Query 025413
Match_columns 253
No_of_seqs 188 out of 1177
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02584 5'-methylthioadenosin 100.0 4.3E-49 9.3E-54 337.0 29.5 246 8-253 4-249 (249)
2 PRK14697 bifunctional 5'-methy 100.0 7.7E-45 1.7E-49 308.7 25.7 219 12-250 1-232 (233)
3 PRK06714 S-adenosylhomocystein 100.0 3.3E-44 7.1E-49 304.7 25.6 217 12-246 1-229 (236)
4 TIGR01704 MTA/SAH-Nsdase 5'-me 100.0 1.2E-43 2.6E-48 300.8 25.6 212 14-245 1-228 (228)
5 PRK07164 5'-methylthioadenosin 100.0 4.5E-42 9.7E-47 287.9 26.1 210 12-245 3-218 (218)
6 PRK06698 bifunctional 5'-methy 100.0 1.3E-41 2.8E-46 315.5 26.2 220 12-251 1-233 (459)
7 PRK05584 5'-methylthioadenosin 100.0 4.8E-40 1E-44 279.1 26.3 215 14-245 2-229 (230)
8 COG0775 Pfs Nucleoside phospho 100.0 2E-37 4.4E-42 262.7 22.8 212 13-245 3-233 (234)
9 TIGR03664 fut_nucase futalosin 100.0 3.3E-37 7.1E-42 260.1 20.7 198 15-241 1-221 (222)
10 PRK08236 hypothetical protein; 100.0 1.1E-35 2.3E-40 248.5 21.6 179 13-226 2-198 (212)
11 PF01048 PNP_UDP_1: Phosphoryl 100.0 3.9E-35 8.4E-40 249.0 22.3 216 14-243 1-234 (234)
12 PRK11178 uridine phosphorylase 100.0 1.9E-33 4E-38 241.1 25.5 208 13-240 17-249 (251)
13 PRK06026 5'-methylthioadenosin 100.0 4.5E-34 9.8E-39 236.7 19.5 187 13-246 11-206 (212)
14 PRK05819 deoD purine nucleosid 100.0 6.4E-33 1.4E-37 235.9 26.3 205 10-232 10-226 (235)
15 PRK13374 purine nucleoside pho 100.0 5.1E-33 1.1E-37 236.1 24.8 188 12-217 13-211 (233)
16 TIGR01705 MTA/SAH-nuc-hyp 5'-m 100.0 1.2E-33 2.6E-38 233.7 19.8 187 8-247 6-207 (212)
17 TIGR00107 deoD purine-nucleosi 100.0 1.7E-32 3.7E-37 232.8 24.7 209 12-238 9-229 (232)
18 TIGR01718 Uridine-psphlse urid 100.0 4E-32 8.6E-37 232.3 24.2 209 11-239 10-242 (245)
19 PRK05634 nucleosidase; Provisi 100.0 1.1E-31 2.3E-36 220.1 19.6 180 10-240 1-183 (185)
20 PRK08666 5'-methylthioadenosin 100.0 1.9E-30 4.2E-35 223.8 23.2 219 12-247 1-246 (261)
21 PRK07115 AMP nucleosidase; Pro 100.0 2.6E-30 5.6E-35 221.6 23.7 180 12-216 23-213 (258)
22 TIGR01697 PNPH-PUNA-XAPA inosi 100.0 6.1E-29 1.3E-33 213.0 24.3 188 48-242 41-247 (248)
23 TIGR01694 MTAP 5'-deoxy-5'-met 100.0 3.2E-28 6.8E-33 207.9 20.8 215 14-243 1-240 (241)
24 TIGR01700 PNPH purine nucleosi 100.0 2E-27 4.3E-32 203.6 23.5 183 48-241 41-247 (249)
25 TIGR01719 euk_UDPppase uridine 100.0 2.2E-27 4.7E-32 206.8 23.3 187 14-216 32-257 (287)
26 PRK08202 purine nucleoside pho 100.0 6E-27 1.3E-31 203.0 25.2 224 12-244 21-271 (272)
27 TIGR01721 AMN-like AMP nucleos 100.0 7.6E-27 1.7E-31 200.0 23.6 180 13-216 23-214 (266)
28 COG2820 Udp Uridine phosphoryl 100.0 6.1E-27 1.3E-31 193.2 20.0 184 14-217 18-223 (248)
29 TIGR03468 HpnG hopanoid-associ 100.0 4E-27 8.6E-32 197.4 18.1 176 14-244 3-188 (212)
30 PRK08292 AMP nucleosidase; Pro 100.0 9.4E-27 2E-31 211.4 21.8 156 46-217 263-439 (489)
31 TIGR01717 AMP-nucleosdse AMP n 99.9 2.6E-26 5.7E-31 208.0 22.1 156 46-217 251-427 (477)
32 PRK07077 hypothetical protein; 99.9 3.6E-26 7.8E-31 193.2 20.6 153 9-214 6-170 (238)
33 COG0813 DeoD Purine-nucleoside 99.9 3.5E-25 7.5E-30 180.3 20.1 206 11-233 12-228 (236)
34 TIGR01699 XAPA xanthosine phos 99.9 3.1E-24 6.8E-29 182.7 21.1 214 15-243 2-248 (248)
35 PRK09136 5'-methylthioadenosin 99.9 3.3E-23 7.2E-28 176.5 23.1 220 14-243 1-243 (245)
36 PRK08931 5'-methylthioadenosin 99.7 4.6E-15 9.9E-20 128.8 22.6 227 11-247 2-249 (289)
37 PRK08564 5'-methylthioadenosin 99.7 6.9E-15 1.5E-19 126.9 22.5 226 12-247 7-252 (267)
38 PRK07432 5'-methylthioadenosin 99.7 1.5E-14 3.3E-19 125.5 24.0 227 10-247 1-252 (290)
39 TIGR01698 PUNP purine nucleoti 99.7 6.8E-14 1.5E-18 118.3 24.7 186 49-243 42-237 (237)
40 PRK07823 5'-methylthioadenosin 99.6 6.5E-13 1.4E-17 114.2 23.5 224 11-247 4-244 (264)
41 COG0005 Pnp Purine nucleoside 99.6 5.4E-13 1.2E-17 113.3 20.4 222 11-244 15-261 (262)
42 KOG3985 Methylthioadenosine ph 99.4 5.9E-11 1.3E-15 97.4 16.9 225 13-246 10-259 (283)
43 KOG3984 Purine nucleoside phos 99.1 4.4E-08 9.5E-13 81.3 19.1 225 11-245 23-284 (286)
44 KOG3728 Uridine phosphorylase 99.1 4.1E-09 8.9E-14 87.2 12.9 189 14-217 53-279 (308)
45 PF06516 NUP: Purine nucleosid 98.5 7.1E-06 1.5E-10 71.9 16.2 190 13-215 3-266 (314)
46 COG5042 NUP Purine nucleoside 95.8 0.012 2.6E-07 50.6 4.2 191 10-215 35-299 (349)
47 PF01470 Peptidase_C15: Pyrogl 72.4 14 0.00031 30.6 6.5 29 79-107 46-74 (202)
48 PRK13195 pyrrolidone-carboxyla 71.2 9.2 0.0002 32.3 5.1 33 81-115 49-81 (222)
49 COG2039 Pcp Pyrrolidone-carbox 71.0 17 0.00037 29.9 6.3 35 80-116 47-81 (207)
50 PRK13196 pyrrolidone-carboxyla 67.7 14 0.00031 30.9 5.5 28 80-107 48-75 (211)
51 PRK13194 pyrrolidone-carboxyla 63.5 20 0.00043 29.9 5.6 29 79-107 46-74 (208)
52 PRK13193 pyrrolidone-carboxyla 63.4 20 0.00043 29.9 5.6 28 80-107 47-74 (209)
53 PRK00994 F420-dependent methyl 55.2 39 0.00085 28.9 5.8 59 58-123 32-98 (277)
54 COG0381 WecB UDP-N-acetylgluco 52.7 85 0.0018 28.8 8.0 28 188-215 288-315 (383)
55 TIGR00504 pyro_pdase pyrogluta 51.2 39 0.00085 28.2 5.4 27 81-107 46-72 (212)
56 TIGR01957 nuoB_fam NADH-quinon 47.8 44 0.00095 26.2 4.8 28 80-107 70-98 (145)
57 PRK13197 pyrrolidone-carboxyla 47.6 50 0.0011 27.6 5.5 27 81-107 49-75 (215)
58 PRK14815 NADH dehydrogenase su 43.3 52 0.0011 26.9 4.7 31 77-107 83-114 (183)
59 cd00501 Peptidase_C15 Pyroglut 42.0 71 0.0015 26.0 5.5 27 81-107 48-74 (194)
60 PRK14818 NADH dehydrogenase su 40.9 45 0.00097 27.0 3.9 31 76-106 79-110 (173)
61 PRK14813 NADH dehydrogenase su 39.7 58 0.0013 26.7 4.5 32 76-107 76-108 (189)
62 CHL00023 ndhK NADH dehydrogena 39.4 47 0.001 28.0 4.0 29 79-107 83-112 (225)
63 COG1927 Mtd Coenzyme F420-depe 37.6 88 0.0019 26.3 5.2 44 58-108 32-75 (277)
64 PRK14814 NADH dehydrogenase su 37.4 67 0.0015 26.3 4.5 28 80-107 86-114 (186)
65 PRK06455 riboflavin synthase; 35.0 1.7E+02 0.0038 23.2 6.3 28 76-103 39-66 (155)
66 PRK06411 NADH dehydrogenase su 34.1 61 0.0013 26.5 3.8 27 81-107 88-115 (183)
67 PF01583 APS_kinase: Adenylyls 32.6 1.1E+02 0.0025 24.2 5.1 35 60-100 3-37 (156)
68 PRK14816 NADH dehydrogenase su 31.2 89 0.0019 25.5 4.3 31 77-107 91-122 (182)
69 PF14582 Metallophos_3: Metall 30.3 1E+02 0.0022 26.4 4.6 37 83-121 196-232 (255)
70 PF04989 CmcI: Cephalosporin h 30.1 56 0.0012 27.3 3.0 28 79-106 18-45 (206)
71 COG3260 Ni,Fe-hydrogenase III 29.7 1.2E+02 0.0025 23.7 4.4 28 80-107 62-90 (148)
72 COG2910 Putative NADH-flavin r 29.6 2.2E+02 0.0047 23.7 6.2 93 13-114 1-114 (211)
73 PRK14819 NADH dehydrogenase su 29.5 1.1E+02 0.0023 26.5 4.6 28 80-107 84-112 (264)
74 PRK14820 NADH dehydrogenase su 28.8 88 0.0019 25.5 3.9 26 82-107 88-114 (180)
75 PF14492 EFG_II: Elongation Fa 27.1 1.9E+02 0.004 19.6 4.8 68 12-97 5-72 (75)
76 PF12641 Flavodoxin_3: Flavodo 26.6 81 0.0017 25.1 3.3 44 55-107 37-80 (160)
77 PF00142 Fer4_NifH: 4Fe-4S iro 26.4 91 0.002 27.2 3.8 30 72-102 7-36 (273)
78 KOG3022 Predicted ATPase, nucl 26.3 1.4E+02 0.003 26.3 4.8 41 58-104 47-88 (300)
79 PF01993 MTD: methylene-5,6,7, 25.3 1.7E+02 0.0037 25.2 5.0 59 57-122 30-96 (276)
80 PRK15116 sulfur acceptor prote 24.7 1.3E+02 0.0029 26.1 4.5 43 76-118 129-171 (268)
81 TIGR03029 EpsG chain length de 23.7 2E+02 0.0042 24.5 5.5 36 58-100 103-138 (274)
82 PRK07667 uridine kinase; Provi 23.6 1.9E+02 0.0041 23.3 5.1 31 58-94 16-46 (193)
83 COG0003 ArsA Predicted ATPase 23.4 1.5E+02 0.0033 26.5 4.8 27 73-100 10-36 (322)
84 cd06533 Glyco_transf_WecG_TagA 23.2 3.1E+02 0.0067 21.7 6.2 23 12-34 46-68 (171)
85 KOG1468 Predicted translation 23.1 1.1E+02 0.0024 26.8 3.7 40 157-206 234-273 (354)
86 PRK06455 riboflavin synthase; 22.1 2.8E+02 0.006 22.1 5.4 28 189-216 80-107 (155)
87 PF03808 Glyco_tran_WecB: Glyc 21.7 4E+02 0.0087 21.1 6.6 23 13-35 49-71 (172)
88 PRK13236 nitrogenase reductase 21.5 2.1E+02 0.0047 24.9 5.3 27 73-99 14-40 (296)
89 COG0794 GutQ Predicted sugar p 21.2 2E+02 0.0043 24.0 4.6 59 53-123 82-140 (202)
90 cd00755 YgdL_like Family of ac 20.8 2.2E+02 0.0048 24.0 5.0 42 76-117 110-151 (231)
91 CHL00175 minD septum-site dete 20.6 2.2E+02 0.0048 24.3 5.2 32 59-96 16-47 (281)
No 1
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=100.00 E-value=4.3e-49 Score=336.95 Aligned_cols=246 Identities=72% Similarity=1.079 Sum_probs=221.5
Q ss_pred cccccCeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHH
Q 025413 8 SQEAISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYA 87 (253)
Q Consensus 8 ~~~~~~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~ 87 (253)
...++++|+|++||++|++++++.+...+.....|+...++.+|+|+++|++|+++.+|.+..++.+|||++|||+++++
T Consensus 4 ~~~~~~~I~Ii~Am~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~G~~~g~~V~v~~sG~~~~~~i~~IGkvnAA~~~~~ 83 (249)
T PLN02584 4 EMRPISTVLIVIAMQAEAMPLVNALGLVEDVDSPFPKGVPWVRYSGTHKGLRVHVVCPGKDKALGVDSVGTVPASLVTYA 83 (249)
T ss_pred ccCCCceEEEEEEcHHHHHHHHHHHhhhccccccccccCCeeEEEEEECCEEEEEEecCCccccccCccCHHHHHHHHHH
Confidence 34677899999999999999999998887654445456789999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCCChhhhhcCcceEEEEeecccc
Q 025413 88 SIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSL 167 (253)
Q Consensus 88 li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~~~~l~~~~~~~~G~i~sgd~~ 167 (253)
++.+++|+.||++|+|||++++++++||+||+++++++|.+...+.|..|..++.|.++++++.....++.|.++|+|.|
T Consensus 84 li~~~~~~~II~~G~aG~l~~~~l~vGDvVia~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~G~i~SgD~F 163 (249)
T PLN02584 84 AIQALKPDLIINAGTAGGFKAKGAAIGDVFLATAVANHDRRIPIPVFDKYGVGTRDAFPTPNLIKALGLKEGVLSTGNSL 163 (249)
T ss_pred HHHhcCCCEEEEEecccCcCcCCCCcCCEEEECeeEecccCCCcccccccccCccccCCCHHHHhhCCCeEEEEEEeCEE
Confidence 99999999999999999998337999999999999999987655667667778878777777777778899999999999
Q ss_pred ccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHhhcc
Q 025413 168 DMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFING 247 (253)
Q Consensus 168 ~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~aa~~~~~~l~~~l~~~~~ 247 (253)
+.+.+..+.+++++++++|||+||+|++|+.+++||++||+|||.++++..++++|.++...+++.+.+.|.++++.+++
T Consensus 164 ~~~~~~~~~~~~~~a~~vDME~aAia~va~~~gvp~~~IR~ISD~~~~~~~~~~ef~~~~~~a~~~~~~~l~~~~~~~~~ 243 (249)
T PLN02584 164 DMTEQDEESIKANDATVKDMEGAAVAYVADLLKVPAIFVKAVTDIVDGDKPTAEEFLENLSAAAAALQGAVPKVLDFISG 243 (249)
T ss_pred eCCHHHHHHHHHcCCcEEechHHHHHHHHHHhCCCEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98877766777789999999999999999999999999999999998776678999999999999999999999999999
Q ss_pred ccccCC
Q 025413 248 KRFSEL 253 (253)
Q Consensus 248 ~~~~~~ 253 (253)
|-+|+|
T Consensus 244 ~~~~~~ 249 (249)
T PLN02584 244 KCLSEL 249 (249)
T ss_pred CccccC
Confidence 999886
No 2
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=100.00 E-value=7.7e-45 Score=308.71 Aligned_cols=219 Identities=22% Similarity=0.343 Sum_probs=183.6
Q ss_pred cCeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHH
Q 025413 12 ISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (253)
Q Consensus 12 ~~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~ 91 (253)
|++|+||+||++|++++++.++..+.. ..+++++|+|+++|.+|+++.|| ||++|||+++++|+.+
T Consensus 1 ~~~i~Ii~Am~~E~~~l~~~l~~~~~~-----~~~~~~~~~G~~~g~~v~v~~sG---------iG~vnAA~~~~~li~~ 66 (233)
T PRK14697 1 MNRIGIIGAMQIEIDLLLEKLVVQEEQ-----IIAGMPFYVGEFMGTEVIVTRCG---------VGKVNAAACTQTLIHK 66 (233)
T ss_pred CceEEEEecCHHHHHHHHHHhhccceE-----EECCeEEEEEEECCEEEEEEECC---------CCHHHHHHHHHHHHHh
Confidence 468999999999999999999887654 35789999999999999999999 9999999999999999
Q ss_pred cCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCC-Chhhh-----------hcCcceEE
Q 025413 92 LKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFS-TPNLL-----------RELNLKVC 159 (253)
Q Consensus 92 ~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~-~~~l~-----------~~~~~~~G 159 (253)
|+|+.||++|+|||++ +++++|||||++++++||.+... +..+ .+..+.|+ +.+|. .+++++.|
T Consensus 67 f~~~~II~~G~AG~l~-~~l~iGDvVi~~~~~~~D~~~~~--~~~~-~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G 142 (233)
T PRK14697 67 FDVDAIINTGVAGGLH-PDVKVGDIVISTNVTHHDVSKTQ--MKNL-FPFQEEFIASKELVELARKACNSSSLHIEIHEG 142 (233)
T ss_pred cCCCEEEEEecccCCC-CCCCcCCEEEECeeEEcCCChhh--hccc-CCCCcccCCCHHHHHHHHHHhhhccCCccEEEe
Confidence 9999999999999999 69999999999999999987431 1111 11112232 33332 13578999
Q ss_pred EEeeccccccChHhHHHHH-hCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 025413 160 KLSTGDSLDMSSQDETSIT-ANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSV 238 (253)
Q Consensus 160 ~i~sgd~~~~~~~~~~~l~-~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~aa~~~~~~l 238 (253)
+++|||.|+.+++.++.+. +++++++|||+||++++|+.+++||++||+|||.++++.. ++|.++...+++...+.+
T Consensus 143 ~i~SgD~fi~~~~~~~~l~~~~~~~~vdME~aAva~v~~~~~vpfl~iR~ISD~a~~~~~--~~~~~~~~~aa~~~~~~~ 220 (233)
T PRK14697 143 RIVSGECFVEDSKLKAKLIDEYAPHCTEMEGAAIGHVAYINEVPFLVIRCISDSADDEAQ--ISYDDFAKTAANYCSEII 220 (233)
T ss_pred EEEEcCeecCCHHHHHHHHHhcCCeEEEehHHHHHHHHHHcCCCEEEEEEeccCCCCCCc--CCHHHHHHHHHHHHHHHH
Confidence 9999999999988777776 6899999999999999999999999999999999998754 345555667888888999
Q ss_pred HHHhHhhccccc
Q 025413 239 SQVIDFINGKRF 250 (253)
Q Consensus 239 ~~~l~~~~~~~~ 250 (253)
+++++.+++|..
