BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025413
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H8G|A Chain A, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2H8G|B Chain B, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2QSU|A Chain A, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QSU|B Chain B, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QTG|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTG|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTT|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|2QTT|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|3LGS|A Chain A, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|B Chain B, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|C Chain C, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|D Chain D, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
Length = 267
Score = 355 bits (910), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/242 (69%), Positives = 201/242 (83%)
Query: 12 ISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSL 71
ISSVV +IAMQ EA+PLVNKF L E DS +G+PWV YHG +KDL +N++ PG+D +L
Sbjct: 26 ISSVVFVIAMQAEALPLVNKFGLSETTDSPLGKGLPWVLYHGVHKDLRINVVCPGRDAAL 85
Query: 72 EVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPI 131
+DSVGT+ ASL+T+ASIQALKPD+IIN +IGDVFL+SDV FHDRRIPI
Sbjct: 86 GIDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDRRIPI 145
Query: 132 PVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAA 191
P+FDLYGVG RQAFSTPNLL+ELNLK+ +LSTGDSLDMS+QDET I ANDAT+KDMEGAA
Sbjct: 146 PMFDLYGVGLRQAFSTPNLLKELNLKIGRLSTGDSLDMSTQDETLIIANDATLKDMEGAA 205
Query: 192 VAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFS 251
VAYVADL K+P +F+KAVTDLVDGDKPTAEEF+QNL VTAALE + ++VI+FING+ S
Sbjct: 206 VAYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLTVVTAALEGTATKVINFINGRNLS 265
Query: 252 EL 253
+L
Sbjct: 266 DL 267
>pdb|3BSF|A Chain A, Crystal Structure Of The MtaSAH NUCLEOSIDASE
pdb|3BSF|B Chain B, Crystal Structure Of The MtaSAH NUCLEOSIDASE
Length = 254
Score = 322 bits (826), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 149/249 (59%), Positives = 197/249 (79%)
Query: 5 GEKSQEAISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIW 64
G+ + IS++V I+AMQ EA PL+N+ L E+ ++ FP+ V W+ + G YKDL++NI+
Sbjct: 6 GQVEKRPISTIVFIVAMQKEAQPLINRLRLVEEVNTPFPKEVTWIMFKGMYKDLNINIVC 65
Query: 65 PGKDTSLEVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAF 124
PGKD++L V+SVGT+ ASLVTYASI A++PDLIIN I DV+++S VAF
Sbjct: 66 PGKDSTLGVESVGTVPASLVTYASILAIQPDLIINAGTAGGFKAKGACISDVYVVSTVAF 125
Query: 125 HDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATI 184
HDRRIP+PV D+YGVG R F TPNL++ELNLKV +LSTGDS+DMS DE SITANDAT+
Sbjct: 126 HDRRIPVPVLDIYGVGMRNTFPTPNLIKELNLKVGRLSTGDSMDMSPHDEESITANDATV 185
Query: 185 KDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDF 244
KDMEGAAVAYVAD+FKVP + +K VTD+VDG++PT+EEF++NL AVTA L++S+++VIDF
Sbjct: 186 KDMEGAAVAYVADIFKVPTILIKGVTDIVDGNRPTSEEFLENLAAVTAKLDESLTKVIDF 245
Query: 245 INGKRFSEL 253
I+GK S+L
Sbjct: 246 ISGKCLSDL 254
>pdb|4GMH|A Chain A, Crystal Structure Of Staphylococcus Aureus
5'-MethylthioadenosineS- Adenosylhomocysteine
Nucleosidase
Length = 230
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 107/246 (43%), Gaps = 34/246 (13%)
Query: 13 SSVVIIIAMQTEAMPLVNKF-ELKEDQDSVFPEGVPWVR-YHGTYKDLHLNIIWPGKDTS 70
S + II AM+ E L NK +L E V V+ Y G KD + I G
