Query 025412
Match_columns 253
No_of_seqs 122 out of 793
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3giu_A Pyrrolidone-carboxylate 100.0 5.8E-53 2E-57 367.5 14.1 189 41-250 2-202 (215)
2 3lac_A Pyrrolidone-carboxylate 100.0 3.8E-52 1.3E-56 362.4 19.1 189 43-251 2-202 (215)
3 3ro0_A Pyrrolidone-carboxylate 100.0 2.4E-52 8.1E-57 365.2 17.8 190 43-252 3-203 (223)
4 4hps_A Pyrrolidone-carboxylate 100.0 2.1E-52 7E-57 366.5 16.9 191 42-252 23-225 (228)
5 1a2z_A Pyrrolidone carboxyl pe 100.0 1.3E-51 4.6E-56 360.0 19.4 189 44-252 3-208 (220)
6 1iu8_A Pyrrolidone-carboxylate 100.0 5.6E-52 1.9E-56 359.3 16.9 186 44-252 2-199 (206)
7 4gxh_A Pyrrolidone-carboxylate 100.0 9.7E-52 3.3E-56 360.1 18.4 188 44-251 4-203 (216)
8 1x10_A Pyrrolidone-carboxylate 100.0 2.1E-51 7.1E-56 356.3 19.9 190 44-253 2-207 (208)
9 2ebj_A Pyrrolidone carboxyl pe 100.0 4.8E-52 1.7E-56 356.2 12.8 182 44-248 1-191 (192)
10 2pbq_A Molybdenum cofactor bio 45.9 51 0.0018 26.4 6.6 84 41-140 6-90 (178)
11 3pzy_A MOG; ssgcid, seattle st 31.3 1.1E+02 0.0039 24.1 6.4 79 40-139 7-87 (164)
12 4b8w_A GDP-L-fucose synthase; 30.9 73 0.0025 26.3 5.4 12 118-129 60-71 (319)
13 2is8_A Molybdopterin biosynthe 28.5 94 0.0032 24.4 5.4 80 43-141 4-85 (164)
14 3rfq_A Pterin-4-alpha-carbinol 27.2 1.6E+02 0.0055 23.8 6.7 77 42-138 32-109 (185)
15 3tva_A Xylose isomerase domain 26.9 2.5E+02 0.0086 23.0 8.2 72 179-251 53-146 (290)
16 1mkz_A Molybdenum cofactor bio 26.5 2.3E+02 0.008 22.2 8.1 78 42-140 12-91 (172)
17 1y5e_A Molybdenum cofactor bio 22.8 2.7E+02 0.0093 21.7 8.0 79 41-140 14-94 (169)
18 2kdp_A Histone deacetylase com 21.0 1.5E+02 0.0051 20.5 4.4 28 180-207 27-55 (71)
19 3ic7_A Putative transcriptiona 20.0 1.3E+02 0.0043 22.4 4.4 33 175-208 48-80 (126)
No 1
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=100.00 E-value=5.8e-53 Score=367.49 Aligned_cols=189 Identities=23% Similarity=0.352 Sum_probs=158.2
Q ss_pred CceEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCc
Q 025412 41 PAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRR 120 (253)
Q Consensus 41 ~~~~VlVTGFgPF~~~~~NPS~~i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~p 120 (253)
..++|||||||||++++.||||+++++|++.+ .++++. ...+||+|..+.. .+.+++. +.+|
T Consensus 2 ~~m~VLvTGF~PF~~~~~NPS~~~v~~L~~~i------~~~~i~-~~~lPv~~~~~~~----~l~~~i~-------~~~P 63 (215)
T 3giu_A 2 NAMHILVTGFAPFDNQNINPSWEAVTQLEDII------GTHTID-KLKLPTSFKKVDN----IINKTLA-------SNHY 63 (215)
T ss_dssp --CEEEEEEECCCTTCSCCHHHHHHHHSCSEE------TTEEEE-EEEECSCHHHHHH----HHHHHHH-------HSCC
T ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHhcccc------CCcEEE-EEEeceehHhHHH----HHHHHHH-------HhCC
Confidence 35699999999999999999999999998742 234553 3468887755433 3333333 4799
Q ss_pred cEEEEeeecCCCceeeeeEeEecCCCCCCCCCCCCCCCCccccCCCCCccccccCCCcHHHHHHHHHhCCCceEEeCCCC
Q 025412 121 IIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAG 200 (253)
Q Consensus 121 d~VIhlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~~~T~lpv~~l~~~l~~~g~~v~iS~dAG 200 (253)
|+|||+|++++|+.|++||+|+|..+|++|||+|++|.+++|.+ +||.. ++|+||+++|+++|++.|+|+++|+|||
T Consensus 64 d~Vi~vG~a~gr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~~--~~stLpv~~iv~~l~~~gipa~vS~dAG 140 (215)
T 3giu_A 64 DVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQAIHL-DGAPA--YFSNLPVKAMTQSIINQGLPGALSNSAG 140 (215)
T ss_dssp SEEEEEEECTTCCSBEEBCEEESCEECSSCCTTSCCCEEECSCT-TSCSE--EECCSCHHHHHHHHHHTTCCBCCBSCCC
T ss_pred CEEEEeccCCCCceEEEEEEEeccCCCCCCCCCCCCCCCCcccC-CCccc--cccCCCHHHHHHHHHHcCCCEEEeCCCC
Confidence 99999999999999999999999988999999999999999987 67753 5799999999999999999999999999
Q ss_pred cccchHHHHHHHHhhhhc--CCceEEEecCCCC----------CCChHHHHHHHHHHHHHHH
Q 025412 201 RFVCNYVYYHSLRFAEQN--GTKSLFVHVPLFL----------TIDEETQMQFAASLLEVLA 250 (253)
Q Consensus 201 ~YlCN~iyY~sL~~~~~~--~~~~~FVHVP~~~----------~~~~e~~~~~v~~lI~~la 250 (253)
+|||||+||+||++.+++ +.+++|||||+++ .++.|++.+.+...|+++.
