BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025412
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IOF|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|B Chain B, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|C Chain C, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|D Chain D, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
Length = 208
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 22/188 (11%)
Query: 43 VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQ 102
+ + VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 1 MKVLVTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVF 45
Query: 103 TLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPI 162
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI
Sbjct: 46 GKAKEVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPI 103
Query: 163 FPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKS 222
P +++P+++I + L ++G S+ AG ++CNYV Y SL + G
Sbjct: 104 VPGA---PTAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPK 160
Query: 223 L--FVHVP 228
+ F+HVP
Sbjct: 161 MSGFIHVP 168
>pdb|2DF5|A Chain A, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|B Chain B, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|C Chain C, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|D Chain D, Crystal Structure Of Pf-Pcp(1-204)-C
Length = 213
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPAD 166
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGA 107
Query: 167 GEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSL--F 224
+++P+++I + L ++G S+ AG ++CNYV Y SL + G + F
Sbjct: 108 ---PTAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPKMSGF 164
Query: 225 VHVP 228
+HVP
Sbjct: 165 IHVP 168
>pdb|1X12|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPAD 166
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG- 106
Query: 167 GEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSL--F 224
+++P+++I + L ++G S+ AG ++ NYV Y SL + G + F
Sbjct: 107 --APTAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGF 164
Query: 225 VHVP 228
+HVP
Sbjct: 165 IHVP 168
>pdb|1Z8W|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPAD 166
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGA 107
Query: 167 GEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSL--F 224
+++P+++I + L ++G S+ AG ++ NYV Y SL + G + F
Sbjct: 108 ---PTAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGF 164
Query: 225 VHVP 228
+HVP
Sbjct: 165 IHVP 168
>pdb|1IOI|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|B Chain B, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|C Chain C, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|D Chain D, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
Length = 208
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPAD 166
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGA 107
Query: 167 GEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSL--F 224
+++P+++I + L ++G S+ AG ++ NYV Y SL + G + F
Sbjct: 108 ---PTAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGF 164
Query: 225 VHVP 228
+HVP
Sbjct: 165 IHVP 168
>pdb|1Z8T|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPAD 166
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGA 107
Query: 167 GEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSL--F 224
+++P+++I + L ++G S+ AG ++ NYV Y SL + G + F
Sbjct: 108 ---PTAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGF 164
Query: 225 VHVP 228
+HVP
Sbjct: 165 IHVP 168
>pdb|1Z8X|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPAD 166
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGA 107
Query: 167 GEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSL--F 224
+++P+++I + L ++G S+ AG ++ NYV Y SL + G + F
Sbjct: 108 ---PTAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGF 164
Query: 225 VHVP 228
+HVP
Sbjct: 165 IHVP 168
>pdb|1X10|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPAD 166
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGA 107
Query: 167 GEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSL--F 224
+++P+++I + L ++G S+ AG ++ NYV Y SL + G + F
Sbjct: 108 ---PTAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGF 164