Sbjct: 2 SMIGIIGAMEEEVTILKNKLTQLSEIS-------VAHVKFYTGILKDREVVITQSG---- 50
Query: 71 LEVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIP 130
+G ++A++ T I KPD+IIN ++GDV + DV +HD
Sbjct: 51 -----IGKVNAAISTTLLINKFKPDVIINTGSAGALDESL-NVGDVLISDDVKYHDADAT 104
Query: 131 IPVFDLYGVGQRQ-AFSTPNLLRE----------LNLKVCKLSTGDSLDMSSQDETSITA 179
++ + Q AF + L E L KV + +GDS S + I
Sbjct: 105 AFGYEYGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKVGLIVSGDSFIGSVEQRQKIKK 164
Query: 180 N--DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTA-EEFMQN-LVAVTAALE 235
+A +ME A+A F VP + V+AV+DL +G+ + E F++ V+ + +E
Sbjct: 165 AFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVE 224
Query: 236 QSVSQV 241
VSQ+
Sbjct: 225 ALVSQL 230
>pdb|3BL6|A Chain A, Crystal Structure Of Staphylococcus Aureus 5'-
MethylthioadenosineS-Adenosylhomocysteine Nucleosidase
In Complex With Formycin A
Length = 230
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 34/242 (14%)
Query: 17 IIIAMQTEAMPLVNKF-ELKEDQDSVFPEGVPWVR-YHGTYKDLHLNIIWPGKDTSLEVD 74
II AM+ E L NK +L E V V+ Y G KD + I G
Sbjct: 6 IIGAMEEEVTILKNKLTQLSEIS-------VAHVKFYTGILKDREVVITQSG-------- 50
Query: 75 SVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIPVF 134
+G ++A++ T I KPD+IIN ++GDV + DV +HD +
Sbjct: 51 -IGKVNAAISTTLLINKFKPDVIINTGSAGALDESL-NVGDVLISDDVKYHDADATAFGY 108
Query: 135 DLYGVGQRQ-AFSTPNLLRE----------LNLKVCKLSTGDSLDMSSQDETSITAN--D 181
+ + Q AF + L E L KV + +GDS S + I +
Sbjct: 109 EYGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKVGLIVSGDSFIGSVEQRQKIKKAFPN 168
Query: 182 ATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTA-EEFMQN-LVAVTAALEQSVS 239
A +ME A+A F VP + V+AV+DL +G+ + E F++ V+ + +E VS
Sbjct: 169 AMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVS 228
Query: 240 QV 241
Q+
Sbjct: 229 QL 230
>pdb|3DP9|A Chain A, Crystal Structure Of Vibrio Cholerae
5'-methylthioadenosine/s-adenosyl Homocysteine
Nucleosidase (mtan) Complexed With Butylthio-dadme-
Immucillin A
pdb|3DP9|C Chain C, Crystal Structure Of Vibrio Cholerae
5'-methylthioadenosine/s-adenosyl Homocysteine
Nucleosidase (mtan) Complexed With Butylthio-dadme-
Immucillin A
Length = 231
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 30/223 (13%)
Query: 17 IIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSV 76
II AMQ E L + L ED V G + Y G + G D L +
Sbjct: 5 IIGAMQQEVAILKD---LIEDVQEVNQAGCTF--YSGQIQ---------GVDVVLLQSGI 50
Query: 77 GTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIPVFDL 136
G +SA+L T I PD++IN ++GDV + S+V HD + +++
Sbjct: 51 GKVSAALGTALLISQYAPDVVINTGSAGGFDASL-NVGDVVISSEVRHHDADVTAFGYEI 109
Query: 137 YGV-GQRQAFSTPNLLREL---------NLKVCK--LSTGDSLDMSSQDETSITANDATI 184
+ GQ AF L + N + + TGD+ +++ + I + ++
Sbjct: 110 GQMAGQPAAFKADEKLMTVAEQALAQLPNTHAVRGLICTGDAFVCTAERQQFIRQHFPSV 169
Query: 185 K--DMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTA-EEFM 224
+ME +A+A FKVP + V+A++D+ D + P + EEF+
Sbjct: 170 VAVEMEASAIAQTCHQFKVPFVVVRAISDVADKESPLSFEEFL 212
>pdb|4G89|A Chain A, Crystal Structure Of K. Pneumoniae MtaADOHCY NUCLEOSIDASE
IN COMPLEX With Fragmented S-Adenosyl-L-Homocysteine
pdb|4G89|B Chain B, Crystal Structure Of K. Pneumoniae MtaADOHCY NUCLEOSIDASE
IN COMPLEX With Fragmented S-Adenosyl-L-Homocysteine
Length = 237
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 66 GKDTSLEVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFH 125
G D +L +G ++A++ ++ +PD+IIN +GD+ + + +H