T Consensus 141 ~yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~eq~~~~~~~psm~~~~~~~al~~~i~~~~ 202 (215)
T 3giu_A 141 TFVCNHTLYHLGYLQDKHYPHLRFGFIHVPYIPEQVIGKPDTPSMPLEKIVAGLTAAIEAIS 202 (215)
T ss_dssp SSHHHHHHHHHHHHHHHTCTTCEEEEEEECCCGGGGTTCTTCCCCCHHHHHHHHHHHHHTCC
T ss_pred ccccHHHHHHHHHHHHhcCCCceEEEEEeCCCHHHhccCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999997653 5799999999994 3567788888888887654
No 2
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=100.00 E-value=3.8e-52 Score=362.45 Aligned_cols=189 Identities=26% Similarity=0.394 Sum_probs=160.7
Q ss_pred eEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccE
Q 025412 43 VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRII 122 (253)
Q Consensus 43 ~~VlVTGFgPF~~~~~NPS~~i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~pd~ 122 (253)
.+|||||||||++++.||||+++++|++.+ ...+++. ...+||+|..+...+ .+++. +.+||+
T Consensus 2 ~~VLvTGF~PF~~~~~NPS~~~v~~L~~~i-----~~~~~i~-~~~lPv~y~~~~~~l----~~~~~-------~~~Pd~ 64 (215)
T 3lac_A 2 KTVLLTGFDPFGGESINPAWEVAKSLHEKT-----IGEYKII-SKQVPTVFHKSISVL----KEYIE-------ELAPEF 64 (215)
T ss_dssp EEEEEEEECCCTTCSCCHHHHHHHTTTTCE-----ETTEEEE-EEEECSSTTHHHHHH----HHHHH-------HHCCSE
T ss_pred CEEEEEecCCCCCCCCChHHHHHHHhcccc-----CCCcEEE-EEEEeeEhHHHHHHH----HHHHH-------hhCCCe
Confidence 389999999999999999999999998732 1223443 346899887654333 33333 368999
Q ss_pred EEEeeecCCCceeeeeEeEecCCCCCCCCCCCCCCCCccccCCCCCccccccCCCcHHHHHHHHHhCCCceEEeCCCCcc
Q 025412 123 WVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRF 202 (253)
Q Consensus 123 VIhlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~~~T~lpv~~l~~~l~~~g~~v~iS~dAG~Y 202 (253)
|||+|++++|+.|++||+|+|..+|++|||+|++|.+++|.+ +||.. ++|+||+++|++++++.|+|+++|+|||+|
T Consensus 65 VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~-~Gp~~--~~s~Lpv~~~v~~l~~~gipa~vS~dAG~y 141 (215)
T 3lac_A 65 IICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVE-EGPAA--YWSTLPMKAIVKKLQEEGIPASVSQTAGTF 141 (215)
T ss_dssp EEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSST-TSCSE--EECCSCHHHHHHHHHHTTCCEEEESCCCSS
T ss_pred EEEeccCCCCceEEEEEEEeccCCCcCCCcCCCCCCCCcCcC-CCCce--eecCCCHHHHHHHHHhCCCcEEEcCCCCcc
Confidence 999999999999999999999889999999999999999987 67754 579999999999999999999999999999
Q ss_pred cchHHHHHHHHhhhhc--CCceEEEecCCCC----------CCChHHHHHHHHHHHHHHHh
Q 025412 203 VCNYVYYHSLRFAEQN--GTKSLFVHVPLFL----------TIDEETQMQFAASLLEVLAT 251 (253)
Q Consensus 203 lCN~iyY~sL~~~~~~--~~~~~FVHVP~~~----------~~~~e~~~~~v~~lI~~la~ 251 (253)
||||+||+||++.+++ +.+++|||||+++ .++.|++.+.+...|+++.+
T Consensus 142 vCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~q~~~~~~~p~m~~~~~~~al~~~i~~~~~ 202 (215)
T 3lac_A 142 VCNHLFYGLMHELEKHDTKMKGGFIHIPFLPEQASNYPGQPSMSLSTIRKGIELAVEVTTT 202 (215)
T ss_dssp HHHHHHHHHHHHHGGGTTSSEEEEEEECCCHHHHTTSTTCCCCCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhcCCCceEEEEEeCCChHHhccCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999987643 5889999999985 46778888889999988765
No 3
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=100.00 E-value=2.4e-52 Score=365.21 Aligned_cols=190 Identities=23% Similarity=0.313 Sum_probs=161.6
Q ss_pred eEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccE
Q 025412 43 VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRII 122 (253)
Q Consensus 43 ~~VlVTGFgPF~~~~~NPS~~i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~pd~ 122 (253)
.+|||||||||++++.||||+++++|++.+. ..+++. ...+||+|..+.+.+ .+++. +.+||+
T Consensus 3 ~~VLvTGF~PF~~~~~NPS~~~v~~L~~~i~-----~~~~i~-~~~lPv~y~~~~~~l----~~~i~-------~~~Pd~ 65 (223)
T 3ro0_A 3 KKVLLTGFDPFGGETVNPSWEAVKRLNGAAE-----GPASIV-SEQVPTVFYKSLAVL----REAMK-------KHQPDI 65 (223)
T ss_dssp EEEEEEEECCCTTCSCCHHHHHHHHTTTCEE-----TTEEEE-EEEECSCTTHHHHHH----HHHHH-------HHCCSE
T ss_pred CEEEEEeCCCCCCCCCChHHHHHHHhccccC-----CCcEEE-EEEeeeEehhHHHHH----HHHHH-------HhCCCE
Confidence 4899999999999999999999999987421 223443 346899887654333 33333 368999
Q ss_pred EEEeeecCCCceeeeeEeEecCCCCCCCCCCCCCCCCccccCCCCCccccccCCCcHHHHHHHHHhCCCceEEeCCCCcc
Q 025412 123 WVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRF 202 (253)
Q Consensus 123 VIhlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~~~T~lpv~~l~~~l~~~g~~v~iS~dAG~Y 202 (253)
|||+|++++|+.|++||+|+|..+|++|||+|++|.+++|.+ +||.. ++|+||+++|+++|+++|+|+++|+|||+|
T Consensus 66 VihvG~aggr~~i~lEr~A~N~~d~ripDn~G~~P~d~~i~~-~Gp~a--~~stLpv~~~v~~l~~~gipa~vS~dAG~y 142 (223)
T 3ro0_A 66 IICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQ-GGPAA--YWTGLPIKRIVEEIKKEGIPAAVSYTAGTF 142 (223)
T ss_dssp EEEEEECTTCCSBEEBSEEESCBCCSSCCTTSCCCCSBCSST-TSCSE--EECCSCHHHHHHHHHHTTCCBCCBSCCCSS
T ss_pred EEEeccCCCCceEEEEEEEecCCCCCCCCCCCCCCCCCCCcC-CCCce--eecCCCHHHHHHHHHHCCCCEEEeCCCCcc
Confidence 999999999999999999999989999999999999999987 67754 579999999999999999999999999999
Q ss_pred cchHHHHHHHHhhhh--cCCceEEEecCCCC---------CCChHHHHHHHHHHHHHHHhh
Q 025412 203 VCNYVYYHSLRFAEQ--NGTKSLFVHVPLFL---------TIDEETQMQFAASLLEVLATL 252 (253)
Q Consensus 203 lCN~iyY~sL~~~~~--~~~~~~FVHVP~~~---------~~~~e~~~~~v~~lI~~la~~ 252 (253)
||||+||+||++.++ .+.+++|||||+++ .++.|++.+.+...|+++.+.