T Consensus 221 ~~~l~~~~~~~~ 232 (233)
T PRK14697 221 VEMLKNISSKTV 232 (233)
T ss_pred HHHHHHhhhccc
Confidence 999999998753
No 3
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=100.00 E-value=3.3e-44 Score=304.73 Aligned_cols=217 Identities=22% Similarity=0.280 Sum_probs=177.7
Q ss_pred cCeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHH
Q 025413 12 ISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (253)
Q Consensus 12 ~~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~ 91 (253)
|++|+||+||++|++++++.+...+.. ...+++||.|+++|++|+++.|| +|++|||++++.|+.+
T Consensus 1 m~~IgIi~Am~~E~~~l~~~l~~~~~~-----~~~~~~~~~g~~~~~~vv~~~sG---------iGkvnAA~~~~~li~~ 66 (236)
T PRK06714 1 MKRIAIVAAWEPELTYLHQSYPSERIE-----KRAAWEFHFHTINDLEIISVITG---------VGKVSCASCVQLLISE 66 (236)
T ss_pred CCeEEEEeeCHHHHHHHHHhccccceE-----EEcCeEEEEEEECCEEEEEEeCC---------CCHHHHHHHHHHHHHh
Confidence 357999999999999999999876554 36789999999999999999999 9999999999999999
Q ss_pred cCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCC---CccccCCCccCCCC-Chhhh-------hcCcceEEE
Q 025413 92 LKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP---VFDLYGVGQRQAFS-TPNLL-------RELNLKVCK 160 (253)
Q Consensus 92 ~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~---~f~~y~~~~~p~~~-~~~l~-------~~~~~~~G~ 160 (253)
|+|+.||++|+|||++ +++++|||||++++++||.+.... .|..|. +..+.++ ++.|. ...+++.|.
T Consensus 67 f~~~~IIn~G~aG~l~-~~l~iGDvVi~~~~~~~D~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~G~ 144 (236)
T PRK06714 67 FQPDELFMTGICGSLS-NKVKNGHIVVALNAIQHDVTAAGSGEDVFNLYN-GRTAPIETTKSLVRRIKKIRSYDPIHFGT 144 (236)
T ss_pred CCCCEEEEEEcccCCC-CCCCCCCEEEECeeeeccCccccCCcccccccC-CccccccCCHHHHHHHHHHhccCCeEEeE
Confidence 9999999999999999 799999999999999999764311 122221 2222333 33443 134689999
Q ss_pred EeeccccccChHhHHHHH-hCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 025413 161 LSTGDSLDMSSQDETSIT-ANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVS 239 (253)
Q Consensus 161 i~sgd~~~~~~~~~~~l~-~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~aa~~~~~~l~ 239 (253)
++|||.|+.+++.++.+. +++++++|||+||+|++|+.+++||++||+|||.++++.. .+|..+..+++++..+.++
T Consensus 145 i~SgD~Fv~~~~~~~~l~~~~~a~~vdME~aAvA~vc~~~~vP~l~IR~ISD~a~~~~~--~~~~~f~~~aa~~sa~~~~ 222 (236)
T PRK06714 145 FLSGDQRIRSSEMRYLLHTVYGALAVDQEVAAFAYVCQINKKPFLCLKAASDQANDKTK--EEQKIFKMLACERACEHLI 222 (236)
T ss_pred EEecCeecCCHHHHHHHHHHCCCeEEEehHHHHHHHHHHhCCCEEEEEEeccCCCCccc--cCHHHHHHHHHHHHHHHHH
Confidence 999999999888777776 5799999999999999999999999999999999997654 4455555666666667777
Q ss_pred HHhHhhc
Q 025413 240 QVIDFIN 246 (253)
Q Consensus 240 ~~l~~~~ 246 (253)
.+|+.+.
T Consensus 223 ~~l~~~~ 229 (236)
T PRK06714 223 AFLRVYE 229 (236)
T ss_pred HHHHHhH
Confidence 7777764
No 4
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=100.00 E-value=1.2e-43 Score=300.80 Aligned_cols=212 Identities=26% Similarity=0.382 Sum_probs=180.4
Q ss_pred eEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcC
Q 025413 14 SVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALK 93 (253)
Q Consensus 14 ~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~ 93 (253)
+|+||+||++|++++++.++..+... ..++.+|+|+++|++|+++.|| ||++|||.++++|+.+|+
T Consensus 1 ~i~ii~Am~~E~~~l~~~l~~~~~~~-----~~~~~~~~g~~~g~~v~i~~sG---------iG~vnAA~~~~~li~~~~ 66 (228)
T TIGR01704 1 KIGIIGAMEEEVTLLRDKIENRQTIS-----LGGCEIYTGQLNGTEVALLKSG---------IGKVAAALGATLLLEHCK 66 (228)
T ss_pred CEEEEecCHHHHHHHHHHhhcCceEE-----ECCeEEEEEEECCEEEEEEECC---------CCHHHHHHHHHHHHHhCC
Confidence 49999999999999999998877642 4679999999999999999999 999999999999999999
Q ss_pred CCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCC-----CChhhh---------hcCcceEE
Q 025413 94 PDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAF-----STPNLL---------RELNLKVC 159 (253)
Q Consensus 94 ~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~-----~~~~l~---------~~~~~~~G 159 (253)
|+.||++|+|||++ +++++|||||+++++++|.+.. .| .|..|+.|.+ ++++|. .+.+++.|
T Consensus 67 p~~II~~G~aG~l~-~~l~~GDvvi~~~~~~~d~~~~--~~-~~~~g~~~~~~~~~~~d~~L~~~~~~~~~~~~~~~~~G 142 (228)
T TIGR01704 67 PDVIINTGSAGGLA-PTLKVGDIVVSDEARYHDADVT--AF-GYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRG 142 (228)
T ss_pred CCEEEEEeeccCCC-CCCccCCEEEEEEEEEccCccc--cc-CCcCCcCCCCCceeeCCHHHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999 6999999999999999997653 23 2555665543 244443 14678999
Q ss_pred EEeeccccccChHhHHHHH-hC-CCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCccHHHHHHHHHHHHHHHHHH
Q 025413 160 KLSTGDSLDMSSQDETSIT-AN-DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQS 237 (253)
Q Consensus 160 ~i~sgd~~~~~~~~~~~l~-~~-~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~aa~~~~~~ 237 (253)
.++|+|.|+.+++..++++ ++ +++++|||++|++++|+.+++||++||+|||.++++.. .+|.++...++....+.
T Consensus 143 ~i~T~d~f~~~~~~~~~l~~~~~~~~~vdME~aAva~va~~~~ip~~~iR~ISD~a~~~~~--~~~~~~~~~aa~~~~~~ 220 (228)
T TIGR01704 143 LIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSH--LSFDEFLAVAAKQSSLM 220 (228)
T ss_pred EEEEcChhcCCHHHHHHHHHHCCcccEecccHHHHHHHHHHhCCCEEEEEEecccCCCccc--cCHHHHHHHHHHHHHHH
Confidence 9999999999998888887 45 89999999999999999999999999999999997754 45556666677777788
Q ss_pred HHHHhHhh
Q 025413 238 VSQVIDFI 245 (253)
Q Consensus 238 l~~~l~~~ 245 (253)
++++|+.+
T Consensus 221 ~~~~~~~~ 228 (228)
T TIGR01704 221 VESLVQKL 228 (228)
T ss_pred HHHHHHhC
Confidence 88888753
No 5
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=100.00 E-value=4.5e-42 Score=287.88 Aligned_cols=210 Identities=23% Similarity=0.253 Sum_probs=178.1
Q ss_pred cCeEEEEEcchHhHHHHHHh-cCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHH
Q 025413 12 ISSVVIIIAMQTEAMPLVNK-FELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQ 90 (253)
Q Consensus 12 ~~~i~Ii~Al~~E~~~~~~~-l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~ 90 (253)
.++|+||+||++|++++++. +...+.. ...++++|.|+++|++|+++.|| +|++|||.+++.||.
T Consensus 3 ~~~I~ii~Am~~E~~~l~~~~~~~~~~~-----~~~~~~~y~~~~~g~~v~~~~sG---------iGkv~aa~~~~~lI~ 68 (218)
T PRK07164 3 EKIIAIIYADNNEFVNLENFEFILLKNI-----ESFQKKIAIFRYKNYNILYINTG---------IGLINAALATQKLIE 68 (218)
T ss_pred ccEEEEEeeCHHHHHHHHHhhhhcceeE-----EecCceEEEEEECCEEEEEEECC---------CCHHHHHHHHHHHHH
Confidence 34799999999999999987 6554433 24678999999999999999999 999999999999999
Q ss_pred HcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCC----CChhhhhcCcceEEEEeeccc
Q 025413 91 ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAF----STPNLLRELNLKVCKLSTGDS 166 (253)
Q Consensus 91 ~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~----~~~~l~~~~~~~~G~i~sgd~ 166 (253)
+|+|+.+|++|+|||+ + ++++||+|+++++++||.+.. + |..++.|.. ++..+ ...++.|.++|||.
T Consensus 69 ~~~~~~iI~~G~aG~l-~-~~~~gdvvi~~~~~~~D~~~~---~--~~~g~~p~~~~~~~~~~~--~~~~~~~~i~SgD~ 139 (218)
T PRK07164 69 KYQIEIIINYGAVGSN-I-NIDLGQVVYPEKFYLLDAITP---W--YPPGQTPGEKEFYENNKI--NKNFNKIHLGSSNS 139 (218)
T ss_pred HcCCCEEEEEEcccCc-C-CCCCCCEEEEeeeEEcccCCc---C--CCcccCCCCcccccchhh--hcCCcEEEEEeCCc
Confidence 9999999999999999 4 899999999999999998532 2 556666643 22222 23466789999999
Q ss_pred cccChHhHHHHHhC-CCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 025413 167 LDMSSQDETSITAN-DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFI 245 (253)
Q Consensus 167 ~~~~~~~~~~l~~~-~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~aa~~~~~~l~~~l~~~ 245 (253)
|+.+++.++.++++ +++++|||+||+|++|+++++||++||+|||.++++ .++++|.++..++++..++.+.++|+.+
T Consensus 140 Fi~~~~~~~~l~~~~~a~~vDME~aAiaqv~~~~~vpf~~ir~ISD~~~~~-~~~~~~~~~~~~a~~~~~~~v~~~l~~~ 218 (218)
T PRK07164 140 FIFDLDKLKIIKDFIFVSFFDMEAFALAQVCFKNKVKFYCIKYVSDFIENN-SDIEIVNNNIKKGSKKALEFIFELLENI 218 (218)
T ss_pred cCCCHHHHHHHHhcCCCcEEEchHHHHHHHHHHcCCCEEEEEEEccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99998888888776 999999999999999999999999999999999644 3567778888888888888899888764
No 6
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=100.00 E-value=1.3e-41 Score=315.53 Aligned_cols=220 Identities=23% Similarity=0.363 Sum_probs=185.0
Q ss_pred cCeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHH
Q 025413 12 ISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (253)
Q Consensus 12 ~~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~ 91 (253)
|++|+||+||++|+.+++++++..+.. ..++++||+|+++|++|+++.|| ||++|||++++.|+.+
T Consensus 1 ~~~i~ii~Am~~E~~~~~~~l~~~~~~-----~~~~~~~~~G~~~g~~v~v~~sG---------iG~v~AA~~~~~li~~ 66 (459)
T PRK06698 1 MNRIGIIGAMQIEIDLLLEKLIMQEEQ-----IIAGMPFYVGEFMGTEVIVTRCG---------VGKVNAAACTQTLIHK 66 (459)
T ss_pred CCeEEEEeeCHHHHHHHHHHhhccceE-----EECCeEEEEEEECCEEEEEEECC---------CCHHHHHHHHHHHHHh
Confidence 458999999999999999999887654 35789999999999999999999 9999999999999999
Q ss_pred cCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCC-CChhhh-------h----cCcceEE
Q 025413 92 LKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAF-STPNLL-------R----ELNLKVC 159 (253)
Q Consensus 92 ~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~-~~~~l~-------~----~~~~~~G 159 (253)
|+|+.||++|+|||++ +++++|||||++++++||.+.. .+..+ .+..+.| ++.+|. + +.+++.|
T Consensus 67 ~~~~~ii~~G~aG~l~-~~l~~gDvvi~~~~~~~d~~~~--~~~~~-~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~G 142 (459)
T PRK06698 67 FDVDAIINTGVAGGLH-PDVKVGDIVISTNVTHHDVSKT--QMKNL-FPFQEEFIASKELVELARKACNSSSLHMEIHEG 142 (459)
T ss_pred cCCCEEEEEecccCCC-CCCcCCCEEEEceeEEccCCcc--ccCCc-CCCCCCcCCCHHHHHHHHHHHHhccCCccEEEe
Confidence 9999999999999999 7999999999999999998643 12111 1111223 344442 1 3578999
Q ss_pred EEeeccccccChHhHHHHH-hCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 025413 160 KLSTGDSLDMSSQDETSIT-ANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSV 238 (253)
Q Consensus 160 ~i~sgd~~~~~~~~~~~l~-~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~aa~~~~~~l 238 (253)
.++|||.|+.+++.++.+. +++++++|||+||++++|+.+++||++||+|||.++++.. .+|.++...+++...+.+
T Consensus 143 ~i~sgd~f~~~~~~~~~l~~~~~a~~veME~aava~va~~~~vp~~~iR~iSD~a~~~~~--~~~~~~~~~a~~~~~~~v 220 (459)
T PRK06698 143 RIVSGECFVEDSKLKAKLIDEYAPHCTEMEGAAIGHVAYINEVPFLVIRCISDSADDEAQ--ISYDDFAKTAANYCSEII 220 (459)
T ss_pred eEEecCeecCCHHHHHHHHHHcCCcEEehhhHHHHHHHHHcCCCEEEEEEeccCCCCCCc--cCHHHHHHHHHHHHHHHH
Confidence 9999999999988888776 6899999999999999999999999999999999997764 445555667777778899
Q ss_pred HHHhHhhcccccc
Q 025413 239 SQVIDFINGKRFS 251 (253)
Q Consensus 239 ~~~l~~~~~~~~~ 251 (253)
+++|+.++.++-+
T Consensus 221 ~~~l~~~~~~~~~ 233 (459)
T PRK06698 221 VEMLKTISSKTYS 233 (459)
T ss_pred HHHHHHhcccccc
Confidence 9999999865544
No 7
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=100.00 E-value=4.8e-40 Score=279.12 Aligned_cols=215 Identities=27% Similarity=0.393 Sum_probs=177.3
Q ss_pred eEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcC
Q 025413 14 SVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALK 93 (253)
Q Consensus 14 ~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~ 93 (253)
+|+|++||++|++++++.++..+... ..++.||+|+++|++|+++.+| ||+++||.+++.++.+++
T Consensus 2 ~i~ii~A~~~E~~~l~~~~~~~~~~~-----~~~~~~~~g~~~g~~v~v~~tG---------~G~~~aa~~~~~li~~~~ 67 (230)
T PRK05584 2 KIGIIGAMEEEVTLLLDKLENAQTIT-----LAGREFYTGTLHGHEVVLVLSG---------IGKVAAALTATILIEHFK 67 (230)
T ss_pred eEEEEccCHHHHHHHHHHhhccceEe-----cCCcEEEEEEECCEEEEEEECC---------cCHHHHHHHHHHHHHhcC
Confidence 69999999999999999999876542 4678999999999999999999 999999999999999999
Q ss_pred CCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCC-C-CChhhh---------hcCcceEEEEe
Q 025413 94 PDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQA-F-STPNLL---------RELNLKVCKLS 162 (253)
Q Consensus 94 ~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~-~-~~~~l~---------~~~~~~~G~i~ 162 (253)
|+.||++|+||+++ +++++|||+++++++++|.+....+|..+..+..|. | ++++|. .+++++.|.++
T Consensus 68 ~~~ii~~G~aG~l~-~~~~~GDvvi~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~d~~L~~~~~~~~~~~~~~~~~G~~~ 146 (230)
T PRK05584 68 VDAVINTGVAGGLA-PGLKVGDVVVADELVQHDVDVTAFGYPYGQVPGLPAAFKADEKLVALAEKAAKELNLNVHRGLIA 146 (230)
T ss_pred CCEEEEEEecCCCC-CCCccCCEEEECeEEEeccCccccCCcCCccCCCCcceeCCHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 99999999999999 699999999999999998764311122111222221 2 344443 14788999999
Q ss_pred eccccccChHhHHHHHh-C-CCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 025413 163 TGDSLDMSSQDETSITA-N-DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQ 240 (253)
Q Consensus 163 sgd~~~~~~~~~~~l~~-~-~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~aa~~~~~~l~~ 240 (253)
|+|.|+.+++..+.+++ + +++++|||++|++++|+++++||++||+|||.+++++. ++|.+++..+++...+.+..