Sbjct: 45 GVDVALLKSGIGKVAAAMGATLLLERCQPDVIINTGSAGGLASTL-KVGDIVVSDEARYH 103
Query: 126 DRRIPIPVFDLYG----------VGQRQAFSTPNLLRELNLKVCK--LSTGDSLDMSSQD 173
D + ++ YG ++ + + ++ L+L + + +GD+ S
Sbjct: 104 DADVTAFGYE-YGQLPGCPAGFKADEKLVAAAESCIKALDLNAVRGLIVSGDAFINGSVG 162
Query: 174 ETSITAN--DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTA-EEFM 224
I N A +ME A+A+V FKVP + V+A++D+ D + EEF+
Sbjct: 163 LAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFL 216
>pdb|3EEI|A Chain A, Crystal Structure Of 5'-MethylthioadenosineS-
Adenosylhomocysteine Nucleosidase From Neisseria
Meningitidis In Complex With Methylthio-Immucillin-A
pdb|3EEI|B Chain B, Crystal Structure Of 5'-MethylthioadenosineS-
Adenosylhomocysteine Nucleosidase From Neisseria
Meningitidis In Complex With Methylthio-Immucillin-A
Length = 233
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 22/188 (11%)
Query: 65 PGKDTSLEVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAF 124
GK L + +G ++A++ T I+ D +IN DV + ++ A
Sbjct: 42 AGKRMVLALSGIGKVNAAVATAWIIREFAADCVINTGSAGGLGKGLKVG-DVVIGTETAH 100
Query: 125 HDRRIPIPVFDLYGVGQR----QAFSTPNLLRELNLKVCK-----------LSTGDSLDM 169
HD + + F Y GQ F++ +L E + + + +GD
Sbjct: 101 HD--VDVTAFG-YAWGQVPQLPARFASDGILIEAAKRAARTFEGAAVEQGLIVSGDRFVH 157
Query: 170 SSQDETSITANDATIK--DMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTA-EEFMQN 226
SS+ I + +K +ME AA+A + P + ++AV+D D + +EF++
Sbjct: 158 SSEGVAEIRKHFPEVKAVEMEAAAIAQTCHQLETPFVIIRAVSDSADEKADISFDEFLKT 217
Query: 227 LVAVTAAL 234
A +A +
Sbjct: 218 AAANSAKM 225
>pdb|1Z5N|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE GLU12GLN
Mutant Complexed With 5-Methylthioribose And Adenine
pdb|1Z5N|B Chain B, Crystal Structure Of MtaADOHCY NUCLEOSIDASE GLU12GLN
Mutant Complexed With 5-Methylthioribose And Adenine
Length = 242
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 16/163 (9%)
Query: 66 GKDTSLEVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFH 125
G + +L +G ++A+L ++ KPD+IIN +GD+ + + +H
Sbjct: 50 GTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTL-KVGDIVVSDEARYH 108
Query: 126 DRRIPIPVFDLYGV--GQRQAFSTPN----------LLRELNLKVCKLSTGDSLDMSSQD 173
D + ++ YG G F + LN + +GD+ S
Sbjct: 109 DADVTAFGYE-YGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVG 167
Query: 174 ETSITAN--DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVD 214
I N A +ME A+A+V F VP + V+A++D+ D
Sbjct: 168 LAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVAD 210
>pdb|1JYS|A Chain A, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
pdb|1JYS|B Chain B, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
pdb|1NC3|A Chain A, Crystal Structure Of E. Coli Mta/adohcy Nucleosidase
Complexed With Formycin A (fma)
pdb|1NC3|B Chain B, Crystal Structure Of E. Coli Mta/adohcy Nucleosidase
Complexed With Formycin A (fma)
pdb|1NC1|A Chain A, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
Complexed With 5'-Methylthiotubercidin (Mth)
pdb|1NC1|B Chain B, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
Complexed With 5'-Methylthiotubercidin (Mth)
pdb|1Y6Q|A Chain A, Cyrstal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Dadme-Imma
pdb|1Y6Q|B Chain B, Cyrstal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Dadme-Imma
pdb|1Y6R|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Imma.
pdb|1Y6R|B Chain B, Crystal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Imma.