T Consensus 143 vCN~iyY~sL~~~~~~~~~~~~gFIHVP~l~eq~~~~~~psm~~~~~~~al~~~i~~~~~~ 203 (223)
T 3ro0_A 143 VCNHLFYGLMDEISRHHPHIRGGFIHIPYIPEQTLQKSAPSLSLDHITKALKIAAVTAAAH 203 (223)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEECBCGGGCSSSCCCBCCHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHhcCCCceEEEEEeCCChHHhccCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999998754 36799999999984 467788888889999888764
No 4
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=100.00 E-value=2.1e-52 Score=366.55 Aligned_cols=191 Identities=24% Similarity=0.352 Sum_probs=162.3
Q ss_pred ceEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCcc
Q 025412 42 AVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRI 121 (253)
Q Consensus 42 ~~~VlVTGFgPF~~~~~NPS~~i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~pd 121 (253)
+.+|||||||||++++.||||+++++|++.. + .++++. ...+||+|..+...+ .+++. +.+||
T Consensus 23 mk~VLvTGF~PF~g~~~NPS~~~v~~L~~~~----i-~~~~i~-~~~lPv~y~~~~~~l----~~~i~-------~~~Pd 85 (228)
T 4hps_A 23 MKTILVTAFDPFGGEAINPSWEAIKPLQGSQ----V-FGANIE-ICQIPCIFDTSLEHL----YAAVD-------KYQPE 85 (228)
T ss_dssp CEEEEEEEECCCTTCSCCHHHHHHGGGTTCE----E-TTEEEE-EEEECSSTTHHHHHH----HHHHH-------HHCCS
T ss_pred CCEEEEEeccCCCCCCCChHHHHHHHhcCcC----C-CCcEEE-EEEcceEeHHHHHHH----HHHHH-------hhCCC
Confidence 4489999999999999999999999998631 1 235553 346899887654433 33333 36899
Q ss_pred EEEEeeecCCCceeeeeEeEecCCCCCCCCCCCCCCCCccccCCCCCccccccCCCcHHHHHHHHHhCCCceEEeCCCCc
Q 025412 122 IWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGR 201 (253)
Q Consensus 122 ~VIhlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~~~T~lpv~~l~~~l~~~g~~v~iS~dAG~ 201 (253)
+|||+|++++|+.|++||+|+|..+|++|||+|++|.+++|.+ +||.. ++|+||+++|+++|++.|+|+++|+|||+
T Consensus 86 ~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~-~Gp~a--~~stLpvk~~v~~l~~~Gipa~vS~dAGt 162 (228)
T 4hps_A 86 LVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIV-DGPAA--YFSRLPIKTMVNALNTAGIPASVSQTAGT 162 (228)
T ss_dssp EEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSST-TCCSE--EECCSCHHHHHHHHHHTTCCEEEESCCCS
T ss_pred EEEEeccCCCCceEEEEEEEeccCCCCCCCcCCCCCCCCcCcC-CCCce--eeeCCCHHHHHHHHHHcCCcEEEeCCCCc
Confidence 9999999999999999999999889999999999999999997 67754 57999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhhh--cCCceEEEecCCCCC----------CChHHHHHHHHHHHHHHHhh
Q 025412 202 FVCNYVYYHSLRFAEQ--NGTKSLFVHVPLFLT----------IDEETQMQFAASLLEVLATL 252 (253)
Q Consensus 202 YlCN~iyY~sL~~~~~--~~~~~~FVHVP~~~~----------~~~e~~~~~v~~lI~~la~~ 252 (253)
|||||+||+||++..+ .+.+++|||||++++ ++.|++.+.+...|+++.+.
T Consensus 163 YvCN~iyY~sL~~~~~~~~~~~~gFIHVP~l~eq~~~~~~~psmsl~~~~~al~~~i~~~~~~ 225 (228)
T 4hps_A 163 FVCNHVMYGLLHYLAQNTPSVRGGFIHVPYLPEQAVKDGNQSSMTLMLMTLALKIAIETAWKN 225 (228)
T ss_dssp SHHHHHHHHHHHHHHHHCTTSEEEEEEECCCGGGGCSSSCCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcCCCceEEEEEcCCchHhhccCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999998754 358999999999975 66788888899999988764
No 5
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=100.00 E-value=1.3e-51 Score=360.01 Aligned_cols=189 Identities=26% Similarity=0.433 Sum_probs=159.7
Q ss_pred EEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccEE
Q 025412 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (253)
Q Consensus 44 ~VlVTGFgPF~~~~~NPS~~i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~pd~V 123 (253)
+|||||||||++++.||||+++++|++.. + .++++. ...+||+|..+...+ .+++. +.+||+|
T Consensus 3 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~~----~-~~~~i~-~~~lPv~~~~~~~~l----~~~i~-------~~~Pd~V 65 (220)
T 1a2z_A 3 KVLITGFEPFGGDSKNPTEQIAKYFDRKQ----I-GNAMVY-GRVLPVSVKRATIEL----KRYLE-------EIKPEIV 65 (220)
T ss_dssp EEEEEEECCCTTCSCCHHHHHHHHHTTCE----E-TTEEEE-EEEECSCHHHHHHHH----HHHHH-------HHCCSEE
T ss_pred EEEEeeccCCCCCCCCcHHHHHHHhhccc----C-CCeEEE-EEEEEeEHHHHHHHH----HHHHH-------HhCCCEE
Confidence 69999999999999999999999998752 1 245553 346888876544333 33332 3689999
Q ss_pred EEeeecCCCceeeeeEeEecCCCCCCCCCCCCCCCCccccCCCCCccccccCCCcHHHHHHHHHhCCCceEEeCCCCccc
Q 025412 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFV 203 (253)
Q Consensus 124 IhlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~~~T~lpv~~l~~~l~~~g~~v~iS~dAG~Yl 203 (253)
||+|++++|+.|++||+|+|.+++++|||+|++|.+++|.+ +||. .++|+||+++|+++++++|+|+++|+|||+||
T Consensus 66 i~vG~aggr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~ttLpi~~iv~~l~~~gip~~vS~~AG~yl 142 (220)
T 1a2z_A 66 INLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEE-DAPL--AYMATLPVRAITKTLRDNGIPATISYSAGTYL 142 (220)
T ss_dssp EEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSCT-TSCS--EEECCSCHHHHHHHHHHTTCCEEEESCCCSSH
T ss_pred EEecCCCCCceEEEEEEEccCCCCCcCCCCCCCCCCCCccC-CCCc--eeEcCCCHHHHHHHHHHCCCCEEEeCCCCcch
Confidence 99999999999999999999988899999999999999996 6775 36799999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhc--CCceEEEecCCCC---------------CCChHHHHHHHHHHHHHHHhh
Q 025412 204 CNYVYYHSLRFAEQN--GTKSLFVHVPLFL---------------TIDEETQMQFAASLLEVLATL 252 (253)
Q Consensus 204 CN~iyY~sL~~~~~~--~~~~~FVHVP~~~---------------~~~~e~~~~~v~~lI~~la~~ 252 (253)
|||+||+||++.+++ ++++||||||+++ .++.|+..+.+..+|+.+++.