Query: 225 VHVP 228
+HVP
Sbjct: 165 IHVP 168
>pdb|2EO8|A Chain A, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|B Chain B, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|C Chain C, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|D Chain D, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
Length = 208
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPAD 166
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGA 107
Query: 167 GEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSL--F 224
+++P+++I + L ++G S+ AG ++ NYV Y SL + G + F
Sbjct: 108 ---PTAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGF 164
Query: 225 VHVP 228
+HVP
Sbjct: 165 IHVP 168
>pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|B Chain B, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|C Chain C, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|D Chain D, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
Length = 220
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 22/186 (11%)
Query: 45 IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTL 104
+ +TGF+ F G S+NPTE I +Y +K + ++ G +L + A L + L
Sbjct: 4 VLITGFEPFGGDSKNPTEQIA----KYFDRKQIGNAMVYG--RVLPVSVKRATIELKRYL 57
Query: 105 QSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFP 164
+ E I ++ G+ + +E+ AVN R PD G++P I
Sbjct: 58 EEIKPE-----------IVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKI-E 105
Query: 165 ADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNG--TKS 222
D ++ + ++PV IT+TL G S AG ++CNYV + +L F++ G K+
Sbjct: 106 EDAPLAYM--ATLPVRAITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFSKIEGYPLKA 163
Query: 223 LFVHVP 228
F+HVP
Sbjct: 164 GFIHVP 169
>pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
pdb|1IU8|B Chain B, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
Length = 206
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 25/186 (13%)
Query: 45 IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTL 104
I +TGF+ F G +NPT IV L E + + ++G IL + A L + L
Sbjct: 3 ILLTGFEPFGGDDKNPTMDIVEALSERIPE-------VVGE--ILPVSFKRAREKLLKVL 53
Query: 105 QSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFP 164
+ R I ++ G+ G T ++E+ AVN R PD G +P+ PI
Sbjct: 54 D-----------DVRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIV- 101
Query: 165 ADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSL- 223
+G + T IP EI + K G + S AG ++CN+ Y +L + G +
Sbjct: 102 -EGGPAAYFAT-IPTREIVEEMKKNGIPAVLSYTAGTYLCNFAMYLTLHTSATKGYPKIA 159
Query: 224 -FVHVP 228
F+HVP
Sbjct: 160 GFIHVP 165
>pdb|4HPS|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|B Chain B, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|C Chain C, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|D Chain D, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
Length = 228
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEIT 183
+ G G T +E+ A+N R PD G +P P+ DG + + +P++ +
Sbjct: 88 ISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVI-VDGPAAYF--SRLPIKTMV 144
Query: 184 RTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQN--GTKSLFVHVP 228
L G S AG FVCN+V Y L + QN + F+HVP
Sbjct: 145 NALNTAGIPASVSQTAGTFVCNHVMYGLLHYLAQNTPSVRGGFIHVP 191
>pdb|4GXH|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|B Chain B, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|C Chain C, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|D Chain D, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
Length = 216
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEIT 183
+ G G T +E+ A+N R PD G +P P+ DG + + +P++
Sbjct: 67 ISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVI-VDGPAAYF--SRLPIKTXV 123
Query: 184 RTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQN--GTKSLFVHVPLF 230
L G S AG FVCN+V Y L + QN + F+HVP
Sbjct: 124 NALNTAGIPASVSQTAGTFVCNHVXYGLLHYLAQNTPSVRGGFIHVPYL 172
>pdb|3LAC|A Chain A, Crystal Structure Of Bacillus Anthracis
Pyrrolidone-Carboxylate Peptidase, Pcp
pdb|3LAC|B Chain B, Crystal Structure Of Bacillus Anthracis
Pyrrolidone-Carboxylate Peptidase, Pcp
Length = 215
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 22/189 (11%)
