-.|.-..+..
T Consensus 36 p~N~~CaDCga---~~P~WaS~nlG-vfiC~~CSgiHR~L 71 (147)
T 3dwd_A 36 DENNVCFECGA---FNPQWVSVTYG-IWICLECSGRHRGL 71 (147)
T ss_dssp TTTTBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHH
T ss_pred cCCCccCCCCC---CCCCeEEeccc-EeEhHhhChHHhcC
Confidence 45679999997 36999998889 69999998777664
No 38
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=22.61 E-value=44 Score=27.13 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=29.4
Q ss_pred cccccccccccccCCCCccccCCCCCcccchHHHHHHHhh
Q 025411 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 249 (253)
Q Consensus 210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~ 249 (253)
+....|.+|+. .-|.|=.=..| -.||-.|.-..+..
T Consensus 35 p~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~L 70 (144)
T 2p57_A 35 PTNKACFDCGA---KNPSWASITYG-VFLCIDCSGVHRSL 70 (144)
T ss_dssp GGGGBCTTTCC---BSCCEEEGGGT-EEECHHHHHHHHHH
T ss_pred CCCCcCCCCcC---CCCCeEEeccC-EEEhhhchHHHcCC
Confidence 45679999997 36999998888 68999998776654
No 39
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=21.18 E-value=62 Score=27.87 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=28.8
Q ss_pred cccccccccccccCCCCccccCCCCCcccchHHHHHHHhh
Q 025411 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 249 (253)
Q Consensus 210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~ 249 (253)
+....|..|+. .-|.|-.-.-| ..+|-.|--..+..
T Consensus 40 ~~n~~c~dc~~---~~p~w~s~~~g-~~~c~~cs~~hr~l 75 (301)
T 2b0o_E 40 PGNSQCCDCGA---ADPTWLSTNLG-VLTCIQCSGVHREL 75 (301)
T ss_dssp TTTTBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCCCcCCCCCC---CCCCeEEeecC-eEEcHHHHHHHHhh
Confidence 35779999997 36999999999 69999996655543
No 40
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=20.49 E-value=29 Score=31.38 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=0.0
Q ss_pred CCCcCCCCCCCCc
Q 025411 40 DEHDEGNGVGESE 52 (253)
Q Consensus 40 ~~~~~~~~~g~~~ 52 (253)
||++.. ||+++
T Consensus 10 ~~~~~~--C~s~~ 20 (456)
T 4g68_A 10 DDDDKM--CSSNN 20 (456)
T ss_dssp -------------
T ss_pred CCCccc--ccCCC
Confidence 555555 77765
Done!