T Consensus 143 CN~i~Y~sL~~~~~~~~~~~~gFIHVP~l~~~~~~~~~~~~~~~p~ms~e~~~~al~~~i~~~~~~ 208 (220)
T 1a2z_A 143 CNYVMFKTLHFSKIEGYPLKAGFIHVPYTPDQVVNKFFLLGKNTPSMCLEAEIKAIELAVKVSLDY 208 (220)
T ss_dssp HHHHHHHHHHHHHHHCCCSEEEEEEECCCGGGGTTCEEETTEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccCCceeEEEEeCCChhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999998654 7899999999987 356778888888888887653
No 6
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=100.00 E-value=5.6e-52 Score=359.31 Aligned_cols=186 Identities=28% Similarity=0.434 Sum_probs=157.7
Q ss_pred EEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccEE
Q 025412 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (253)
Q Consensus 44 ~VlVTGFgPF~~~~~NPS~~i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~pd~V 123 (253)
+|||||||||++++.||||++++.|++.+ +++. ...+||+|..+.+.+ .+++. +.+||+|
T Consensus 2 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~i--------~~i~-~~~lPv~~~~~~~~l----~~~~~-------~~~Pd~v 61 (206)
T 1iu8_A 2 KILLTGFEPFGGDDKNPTMDIVEALSERI--------PEVV-GEILPVSFKRAREKL----LKVLD-------DVRPDIT 61 (206)
T ss_dssp CEEEEEECCCTTCSCCHHHHHHHHHHHHC--------TTEE-EEEECSCHHHHHHHH----HHHHH-------HHCCSEE
T ss_pred EEEEEeecCCCCCCCCcHHHHHHHhccce--------eEEE-EEEEEeEHHHHHHHH----HHHHH-------HhCCCEE
Confidence 69999999999999999999999999863 1232 346888876544333 33332 3689999
Q ss_pred EEeeecCCCceeeeeEeEecCCCCCCCCCCCCCCCCccccCCCCCccccccCCCcHHHHHHHHHhCCCceEEeCCCCccc
Q 025412 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFV 203 (253)
Q Consensus 124 IhlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~~~T~lpv~~l~~~l~~~g~~v~iS~dAG~Yl 203 (253)
||+|++++|+.|++||+|+|.+++++|||+|++|.+++|.+ +||. .++|+||+++|++++++.|+|+++|+|||+||
T Consensus 62 i~vG~a~gr~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~t~Lpi~~iv~~l~~~gip~~vS~~AG~yl 138 (206)
T 1iu8_A 62 INLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVE-GGPA--AYFATIPTREIVEEMKKNGIPAVLSYTAGTYL 138 (206)
T ss_dssp EEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSST-TCCS--EEECCSCHHHHHHHHHHTTCCEEEESCCCSSH
T ss_pred EEcccCCCCceEEEEEEEecCCCCccCCCCCCCCCCCceeC-CCCc--eeEcCCCHHHHHHHHHhCCCCEEEeCCCCccH
Confidence 99999999999999999999988899999999999999996 6775 46799999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhc--CCceEEEecCCCC----------CCChHHHHHHHHHHHHHHHhh
Q 025412 204 CNYVYYHSLRFAEQN--GTKSLFVHVPLFL----------TIDEETQMQFAASLLEVLATL 252 (253)
Q Consensus 204 CN~iyY~sL~~~~~~--~~~~~FVHVP~~~----------~~~~e~~~~~v~~lI~~la~~ 252 (253)
|||+||+||++.+++ +.++||||||+++ .++.|++.+.+..+|+.++++
T Consensus 139 CN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~~~~~~~~~p~~~~~~~~~al~~~i~~~~~~ 199 (206)
T 1iu8_A 139 CNFAMYLTLHTSATKGYPKIAGFIHVPYTPDQVLEKKNTPSMSLDLEIKGVEIAIRVAQSA 199 (206)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEEEEECBCGGGCTTCTTCCBCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccCCCceEEEEcCCChhhhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999998642 3399999999987 366788888888888887764
No 7
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=100.00 E-value=9.7e-52 Score=360.09 Aligned_cols=188 Identities=25% Similarity=0.382 Sum_probs=158.8
Q ss_pred EEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccEE
Q 025412 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (253)
Q Consensus 44 ~VlVTGFgPF~~~~~NPS~~i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~pd~V 123 (253)
+|||||||||+++++||||+++++|++.. + .+.++. ...+||+|..+.+.+.+.++ +.+||+|
T Consensus 4 tVLvTGF~PF~~~~~NPS~~~v~~L~~~~----~-~~~~i~-~~~lPv~~~~~~~~l~~~i~-----------~~~Pd~v 66 (216)
T 4gxh_A 4 TILVTAFDPFGGEAINPSWEAIKPLQGSQ----V-FGANIE-ICQIPCIFDTSLEHLYAAVD-----------KYQPELV 66 (216)
T ss_dssp EEEEEEECCCTTSSSCHHHHHHGGGTTCE----E-TTEEEE-EEEECSSTTHHHHHHHHHHH-----------HHCCSEE
T ss_pred EEEEeeccCCCCCCCChhHHHHHhhhccc----C-CCceEE-EEecCccHHHHHHHHHHHHH-----------hhCCCEE
Confidence 89999999999999999999999997531 1 234553 34689998776655544444 3689999
Q ss_pred EEeeecCCCceeeeeEeEecCCCCCCCCCCCCCCCCccccCCCCCccccccCCCcHHHHHHHHHhCCCceEEeCCCCccc
Q 025412 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFV 203 (253)