pdb|1Z5P|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE WITH A
LIGAND-Free Purine Binding Site
pdb|3DF9|A Chain A, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
Complex With Bnt-Dadmeimma
pdb|3DF9|B Chain B, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
Complex With Bnt-Dadmeimma
Length = 242
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 16/163 (9%)
Query: 66 GKDTSLEVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFH 125
G + +L +G ++A+L ++ KPD+IIN +GD+ + + +H
Sbjct: 50 GTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTL-KVGDIVVSDEARYH 108
Query: 126 DRRIPIPVFDLYGV--GQRQAFSTPN----------LLRELNLKVCKLSTGDSLDMSSQD 173
D + ++ YG G F + LN + +GD+ S
Sbjct: 109 DADVTAFGYE-YGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVG 167
Query: 174 ETSITAN--DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVD 214
I N A +ME A+A+V F VP + V+A++D+ D
Sbjct: 168 LAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVAD 210
>pdb|3O4V|A Chain A, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
COMPLEX WITH (4- Chlorophenyl)thio-Dadme-Imma
pdb|3O4V|B Chain B, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
COMPLEX WITH (4- Chlorophenyl)thio-Dadme-Imma
Length = 234
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 16/163 (9%)
Query: 66 GKDTSLEVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFH 125
G + +L +G ++A+L ++ KPD+IIN +GD+ + + +H
Sbjct: 42 GTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTL-KVGDIVVSDEARYH 100
Query: 126 DRRIPIPVFDLYGV--GQRQAFSTPN----------LLRELNLKVCKLSTGDSLDMSSQD 173
D + ++ YG G F + LN + +GD+ S
Sbjct: 101 DADVTAFGYE-YGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVG 159
Query: 174 ETSITAN--DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVD 214
I N A +ME A+A+V F VP + V+A++D+ D
Sbjct: 160 LAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVAD 202
>pdb|3NM4|A Chain A, Helicobacter Pylori Mtan
pdb|3NM4|B Chain B, Helicobacter Pylori Mtan
pdb|3NM5|A Chain A, Helicobacter Pylori Mtan Complexed With Formycin A
pdb|3NM5|B Chain B, Helicobacter Pylori Mtan Complexed With Formycin A
pdb|3NM6|B Chain B, Helicobacter Pylori Mtan Complexed With Adenine And Tris
Length = 230
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 152 RELNLKVCKLSTGDSLDMSSQ-DETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVT 210
+ + LK +++GD S + E ++ A+ +MEGA+VA+V F VP +++++
Sbjct: 138 QHIALKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSIS 197
Query: 211 DLVDGDKPTA-EEFMQNLVAVTAALEQSV 238
D D + +EF++ +A +S+
Sbjct: 198 DNADEKAGMSFDEFLEKSAHTSAKFLKSM 226
>pdb|4FFS|A Chain A, Crystal Structure Of
5'-MethylthioadenosineS-Adenosylhomocysteine
Nucleosidase From Helicobacter Pylori With
Butyl-Thio-Dadme- Immucillin-A
Length = 239
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 152 RELNLKVCKLSTGDSLDMSSQ-DETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVT 210
+ + LK +++GD S + E ++ A+ +MEGA+VA+V F VP +++++
Sbjct: 147 QHIALKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSIS 206
Query: 211 DLVDGDKPTA-EEFMQNLVAVTAALEQSV 238
D D + +EF++ +A +S+
Sbjct: 207 DNADEKAGMSFDEFLEKSAHTSAKFLKSM 235
>pdb|1Z5O|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE ASP197ASN
Mutant Complexed With 5'-Methylthioadenosine
pdb|1Z5O|B Chain B, Crystal Structure Of MtaADOHCY NUCLEOSIDASE ASP197ASN
Mutant Complexed With 5'-Methylthioadenosine
Length = 242
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 16/163 (9%)
Query: 66 GKDTSLEVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFH 125
G + +L +G ++A+L ++ KPD+IIN +GD+ + + +H
Sbjct: 50 GTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTL-KVGDIVVSDEARYH 108
Query: 126 DRRIPIPVFDLYGV--GQRQAFSTPN----------LLRELNLKVCKLSTGDSLDMSSQD 173
D + ++ YG G F + LN + +GD+ S
Sbjct: 109 DADVTAFGYE-YGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVG 167
Query: 174 ETSITAN--DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVD 214
I N A +ME A+A+V F VP + V+A++++ D
Sbjct: 168 LAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISNVAD 210
>pdb|1ZOS|A Chain A, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|B Chain B, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|C Chain C, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|D Chain D, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|E Chain E, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|F Chain F, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
Length = 230
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 112 SIGDVFLISDVAFHDRRIPIPVFDL-YGVGQRQAF---STPNLLRELNLKVCKLSTGDSL 167
++GDV + +A+HD + + F YG +Q S + ++ + +L L
Sbjct: 85 AVGDVVIADKLAYHD--VDVTAFGYAYGQMAQQPLYFESDKTFVAQIQESLSQLDQNWHL 142
Query: 168 DMSSQDETSITANDA--TIK---------DMEGAAVAYVADLFKVPALFVKAVTD 211
+ + ++ + ND IK +MEGAA+A A +P L ++A++D
Sbjct: 143 GLIATGDSFVAGNDKIEAIKSHFPEVLAVEMEGAAIAQAAHTLNLPVLVIRAMSD 197
>pdb|2WZM|A Chain A, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
In Its Apo And Liganded Form
pdb|2WZM|B Chain B, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
In Its Apo And Liganded Form
pdb|2WZT|A Chain A, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
In Its Apo And Liganded Form
pdb|2WZT|B Chain B, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
In Its Apo And Liganded Form
Length = 283
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 55 YKDLHLNIIWPGKDTSLEVDSVGTI 79
Y DL+L I WPG DTS VDS G +
Sbjct: 109 YVDLYL-IHWPGGDTSKYVDSWGGL 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,424,229
Number of Sequences: 62578
Number of extensions: 235009
Number of successful extensions: 507
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 20
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)