Query: 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQT 103
T+ +TGF F G S NP + +L E +G I+ V ++
Sbjct: 3 TVLLTGFDPFGGESINPAWEVAKSLHEKT----------IGEYKIISKQ----VPTVFHK 48
Query: 104 LQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIF 163
S + E E A I G G IE+ A+N R D G +P VP+
Sbjct: 49 SISVLKEYIEELAPEFIIC---IGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVV 105
Query: 164 PADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSL 223
E +++P + I + L ++G S AG FV N+++Y E++ TK
Sbjct: 106 E---EGPAAYWSTLPXKAIVKKLQEEGIPASVSQTAGTFVXNHLFYGLXHELEKHDTKXK 162
Query: 224 --FVHVPLF 230
F+H+P
Sbjct: 163 GGFIHIPFL 171
>pdb|2EBJ|A Chain A, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From
Thermus Thermophilus
pdb|2EBJ|B Chain B, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From
Thermus Thermophilus
Length = 192
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 45 IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPL-YQT 103
I VTGF+ F + NP++ ++ L + K + K AV P+ +
Sbjct: 2 ILVTGFEPFGSLEHNPSQALLDLLPSEVDGKPLRK----------------AVLPVDAEA 45
Query: 104 LQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIF 163
L A+ + E + +H G+ +E+ AVN F PD G + +PI
Sbjct: 46 LGEALEDLHREGPKA----VLHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPIV 101
Query: 164 PADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSL-RFAEQNGTKS 222
P G ++ PV+ + + G S AG ++CN +Y SL R E+
Sbjct: 102 PG-GPLA--LPARFPVKPVLARWREAGIPGRPSLSAGSYLCNQAFYLSLYRLPEEVPVG- 157
Query: 223 LFVHVP 228
F+H+P
Sbjct: 158 -FLHLP 162
>pdb|3GIU|A Chain A, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
pdb|3GIU|B Chain B, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
Length = 215
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 25/190 (13%)
Query: 42 AVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLY 101
A I VTGF F + NP+ V+ L + I+G+ I + L
Sbjct: 3 AXHILVTGFAPFDNQNINPSWEAVTQLED-----------IIGTHTIDKLK-------LP 44
Query: 102 QTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVP 161
+ + N + A++ + + G G E+ A+N R PD ++P
Sbjct: 45 TSFKKVDNIINKTLASNHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQA 104
Query: 162 IFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTK 221
I DG + +++PV+ T+++ +G S+ AG FVCN+ YH L + +
Sbjct: 105 IH-LDGAPAYF--SNLPVKAXTQSIINQGLPGALSNSAGTFVCNHTLYH-LGYLQDKHYP 160
Query: 222 SL---FVHVP 228
L F+HVP
Sbjct: 161 HLRFGFIHVP 170
>pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|B Chain B, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|C Chain C, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|D Chain D, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
Length = 215
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 78/201 (38%), Gaps = 25/201 (12%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
+TGF F G + NP+ V L G G +I+ L+
Sbjct: 7 LTGFDPFGGETVNPSWEAVKRL----------NGAAEGPASIVSEQVPTVFYKSLAVLRE 56
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPAD 166
AI + + I + G G + E+ A+N R PD G +P I
Sbjct: 57 AIKKHQPD-------IIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGG 109
Query: 167 GEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQN--GTKSLF 224
T +P++ I + K+G S AG FVCN+++Y + ++ + F
Sbjct: 110 ---PAAYWTGLPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGF 166
Query: 225 VHVPLFLTIDEETQMQFAASL 245
+H+P I E+T + A SL
Sbjct: 167 IHIPY---IPEQTLQKSAPSL 184
>pdb|3RNZ|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RO0|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
Length = 223
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 25/201 (12%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
+TGF F G + NP+ V L G G +I+ L+
Sbjct: 7 LTGFDPFGGETVNPSWEAVKRL----------NGAAEGPASIVSEQVPTVFYKSLAVLRE 56
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPAD 166
A+ + + I + G G + E+ A+N R PD G +P I
Sbjct: 57 AMKKHQPD-------IIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGG 109
Query: 167 GEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQN--GTKSLF 224
T +P++ I + K+G S AG FVCN+++Y + ++ + F
Sbjct: 110 ---PAAYWTGLPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGF 166
Query: 225 VHVPLFLTIDEETQMQFAASL 245
+H+P I E+T + A SL