Q Consensus 124 IhlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~~~T~lpv~~l~~~l~~~g~~v~iS~dAG~Yl 203 (253)
||+|++++|+.|++||+|+|..++++|||+|++|.+++|.+ +||.. ++|+||+++|+++|+++|+|+++|+|||+||
T Consensus 67 i~~G~a~gr~~i~~Er~A~N~~~~r~pDn~G~~p~~~~i~~-~gp~~--~~t~Lpv~~iv~~l~~~gipa~vS~dAG~yl 143 (216)
T 4gxh_A 67 ISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIV-DGPAA--YFSRLPIKTMVNALNTAGIPASVSQTAGTFV 143 (216)
T ss_dssp EEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCCSBCSST-TCCSE--EECCSCHHHHHHHHHHTTCCEEEESCCCSSH
T ss_pred EEeccCCCCCcceeEEEEcccCcccCCccCCCCCCCCcccC-CCchh--eecCCCHHHHHHHHHHCCCCEEEeCCCcccH
Confidence 99999999999999999999999999999999999999997 67754 5799999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhc--CCceEEEecCCCCC----------CChHHHHHHHHHHHHHHHh
Q 025412 204 CNYVYYHSLRFAEQN--GTKSLFVHVPLFLT----------IDEETQMQFAASLLEVLAT 251 (253)
Q Consensus 204 CN~iyY~sL~~~~~~--~~~~~FVHVP~~~~----------~~~e~~~~~v~~lI~~la~ 251 (253)
|||+||+||++.+++ +.++||||||++++ ++-+++.+.+...|++.++
T Consensus 144 CN~i~Y~sL~~~~~~~~~~~~gFIHVP~lpeq~~~~~~~psm~l~~~~~al~~~i~~~~~ 203 (216)
T 4gxh_A 144 CNHVMYGLLHYLAQNTPSVRGGFIHVPYLPEQAVKDGNQSSMTLMLMTLALKIAIETAWK 203 (216)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEECBCHHHHHHHSSCCBCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEEcCCChHhhccCCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 999999999987543 68999999998742 4456777777877877654
No 8
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=100.00 E-value=2.1e-51 Score=356.28 Aligned_cols=190 Identities=28% Similarity=0.413 Sum_probs=160.8
Q ss_pred EEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccEE
Q 025412 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (253)
Q Consensus 44 ~VlVTGFgPF~~~~~NPS~~i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~pd~V 123 (253)
+|||||||||++++.||||++++.|++.. + .++++. ...+||+|..+.+.+.+. +. +.+||+|
T Consensus 2 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~~----~-~~~~i~-~~~lPv~~~~~~~~l~~~----~~-------~~~pd~v 64 (208)
T 1x10_A 2 KVLVTGFEPFGGEKINPTERIAKDLDGIK----I-GDAQVF-GRVLPVVFGKAKEVLEKT----LE-------EIKPDIA 64 (208)
T ss_dssp EEEEEEECCCTTCSCCHHHHHHHHHTTCE----E-TTEEEE-EEEECSSTTHHHHHHHHH----HH-------HHCCSEE
T ss_pred EEEEEeecCCCCCCCChHHHHHHHhhccC----C-CCeEEE-EEEEeeEHHHHHHHHHHH----HH-------HhCCCEE
Confidence 79999999999999999999999998752 1 245553 346899987665444333 33 3689999
Q ss_pred EEeeecCCCceeeeeEeEecCCCCCCCCCCCCCCCCccccCCCCCccccccCCCcHHHHHHHHHhCCCceEEeCCCCccc
Q 025412 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFV 203 (253)
Q Consensus 124 IhlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~~~T~lpv~~l~~~l~~~g~~v~iS~dAG~Yl 203 (253)
||+|++++|+.|++||+|+|.+++++|||+|++|.+++|.+ +||. .++|+||+++|+++|+++|+|+++|+|||+||
T Consensus 65 i~vG~a~gr~~i~iEr~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~ttlpi~~iv~~l~~~gi~~~vS~~AG~yl 141 (208)
T 1x10_A 65 IHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVP-GAPT--AYFSTLPIKKIMKKLHERGIPAYISNSAGLYL 141 (208)
T ss_dssp EEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBCSST-TSCS--EEECCSCHHHHHHHHHHTTCCEEEESCCCSSH
T ss_pred EEecCCCCCceEEeEEEEEcCCCcccCCCCCCCCCCCceeC-CCCc--eeEcCCCHHHHHHHHHhCCCCEEEecCCCcch
Confidence 99999999999999999999988999999999999999996 6775 36799999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhc--CCceEEEecCCCCC--------------CChHHHHHHHHHHHHHHHhhC
Q 025412 204 CNYVYYHSLRFAEQN--GTKSLFVHVPLFLT--------------IDEETQMQFAASLLEVLATLC 253 (253)
Q Consensus 204 CN~iyY~sL~~~~~~--~~~~~FVHVP~~~~--------------~~~e~~~~~v~~lI~~la~~~ 253 (253)
|||+||+||++.++. +.++||||||++++ ++.|+..+.+..+|+.+++++
T Consensus 142 CN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~i~~~~~~~ 207 (208)
T 1x10_A 142 SNYVMYLSLHHSATKGYPKMSGFIHVPYIPEQIIDKIGKGQVPPSMSYEMALEAVKVAIEVALEEL 207 (208)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEEEEECBCGGGTHHHHTTSCCCCBCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhccCCCceEEEEcCCCchhhhcccCcCCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999998643 33999999998762 456777888899999888763
No 9
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=4.8e-52 Score=356.16 Aligned_cols=182 Identities=25% Similarity=0.369 Sum_probs=154.0