T Consensus 147 s~d~f~~~~~~~~~l~~~~~~~~~veME~aa~a~va~~~~vp~~~ir~vSd~~~~~~~--~~~~~~~~~a~~~~~~~~~~ 224 (230)
T PRK05584 147 SGDQFIAGAEKVAAIRAEFPDALAVEMEGAAIAQVCHEFGVPFVVVRAISDTADDEAH--VSFDEFLAVAAKYSANILKR 224 (230)
T ss_pred EcchhcCCHHHHHHHHHhCCCCeEEechHHHHHHHHHHcCCCEEEEEEeccCCCCccc--ccHHHHHHHHHHHHHHHHHH
Confidence 99999999888888874 6 99999999999999999999999999999999988764 45666666666666677777
Q ss_pred HhHhh
Q 025413 241 VIDFI 245 (253)
Q Consensus 241 ~l~~~ 245 (253)
+++++
T Consensus 225 ~~~~~ 229 (230)
T PRK05584 225 MLEKL 229 (230)
T ss_pred HHHhc
Confidence 77653
No 8
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2e-37 Score=262.70 Aligned_cols=212 Identities=28% Similarity=0.436 Sum_probs=177.9
Q ss_pred CeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHc
Q 025413 13 SSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL 92 (253)
Q Consensus 13 ~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~ 92 (253)
++++|+.|+++|...+.+.+...+... ..+..+|+|.+.+++++++.+| ||+++||..++.++..+
T Consensus 3 ~~i~Ii~a~~~e~~~l~~~~~~~~~~~-----~~~~~~~~g~~~~~~vvl~~sg---------IG~v~aA~~t~~~i~~~ 68 (234)
T COG0775 3 MKIGIIGAMEEEVELLLELLGDAEEIA-----IAGTKFYTGQMAGKEVVLVLSG---------IGKVNAALTTTLLLAKF 68 (234)
T ss_pred eEeehHHhhHHHHHHHHhhccCceEEE-----ecceEEEEEEEcCeEEEEEEeC---------cCHHHHHHHHHHHHHhc
Confidence 479999999999999999986665542 3458999999999999999999 99999999999999999
Q ss_pred CCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccC-CC-----CChhhh---------hcCcce
Q 025413 93 KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQ-AF-----STPNLL---------RELNLK 157 (253)
Q Consensus 93 ~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p-~~-----~~~~l~---------~~~~~~ 157 (253)
+|+.||++|+|||++ +.+++||+|+++++.+||.+.. .|. |+.|+.| .. +++.+. ...+++
T Consensus 69 ~p~~iI~~G~aGgl~-~~~~iGDvvvs~~~~~~D~d~~--~~~-~~~g~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 144 (234)
T COG0775 69 SPDAVINTGSAGGLV-SSLAIGDVVVSDALSYHDVDLT--AFG-YEIGQIPTGEPALFEADEELLDLAGEVAGEGKLRLR 144 (234)
T ss_pred CCCEEEEeeeccCcC-CCCccccEEEEhhHhhhhcccc--ccc-ccCCCCCCccchhccccHHHHHHHHHHHHhcCccee
Confidence 999999999999999 6999999999999999999865 465 8888887 22 233332 146899
Q ss_pred EEEEeeccccccChHhHHHHH-hC-CCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCc--cHHHHHHHHHHHHHH
Q 025413 158 VCKLSTGDSLDMSSQDETSIT-AN-DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKP--TAEEFMQNLVAVTAA 233 (253)
Q Consensus 158 ~G~i~sgd~~~~~~~~~~~l~-~~-~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~--~~~~~~~~~~~aa~~ 233 (253)
.|.++|||+|+.+.+...+++ .+ ++.++|||++|++++|+++++||+.||+|||.+++++. ++++|.+.+++.+
T Consensus 145 ~Gli~tgd~fv~~~~~~~~~~~~~~~a~aveME~aaia~v~~~~~vP~~~ir~ISD~a~~~~~~~~~~~f~~~aa~~s-- 222 (234)
T COG0775 145 TGLIVTGDRFVTLGEPVAKLRKAFPDALAVEMEGAAIAQVCYRFGVPFLVLRAISDIADGGADPVSFDEFLAEAAKQS-- 222 (234)
T ss_pred EEEEEcchhhhhcchhHHHHHHHCCCcEEEEecHHHHHHHHHHhCCCEEEEEEeccCCCCcCCcccHHHHHHHHHHHH--
Confidence 999999999999888766776 45 99999999999999999999999999999999998743 6777777665555
Q ss_pred HHHHHHHHhHhh
Q 025413 234 LEQSVSQVIDFI 245 (253)
Q Consensus 234 ~~~~l~~~l~~~ 245 (253)
+..++++++.+
T Consensus 223 -~~~~~~~~~~l 233 (234)
T COG0775 223 -ALVLLSALEKL 233 (234)
T ss_pred -HHHHHHHHHhc
Confidence 44555555543
No 9
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=100.00 E-value=3.3e-37 Score=260.15 Aligned_cols=198 Identities=24% Similarity=0.363 Sum_probs=161.2
Q ss_pred EEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCC
Q 025413 15 VVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKP 94 (253)
Q Consensus 15 i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~ 94 (253)
|+|++||+.|++++++.++.. |+|+++|++|+++.+| ||+++||.+++.++.+|+|
T Consensus 1 ~~Ii~A~~~E~~~~~~~~~~~---------------~~G~~~g~~v~v~~tG---------iG~v~aA~~~~~~i~~~~~ 56 (222)
T TIGR03664 1 ILIVTAVTAEASALLRGLGGR---------------YAGSVGGAGFDVLVTG---------VGPVNAAAATARLLARAPY 56 (222)
T ss_pred CEEEEeCHHHHHHHHHhcCCC---------------cceeeCCeeEEEEECC---------cCHHHHHHHHHHHHHhCCC
Confidence 689999999999999998642 7899999999999999 9999999999999999999
Q ss_pred CEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCC-Cccc---cCCCccC--------CCC-Chhhh---------h
Q 025413 95 DLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP-VFDL---YGVGQRQ--------AFS-TPNLL---------R 152 (253)
Q Consensus 95 ~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~-~f~~---y~~~~~p--------~~~-~~~l~---------~ 152 (253)
+.+|++|+|||++ +++++||||++++++++|.+...+ +|.. +.++..| .++ +++|. .
T Consensus 57 ~~ii~~G~aG~l~-~~~~~GDvvv~~~~~~~d~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~L~~~~~~~~~~~ 135 (222)
T TIGR03664 57 ELVINAGIAGGFP-GSAAVGDLVVADSEIAADLGAETPEGFLPLEALGFPQLPGGGSSYFNRIPLDPDLVERAVQLLRAL 135 (222)
T ss_pred CEEEEEEEcccCC-CCCCCcCEEEeeeEEEcccCccCCCCccccccCCCCcCCCCCccccccccCCHHHHHHHHHHhhcc
Confidence 9999999999999 689999999999999999774321 1211 1122111 133 44443 1
Q ss_pred cCcceEEEEeeccccccChHhHHHHH-hCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCccHHHHHHHHHHHH
Q 025413 153 ELNLKVCKLSTGDSLDMSSQDETSIT-ANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVT 231 (253)
Q Consensus 153 ~~~~~~G~i~sgd~~~~~~~~~~~l~-~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~aa 231 (253)
+++++.|.++|+|.|+.+.+..+.+. +++++++|||++|++++|+.+++||++||+|||.+++++. ++|+..++.+
T Consensus 136 ~~~~~~G~i~T~d~~~~~~~~~~~l~~~~~a~aveMEsaava~va~~~~vP~~~IR~ISD~~~~~~~--~~w~~~~a~~- 212 (222)
T TIGR03664 136 GLPVARGPFLTVSTVSGTAARAEALARRFGAVAENMEGFAVALAALRYGVPFLELRGISNLVGPRDR--SRWRIKEALA- 212 (222)
T ss_pred CcceeEeeeeeecceeCCHHHHHHHHHhcchHHHHhhHHHHHHHHHHhCCCEEEEEeeccCCCCcch--hhcChHHHHH-
Confidence 46789999999999999988777765 5799999999999999999999999999999999997764 7887776553
Q ss_pred HHHHHHHHHH
Q 025413 232 AALEQSVSQV 241 (253)
Q Consensus 232 ~~~~~~l~~~ 241 (253)
.+.+.+..+
T Consensus 213 -~~~~~~~~~ 221 (222)
T TIGR03664 213 -ALQRAAAKL 221 (222)
T ss_pred -HHHHHHHhh
Confidence 345555443
No 10
>PRK08236 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=248.51 Aligned_cols=179 Identities=23% Similarity=0.359 Sum_probs=145.9
Q ss_pred CeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHc
Q 025413 13 SSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL 92 (253)
Q Consensus 13 ~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~ 92 (253)
++|+|++|++.|++++.+.+.. ++++.++.|| ||++|||++++.+|.+|
T Consensus 2 ~~i~vv~A~~~E~~~l~~~l~~----------------------~~~~~v~~sG---------iGkv~AA~~~~~li~~~ 50 (212)
T PRK08236 2 KRVLVVTAVPAERDAVLRGLGN----------------------DSRFDVLAAG---------VGPAAAAASTARALAAA 50 (212)
T ss_pred ceEEEEEecHHHHHHHHHhccC----------------------CCceEEEEcC---------cCHHHHHHHHHHHHHHh
Confidence 4799999999999999887642 1357888999 99999999999999999
Q ss_pred --CCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCC-Cccc---cCCCccCCC-CChhhh---------hcCcc
Q 025413 93 --KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP-VFDL---YGVGQRQAF-STPNLL---------RELNL 156 (253)
Q Consensus 93 --~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~-~f~~---y~~~~~p~~-~~~~l~---------~~~~~ 156 (253)
+|+.||++|+|||++ +++++||+|+++++++||.+...+ +|.. ..++.. .| .++.|. ..+++
T Consensus 51 ~~~p~~vI~~GvAGgl~-~~l~vGDvVva~~~~~~D~g~~~~~g~~~~~~~~~~~~-~~~~d~~l~~~~~~~l~~~~~~~ 128 (212)
T PRK08236 51 AAPYDLVVSAGIAGGFP-GKAEVGSLVVADEIIAADLGAETPDGFLPVDELGFGTT-TIQVDPALVRQLTEALLAAALGA 128 (212)
T ss_pred ccCCCEEEEEecccCCC-CCCCCCCEEEEeeEEeccCCCCCccCcCccccccCCcc-eecCCHHHHHHHHHHHHhcCCCe
Confidence 999999999999999 699999999999999999775422 1210 111111 12 233332 13678
Q ss_pred eEEEEeeccccccChHhHHHHH-hC-CCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCccHHHHHHH
Q 025413 157 KVCKLSTGDSLDMSSQDETSIT-AN-DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQN 226 (253)
Q Consensus 157 ~~G~i~sgd~~~~~~~~~~~l~-~~-~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~ 226 (253)
+.|+++|+|.|+.+++.++.|+ ++ +++++|||++|++++|+.+++||++||+|||.++..+. ++|+-.
T Consensus 129 ~~G~i~Tgd~~v~~~~~~~~l~~~~~~a~~vdMEgaAvA~vc~~~~vPf~~iR~ISD~~~~rd~--~~W~~~ 198 (212)
T PRK08236 129 TAGPVLTVSTVTGTAETAAALAARHPDAVAEAMEGFGVAEAAAAAGLPVLELRAISNPVGPRDR--AAWRIK 198 (212)
T ss_pred EEeeEEecCeEeCCHHHHHHHHHHCCCceeehhHHHHHHHHHHHhCCCEEEEEEecCCCCccch--hccCHH
Confidence 9999999999999999988887 57 89999999999999999999999999999999987654 556433
No 11
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....
Probab=100.00 E-value=3.9e-35 Score=249.02 Aligned_cols=216 Identities=28% Similarity=0.391 Sum_probs=170.6
Q ss_pred eEEEEEcchHhHHHHHHh-cCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHH-HHHHHHHHH
Q 025413 14 SVVIIIAMQTEAMPLVNK-FELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISAS-LVTYASIQA 91 (253)
Q Consensus 14 ~i~Ii~Al~~E~~~~~~~-l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa-~~~~~li~~ 91 (253)
+|+||||++.|++++.+. +...+... ....+++|+|++++++++++.+| +|+++++ .+++.++++
T Consensus 1 ~i~ii~a~~~e~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~v~i~~~g---------~G~~~aa~~~~~~~l~~ 67 (234)
T PF01048_consen 1 RIGIICAMPEEAEALADLPLEETPYFR----ENRGFTYYTGKYGGKNVVIVSTG---------MGPVNAAVIATQRLLEE 67 (234)
T ss_dssp EEEEEESSHHHHHHHHHHEEEEEEEEE----ECTTEEEEEEEETTEEEEEEEES---------SSHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHhhcccCCCccc----cCCCcEEEEEEECCEEEEEEECC---------cCCchHHHHHHHHHHHh
Confidence 699999999999999999 33322221 24689999999999999999999 9999999 999999999
Q ss_pred cCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCcc---ccCCCccCCCCChhhh---------hcCcceEE
Q 025413 92 LKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFD---LYGVGQRQAFSTPNLL---------RELNLKVC 159 (253)
Q Consensus 92 ~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~---~y~~~~~p~~~~~~l~---------~~~~~~~G 159 (253)
++|+.||++|+|||++ +++++||+|+++.++++|.......+. .|.....+..+++.|. .+++++.|
T Consensus 68 ~~~~~vi~~G~~G~~~-~~~~~GDvvi~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G 146 (234)
T PF01048_consen 68 FGPDLVIMIGICGGLD-PDIKLGDVVIPQDAIRYDGDSPSFFFDEEPPYAPVSRPAPADPDLREALKEAAKALGIPVHEG 146 (234)
T ss_dssp CTSSEEEEEEEEEESS-TTS-TTEEEEEEEEEEESSHHGHHSSETTSGTSTSCSTEESHHHHHHHHHHHHHHTTSTEEEE
T ss_pred CCCeEEEEeccccccc-cccccceEEecccEEeccCccccccccccccccccccccccCHHHHHHHHHhhhccccccccc
Confidence 9999999999999999 699999999999999988764311110 1211111111334442 25789999
Q ss_pred EEeeccccccChHhH-HHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCC---CCccHHHHHHHHHHHHHHHH
Q 025413 160 KLSTGDSLDMSSQDE-TSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDG---DKPTAEEFMQNLVAVTAALE 235 (253)
Q Consensus 160 ~i~sgd~~~~~~~~~-~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~---~~~~~~~~~~~~~~aa~~~~ 235 (253)
.++|+|.|+.+.... +.+++++++++|||+++++++|+++++||++||+|||++++ +.++.+++.+....++....