Sbjct: 167 IHIPY---IPEQTLQKSAPSL 184
>pdb|2FI0|A Chain A, The Crystal Structure Of The Conserved Domain Protein From
Streptococcus Pneumoniae Tigr4
Length = 81
Score = 29.3 bits (64), Expect = 2.2, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 152 EMGWKPQKVPIFPAD-GEISRVRETS----IPVEEITRTLAKKGYEVITSD 197
E+G+KP P+ G +++ S P+++I RTL GYEVI D
Sbjct: 31 ELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLEANGYEVIGLD 81
>pdb|2I71|A Chain A, Crystal Structure Of A Conserved Protein Of Unknown
Function From Sulfolobus Solfataricus P2
pdb|2I71|B Chain B, Crystal Structure Of A Conserved Protein Of Unknown
Function From Sulfolobus Solfataricus P2
Length = 400
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 206 YVYYHSLRFAEQNGTKSLFV 225
Y+YYHSLR E+ G +F+
Sbjct: 126 YIYYHSLRILEKEGINEVFI 145
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 46 HVTGFKKFHGVSENPTETIVSNLREYM-----KKKGMPKGLILGSCNILETA 92
VTG H S+NP +VSN + M +K G+PK ++G +L++A
Sbjct: 100 EVTGRIMEH--SKNPIIVVVSNPLDIMTHVAWQKSGLPKERVIGMAGVLDSA 149
>pdb|1T3H|A Chain A, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|B Chain B, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|C Chain C, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
Length = 214
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 125 HFGVNSGATRFAIEQQAVNEATFRCPDEMGW 155
HFG N A ++++A+ E F P+E W
Sbjct: 53 HFGANXIAADGTLQRRALRERIFANPEEKNW 83
>pdb|1N3B|A Chain A, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|B Chain B, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|C Chain C, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
Length = 216
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 125 HFGVNSGATRFAIEQQAVNEATFRCPDEMGW 155
HFG N A ++++A+ E F P+E W
Sbjct: 53 HFGANXIAADGTLQRRALRERIFANPEEKNW 83
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 68 LREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINE-KDSESANSRRIIWVHF 126
+R ++K G P+ N L A+ + +Q A+ E D N I +H
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 127 GVNSGATRFAIEQQAVNEATFRCPDEMGWKP 157
+ GA ++ A PD GW P
Sbjct: 61 AI-CGANYSIVDFLITAGANVNSPDSHGWTP 90
>pdb|1VHL|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHT|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VIY|A Chain A, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|B Chain B, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|C Chain C, Crystal Structure Of Dephospho-Coa Kinase
Length = 218
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 125 HFGVNSGATRFAIEQQAVNEATFRCPDEMGW 155
HFG N A ++++A+ E F P+E W
Sbjct: 55 HFGANMIAADGTLQRRALRERIFANPEEKNW 85
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 100 LYQTLQSAINEKDSESANSRRIIWVHFGVNSG---------ATRFAIEQQAVNEA---TF 147
+++ L + + + NSR + + GVN G A RF E V A TF
Sbjct: 96 IFKLLTERVTTTELQLGNSRPAVLMIVGVNGGGKTTTLGKLANRFKKEGVKVLMAAGDTF 155
Query: 148 RCP--DEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCN 205
R +++ Q+ E + R ++ + + R + ++ ++V+ D +GR N
Sbjct: 156 RAAAGEQLEVWAQRTGSEIVMAEGPKPRPAAVLSQAVRRAV-EEDFDVVLCDTSGRLHTN 214
Query: 206 YVYYHSLRFAEQNGTKSL 223
Y LR ++ +K+L
Sbjct: 215 YNLMEELRGCKRAVSKAL 232
>pdb|3FCS|A Chain A, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|C Chain C, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 959
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 46 HVTGFKKF--HGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQT 103
+V GF++ + EN T ++ L MKK +L S LE AG +
Sbjct: 665 NVEGFERLICNQKKENETRVVLCELGNPMKKNAQIGIAMLVSVGNLEEAGESV------S 718
Query: 104 LQSAINEKDSESANSRRII 122
Q I K+S++ NS+ ++
Sbjct: 719 FQLQIRSKNSQNPNSKIVL 737
>pdb|1RRA|A Chain A, Ribonuclease A From Rattus Norvegicus (Common Rat)
Length = 124
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 50 FKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGH 94
FK+ H +E P+++ + + MK++GM K GSC + T H
Sbjct: 8 FKRQHMDTEGPSKSSPTYCNQMMKRQGMTK----GSCKPVNTFVH 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,169,029
Number of Sequences: 62578
Number of extensions: 283490
Number of successful extensions: 740
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 31
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)