Q ss_pred EEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccEE
Q 025412 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (253)
Q Consensus 44 ~VlVTGFgPF~~~~~NPS~~i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~pd~V 123 (253)
+|||||||||++++.||||+++++|++.+ .++++. ...+||+ ..+.+ .+.+++. +.+||+|
T Consensus 1 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~i------~~~~i~-~~~lPv~-~~~~~----~l~~~~~-------~~~pd~v 61 (192)
T 2ebj_A 1 MILVTGFEPFGSLEHNPSQALLDLLPSEV------DGKPLR-KAVLPVD-AEALG----EALEDLH-------REGPKAV 61 (192)
T ss_dssp CEEEEEECCCTTCSCCHHHHGGGGSCSEE------TTEEEE-EEEECSC-HHHHH----HHHHHHH-------TTCCSEE
T ss_pred CEEEEeecCCCCCCCChHHHHHHHhhccc------CCcEEE-EEEeccc-ccHHH----HHHHHHH-------HhCCCEE
Confidence 59999999999999999999999998752 244553 3458887 55443 3444443 4689999
Q ss_pred EEeeecCCCceeeeeEeEecCCCCCCCCCCCCCCCCccccCCCCCccccccCCCcHHHHHHHHHhCCCceEEeCCCCccc
Q 025412 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFV 203 (253)
Q Consensus 124 IhlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~~~T~lpv~~l~~~l~~~g~~v~iS~dAG~Yl 203 (253)
||+|++++|+.|++||+|+|.++|++|||+|++|.+++|.+ +||. .++|+||+++|++++++.|+|+++|+|||+||
T Consensus 62 i~~G~a~~r~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~t~lp~~~iv~~l~~~g~p~~vS~~AG~yl 138 (192)
T 2ebj_A 62 LHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPIVP-GGPL--ALPARFPVKPVLARWREAGIPGRPSLSAGSYL 138 (192)
T ss_dssp EEEEECTTCSSEEEECEEESCBCCSSCCTTCCCCCSBCSST-TSCS--EEECBSCHHHHHHHHHHTTCCEEEESCCCSSH
T ss_pred EEeccCCCCceEEeEEEEEcCCCccCCCCCCCCCCCCceeC-CCCc--eeEcCCCHHHHHHHHHHCCCCEEEeCCCCccH
Confidence 99999999999999999999988999999999999999997 6775 46799999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhcCCceEEEecCCCCC---------CChHHHHHHHHHHHHH
Q 025412 204 CNYVYYHSLRFAEQNGTKSLFVHVPLFLT---------IDEETQMQFAASLLEV 248 (253)
Q Consensus 204 CN~iyY~sL~~~~~~~~~~~FVHVP~~~~---------~~~e~~~~~v~~lI~~ 248 (253)
|||+||+||++.+ .+.++||||||++++ ++.|++.+.+..+|+.
T Consensus 139 CN~i~Y~sL~~~~-~~~~~gFIHVP~~~~~~~~~~~p~~~~e~~~~al~~~i~~ 191 (192)
T 2ebj_A 139 CNQAFYLSLYRLP-EEVPVGFLHLPPDETLALKRPRPYVPLEVQARAVRLALEH 191 (192)
T ss_dssp HHHHHHHHHHHSC-TTSCEEEEEECCCHHHHHHSCCCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcc-CCCceEEEEeCCChhhhcccCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999886 568999999998864 5667777777776654
No 10
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=45.90 E-value=51 Score=26.41 Aligned_cols=84 Identities=7% Similarity=0.067 Sum_probs=44.4
Q ss_pred CceEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCc
Q 025412 41 PAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRR 120 (253)
Q Consensus 41 ~~~~VlVTGFgPF~~~~~NPS~~i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~p 120 (253)
-.+-|+.||=+...|.-.|.+......+-+.+...| +++ ...++| +-...+.+.+++++. ..+.
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G----~~v-~~~iv~----Dd~~~I~~~l~~~~~-------~~~~ 69 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITP----FEV-EYRVIP----DERDLIEKTLIELAD-------EKGC 69 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSC----CEE-EEEEEC----SCHHHHHHHHHHHHH-------TSCC
T ss_pred CEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCC----CEE-EEEEcC----CCHHHHHHHHHHHHh-------cCCC
Confidence 356789999998888777766444433322111333 333 333443 112233344443332 1267
Q ss_pred cEEEEeeecC-CCceeeeeEe
Q 025412 121 IIWVHFGVNS-GATRFAIEQQ 140 (253)
Q Consensus 121 d~VIhlGva~-~~~~i~lE~~ 140 (253)
|+||..|=.+ +...++.|-.
T Consensus 70 DlVittGG~g~g~~D~t~ea~ 90 (178)
T 2pbq_A 70 SLILTTGGTGPAPRDVTPEAT 90 (178)
T ss_dssp SEEEEESCCSSSTTCCHHHHH
T ss_pred CEEEECCCCCCCCCCchHHHH
Confidence 9999988644 4445555444
No 11
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=31.30 E-value=1.1e+02 Score=24.06 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=40.0
Q ss_pred CCceEEEEEcccCCCCCCCCchHHHH-HHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCC
Q 025412 40 PPAVTIHVTGFKKFHGVSENPTETIV-SNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANS 118 (253)
Q Consensus 40 ~~~~~VlVTGFgPF~~~~~NPS~~i~-~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~ 118 (253)
+..+-|+.||=+-..|.-.|.+.... ..|.+ .| .++....++| +- ..+.+.+++++. .