T Consensus 147 ~~~s~~~~~~~~~~~~~~~~~~g~~~vdME~aa~~~~a~~~~ip~~~i~~isD~~~~~~~~~~~~~~~~~~~~~a~~~~~ 226 (234)
T PF01048_consen 147 PIASGDSFYRETEAEIELLQKFGADAVDMESAAVAQAARERGIPFIAIRGISDYADGGDDDEWTFEEFKEFLQLAAENAA 226 (234)
T ss_dssp EEEEESSSSGSHHHHHHHHHHTTEEEEESSHHHHHHHHHHTT-EEEEEEEEEEETTTTSSSSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeeccchhhHHHHHHhcccccccchHHHHHHHHHHcCCCEEEEEEEEcCCccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999998644 44557899999999999999999999999999999998765 22355778888888888888
Q ss_pred HHHHHHhH
Q 025413 236 QSVSQVID 243 (253)
Q Consensus 236 ~~l~~~l~ 243 (253)
+++.++|+
T Consensus 227 ~~~~~~l~ 234 (234)
T PF01048_consen 227 AILEELLK 234 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88888774
No 12
>PRK11178 uridine phosphorylase; Provisional
Probab=100.00 E-value=1.9e-33 Score=241.05 Aligned_cols=208 Identities=13% Similarity=0.105 Sum_probs=165.7
Q ss_pred CeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHc
Q 025413 13 SSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL 92 (253)
Q Consensus 13 ~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~ 92 (253)
.+++|++|+++|++.+.+.|+..+... ..+++++|+|+|+|++|+++.+| ||+++|++++++|+. +
T Consensus 17 ~~i~Ii~g~p~e~~~ia~~l~~~~~~~----~~~~~~~~~G~~~g~~v~v~~~G---------iG~~~Aa~~~~eLi~-~ 82 (251)
T PRK11178 17 ATLAIVPGDPERVEKIAALMDNPVFLA----SHREFTSWRAELDGKPVIVCSTG---------IGGPSTSIAVEELAQ-L 82 (251)
T ss_pred CCEEEECCCHHHHHHHHHHhccchhee----eccCeEEEEEEEcCEEEEEEecC---------CCHHHHHHHHHHHHH-c
Confidence 469999999999999999998776532 36789999999999999999999 999999999999886 7
Q ss_pred CCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCCChhh----h-----hcCcceEEEEee
Q 025413 93 KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNL----L-----RELNLKVCKLST 163 (253)
Q Consensus 93 ~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~~~~l----~-----~~~~~~~G~i~s 163 (253)
+|+.||++|+|||++ +++++||+||++.++++|.... .|.+++.|..++.++ . .+.+++.|.++|
T Consensus 83 g~~~iI~~GtaG~l~-~~l~~GDvVI~~~a~~~Dg~s~-----~y~~~~~p~~~~~~~~~~L~~~~~~~~~~~~~G~i~S 156 (251)
T PRK11178 83 GVRTFLRIGTTGAIQ-PHINVGDVLVTTASVRLDGASL-----HFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTAS 156 (251)
T ss_pred CCCEEEEEeccccCC-CCCCCCCEEEecceecCCCCcc-----ccCCCCcCCCCCHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 999999999999999 7999999999999999997642 366666665544332 2 257899999999
Q ss_pred ccccccChHh---------------HHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCC-ccHHHHHHHH
Q 025413 164 GDSLDMSSQD---------------ETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDK-PTAEEFMQNL 227 (253)
Q Consensus 164 gd~~~~~~~~---------------~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~-~~~~~~~~~~ 227 (253)
+|.|+.++++ .+.+++++++++|||++|++++|+.+|+++.+|..+......+. .+.+...+..
T Consensus 157 ~D~Fy~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~avEMEsAAla~va~~~gv~a~~v~~~~~~r~~~~~~~~~~~~~~~ 236 (251)
T PRK11178 157 SDTFYPGQERYDTYSGRVVRRFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQEIPNAETMKQTE 236 (251)
T ss_pred cCcccCCCCccccccccchhhHHHHHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEEEecccccccCchHHHHHHH
Confidence 9999976532 33445569999999999999999999999999987777754433 2334444554
Q ss_pred HHHHHHHHHHHHH
Q 025413 228 VAVTAALEQSVSQ 240 (253)
Q Consensus 228 ~~aa~~~~~~l~~ 240 (253)
.++.+..++.+..
T Consensus 237 ~~~~~~~l~~~~~ 249 (251)
T PRK11178 237 SHAVKIVVEAARR 249 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
No 13
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=100.00 E-value=4.5e-34 Score=236.65 Aligned_cols=187 Identities=24% Similarity=0.363 Sum_probs=145.3
Q ss_pred CeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHc
Q 025413 13 SSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQAL 92 (253)
Q Consensus 13 ~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~ 92 (253)
++++|++|++.|+.++. +.+++++.|| |||+|||++++.+|.+|
T Consensus 11 ~~~l~~~A~~~E~~~~~---------------------------~~~v~l~~sG---------IGKVnAA~~t~~lI~~f 54 (212)
T PRK06026 11 KRVLFVMAADAEYGPHL---------------------------RARFTPLMTG---------VGPVEAAVNLTAALARL 54 (212)
T ss_pred ccEEEEEecHHHHhhcc---------------------------cCCeEEEEcC---------eeHHHHHHHHHHHHHHh
Confidence 57999999999998754 1247899999 99999999999999999
Q ss_pred C-----CCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCCChh---hhhcC-cceEEEEee
Q 025413 93 K-----PDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPN---LLREL-NLKVCKLST 163 (253)
Q Consensus 93 ~-----~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~~~~---l~~~~-~~~~G~i~s 163 (253)
+ |+.||++|+|||. ++++||||+++++++||.+.+ .| .|+.|+.|..+.+. +.... ....|.+.|
T Consensus 55 ~~~~~~pd~IIn~GvAGg~---~l~igDvViat~~~~hD~d~~--~~-g~~~g~~p~~~~~~~~~l~~~~~~~~~~~i~t 128 (212)
T PRK06026 55 KAAGDLPDLVVSLGSAGSA---KLEQTEVYQVSSVSYRDMDAS--PL-GFEKGVTPFLDLPATVELPLRIPGIPEASLST 128 (212)
T ss_pred hccCCCCCEEEEecccCCC---CCccCCEEEEeeEEEcCCCCc--cc-CCcccccCCCCCchhHHHHHHHhhhhccccee
Confidence 8 9999999999993 589999999999999998765 34 36678877543322 21111 233455566
Q ss_pred ccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhH
Q 025413 164 GDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVID 243 (253)
Q Consensus 164 gd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~aa~~~~~~l~~~l~ 243 (253)
++.|+.... +++++++++|||++|++++|+.+++||++||+|||.++++.. .++|.++..+++++..+.+..++.
T Consensus 129 gg~~vsgd~----f~~~~a~~vdMEgaAvAqVc~~~~vPfl~iR~ISD~a~~~a~-~~df~~f~~~aa~~sa~~v~~~~~ 203 (212)
T PRK06026 129 GGNIVSGAA----YDAIDADMVDMETYAVLRACQAFGVPLIGLRGISDGAAELKH-VGDWTEYLHVIDEKLAGAVDRLER 203 (212)
T ss_pred cCEEeeCch----hhhcCCeEEechHHHHHHHHHHcCCCEEEEEEEecCCCcccc-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666665432 245799999999999999999999999999999999986643 234666666677777777777777
Q ss_pred hhc
Q 025413 244 FIN 246 (253)
Q Consensus 244 ~~~ 246 (253)
.++
T Consensus 204 ~~~ 206 (212)
T PRK06026 204 ALE 206 (212)
T ss_pred HHh
Confidence 665
No 14
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=6.4e-33 Score=235.92 Aligned_cols=205 Identities=19% Similarity=0.216 Sum_probs=161.8
Q ss_pred cccCeEEEEEcchHhHHHHHH-hcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHH
Q 025413 10 EAISSVVIIIAMQTEAMPLVN-KFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYAS 88 (253)
Q Consensus 10 ~~~~~i~Ii~Al~~E~~~~~~-~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~l 88 (253)
....+..|++..|.+++.+.. .++..+... ..+++.+|+|+++|++|+++.|| ||+++|++++++|
T Consensus 10 ~~~~~~vi~~Gdp~r~~~ia~~~l~~~~~~~----~~r~~~~~~G~~~g~~v~v~~tG---------iG~~~aai~~~eL 76 (235)
T PRK05819 10 GDIADTVLMPGDPLRAKYIAETFLEDVVCVN----EVRGMLGFTGTYKGKRVSVMGTG---------MGIPSISIYANEL 76 (235)
T ss_pred cccCCeEEecCCHHHHHHHHHHHhcCcEeee----eeccEEEEEEEECCEEEEEEecC---------CChhHHHHHHHHH
Confidence 345679999999999999987 466655432 46789999999999999999999 9999999999999
Q ss_pred HHHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCCChhhh---------hcCcceEE
Q 025413 89 IQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVC 159 (253)
Q Consensus 89 i~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~~~~l~---------~~~~~~~G 159 (253)
++.++|+.||++|+|||++ +++++||+||++.+++ |.+.. .+ .|.....|..++++|. .+++++.|
T Consensus 77 i~~~~~~~iI~~GtaG~l~-~~l~iGDvVI~~~a~~-~~~~~--~~-~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~G 151 (235)
T PRK05819 77 ITDYGVKKLIRVGSCGALQ-EDVKVRDVVIAMGAST-DSNVN--RI-RFKGHDFAPIADFDLLRKAYDAAKEKGITVHVG 151 (235)
T ss_pred HHhcCCcEEEEEecccCCC-CCCCCCCEEEEceeEe-cCCcc--cc-ccCCCCcCccCCHHHHHHHHHHHHHCCCcEEEE
Confidence 9889999999999999999 6999999999999875 43332 11 2332223333455553 24678999
Q ss_pred EEeeccccccChHh-HHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCc-cHHHHHHHHHHHHH
Q 025413 160 KLSTGDSLDMSSQD-ETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKP-TAEEFMQNLVAVTA 232 (253)
Q Consensus 160 ~i~sgd~~~~~~~~-~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~-~~~~~~~~~~~aa~ 232 (253)
.++|+|.|+.+.+. .+.+++++++++|||++|++++|+.+++||++||+|||....... +.+++.+...++..
T Consensus 152 ~v~T~D~f~~~~~~~~~~~~~~g~~~vEME~aAva~va~~~~ip~~~i~~isd~~~~~~~~~~~~~~~~~~~~~~ 226 (235)
T PRK05819 152 NVFSADLFYNPDPEMFDVLEKYGVLGVEMEAAALYGLAAKYGVKALTILTVSDHIVTGEATTAEERQTTFNDMIE 226 (235)
T ss_pred EEEecCcccCCCHHHHHHHHHcCCeEEeccHHHHHHHHHHhCCCEEEEEEEeeecccCCCCChHHHHHHHHHHHH
Confidence 99999999998764 455567899999999999999999999999999999999876543 33444444333333
No 15
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=100.00 E-value=5.1e-33 Score=236.07 Aligned_cols=188 Identities=18% Similarity=0.191 Sum_probs=153.8
Q ss_pred cCeEEEEEcchHhHHHHHH-hcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHH
Q 025413 12 ISSVVIIIAMQTEAMPLVN-KFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQ 90 (253)
Q Consensus 12 ~~~i~Ii~Al~~E~~~~~~-~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~ 90 (253)
..++.|++..|..++.+.+ .++..+... ..+++.+|+|+|+|++|+++.+| ||+++|++++++|+.
T Consensus 13 ~~~~vi~~Gdp~R~~~~a~~~~~~~~~~~----~~~~~~~~~G~~~g~~v~v~~~G---------iG~~~Aai~~~eLi~ 79 (233)
T PRK13374 13 FAETVLMPGDPLRAKYIAETYLEDVVQVT----DVRNMFGFTGTYKGKKVSVMGHG---------MGIPSMVIYVHELIA 79 (233)
T ss_pred cCCeEEecCCHHHHHHHHHHHhcCceeee----cccceEEEEEEECCEEEEEEeCC---------CCHhHHHHHHHHHHH
Confidence 3478999999999999985 677666542 46789999999999999999999 999999999999999
Q ss_pred HcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCCChhhh---------hcCcceEEEE
Q 025413 91 ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKL 161 (253)
Q Consensus 91 ~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~~~~l~---------~~~~~~~G~i 161 (253)
+++|+.+|++|+|||++ +++++||+||++.++ +|.+.. ...+.....|..++++|. .+++++.|.+
T Consensus 80 ~~g~~~iI~~GtaG~l~-~~l~~GDvVI~~~a~-~d~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~G~i 154 (233)
T PRK13374 80 TFGVKNIIRVGSCGATQ-DDVKLMDVIIAQGAS-TDSKTN---RIRFSGHDFAAIADYQLLEKAVETAREKGVPVKVGNV 154 (233)
T ss_pred HcCCcEEEEEeccccCC-CCCCCCCEEEEeeeE-ecCchh---hhccCCCCcCCCCCHHHHHHHHHHHHHcCCCeEEEEE
Confidence 89999999999999999 799999999999886 554432 101111112222344432 2568999999
Q ss_pred eeccccccChHhHHH-HHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCC
Q 025413 162 STGDSLDMSSQDETS-ITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDK 217 (253)
Q Consensus 162 ~sgd~~~~~~~~~~~-l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~ 217 (253)
+|+|.|+.+.+.... +++++++++|||++|++++|+.+++|+++||+|||.+....
T Consensus 155 ~T~D~F~~~~~~~~~~~~~~g~~~vEME~aAl~~va~~~gip~~~i~~isD~~~~~~ 211 (233)
T PRK13374 155 FSSDLFYDPDEDAIEAMERFGILGVDMEVAGLYGLAAYLGAEALAILTVSDHIITGE 211 (233)
T ss_pred EEcCcccCCChHHHHHHHHcCCeEEehhHHHHHHHHHHcCCCEEEEEEEEeeeccCC
Confidence 999999998765444 45789999999999999999999999999999999998654
No 16
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=100.00 E-value=1.2e-33 Score=233.68 Aligned_cols=187 Identities=21% Similarity=0.312 Sum_probs=149.5
Q ss_pred cccccCeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHH
Q 025413 8 SQEAISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYA 87 (253)
Q Consensus 8 ~~~~~~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~ 87 (253)
+...+++++|++|++.|..++.. ..+.++.|| |||+|||++++.
T Consensus 6 ~~~~~~~~l~v~a~~~e~~~~~~---------------------------~~~~l~~sG---------IGKVNAA~~~~~ 49 (212)
T TIGR01705 6 SHIADKDVLFVMAAQAEYGPHLQ---------------------------ALFAPLMTG---------VGPVEAAIRVGA 49 (212)
T ss_pred ccccCccEEEEEeeHHHhhhccc---------------------------CCeeEEEcC---------ccHHHHHHHHHH
Confidence 34456789999999999887432 125678999 999999999999
Q ss_pred HHHHc-----CCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCC---Chhhh-------h
Q 025413 88 SIQAL-----KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFS---TPNLL-------R 152 (253)
Q Consensus 88 li~~~-----~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~---~~~l~-------~ 152 (253)
+|.+| +|+.|||+|+|||++ +++||||++++++|||.+.. .| .|..|+.|..+ +..|. .
T Consensus 50 lI~~f~~~~~~pd~VIN~GvAG~~~---~~igDIVi~t~~~~hDvd~t--~~-gy~~GqiP~~~~~~~~~l~~~~~~~~~ 123 (212)
T TIGR01705 50 ELAGLDAADALPDLVVSLGSAGSRT---LEQTEIYQAVSVSYRDIDAS--AF-GFEKGATPFLDLPAEAALPFRIPDIAE 123 (212)
T ss_pred HHHhhhhccCCCCEEEEecccCCCC---CccCCEEEEeeEEEcCcCcc--cc-CCccccCCCCCCCchhhHHHHHHHHHh
Confidence 99985 899999999999954 67999999999999998865 35 47778887642 22222 1
Q ss_pred cCcceEEEEeeccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCccHHHHHHHHHHHHH
Q 025413 153 ELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTA 232 (253)
Q Consensus 153 ~~~~~~G~i~sgd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~aa~ 232 (253)
....+.|.++|||.| .+++++++|||++|++++|+.+++||++||+|||.++++.. .++|.++..++++
T Consensus 124 ~~~~~~g~~vSgd~f----------~~~~a~~vdME~aAia~vc~~~~vpf~~iR~ISD~a~~~~~-~~df~~f~~~aa~ 192 (212)
T TIGR01705 124 ARLSTGGAIISGAAY----------DAIAADMVDMETFACLRACQLFDVPLIGLRGISDGAADLNH-VDDWTAYLDIIDE 192 (212)
T ss_pred ccCcceeEEEECcch----------hhCCceEEechHHHHHHHHHHcCCCEEEEEEEecCCCCccc-hhhHHHHHHHHHH
Confidence 223678899999876 24689999999999999999999999999999999876543 2446666777777
Q ss_pred HHHHHHHHHhHhhcc
Q 025413 233 ALEQSVSQVIDFING 247 (253)
Q Consensus 233 ~~~~~l~~~l~~~~~ 247 (253)
+..+.+.++++++..
T Consensus 193 ~sa~~v~~ll~~~~~ 207 (212)
T TIGR01705 193 KLADAVDRLCQAIED 207 (212)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777888888888763
No 17
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria.
Probab=100.00 E-value=1.7e-32 Score=232.77 Aligned_cols=209 Identities=20% Similarity=0.227 Sum_probs=164.3
Q ss_pred cCeEEEEEcchHhHHHHHH-hcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHH
Q 025413 12 ISSVVIIIAMQTEAMPLVN-KFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQ 90 (253)
Q Consensus 12 ~~~i~Ii~Al~~E~~~~~~-~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~ 90 (253)
..+..|++..|.+++.+.+ .+++.+... ..+++.+|+|+++|++|+++.+| ||+++|++++++|+.
T Consensus 9 ~~~~vi~~Gdp~r~~~ia~~~~~~~~~~~----~~r~~~~~~G~~~g~~v~v~~~G---------~G~~~aai~~~eli~ 75 (232)
T TIGR00107 9 IADVVLMPGDPLRAKYIAETFLEDAKEVN----EVRGMLGFTGTYKGKKISVMGHG---------MGIPSISIYVYELIK 75 (232)
T ss_pred cCCeEEeCCCHHHHHHHHHHHhcCcEeee----eecceEEEEEEECCEEEEEEeCC---------CCHhHHHHHHHHHHH
Confidence 4578999999999998886 566655432 46789999999999999999999 999999999999998
Q ss_pred HcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCCChhhh---------hcCcceEEEE
Q 025413 91 ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKL 161 (253)
Q Consensus 91 ~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~~~~l~---------~~~~~~~G~i 161 (253)
.++|+.||++|+|||++ +++++||+||++.++++|.... . .|.....|..++++|. .+++++.|.+
T Consensus 76 ~~~~~~iI~~Gt~G~l~-~~~~~GdvvI~~~a~~~~~~~~---~-~~~~~~~~~~ad~~l~~~l~~~~~~~~~~~~~G~~ 150 (232)
T TIGR00107 76 FYEVKTIIRIGSCGAIR-PDVKLRDVIIAMGASTDSKYNR---V-RFVEVDFAAIADFELVELAYQTAKALGLDFHVGNV 150 (232)
T ss_pred HcCCCEEEEEeccccCC-CCCCCCCEEEECceeccCCcch---h-hcCCCCcCccCCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 89999999999999999 6999999999999988774211 0 1211122333455442 2468999999
Q ss_pred eeccccccChHh-HHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCc-cHHHHHHHHHHHHHHHHHHH
Q 025413 162 STGDSLDMSSQD-ETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSV 238 (253)
Q Consensus 162 ~sgd~~~~~~~~-~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~-~~~~~~~~~~~aa~~~~~~l 238 (253)
+|+|.|+.+.+. .+.+++++++++|||++|++++|+.+++|+++||+|||....... +.+++.+..+++....++.+
T Consensus 151 ~S~D~f~~~~~~~~~~~~~~g~~~vEME~aal~~va~~~~~~~~~i~~vsd~~~~~~~~~~~~~~~~~~~~~~~al~~~ 229 (232)
T TIGR00107 151 FSADAFYQPDKDVFDLMAKYGILAVEMEAAALYANAAELGAKALTILTVSDHLVTHEALTAEERQTTFKDMIILALEMV 229 (232)
T ss_pred eEcCcccCCCHHHHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEEEeecccCCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999997654 455667899999999999999999999999999999998865443 34555555554444444433
No 18
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=100.00 E-value=4e-32 Score=232.33 Aligned_cols=209 Identities=16% Similarity=0.146 Sum_probs=165.7
Q ss_pred ccCeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHH
Q 025413 11 AISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQ 90 (253)
Q Consensus 11 ~~~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~ 90 (253)
.+.+..|+++.|+|++.+.+.|...+... ..+++.+|+|+++|++|+++.+| ||+++|++++++|++
T Consensus 10 d~~~~vi~~Gdp~r~~~ia~~l~~~~~~~----~~r~~~~~~G~~~g~~v~v~~~G---------iG~~~aai~~~eLi~ 76 (245)
T TIGR01718 10 DIQTYVILPGDPDRVEKIAAHMDKPVKVA----SNREFVTYRGELDGKPVIVCSTG---------IGGPSTAIAVEELAQ 76 (245)
T ss_pred hcCCeEEecCCHHHHHHHHHhcCCcEEEe----ccCCEEEEEEEECCEEEEEEcCC---------CCHHHHHHHHHHHHH
Confidence 34579999999999999999997766432 35778999999999999999999 999999999999997
Q ss_pred HcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCCChhhh---------hcCcceEEEE
Q 025413 91 ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKL 161 (253)
Q Consensus 91 ~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~~~~l~---------~~~~~~~G~i 161 (253)
++++.||++|+|||++ +++++||+||++.++++|.... .|..+..|..+++++. .+.+++.|++
T Consensus 77 -~g~~~iIr~GtaG~l~-~~~~~GDiVI~~~a~~~Dg~~~-----~y~~~~~p~~~d~~l~~~l~~~~~~~~~~~~~G~v 149 (245)
T TIGR01718 77 -LGARTFIRVGTTGAIQ-PHINVGDVLITTAAVRLDGASL-----HYAPLEFPAVADFEVTTALVEAAESIGVRHHVGVV 149 (245)
T ss_pred -hCCCEEEEeeccccCC-CCCCCCCEEEeCceecCCCccc-----ccCCCCcCCCCCHHHHHHHHHHHHHcCCCeEEEEE
Confidence 8999999999999999 7999999999999999996532 3556666665555442 2578999999
Q ss_pred eeccccccChHh--------------HHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCc-cHHHHHHH
Q 025413 162 STGDSLDMSSQD--------------ETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKP-TAEEFMQN 226 (253)
Q Consensus 162 ~sgd~~~~~~~~--------------~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~-~~~~~~~~ 226 (253)
+|+|.|+.++++ .+.+++++++++|||+||++++|+.+|+|+.+|.++++....... +.++..+-
T Consensus 150 ~T~D~F~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vEME~aal~~va~~~gi~~~~v~~~~~~~~~~~~~~~~~~~~~ 229 (245)
T TIGR01718 150 ASSDTFYPGQERDTYSGRVVRHFKGSMEAWQAMGVLNYEMESATLFTLCSSQGLRAGMVAGVIVNRTQQEIPNEETMKQT 229 (245)
T ss_pred EECCcCcCCCCccccccccchhHHHHHHHHHHcCceEehhhHHHHHHHHHHcCCcEEEEEEEEecccccccCchHHHHHh
Confidence 999999986542 223445799999999999999999999999999998888754432 23333344
Q ss_pred HHHHHHHHHHHHH
Q 025413 227 LVAVTAALEQSVS 239 (253)
Q Consensus 227 ~~~aa~~~~~~l~ 239 (253)
..++.+..++.+.
T Consensus 230 ~~~~i~~al~a~~ 242 (245)
T TIGR01718 230 EEHAIKVAVEAVK 242 (245)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 19
>PRK05634 nucleosidase; Provisional
Probab=100.00 E-value=1.1e-31 Score=220.10 Aligned_cols=180 Identities=27% Similarity=0.362 Sum_probs=138.5
Q ss_pred cccCeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHH
Q 025413 10 EAISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASI 89 (253)
Q Consensus 10 ~~~~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li 89 (253)
|.+++++|++|++.|+..+.+ .+.++.|| ||++|||++++++|
T Consensus 1 ~~~~~~l~v~a~~~E~~~~~~----------------------------~~~~~~sG---------IGkvnaA~~~~~~L 43 (185)
T PRK05634 1 MSMTRVLVVSATKEEAVYVPA----------------------------GLPLLITG---------IGKVAAAVALTRAL 43 (185)
T ss_pred CCcccEEEEEecHHHHhhccC----------------------------CCEEEEcC---------CCHHHHHHHHHHHH
Confidence 456789999999999975310 25677889 99999999988877
Q ss_pred H--HcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCC-ccccCCCccCCCCChhhhhcCcceEEEEeeccc
Q 025413 90 Q--ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPV-FDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDS 166 (253)
Q Consensus 90 ~--~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~-f~~y~~~~~p~~~~~~l~~~~~~~~G~i~sgd~ 166 (253)
. +++|+.||++|+|||++ +++. |++++++++++|.+...-. +..|..++.+.++ ....|.++|||.
T Consensus 44 ~~~~~~p~~iIn~G~AG~l~-~~l~--~vv~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~--------~~~~g~i~sgD~ 112 (185)
T PRK05634 44 ARRGVLPPRVVNIGTAGALR-DGLS--GVFEPSHVINHDFSSDLIRALTGHPVANRLELP--------TGDGAVLATGDA 112 (185)
T ss_pred HhcCCCCCEEEEeecccCCC-cCCC--eEEEEeeEEEcccCccccccccCcccccccccc--------cCCCceEecCCc
Confidence 5 58999999999999999 5655 8999999999997653100 0012111111111 123589999999
Q ss_pred cccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 025413 167 LDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQ 240 (253)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~aa~~~~~~l~~ 240 (253)
|+.+++.++++++ +++++|||++|++++|+++++||++||+|||.++++.. ++|.++...+++++.+.+++
T Consensus 113 fvs~~~~~~~l~~-~a~~vDME~aAva~va~~~~vPf~~iR~ISD~a~~~~~--~~~~~~~~~aa~~~~~~~~~ 183 (185)
T PRK05634 113 FISDTATRDRLAQ-RADLVDMEGYAVAAVAAEFGVPCRLVKHVSDSADESAL--GSWPEAVDASARELGEWLAE 183 (185)
T ss_pred eecCHHHHHHHhc-cCeEEecHHHHHHHHHHHhCCCEEEEEEeccCCCCccc--ccHHHHHHHHHHHHHHHHHh
Confidence 9999887777765 78999999999999999999999999999999997654 56777777777777765553
No 20
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=99.98 E-value=1.9e-30 Score=223.85 Aligned_cols=219 Identities=15% Similarity=0.168 Sum_probs=171.9
Q ss_pred cCeEEEEEcchHhHHHHHHhc-CccccCccCCCCCCCeEEEEEEECCeeEE-EEecCCCCCCCcCCcC------hhHHHH
Q 025413 12 ISSVVIIIAMQTEAMPLVNKF-ELKEDQDSVFPEGVPWVRYHGTYKDLHLN-IIWPGKDTSLEVDSVG------TISASL 83 (253)
Q Consensus 12 ~~~i~Ii~Al~~E~~~~~~~l-~~~~~~~~~~~~~~~~~~~~g~~~g~~v~-l~~~G~~~~~~~~giG------~~~aa~ 83 (253)
|++|+||+++..|...+.+.+ +..... ..+...++.|+++|++|+ +.++| +| ++|+++
T Consensus 1 ~~~igII~gsgl~~~~l~~~~~~~~~~~-----~~g~~~~~~G~~~g~~Vv~l~~~G---------~gh~~~~~kVn~~a 66 (261)
T PRK08666 1 MVRIAIIGGSGVYDPKILENIREETVET-----PYGEVKVKIGTYAGEEVAFLARHG---------EGHSVPPHKINYRA 66 (261)
T ss_pred CCcEEEEecCCCCccchhhhcccceeEe-----eCCCCEEEEEEECCEEEEEEeCCC---------CCCccChhhcchHH
Confidence 358999999999987787777 333222 245679999999999997 57899 78 999877
Q ss_pred HHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCc--cC-CC-CChhhh--------
Q 025413 84 VTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQ--RQ-AF-STPNLL-------- 151 (253)
Q Consensus 84 ~~~~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~--~p-~~-~~~~l~-------- 151 (253)
.++. +++++++.||++|+|||++ +++++||+||+++.+++|.+.+...|+....+. .+ .+ .|++|.
T Consensus 67 ~~~~-l~~~Gv~~II~tgsaGsl~-~~l~~GDiVi~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~L~~~~~~~a~ 144 (261)
T PRK08666 67 NIWA-LKELGVERILATSAVGSLN-PNMKPGDFVILDQFLDFTKNRHYTFYDGGESGVVHVDFTDPYCPELRKALITAAR 144 (261)
T ss_pred HHHH-HHHCCCCEEEEeccccccC-CCCCCCCEEeehhhhhcCCCCCccccCCCCCCcCCCCCCcccCHHHHHHHHHHHH
Confidence 7665 7889999999999999999 799999999999999999764322222111221 11 11 145553
Q ss_pred -hcCcceEEEE---eeccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCC--C-CccHHHHH
Q 025413 152 -RELNLKVCKL---STGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDG--D-KPTAEEFM 224 (253)
Q Consensus 152 -~~~~~~~G~i---~sgd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~--~-~~~~~~~~ 224 (253)
.+++++.|.+ .+||.|....+ .+.++++|+++||||+++++++|+++|+|+++|+.|||.++. + ..++++|.
T Consensus 145 ~~g~~~~~ggvy~~~~Gp~fet~ae-~~~~~~~gad~V~Me~~~e~~~A~~~gi~~~~i~~vsn~a~~~~~~~~~~~e~~ 223 (261)
T PRK08666 145 ELGLTYHPGGTYVCTEGPRFETAAE-IRMFRILGGDLVGMTQVPEAVLARELEMCYATVAIVTNYAAGISPTKLTHSEVV 223 (261)
T ss_pred HCCCceEeccEEEEeeCCCcCCHHH-HHHHHHcCCCEEccchHHHHHHHHHCCCcEEEEEEEeeccccCCCCCCCHHHHH
Confidence 2467787533 67999965554 456778899999999999999999999999999999999973 2 34899999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcc
Q 025413 225 QNLVAVTAALEQSVSQVIDFING 247 (253)
Q Consensus 225 ~~~~~aa~~~~~~l~~~l~~~~~ 247 (253)
+.++++++.+.+.|.++++.+..
T Consensus 224 ~~~~~~~~~~~~ll~~~~~~~~~ 246 (261)
T PRK08666 224 ELMAQNSENIKKLIMKAIELIPK 246 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999998863
No 21
>PRK07115 AMP nucleosidase; Provisional
Probab=99.98 E-value=2.6e-30 Score=221.56 Aligned_cols=180 Identities=16% Similarity=0.120 Sum_probs=146.0
Q ss_pred cCeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHH
Q 025413 12 ISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (253)
Q Consensus 12 ~~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~ 91 (253)
+++.+|++..|..++.+.+.++..... ....+..|+ |.+|+++.+| ||+++|++++++|+.
T Consensus 23 ~~~~vl~~gdp~r~~~ia~~~~~~~~~-----~~r~~~~~~----g~~vsv~~~G---------IG~psAai~~eeL~~- 83 (258)
T PRK07115 23 FGPYILLTNFSYYVEVFAELFGVPVSG-----SMFSMAHAT----AEGITIINFG---------MGSPNAATIMDLLSA- 83 (258)
T ss_pred cCCEEEECCChHHHHHHHHHcCCceec-----ccceeeccC----CCEEEEEeCC---------CCHHHHHHHHHHHHH-
Confidence 357899999999999999988776331 222333332 9999999999 999999999987754
Q ss_pred cCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCCChhhh---------hcCcceEEEEe
Q 025413 92 LKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKLS 162 (253)
Q Consensus 92 ~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~~~~l~---------~~~~~~~G~i~ 162 (253)
++++.+|++|+||||+ +++++||+||++.++++|+.. + .|.++..|..++..|. .+.++|.|.++
T Consensus 84 ~g~~~iIr~GtaGaL~-~~l~~GDiVI~t~avr~dgts----~-~Y~p~~~pa~~d~~l~~~l~~~~~~~~~~~~~G~v~ 157 (258)
T PRK07115 84 LNPKAVLFLGKCGGLK-SKYQVGDYFLPIAAIRGEGTS----D-DYFPPEVPALPNFVLQKAVSSIIRDKGLDYWTGTVY 157 (258)
T ss_pred cCCCEEEEEecccCcC-CCCCCCCEEEEEEEEEcCCcc----c-cccCCccCcCCCHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 7999999999999999 799999999999999888542 2 4666777776665442 25789999999
Q ss_pred eccccccC-hH-hHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCC
Q 025413 163 TGDSLDMS-SQ-DETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGD 216 (253)
Q Consensus 163 sgd~~~~~-~~-~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~ 216 (253)
|+|.|+.+ .+ ..+.+++++++++|||+||++++|+.+|+|+.+||+|||.....