T Consensus 7 ~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~----~G----~~v~~~~iv~----Dd-~~i~~al~~a~~--------~ 65 (164)
T 3pzy_A 7 TRSARVIIASTRASSGEYEDRCGPIITEWLAQ----QG----FSSAQPEVVA----DG-SPVGEALRKAID--------D 65 (164)
T ss_dssp CCEEEEEEECHHHHC----CCHHHHHHHHHHH----TT----CEECCCEEEC----SS-HHHHHHHHHHHH--------T
T ss_pred CCEEEEEEECCCCCCCceeeHHHHHHHHHHHH----CC----CEEEEEEEeC----CH-HHHHHHHHHHHh--------C
Confidence 34567999998877776556554443 34432 23 3443334443 12 334444444332 3
Q ss_pred CccEEEEeeecC-CCceeeeeE
Q 025412 119 RRIIWVHFGVNS-GATRFAIEQ 139 (253)
Q Consensus 119 ~pd~VIhlGva~-~~~~i~lE~ 139 (253)
+.|+||..|=.+ +...++.|-
T Consensus 66 ~~DlVittGG~s~g~~D~t~ea 87 (164)
T 3pzy_A 66 DVDVILTSGGTGIAPTDSTPDQ 87 (164)
T ss_dssp TCSEEEEESCCSSSTTCCHHHH
T ss_pred CCCEEEECCCCCCCCCccHHHH
Confidence 578999888544 444455443
No 12
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=30.94 E-value=73 Score=26.27 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=9.5
Q ss_pred CCccEEEEeeec
Q 025412 118 SRRIIWVHFGVN 129 (253)
Q Consensus 118 ~~pd~VIhlGva 129 (253)
.++|+|||++-.
T Consensus 60 ~~~d~Vih~A~~ 71 (319)
T 4b8w_A 60 VQPTHVIHLAAM 71 (319)
T ss_dssp SCCSEEEECCCC
T ss_pred cCCCEEEECcee
Confidence 469999999753
No 13
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=28.48 E-value=94 Score=24.37 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=42.8
Q ss_pred eEEEEEcccCCCCCCCCchHH-HHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCcc
Q 025412 43 VTIHVTGFKKFHGVSENPTET-IVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRI 121 (253)
Q Consensus 43 ~~VlVTGFgPF~~~~~NPS~~-i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~pd 121 (253)
+-|+.||=+-..+.-.|.+.. +++.|. .. +.++....++| +-...+.+.+++++. ..+.|
T Consensus 4 v~Ii~tGdEl~~G~i~D~n~~~l~~~l~----~~----G~~v~~~~iv~----Dd~~~i~~~l~~~~~-------~~~~D 64 (164)
T 2is8_A 4 VGILTVSDKGFRGERQDTTHLAIREVLA----GG----PFEVAAYELVP----DEPPMIKKVLRLWAD-------REGLD 64 (164)
T ss_dssp EEEEEECHHHHHTSSCCCHHHHHHHHHT----TS----SEEEEEEEEEC----SCHHHHHHHHHHHHH-------TSCCS
T ss_pred EEEEEEcCcccCCCcccchHHHHHHHHH----HC----CCeEeEEEEcC----CCHHHHHHHHHHHHh-------cCCCC
Confidence 468999998777766665543 344442 22 34443333443 122233344443332 12578
Q ss_pred EEEEeeecC-CCceeeeeEeE
Q 025412 122 IWVHFGVNS-GATRFAIEQQA 141 (253)
Q Consensus 122 ~VIhlGva~-~~~~i~lE~~A 141 (253)
+||..|=.+ +...++.|-.+
T Consensus 65 lVittGG~g~g~~D~t~ea~~ 85 (164)
T 2is8_A 65 LILTNGGTGLAPRDRTPEATR 85 (164)
T ss_dssp EEEEESCCSSSTTCCHHHHHH
T ss_pred EEEEcCCCCCCCCCChHHHHH
Confidence 999988654 55556655543
No 14
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=27.24 E-value=1.6e+02 Score=23.83 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=40.0
Q ss_pred ceEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCcc
Q 025412 42 AVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRI 121 (253)
Q Consensus 42 ~~~VlVTGFgPF~~~~~NPS~~i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~pd 121 (253)
.+-|+.||=+-..+. .|.+......+-+ ..| .++....++| +-...+.+.+++++. .+.|
T Consensus 32 rvaIistGdEl~~G~-~Dsn~~~L~~~L~---~~G----~~v~~~~iv~----Dd~~~I~~al~~a~~--------~~~D 91 (185)
T 3rfq_A 32 RALVVVVDDRTAHGD-EDHSGPLVTELLT---EAG----FVVDGVVAVE----ADEVDIRNALNTAVI--------GGVD 91 (185)
T ss_dssp EEEEEEECHHHHTTC-CCSHHHHHHHHHH---HTT----EEEEEEEEEC----SCHHHHHHHHHHHHH--------TTCS
T ss_pred EEEEEEECcccCCCC-cCcHHHHHHHHHH---HCC----CEEEEEEEeC----CCHHHHHHHHHHHHh--------CCCC
Confidence 356899998776666 6665554444332 223 3443444444 112223333433321 3578
Q ss_pred EEEEeeecC-CCceeeee
Q 025412 122 IWVHFGVNS-GATRFAIE 138 (253)
Q Consensus 122 ~VIhlGva~-~~~~i~lE 138 (253)
+||..|=.+ +...++.|
T Consensus 92 lVIttGGts~g~~D~t~e 109 (185)
T 3rfq_A 92 LVVSVGGTGVTPRDVTPE 109 (185)
T ss_dssp EEEEESCCSSSTTCCHHH
T ss_pred EEEECCCCCCCCcccHHH
Confidence 999888644 44444444
No 15
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=26.91 E-value=2.5e+02 Score=23.01 Aligned_cols=72 Identities=13% Similarity=0.083 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCceEEeC-C-CCcccchH--------------------HHHHHHHhhhhcCCceEEEecCCCCCCChH
Q 025412 179 VEEITRTLAKKGYEVITSD-D-AGRFVCNY--------------------VYYHSLRFAEQNGTKSLFVHVPLFLTIDEE 236 (253)
Q Consensus 179 v~~l~~~l~~~g~~v~iS~-d-AG~YlCN~--------------------iyY~sL~~~~~~~~~~~FVHVP~~~~~~~e 236 (253)
++++.+.+++.|+.+..-. . .|.++.|. .+=+.+..++.-+.+.+-+|....+.. .+
T Consensus 53 ~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~-~~ 131 (290)
T 3tva_A 53 AQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHIGFVPES-SS 131 (290)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCT-TS
T ss_pred HHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCccc-ch
Confidence 6788999999999875432 1 35544543 223334444445788888886544322 22
Q ss_pred HHHHHHHHHHHHHHh
Q 025412 237 TQMQFAASLLEVLAT 251 (253)
Q Consensus 237 ~~~~~v~~lI~~la~ 251 (253)
...+.+.+.++.+++
T Consensus 132 ~~~~~~~~~l~~l~~ 146 (290)
T 3tva_A 132 PDYSELVRVTQDLLT 146 (290)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 16
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=26.53 E-value=2.3e+02 Score=22.21 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=39.8
Q ss_pred ceEEEEEcccCCCCCCCCch-HHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCc
Q 025412 42 AVTIHVTGFKKFHGVSENPT-ETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRR 120 (253)
Q Consensus 42 ~~~VlVTGFgPF~~~~~NPS-~~i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~p 120 (253)
.+-|+.||=+ .+...|.+ ..+++.|.+ .| +++....++| +-...+.+.+++++. ....