T Consensus 158 StD~ff~~~~~~~~~~~~~~g~~avEME~AAl~~va~~~gv~~~~i~~isD~~~~~ 213 (258)
T PRK07115 158 TTNRRFWEHDKEFKEYLYETRAQAIDMETATLFAAGFANNIPTGALLLISDLPLRP 213 (258)
T ss_pred ecCCCccCCcHHHHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEEecccCCC
Confidence 99985533 33 34556678999999999999999999999999999999999543
No 22
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=99.97 E-value=6.1e-29 Score=213.03 Aligned_cols=188 Identities=15% Similarity=0.117 Sum_probs=143.9
Q ss_pred eEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHH-HHHHHHcCCCEEEEEeeecccCCCCCCcccEEEeccceecc
Q 025413 48 WVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVT-YASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHD 126 (253)
Q Consensus 48 ~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~-~~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d 126 (253)
-.+|.|+++|++|+++.+|++.+ -|++++++.+ .+++++++++.||++|+|||++ +++++||+||+++++++|
T Consensus 41 ~~~~~G~~~g~~Vv~~~~gih~~-----~Gk~~~a~~~~~~~l~~~Gv~~II~~GsaGsl~-~~l~~GDiVI~~~~i~~~ 114 (248)
T TIGR01697 41 GELVFGRLGGKPVVCMQGRFHYY-----EGYDMATVTFPVRVMKLLGVEILVVTNAAGGLN-PDFKPGDLMIIKDHINLP 114 (248)
T ss_pred ccEEEEEECCEEEEEEcCCCccc-----CCCCHHHHHHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEEEhhhhhcC
Confidence 36999999999999999882111 1899987776 5589999999999999999999 799999999999999999
Q ss_pred CCCCCCCccccCC-CccCC---CCChhhh---------hcCcceEEE--EeeccccccChHhHHHHHhCCCeEEecchHH
Q 025413 127 RRIPIPVFDLYGV-GQRQA---FSTPNLL---------RELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDMEGAA 191 (253)
Q Consensus 127 ~~~~~~~f~~y~~-~~~p~---~~~~~l~---------~~~~~~~G~--i~sgd~~~~~~~~~~~l~~~~~~~vdME~aa 191 (253)
.+.....+....+ ...|. ..|++|. .+++++.|+ +.|||.|....+ .+.+++++++++|||+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~d~~L~~~l~~~a~~~~~~~~~G~~~~~~G~~f~t~~e-~~~~~~~g~~~VeME~aa 193 (248)
T TIGR01697 115 GLNPLVGPNDDRFGTRFPDLSNAYDRELRKLAQDVAKELGFPLTEGVYVMVSGPSYETPAE-IRMLRILGADAVGMSTVP 193 (248)
T ss_pred CCCCccCCCcccCCceeCCCCcccCHHHHHHHHHHHHHcCCceeeEEEEEEECCCcCCHHH-HHHHHHcCCeEEccChHH
Confidence 7632111110001 11122 1255553 256789998 789999995544 466778899999999999
Q ss_pred HHHHHHhCCCCEEEEEEeecCCCC--CC-ccHHHHHHHHHHHHHHHHHHHHHHh
Q 025413 192 VAYVADLFKVPALFVKAVTDLVDG--DK-PTAEEFMQNLVAVTAALEQSVSQVI 242 (253)
Q Consensus 192 va~~a~~~~ip~~~ir~ISD~~~~--~~-~~~~~~~~~~~~aa~~~~~~l~~~l 242 (253)
++++|+++++|+++||.|||.+++ +. .++++|.+.+++.+..+.+.|.+++
T Consensus 194 ~a~lA~~~gv~~~~i~~Vsd~a~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 247 (248)
T TIGR01697 194 EVIVARHCGIKVLAVSLITNMAAGITDVPLSHEEVLAAAAAAAERFISLLEDII 247 (248)
T ss_pred HHHHHHHCCCcEEEEEEEEecCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999984 33 3788888887776766666666554
No 23
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=99.96 E-value=3.2e-28 Score=207.89 Aligned_cols=215 Identities=16% Similarity=0.117 Sum_probs=157.9
Q ss_pred eEEEEEcchHhHHH-HHHhcCccccCccCCCCCCCeEEEEEEECCeeEEE-EecCCCCCCCcCCcCh------hHHHHHH
Q 025413 14 SVVIIIAMQTEAMP-LVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNI-IWPGKDTSLEVDSVGT------ISASLVT 85 (253)
Q Consensus 14 ~i~Ii~Al~~E~~~-~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l-~~~G~~~~~~~~giG~------~~aa~~~ 85 (253)
+++||..+...--+ +.+..... ..+++.+ -..++|.|+++|++|++ .++| +|+ +|+++.+
T Consensus 1 ~~~ii~gs~~~~~~~~~~~~~~~--~~tp~g~-~~~~~~~G~~~g~~vv~~~~~G---------~g~~~~~~~vn~~a~~ 68 (241)
T TIGR01694 1 MIGVIGGSGLYDLEGLKDVEEVN--VDTPYGN-PSAPIVVGRVAGVDVAFLPRHG---------RGHDIPPHEVNYRANI 68 (241)
T ss_pred CEEEEeccccccccccccceEEE--EECCCCC-CCCCEEEEEECCEEEEEEeCCC---------CCCccChHHCCcHHHH
Confidence 47888777643211 11222111 1222311 13579999999999997 7788 888 8887777
Q ss_pred HHHHHHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCcc--CCCCChhhh---------hcC
Q 025413 86 YASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQR--QAFSTPNLL---------REL 154 (253)
Q Consensus 86 ~~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~--p~~~~~~l~---------~~~ 154 (253)
+.| .+++++.+|++|+|||++ +++++||+||++++++++.+.....|+....+.. +..+|++|. .++
T Consensus 69 ~~L-~~~Gv~~iI~~GsaG~l~-~~l~~GDlVI~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~L~~~l~~~a~~~~~ 146 (241)
T TIGR01694 69 WAL-KSLGVKYVISVNAVGSLR-EEYPPGDLVVPDQFIDRTSGRPSTFFDGGKVVHVDFGDPYCEDLRQRLIESLRRLGL 146 (241)
T ss_pred HHH-HHcCCCEEEEeccccccC-CCCCCCCEEEEhhHhhccCCCCCccCCCCccCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 776 789999999999999999 7999999999999998887532212211001111 112355553 246
Q ss_pred cce-EEEEe--eccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCC--C-CccHHHHHHHHH
Q 025413 155 NLK-VCKLS--TGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDG--D-KPTAEEFMQNLV 228 (253)
Q Consensus 155 ~~~-~G~i~--sgd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~--~-~~~~~~~~~~~~ 228 (253)
+++ .|.++ +|+.|... +..+.++++|+++||||+++++++|+++|+|+++||.|||.++. + ..++++|.+.++
T Consensus 147 ~~~~~G~~~~~~G~~f~t~-~e~~~~~~~Ga~aVeME~aa~~~vA~~~gv~~~~i~~Vsd~a~~~~~~~~~~~e~~~~~~ 225 (241)
T TIGR01694 147 TVHDGGTYVCTEGPRFSTR-AESRMFKSWGADIVGMTGVPEAVLARELELCYATLALVTDYDCWISADHVTAEEVEEVMG 225 (241)
T ss_pred cEEeceEEEeCcCCCcCCH-HHHHHHHHcCCeEEeccHHHHHHHHHHCCCCEEEEEEEeeccccCCCCCCCHHHHHHHHH
Confidence 788 79988 77788754 44567778899999999999999999999999999999998873 2 348999999999
Q ss_pred HHHHHHHHHHHHHhH
Q 025413 229 AVTAALEQSVSQVID 243 (253)
Q Consensus 229 ~aa~~~~~~l~~~l~ 243 (253)
+....+.+.+.++++
T Consensus 226 ~~~~~~~~~~~~~~~ 240 (241)
T TIGR01694 226 ENVEKAKRILLEAIK 240 (241)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999888888764
No 24
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=99.96 E-value=2e-27 Score=203.56 Aligned_cols=183 Identities=16% Similarity=0.107 Sum_probs=137.2
Q ss_pred eEEEEEEECCeeEEEEecCCCCCCCcCCc----ChhHHHHHH-HHHHHHcCCCEEEEEeeecccCCCCCCcccEEEeccc
Q 025413 48 WVRYHGTYKDLHLNIIWPGKDTSLEVDSV----GTISASLVT-YASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDV 122 (253)
Q Consensus 48 ~~~~~g~~~g~~v~l~~~G~~~~~~~~gi----G~~~aa~~~-~~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~ 122 (253)
-.++.|+++|++|+++.+| + |++++++.. .+++++++++.||++|+|||++ +++++||+|++++.
T Consensus 41 ~~~~~G~i~g~~Vv~~~~~---------iH~~~Gk~~a~i~~~~~ll~~~gv~~II~~gsaGsl~-~~l~~GDiVi~~d~ 110 (249)
T TIGR01700 41 GNLVFGILGGKPVVAMQGR---------FHMYEGYDMAKVTFPVRVMKLLGVETLVVTNAAGGIN-PEFKVGDLMLIRDH 110 (249)
T ss_pred ccEEEEEECCEEEEEEcCC---------ccccCCcCHHHccHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEEEhhH
Confidence 4699999999999999988 6 899999984 9999999999999999999999 79999999999999
Q ss_pred eeccCCCCCCCccc----cCCCccCCCCChhhh---------hcCcceEEE--EeeccccccChHhHHHHHhCCCeEEec
Q 025413 123 AFHDRRIPIPVFDL----YGVGQRQAFSTPNLL---------RELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDM 187 (253)
Q Consensus 123 ~~~d~~~~~~~f~~----y~~~~~p~~~~~~l~---------~~~~~~~G~--i~sgd~~~~~~~~~~~l~~~~~~~vdM 187 (253)
+++|...+..+++. ......+...|++|. .+++++.|+ ++|||.|....+. +.++++|+++|||
T Consensus 111 i~~~~~~~l~g~~~~~~~~~~~~~~~~~d~~L~~~~~~~a~~~~~~~~~G~y~~~sGp~F~t~aE~-~~~~~~gad~V~M 189 (249)
T TIGR01700 111 INLPGFNPLRGPNEERFGVRFPDMSDAYDRDLRQKAHSIAKQLNIPLQEGVYVMLGGPSYETPAEV-RLLRTLGADAVGM 189 (249)
T ss_pred hhCCCCCCccCCCCcCCCCeeCCCCcccCHHHHHHHHHHHHHcCCccceEEEEEeeCCCcCCHHHH-HHHHHcCCCEEec
Confidence 99996332111111 111111111255553 256788998 8999999965544 5666789999999
Q ss_pred chHHHHHHHHhCCCCEEEEEEeecCCCC--CC-ccHHHHH-HHHHHHHHHHHHHHHHH
Q 025413 188 EGAAVAYVADLFKVPALFVKAVTDLVDG--DK-PTAEEFM-QNLVAVTAALEQSVSQV 241 (253)
Q Consensus 188 E~aava~~a~~~~ip~~~ir~ISD~~~~--~~-~~~~~~~-~~~~~aa~~~~~~l~~~ 241 (253)
|+++++++|+++|+|+++||.|||++++ +. .++.++. +.+++++..+.+.|.++
T Consensus 190 e~aaea~~A~~~gv~~~~i~~vsd~a~~~~~~~~~~~~~v~~~~~~~~~~~~~ll~~~ 247 (249)
T TIGR01700 190 STVPEVIVARHCGLRVFGFSLITNKAAGILDYELSVHEEVMEAAKQAAEKLEKFVSLL 247 (249)
T ss_pred chHHHHHHHHHcCCcEEEEEEEeecccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999985 22 3533443 34444444444444433
No 25
>TIGR01719 euk_UDPppase uridine phosphorylase. This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.
Probab=99.96 E-value=2.2e-27 Score=206.84 Aligned_cols=187 Identities=17% Similarity=0.133 Sum_probs=143.7
Q ss_pred eEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEE---EEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHH
Q 025413 14 SVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYH---GTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQ 90 (253)
Q Consensus 14 ~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~---g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~ 90 (253)
++.|++..|..++.+.+.|...+.... ..+...+..|+ |+|+|.+|+++.|| ||+++|++++++|++
T Consensus 32 ~~vi~~GDP~Ra~~iA~~l~~~~~~~~-~~~~r~~~~~t~r~g~ykg~~V~v~stG---------IG~psaaI~~~ELi~ 101 (287)
T TIGR01719 32 KFVCMGGTPSRMKAFARYVGAELGLSC-GRDYPNISERGDRFAMYKVGPVLCVSHG---------MGIPSISIMLHELIK 101 (287)
T ss_pred CEEEeCCCHHHHHHHHHHHhhhhcccc-cccceeeeeeccccEEEccEEEEEEecC---------CCcchHHHHHHHHHH
Confidence 789999999999999998877543221 01233445555 89999999999999 999999999999998
Q ss_pred H---c--CCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCc---cCCCCChhhh-----------
Q 025413 91 A---L--KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQ---RQAFSTPNLL----------- 151 (253)
Q Consensus 91 ~---~--~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~---~p~~~~~~l~----------- 151 (253)
. + +++.||++|+|||+ ++++||+||++.++++|.+.. +..+..+. .|..+|++|.
T Consensus 102 ~~~~~~~~~~~IIRiGtaG~l---~i~iGDvVIat~a~~~d~~~~---~~~~~~~~~~~~~~~aD~~L~~~l~~aa~~~~ 175 (287)
T TIGR01719 102 LLYYARCKNPTFIRIGTSGGI---GVPPGTVVVSSEAVDACLKPE---YEQIVLGKRVIRPTQLDEALVQELLLCGAEGL 175 (287)
T ss_pred hhhhcCCCCceEEEEeccccC---CCCCCCEEEEchhhhcccCch---HhhcccCCCcccCCCCCHHHHHHHHHHHHhhc
Confidence 5 3 55699999999999 399999999999998886421 22222221 1333455542
Q ss_pred hcCcceEEEEeeccccccC-------------hHhHHHHH---hCCCeEEecchHHHHHHHHhCCCCEEEEE-EeecCCC
Q 025413 152 RELNLKVCKLSTGDSLDMS-------------SQDETSIT---ANDATIKDMEGAAVAYVADLFKVPALFVK-AVTDLVD 214 (253)
Q Consensus 152 ~~~~~~~G~i~sgd~~~~~-------------~~~~~~l~---~~~~~~vdME~aava~~a~~~~ip~~~ir-~ISD~~~ 214 (253)
.+.++|.|.++|+|.|+.+ .+..+.++ +++++++|||+||++++|+.+|+|+++|+ .++|..+
T Consensus 176 ~~~~~~~G~i~S~D~Fy~~q~r~~~~~~~~~~~~~~~~i~~~~~~gv~~vEMEsaal~~va~~~gv~a~~I~~~i~~r~~ 255 (287)
T TIGR01719 176 DEFTTVSGNTMCTDDFYEGQGRLDGAFCEYTEKDKMAYLRKLYALGVRNIEMESSMFAAMTSRAGFKAAVVCVTLLNRLE 255 (287)
T ss_pred CCCCeEEEEEccCCcccCCCCcccccccccchhhhHHHHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEeeecccc
Confidence 2467999999999999996 22233333 45999999999999999999999999999 7789876
Q ss_pred CC
Q 025413 215 GD 216 (253)
Q Consensus 215 ~~ 216 (253)
++
T Consensus 256 ~~ 257 (287)
T TIGR01719 256 GD 257 (287)
T ss_pred CC
Confidence 65
No 26
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=99.96 E-value=6e-27 Score=202.96 Aligned_cols=224 Identities=17% Similarity=0.147 Sum_probs=166.7
Q ss_pred cCeEEEEEcchHhHHHHHHhcCccccCc----cCCCC----CCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHH
Q 025413 12 ISSVVIIIAMQTEAMPLVNKFELKEDQD----SVFPE----GVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASL 83 (253)
Q Consensus 12 ~~~i~Ii~Al~~E~~~~~~~l~~~~~~~----~~~~~----~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~ 83 (253)
.++|+||+....- .+.+.+....... +-||. +-.-+++.|+++|++|+++.+|.+.+ -|++++++
T Consensus 21 ~~~i~iI~GsGl~--~~~~~~~~~~~~~y~~ip~f~~~~v~gh~~~~~~G~l~g~~Vv~~~g~~H~y-----eG~~~~~~ 93 (272)
T PRK08202 21 KPEIGLILGSGLG--ALADEIENAVVIPYADIPGFPVSTVEGHAGELVLGRLGGKPVLAMQGRFHYY-----EGYSMEAV 93 (272)
T ss_pred CCCEEEEeCCchh--HHHHHhcCcEEEecccCCCCCCCCCcCCCceEEEEEECCEEEEEEccCCccc-----CCCCHHHH
Confidence 3589999998643 2222232221111 11211 11347999999999999999882221 29999988
Q ss_pred HHH-HHHHHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCC-ccCCC---CChhhh-------
Q 025413 84 VTY-ASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVG-QRQAF---STPNLL------- 151 (253)
Q Consensus 84 ~~~-~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~-~~p~~---~~~~l~------- 151 (253)
.+. +++++++++.||++|+||||+ +++++||+||+++.++++...+..+++....+ ..+.+ .|++|.
T Consensus 94 ~a~i~~l~~lGv~~II~tgaaGsL~-~~l~~GDiVi~~d~i~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~L~~~l~~~a 172 (272)
T PRK08202 94 TFPVRVMKALGVETLIVTNAAGGLN-PDFGPGDLMLISDHINLTGRNPLIGPNDDEFGPRFPDMSDAYDPELRALAKKVA 172 (272)
T ss_pred HHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEEEchhhhhCCCCcccCCCcccCCCccCCCCcccCHHHHHHHHHHH
Confidence 776 599999999999999999999 79999999999999999876432122110111 11111 245543
Q ss_pred --hcCcceEEEE--eeccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCC--C-ccHHHHH
Q 025413 152 --RELNLKVCKL--STGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGD--K-PTAEEFM 224 (253)
Q Consensus 152 --~~~~~~~G~i--~sgd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~--~-~~~~~~~ 224 (253)
.+++++.|++ ++||+|....+. +.++++|+++||||+++++++|+++|+||++||.|||++++. . .+++++.
T Consensus 173 ~~~~~~~~~G~y~~~~Gp~feT~aE~-~~~~~~Gad~VgMe~~~ea~lA~~~gi~~~~i~~Vsd~a~~~~~~~~~~~ev~ 251 (272)
T PRK08202 173 KELGIPLQEGVYVGVSGPSYETPAEI-RMLRTLGADAVGMSTVPEVIVARHCGLKVLGISCITNLAAGISDEPLSHEEVL 251 (272)
T ss_pred HHcCCceeeEEEEEeeCCCcCCHHHH-HHHHHcCCcEEecChHHHHHHHHHCCCcEEEEEEEeccCcCCCCCCCCHHHHH
Confidence 2567899987 999999987774 567778999999999999999999999999999999999763 2 3899999
Q ss_pred HHHHHHHHHHHHHHHHHhHh
Q 025413 225 QNLVAVTAALEQSVSQVIDF 244 (253)
Q Consensus 225 ~~~~~aa~~~~~~l~~~l~~ 244 (253)
+.+++++..+.+.+.++++.
T Consensus 252 ~~~~~~~~~~~~l~~~~i~~ 271 (272)
T PRK08202 252 EVAERAAPKFGRLVKAILAR 271 (272)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999888765
No 27
>TIGR01721 AMN-like AMP nucleosidase, putative. The sequences in the clade represented by this model are most closely related to the AMP nucleosidase found in TIGR01717. These sequences are found only in Chlamydia and Porphyromonas and differ sufficiently from the characterized AMP nucleosidase to put some doubt on assignment of this name.
Probab=99.96 E-value=7.6e-27 Score=199.96 Aligned_cols=180 Identities=13% Similarity=0.066 Sum_probs=142.3
Q ss_pred CeEEEEEcchHhHHHHHHhcCcccc-CccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHH
Q 025413 13 SSVVIIIAMQTEAMPLVNKFELKED-QDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (253)
Q Consensus 13 ~~i~Ii~Al~~E~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~ 91 (253)
......+-....++.+.+.++.... .. +.--.+. .|.++.++.+| ||+++|+..++.|+..
T Consensus 23 ~~~~~~tn~~~~i~~f~~~~~~~v~~g~--------~~~~~~~-~~~~itv~~~G---------vG~psAai~~eeL~~~ 84 (266)
T TIGR01721 23 EPYLLLTNFSYYLHVFAEHYGVPVVEGS--------MFSAAHA-PAEGTSIIDFK---------LGSPGAALIXDLCSFL 84 (266)
T ss_pred cceeeeccHHHHHHHHHHHcCCeEeece--------eccccCC-CCCCEEEEECC---------CCHHHHHHHHHHHHHh
Confidence 4567777888888888887765443 11 0000011 17899999999 9999999999988777
Q ss_pred cCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCCChhhh---------hcCcceEEEEe
Q 025413 92 LKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKLS 162 (253)
Q Consensus 92 ~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~~~~l~---------~~~~~~~G~i~ 162 (253)
++|+.+|++|+||||+ +++++||+||++.+++.|+.. ..|..+..|..+++++. .+.+++.|+++
T Consensus 85 ~G~k~iIriGtcG~L~-~~i~iGDiVI~~aAir~dgts-----~~Y~p~~~p~~~d~~l~~~l~~a~~~~g~~~~~G~v~ 158 (266)
T TIGR01721 85 PHPKAAIMLGMCGGLR-SHYQVGDYFVPVASIRGEGTS-----DAYFPPEVPALANFVVQKAITSALENKGKDYHIGITH 158 (266)
T ss_pred cCCCEEEEEEeccCCC-CCCCCCCEEEEcceEeccCch-----hhcCCcccCCCCCHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8999999999999999 699999999999999888653 24666777776665543 25789999999
Q ss_pred eccc-cccChH-hHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCC
Q 025413 163 TGDS-LDMSSQ-DETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGD 216 (253)
Q Consensus 163 sgd~-~~~~~~-~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~ 216 (253)
|+|. |+...+ ..+.+++.++++||||+|+++++|+.+++|+.+|+.|||.+...
T Consensus 159 TtD~~F~e~~~~~~~~~~~~ga~aVEMEsAAL~ava~~~~vp~~~il~VSD~~~~~ 214 (266)
T TIGR01721 159 TTNIRFWEFNKKFRDKLYETKAQGVEMECATLFTAGYRRNLPXGALLLISDLPLRP 214 (266)
T ss_pred cCCCcEeCCcHHHHHHHHHcCCEEEehhHHHHHHHHHHcCCCeEEEEEECCCCCCC
Confidence 9997 554333 34556778999999999999999999999999999999998553
No 28
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=99.95 E-value=6.1e-27 Score=193.18 Aligned_cols=184 Identities=17% Similarity=0.207 Sum_probs=158.5
Q ss_pred eEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcC
Q 025413 14 SVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALK 93 (253)
Q Consensus 14 ~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~ 93 (253)
+..|+...|...+.+.+.|++.+... +.+.++.|+|+|+|++|+++.|| ||.+++|++.++|. +.+
T Consensus 18 ~~vilpGdP~R~~~iA~lld~~~~va----~~Ref~~~~g~~~g~~v~v~StG---------IGgPSaaIAvEEL~-~lG 83 (248)
T COG2820 18 TLVILPGDPERVEKIAKLLDNPVLVA----SNREFRTYTGTYNGKPVTVCSTG---------IGGPSAAIAVEELA-RLG 83 (248)
T ss_pred ceEEecCCHHHHHHHHHHhccchhhh----hccceEEEEEEEcCeEEEEEecC---------CCCchHHHHHHHHH-hcC
Confidence 68999999999999999999988764 56789999999999999999999 99999999999985 589
Q ss_pred CCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCCChhhh---------hcCcceEEEEeec
Q 025413 94 PDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKLSTG 164 (253)
Q Consensus 94 ~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~~~~l~---------~~~~~~~G~i~sg 164 (253)
.+.+|.+|++||++ +++++||+||++..+..|+.. ..|.....|..++.++. .+.++|.|.+.|+
T Consensus 84 a~tfiRVGT~Galq-~~i~~Gdvvi~tgAvr~dG~s-----~~y~~~~~PAv~d~~~t~al~~aa~~~~~~~~vG~v~S~ 157 (248)
T COG2820 84 AKTFIRVGTTGALQ-PDINVGDVVVATGAVRLDGAS-----KHYAPEEFPAVADFELTNALVEAAESLGVTVHVGVVASS 157 (248)
T ss_pred CeEEEEeecccccc-CCCCCCCEEEecccccccccc-----ccccCCCCCCCCCHHHHHHHHHHHHhcCCceEEEEEeec
Confidence 99999999999999 799999999999999999843 24655556666665543 2578999999999
Q ss_pred cccc-----------cC-hHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEE-eecCCCCCC
Q 025413 165 DSLD-----------MS-SQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKA-VTDLVDGDK 217 (253)
Q Consensus 165 d~~~-----------~~-~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~-ISD~~~~~~ 217 (253)
|.|+ .+ ++..+.|+..|..++|||+|+++.+|+.+|++..++.+ |+|..+.+.
T Consensus 158 D~FYgQ~r~~~~~~~~e~~~~~~~W~~~gv~~~EMEsAtlftl~~~~G~rag~V~~vi~n~~~~e~ 223 (248)
T COG2820 158 DAFYGQERYYSGFVTPEFKESWEEWQDLGVLNIEMESATLFTLGSLRGLRAGAVLGVIANRTQGEQ 223 (248)
T ss_pred ccccccccccccccCcchHHHHHHHHHcCchhhHHHHHHHHHHHHHcCcccccEEEEEcccccccc
Confidence 9999 33 34567777789999999999999999999999777766 999887654
No 29
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=99.95 E-value=4e-27 Score=197.39 Aligned_cols=176 Identities=20% Similarity=0.250 Sum_probs=135.7
Q ss_pred eEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcC
Q 025413 14 SVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALK 93 (253)
Q Consensus 14 ~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~ 93 (253)
+++++++++.|+... .+++|+++.+| +|+++|+.+++.|+ +++
T Consensus 3 ~~~~~~~~~~e~~~~---------------------------~~~~v~~~~sG---------iG~~~aa~~~~~l~-~~~ 45 (212)
T TIGR03468 3 PILAVTGLAFEARIA---------------------------AGPGLLVCLSG---------GGPERARAAAARLM-AAG 45 (212)
T ss_pred cEEEEecchhhhhhc---------------------------CCCCEEEEEcC---------CCHHHHHHHHHHHH-HcC
Confidence 488999999987721 12357889999 99999999999985 799
Q ss_pred CCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCCChhh--------hhcCcceEEEEeecc
Q 025413 94 PDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNL--------LRELNLKVCKLSTGD 165 (253)
Q Consensus 94 ~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~~~~l--------~~~~~~~~G~i~sgd 165 (253)
|+.||++|+|||++ +++++||+|+++++.+++. . | .+ ++.| ..+++++.|.++|+|
T Consensus 46 ~~~vI~~G~aG~l~-~~l~~Gdvvi~~~~~~~g~--~---~-~~---------d~~l~~~l~~~l~~~~~~~~G~~~t~d 109 (212)
T TIGR03468 46 AAGLVSFGTAGALD-PALQPGDLVVPEEVRADGD--R---F-PT---------DPAWRRRLLEALPAGLRVHRGVLAASD 109 (212)
T ss_pred CCEEEEEEecccCC-CCCCCCCEEeehhheeCCC--e---e-cC---------CHHHHHHHHHHHHhCCCeEEEEEEEeC
Confidence 99999999999999 7999999999998865421 1 2 01 1221 134578999999999
Q ss_pred ccccChHhHHHHH-hCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCCccHHHHHHHH-HHHHHHHHHHHHHHhH
Q 025413 166 SLDMSSQDETSIT-ANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNL-VAVTAALEQSVSQVID 243 (253)
Q Consensus 166 ~~~~~~~~~~~l~-~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~-~~aa~~~~~~l~~~l~ 243 (253)
.|+.+++.+..+. .++++++|||+++++++|+.+|+||++||+|||.++++.+ .+|.... .....+....+..+++
T Consensus 110 ~~~~~~~~~~~l~~~~ga~aVdMEsaava~va~~~gip~~~ir~ISD~a~~~~~--~~~~~~~~~~g~~~~~~ll~~l~~ 187 (212)
T TIGR03468 110 TVVSTAAAKAALARATGAAAVDMESGAVAAVAAAAGLPFAVIRVISDPADRALP--RAALDALRPDGSTALAALLRGLLR 187 (212)
T ss_pred eEecCHHHHHHHHHhcCCcEEeChHHHHHHHHHHcCCCEEEEEEEeecCCCcCc--hhHHHhcCcccCccHHHHHHHHHh
Confidence 9999888777775 5799999999999999999999999999999999988754 3343333 2233344444444444
Q ss_pred h
Q 025413 244 F 244 (253)
Q Consensus 244 ~ 244 (253)
.
T Consensus 188 ~ 188 (212)
T TIGR03468 188 R 188 (212)
T ss_pred C
Confidence 3
No 30
>PRK08292 AMP nucleosidase; Provisional
Probab=99.95 E-value=9.4e-27 Score=211.44 Aligned_cols=156 Identities=20% Similarity=0.192 Sum_probs=123.0
Q ss_pred CCeEEEEEE-ECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecccee
Q 025413 46 VPWVRYHGT-YKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 124 (253)
Q Consensus 46 ~~~~~~~g~-~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~ 124 (253)
..+++|.+. .+|++|+++.+| ||++||+++++.| ..++|+.+|++|+|||++ +++++||+||++.+++
T Consensus 263 ~~mp~y~l~~~~G~~VtvvssG---------IGpsnAA~ateeL-a~lgpd~iIriGtAGgL~-~~lkiGDvVIA~aavr 331 (489)
T PRK08292 263 PQMPAYHLIRADGQGITLVNIG---------VGPSNAKTITDHL-AVLRPHAWLMIGHCGGLR-NSQRIGDYVLAHAYLR 331 (489)
T ss_pred cCCcceEeeccCCceEEEEEcC---------CCHHHHHHHHHHH-HHcCCCEEEEEEehhcCC-CCCCCCCEEEECceEe
Confidence 455667654 667999999999 9999999888765 668999999999999999 7999999999999999
Q ss_pred ccCCCCCCCccccCCCccCCCCChh----hh---h----------cCcceEEEEeeccccccCh---HhHHHHHhCCCeE
Q 025413 125 HDRRIPIPVFDLYGVGQRQAFSTPN----LL---R----------ELNLKVCKLSTGDSLDMSS---QDETSITANDATI 184 (253)
Q Consensus 125 ~d~~~~~~~f~~y~~~~~p~~~~~~----l~---~----------~~~~~~G~i~sgd~~~~~~---~~~~~l~~~~~~~ 184 (253)
+|.... .|..+..|..++.+ |. + +.++|.|.++|+|.|+... +..+.+++.++++
T Consensus 332 ~DGt~d-----~~~p~evPa~a~~el~~aL~~aa~ev~~~~g~elg~~~h~G~V~SgD~F~~e~~~~~l~~~~~~~gAlA 406 (489)
T PRK08292 332 DDHVLD-----AVLPPWIPIPAIAEVQVALEDAVAEVTGLPGEELKRRMRTGTVVTTDDRNWELRYSASALRFNQSRAVA 406 (489)
T ss_pred CCcccc-----cccccccCcCCcHHHHHHHHHHHHHHhhhcccccCCceEEEEEEecCcCCCcCchHHHHHHhhhcCCEE
Confidence 996422 23233344322221 11 0 4579999999999997643 2234455569999
Q ss_pred EecchHHHHHHHHhCCCCEEEEEEeecCCCCCC
Q 025413 185 KDMEGAAVAYVADLFKVPALFVKAVTDLVDGDK 217 (253)
Q Consensus 185 vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~ 217 (253)
+|||+|+|+++|+.+++|+++||+|||..+..+
T Consensus 407 VEMESAALa~va~~~gVP~gaIr~VSD~~~~~E 439 (489)
T PRK08292 407 LDMESATIAANGYRFRVPYGTLLCVSDKPLHGE 439 (489)
T ss_pred EehhHHHHHHHHHHhCCCEEEEEEEEecCCCCC
Confidence 999999999999999999999999999997653
No 31
>TIGR01717 AMP-nucleosdse AMP nucleosidase. This model represents the AMP nucleosidase from proteobacteria but also including a sequence from Corynebacterium, a gram-positive organism. The species from E. coli has been most well studied.
Probab=99.95 E-value=2.6e-26 Score=207.99 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=122.9
Q ss_pred CCeEEEE-EEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecccee
Q 025413 46 VPWVRYH-GTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 124 (253)
Q Consensus 46 ~~~~~~~-g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~ 124 (253)
..+++|. +..+|.+|+++.+| ||++||+.+++. |..++|+.+|++|+||||+ +++++||+||++.+++
T Consensus 251 ~~mp~Y~l~~~~g~~ItvvstG---------IGpsnAaaitee-La~lgp~~iI~iGscGgL~-~~ikiGDlVIataAvR 319 (477)
T TIGR01717 251 HQMPAYHLITADGDGITLVNIG---------VGPSNAKTITDH-LAVLRPHAWLMIGHCGGLR-ESQRIGDYVLAHAYLR 319 (477)
T ss_pred CCCceEEEEeeCCceEEEEECC---------CCHHHHHHHHHH-HHHcCCCEEEEEEccccCC-CCCCCCCEEEEeeEEe
Confidence 3456666 66788999999999 999999988776 4669999999999999999 7999999999999999
Q ss_pred ccCCCCCCCccccCCCccCCCCChhh----h---h----------cCcceEEEEeecccccc---ChHhHHHHHhCCCeE
Q 025413 125 HDRRIPIPVFDLYGVGQRQAFSTPNL----L---R----------ELNLKVCKLSTGDSLDM---SSQDETSITANDATI 184 (253)
Q Consensus 125 ~d~~~~~~~f~~y~~~~~p~~~~~~l----~---~----------~~~~~~G~i~sgd~~~~---~~~~~~~l~~~~~~~ 184 (253)
+|.... .|.....|.-++..+ . + +.++|.|+++|+|.|+. +++..+.++..++++
T Consensus 320 ~DGtsd-----~ylp~~~Papa~~~l~~aL~~Aa~~~~g~~g~el~~~~h~G~V~StD~F~~el~~~~~~~~l~~~gAlA 394 (477)
T TIGR01717 320 EDHVLD-----AVLPPDIPIPAIAEVQRALEDAVAEVTGRPGEELKRRLRTGTVLTTDDRNWELRYSASALRLNLSRAIA 394 (477)
T ss_pred cCcchh-----hhcccccCCCCcHHHHHHHHHHHHHhhcccccccCCceEEEEEEecCcCcccCCCHHHHHHHHhCCCEE
Confidence 996422 122222332222221 1 1 23689999999999863 445555566669999
Q ss_pred EecchHHHHHHHHhCCCCEEEEEEeecCCCCCC
Q 025413 185 KDMEGAAVAYVADLFKVPALFVKAVTDLVDGDK 217 (253)
Q Consensus 185 vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~ 217 (253)
+|||+|+++++|..+++|+.+||+|||.....+
T Consensus 395 VEMESAALaava~~~gVP~gaLr~VSD~~l~~E 427 (477)
T TIGR01717 395 VDMESATIAAQGYRFRVPYGTLLCVSDKPLHGE 427 (477)
T ss_pred EehhHHHHHHHHHHhCCCEEEEEEEEEcCCCCC
Confidence 999999999999999999999999999987653
No 32
>PRK07077 hypothetical protein; Provisional
Probab=99.95 E-value=3.6e-26 Score=193.19 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=120.7
Q ss_pred ccccCeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHH
Q 025413 9 QEAISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYAS 88 (253)
Q Consensus 9 ~~~~~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~l 88 (253)
++..++|+|+++++.|.+ +... ..+-++..| .|+..++...+ +
T Consensus 6 ~~~~~~vl~vt~~~~ea~-i~~g--------------------------~~~~~~~~g---------~~~~~~~a~~~-~ 48 (238)
T PRK07077 6 GRDPRPVLAVTGMAFEAR-IAAG--------------------------PGVEVVCAA---------RADRLERALLA-A 48 (238)
T ss_pred CCCCccEEEEEecHHHHH-HhcC--------------------------CCceEEecC---------CCHHHHHHHHH-H
Confidence 345567999999999998 3221 112344446 67777766555 6
Q ss_pred HHHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCCChhh-------hh----cCcce
Q 025413 89 IQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNL-------LR----ELNLK 157 (253)
Q Consensus 89 i~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~~~~l-------~~----~~~~~ 157 (253)
+...+|+.||++|+||||+ +++++||+||++++.+++.. |.. ++.| +. ..+++
T Consensus 49 ~~~~~~~~vIs~G~AGgL~-p~l~vGDvVva~~v~~~~g~--------~~~-------d~~l~~~l~~~l~~~~~~~~v~ 112 (238)
T PRK07077 49 FDARGCAGIVSFGVAGGLD-PDLAPGDLVVATAVDAPFGR--------VDT-------DARWSARLAAALELTPVARRVV 112 (238)
T ss_pred HHhcCCCEEEEEEeccccC-CCCCCCcEEEEeeeecCCCc--------CcC-------CHHHHHHHHHHHHhccCCCceE
Confidence 6678999999999999999 79999999999998765431 110 1111 11 34789
Q ss_pred EEEEeeccccccChHhHHHHH-hCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCC
Q 025413 158 VCKLSTGDSLDMSSQDETSIT-ANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVD 214 (253)
Q Consensus 158 ~G~i~sgd~~~~~~~~~~~l~-~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~ 214 (253)
.|.++|+|.|+.+.+.++.++ ++++++||||+++++++|+++++||++||+|||.++
T Consensus 113 ~G~i~T~D~~v~~~~~k~~L~~~~gA~aVDMEsaAvA~va~~~giPf~viR~ISD~a~ 170 (238)
T PRK07077 113 RGGLAGVEAPVVGAAAKAALHRATGALAVDMESHIAAAFAAARGLPFAACRVIVDPAW 170 (238)
T ss_pred EEEEEecCeeecCHHHHHHHHHhCCCEEEehhHHHHHHHHHHcCCCEEEEEEEEeccC
Confidence 999999999999998888887 479999999999999999999999999999999998
No 33
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.94 E-value=3.5e-25 Score=180.29 Aligned_cols=206 Identities=20% Similarity=0.230 Sum_probs=160.6
Q ss_pred ccCeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHH
Q 025413 11 AISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQ 90 (253)
Q Consensus 11 ~~~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~ 90 (253)
.+.+..++...|..++-+.+.|-...... .+.++..-|+|+|+|++|.+.-+| ||.++..+-..+|+.