T Consensus 12 ~v~Ii~tGdE--~g~i~D~n~~~l~~~L~~----~G----~~v~~~~iv~----Dd~~~i~~~l~~a~~-------~~~~ 70 (172)
T 1mkz_A 12 RIAILTVSNR--RGEEDDTSGHYLRDSAQE----AG----HHVVDKAIVK----ENRYAIRAQVSAWIA-------SDDV 70 (172)
T ss_dssp EEEEEEECSS--CCGGGCHHHHHHHHHHHH----TT----CEEEEEEEEC----SCHHHHHHHHHHHHH-------SSSC
T ss_pred EEEEEEEeCC--CCcccCccHHHHHHHHHH----CC----CeEeEEEEeC----CCHHHHHHHHHHHHh-------cCCC
Confidence 4568999988 34444544 334555543 33 3443333443 122233344444332 2247
Q ss_pred cEEEEeeecC-CCceeeeeEe
Q 025412 121 IIWVHFGVNS-GATRFAIEQQ 140 (253)
Q Consensus 121 d~VIhlGva~-~~~~i~lE~~ 140 (253)
|+||..|=.+ +...++.|-.
T Consensus 71 DlVittGG~g~~~~D~t~ea~ 91 (172)
T 1mkz_A 71 QVVLITGGTGLTEGDQAPEAL 91 (172)
T ss_dssp CEEEEESCCSSSTTCCHHHHH
T ss_pred CEEEeCCCCCCCCCCCHHHHH
Confidence 9999988644 4444555544
No 17
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=22.82 E-value=2.7e+02 Score=21.67 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=40.2
Q ss_pred CceEEEEEcccCCCCCCCCch-HHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCC
Q 025412 41 PAVTIHVTGFKKFHGVSENPT-ETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSR 119 (253)
Q Consensus 41 ~~~~VlVTGFgPF~~~~~NPS-~~i~~~L~~~~~~~g~~~~~~i~~~~vlpv~~~~~~~~~y~~v~~~i~~~~~~~~~~~ 119 (253)
-.+-|+.||=+- +...|.+ ..+++.|.+ .| +++....++| +-...+.+.+++++. ..+
T Consensus 14 ~rv~Ii~tGdEl--g~i~Dsn~~~l~~~L~~----~G----~~v~~~~iv~----Dd~~~i~~~l~~~~~-------~~~ 72 (169)
T 1y5e_A 14 VRCKIVTISDTR--TEETDKSGQLLHELLKE----AG----HKVTSYEIVK----DDKESIQQAVLAGYH-------KED 72 (169)
T ss_dssp CEEEEEEECSSC--CTTTCHHHHHHHHHHHH----HT----CEEEEEEEEC----SSHHHHHHHHHHHHT-------CTT
T ss_pred CEEEEEEEcCcc--CeeccChHHHHHHHHHH----CC----CeEeEEEEeC----CCHHHHHHHHHHHHh-------cCC
Confidence 345689999887 4445544 334555543 23 2333333443 112233334443322 236
Q ss_pred ccEEEEeeecC-CCceeeeeEe
Q 025412 120 RIIWVHFGVNS-GATRFAIEQQ 140 (253)
Q Consensus 120 pd~VIhlGva~-~~~~i~lE~~ 140 (253)
.|+||..|=.+ +...++.|-.
T Consensus 73 ~DlVittGG~g~g~~D~t~ea~ 94 (169)
T 1y5e_A 73 VDVVLTNGGTGITKRDVTIEAV 94 (169)
T ss_dssp CSEEEEECCCSSSTTCCHHHHH
T ss_pred CCEEEEcCCCCCCCCCCcHHHH
Confidence 79999988644 4445555543
No 18
>2kdp_A Histone deacetylase complex subunit SAP30; SIN3, zinc finger motif, nucleic acid interaction, nucleus, repressor, transcription; NMR {Homo sapiens}
Probab=21.04 E-value=1.5e+02 Score=20.48 Aligned_cols=28 Identities=18% Similarity=0.568 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCceEEeCCCCc-ccchHH
Q 025412 180 EEITRTLAKKGYEVITSDDAGR-FVCNYV 207 (253)
Q Consensus 180 ~~l~~~l~~~g~~v~iS~dAG~-YlCN~i 207 (253)
+.+.+.+.+..+...+-.+|-. |+|+|-
T Consensus 27 KRIqKtvaq~~LKL~~d~~a~HiYICd~H 55 (71)
T 2kdp_A 27 KRIQKSISQKKVKIELDKSARHLYICDYH 55 (71)
T ss_dssp HHHHHHHHHHCCSEEECTTCSCCCCCHHH
T ss_pred HHHHHHHHHHhheeeccCCCcEEEehhhh
Confidence 6888999888888888888776 999985
No 19
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=20.05 E-value=1.3e+02 Score=22.45 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHHHhCCCceEEeCCCCcccchHHH
Q 025412 175 TSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVY 208 (253)
Q Consensus 175 T~lpv~~l~~~l~~~g~~v~iS~dAG~YlCN~iy 208 (253)
+.-|+++.++.|.+.|+ +.....-|.|++....
T Consensus 48 Sr~tvr~Al~~L~~~G~-i~~~~~~G~~V~~~~~ 80 (126)
T 3ic7_A 48 NANTVMRSYEYLQSQEV-IYNKRGIGFFVASGAK 80 (126)
T ss_dssp CSGGGHHHHHHHHTTTS-EEEETTTEEEECTTHH
T ss_pred CHHHHHHHHHHHHHCCc-EEEEcCCccEEccCcH
Confidence 67889999999999999 8888889999998653
Done!