T Consensus 12 dia~~VLmPGDPlRAK~iAetfLe~~~~v---nevR~mlgfTGtYKGk~iSvmg~G---------mGipS~sIY~~ELi~ 79 (236)
T COG0813 12 DIAEVVLMPGDPLRAKYIAETFLENAVCV---NEVRGMLGFTGTYKGKKISVMGHG---------MGIPSISIYSRELIT 79 (236)
T ss_pred ccCceeecCCCCchHHHHHHHHHhhhhhh---hhhcchhcccceecCcEEEEEEec---------CCCccHHHHHHHHHH
Confidence 34578889999999988888755443321 245778899999999999999999 899999999999999
Q ss_pred HcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCCChhhh---------hcCcceEEEE
Q 025413 91 ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKL 161 (253)
Q Consensus 91 ~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~~~~l~---------~~~~~~~G~i 161 (253)
.|+++.+|.+|+||+++ ++++++||||+..+. .|.....-.|.++.+ +..+|.+|+ .++++|.|.+
T Consensus 80 ~y~Vk~iIRvGt~Gal~-~~v~l~DvVia~~A~-tds~~~~~~f~~~df---~~~ad~~Ll~~a~~~A~e~gi~~hvgnv 154 (236)
T COG0813 80 DYGVKKIIRVGTCGALS-EDVKLRDVVIAQGAS-TDSNVNRIRFKPHDF---APIADFELLEKAYETAKELGIDTHVGNV 154 (236)
T ss_pred HhCcceEEEEEcccccc-CCcccceEEEecccc-CcchhhhcccCcccc---cccCCHHHHHHHHHHHHHhCCceeeeee
Confidence 99999999999999999 799999999998875 232211011222222 223466664 3689999999
Q ss_pred eeccccccC-hHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCC-CCCccHHHHHHHHHHHHHH
Q 025413 162 STGDSLDMS-SQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVD-GDKPTAEEFMQNLVAVTAA 233 (253)
Q Consensus 162 ~sgd~~~~~-~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~-~~~~~~~~~~~~~~~aa~~ 233 (253)
.|+|.|+.+ ++..+.++++|+++||||++|++.+|.++|...+.|..|||..- ++..+.++=+..+..-...
T Consensus 155 ~ssD~FY~~~~~~~~~~~~~gvlaVeMEaaalY~~A~~~~~~Al~ilTVSD~l~t~E~~s~eeRq~tF~~M~~i 228 (236)
T COG0813 155 FSSDLFYNPDTEMFDLMAKYGVLAVEMEAAALYAVAAEYGKKALTILTVSDHLVTGEETSAEERQNTFNDMIEI 228 (236)
T ss_pred eeeecccCCCHHHHHHHHHhCCcEEEeeHHHHHHHHHHhCcceEEEEEeeccccCcccCCHHHHHHHHHHHHHH
Confidence 999999976 44566778899999999999999999999999999999999994 3444555555554444433
No 34
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=99.93 E-value=3.1e-24 Score=182.75 Aligned_cols=214 Identities=13% Similarity=0.144 Sum_probs=159.3
Q ss_pred EEEEEcchHhHHHHHHhcCccccCc----cCCC----CCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHH
Q 025413 15 VVIIIAMQTEAMPLVNKFELKEDQD----SVFP----EGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTY 86 (253)
Q Consensus 15 i~Ii~Al~~E~~~~~~~l~~~~~~~----~~~~----~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~ 86 (253)
++||+.... ..+.+.+....... +-|| .+-.-.++.|+++|++|++ .+| .|+++++..++
T Consensus 2 ~~ii~Gsgl--~~~~~~~~~~~~i~y~~ip~~p~~~v~gh~g~l~~G~l~g~~Vv~-~~G---------r~h~y~g~~~~ 69 (248)
T TIGR01699 2 VAFILGSGL--GALADQIENAVAISYEKLPGFPVSTVHGHAGELVLGHLQGVPVVC-MKG---------RGHFYEGRGMT 69 (248)
T ss_pred EEEEeeCcH--HHHHHhccCCEEEECCCCCCCCCCcccCCcceEEEEEECCEEEEE-EeC---------CCcccCCcchh
Confidence 677776652 34555554443211 1111 0112469999999999999 678 88887777666
Q ss_pred HHH------HHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCC-----ccCCCCChhhh----
Q 025413 87 ASI------QALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVG-----QRQAFSTPNLL---- 151 (253)
Q Consensus 87 ~li------~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~-----~~p~~~~~~l~---- 151 (253)
.+. ++++++.||++|.|||++ +++++||+|++++.+++....+..+++.-.++ ..+.| |++|.
T Consensus 70 ~~~~~i~~l~~lGv~~iI~t~aaG~l~-~~l~~Gdlvi~~d~i~~t~~~p~~~~~~~~~g~~~~~~~~~y-d~~Lr~~~~ 147 (248)
T TIGR01699 70 IMTDAIRTFKLLGCELLFCTNAAGSLR-PEVGAGSLVALKDHINTMPGTPMVGLNDDRFGERFFSLANAY-DAEYRALLQ 147 (248)
T ss_pred hhcchHHHHHHcCCCEEEEecceeccC-CCCCCCCEECHHHHhhcCCCCCccCCCcccCCCCCCCCCCcc-CHHHHHHHH
Confidence 666 889999999999999999 79999999999999988554332111111111 11111 34442
Q ss_pred -----hcCcceEEEEee--ccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCC---ccHH
Q 025413 152 -----RELNLKVCKLST--GDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDK---PTAE 221 (253)
Q Consensus 152 -----~~~~~~~G~i~s--gd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~---~~~~ 221 (253)
.+++++.|++++ |++|.+..|. +.++++|+++|+||+++.+++|+++|+|+++|+.|||++++.. .+.+
T Consensus 148 ~~a~~~~~~~~~Gvy~~~~GP~FeT~AE~-r~~~~~Gad~VgMs~vpEa~~A~~~g~~~~~i~~Vtn~a~g~~~~~lt~~ 226 (248)
T TIGR01699 148 KVAKEEGFPLTEGVFVSYPGPNFETAAEI-RMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITNMAEGLSDVKLSHA 226 (248)
T ss_pred HHHHHcCCceeeEEEEEeeCCCcCCHHHH-HHHHHcCCcEEccchhHHHHHHHHCCCcEEEEEEEeecCcCcCCCCCCHH
Confidence 256789999999 9999977665 6677889999999999999999999999999999999997643 3789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 025413 222 EFMQNLVAVTAALEQSVSQVID 243 (253)
Q Consensus 222 ~~~~~~~~aa~~~~~~l~~~l~ 243 (253)
+..+.++++...+.+.|..+++
T Consensus 227 ev~~~~~~~~~~~~~ll~~~~~ 248 (248)
T TIGR01699 227 QTLAAAELSKQNFINLICGFLR 248 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999888763
No 35
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=99.92 E-value=3.3e-23 Score=176.51 Aligned_cols=220 Identities=12% Similarity=0.131 Sum_probs=157.4
Q ss_pred eEEEEEcchHhHHHHHHhcCccc-cCccCCCCCCCeEEEEEEECCeeEE-EEecCCCCCCCcCCcChhHHHHHHHHHHHH
Q 025413 14 SVVIIIAMQTEAMPLVNKFELKE-DQDSVFPEGVPWVRYHGTYKDLHLN-IIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (253)
Q Consensus 14 ~i~Ii~Al~~E~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~g~~v~-l~~~G~~~~~~~~giG~~~aa~~~~~li~~ 91 (253)
+|+||+.+...- +.......+ ...+++.. -+.+++.|+++|++|+ +.++|..+ ..+ +.++|..+... ++++
T Consensus 1 ~igiI~Gsgl~~--~~~~~~~~~~~~~tpyg~-~~~~l~~G~l~g~~Vv~l~RhG~~h--~~~-~~~V~~~A~i~-al~~ 73 (245)
T PRK09136 1 MLAIIGGTGLTQ--LAGLDIVQRQVVRTPYGA-PSGPLTFGTLAGREVVFLARHGHGH--TIP-PHKVNYRANIW-ALKQ 73 (245)
T ss_pred CEEEEeccccch--hhhccccceeEEEcCCCC-CcccEEEEEECCEEEEEEecCCCCC--CCC-hHHcCcHHHHH-HHHH
Confidence 388898886432 111111111 12223321 2468999999999998 55677211 112 33887533333 3688
Q ss_pred cCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCC----CC-Chhhh---------hcCcce
Q 025413 92 LKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQA----FS-TPNLL---------RELNLK 157 (253)
Q Consensus 92 ~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~----~~-~~~l~---------~~~~~~ 157 (253)
++++.+|++|.|||++ +++++||+||+++.++++.+.+...|+ +.....+. ++ |++|. .+++++
T Consensus 74 lGv~~ii~t~aaG~l~-~~l~~Gdlvi~~d~i~~~~~~p~t~~~-~~~~~~~~~~~~~~~d~~L~~~~~~~a~~~~~~~~ 151 (245)
T PRK09136 74 AGATRVLAVNTVGGIH-ADMGPGTLVVPDQIIDYTWGRKSTFFE-GDGEEVTHIDFTHPYSPMLRQRLLAAARAAGVSLV 151 (245)
T ss_pred cCCCEEEEecccccCC-CCCCCCCEEEEHHHhhccCCCCCCCCC-CCCCCCCCCCCcccCCHHHHHHHHHHHHHcCCcEE
Confidence 9999999999999999 799999999999999988865433333 22111221 11 45543 246666
Q ss_pred -EEEEe--eccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCC---C-ccHHHHHHHHHHH
Q 025413 158 -VCKLS--TGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGD---K-PTAEEFMQNLVAV 230 (253)
Q Consensus 158 -~G~i~--sgd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~---~-~~~~~~~~~~~~a 230 (253)
.|+++ +|++| .++.+.+.+++.|+++|+||+++.+.+|+++|+|+++|+.|||++.+. . .+.+++.+.++++
T Consensus 152 ~~Gvy~~~~GP~f-eT~AE~r~lr~~Gad~VgMs~~pEa~~A~~~gi~~~~i~~Vtn~a~g~~~~~~~~~~ev~~~~~~~ 230 (245)
T PRK09136 152 DGGVYAATQGPRL-ETAAEIARLERDGCDLVGMTGMPEAALARELGLPYACLALVANWAAGRGDSAEITMAEIEAALDAA 230 (245)
T ss_pred eccEEEEeeCCCc-CCHHHHHHHHHcCCCEEcCcHHHHHHHHHHcCCCEEEEEEEeecccCcCCCCCCCHHHHHHHHHHH
Confidence 58877 99999 777888888889999999999999999999999999999999999653 2 4789999999999
Q ss_pred HHHHHHHHHHHhH
Q 025413 231 TAALEQSVSQVID 243 (253)
Q Consensus 231 a~~~~~~l~~~l~ 243 (253)
+..+.+.+.+++.
T Consensus 231 ~~~~~~l~~~~i~ 243 (245)
T PRK09136 231 MGRVRELLERLVR 243 (245)
T ss_pred HHHHHHHHHHHhc
Confidence 9999988887753
No 36
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=99.71 E-value=4.6e-15 Score=128.77 Aligned_cols=227 Identities=13% Similarity=0.076 Sum_probs=160.3
Q ss_pred ccCeEEEEEcchHh-HHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEe-cCCCCCCCcCCcChhHHHHHHHHH
Q 025413 11 AISSVVIIIAMQTE-AMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIW-PGKDTSLEVDSVGTISASLVTYAS 88 (253)
Q Consensus 11 ~~~~i~Ii~Al~~E-~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~-~G~~~~~~~~giG~~~aa~~~~~l 88 (253)
..++|+||..+..- +..+.+..... ..+++.. ..-.+..|+++|++|+++. +|..+.+ + +..++..+.. ++
T Consensus 2 ~~p~igIIgGSGl~~~~~l~~~~~~~--~~tpyg~-psg~l~~G~l~G~~V~~l~RhGr~H~y--~-p~~i~~rAni-~a 74 (289)
T PRK08931 2 TKAVLGIIGGSGVYDIDGLEDARWER--VESPWGE-PSDALLFGRLGGVPMVFLPRHGRGHRL--S-PSDINYRANI-DA 74 (289)
T ss_pred CCceEEEEecCCcCCccccccceeee--eEcCCCC-CcCcEEEEEECCEEEEEEeCCCCCCcc--C-hHHcccHHHH-HH
Confidence 34589999988743 22222222221 1222311 1236888999999998885 7743332 3 5666665555 45
Q ss_pred HHHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCcccc---CCCccCCCCChhhh-------h--cCcc
Q 025413 89 IQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLY---GVGQRQAFSTPNLL-------R--ELNL 156 (253)
Q Consensus 89 i~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y---~~~~~p~~~~~~l~-------~--~~~~ 156 (253)
++.++++.+|.++.|||++ +++++||+++.++.+++......+.|+.. .++..+.| +++|. + ++++
T Consensus 75 lk~lGv~~ii~tnA~Gsln-~~~~pGd~vi~~D~In~t~~~~~~~~g~~~~~f~~m~~~y-~~~Lr~~l~~~a~~~~~~~ 152 (289)
T PRK08931 75 LKRAGVTDIVSLSACGSFR-EELPPGTFVIVDQFIDRTFAREKSFFGTGCVAHVSMAHPV-CPRLGDRLAAAARAEGITV 152 (289)
T ss_pred HHHcCCCEEEEecccccCC-CCCCCCCEEeehhhhccCCCCCCCccCCCcccCCCCCccc-CHHHHHHHHHHHHHcCCeE
Confidence 6889999999999999999 79999999999999977544332233221 01111112 34442 1 4566
Q ss_pred eE-E--EEeeccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCC----CccHHHHHHHHHH
Q 025413 157 KV-C--KLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGD----KPTAEEFMQNLVA 229 (253)
Q Consensus 157 ~~-G--~i~sgd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~----~~~~~~~~~~~~~ 229 (253)
+. | ....|++|- ++.+.+.++..|+++|.|-+...+.+|++.|++++.|-.|+|++... ..+.++..+.+++
T Consensus 153 ~~~GvYv~~~GPrfE-T~AEir~~r~~GaDvVGMStvPEvilAre~Gl~~a~is~VTN~a~g~~~~~~~t~eeV~~~~~~ 231 (289)
T PRK08931 153 HRGGTYLCMEGPQFS-TLAESKLYRSWGCDVIGMTNMPEAKLAREAEICYATVAMVTDYDCWHPDHDAVTVDAVIAVLLA 231 (289)
T ss_pred ecceEEEEeeCCCCC-CHHHHHHHHHcCCCEeccCccHHHHHHHHcCCceEEEEEEecccccccCCCCCCHHHHHHHHHH
Confidence 64 4 466777775 45567778889999999999999999999999999999999998432 2488999999999
Q ss_pred HHHHHHHHHHHHhHhhcc
Q 025413 230 VTAALEQSVSQVIDFING 247 (253)
Q Consensus 230 aa~~~~~~l~~~l~~~~~ 247 (253)
++..+.+.|.++++.+..
T Consensus 232 ~~~~~~~ll~~~i~~l~~ 249 (289)
T PRK08931 232 NADKARALVARLAPDLGA 249 (289)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999999854
No 37
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=99.70 E-value=6.9e-15 Score=126.89 Aligned_cols=226 Identities=15% Similarity=0.114 Sum_probs=159.3
Q ss_pred cCeEEEEEcchH-hHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEE-ecCCCCCCCcCCcChhHHHHHHHHHH
Q 025413 12 ISSVVIIIAMQT-EAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNII-WPGKDTSLEVDSVGTISASLVTYASI 89 (253)
Q Consensus 12 ~~~i~Ii~Al~~-E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~-~~G~~~~~~~~giG~~~aa~~~~~li 89 (253)
.++|+||..+.. ++..+.+...... .+++.. ..-.+..|++.|++|+++ +.|..+ ..+ ...+|..+.. +.+
T Consensus 7 ~~~igiIgGSGl~~~~~l~~~~~~~~--~tpyg~-p~~~l~~g~l~g~~v~~l~RhGr~H--~y~-~~~i~~~a~i-~aL 79 (267)
T PRK08564 7 KASIGIIGGSGLYDPGIFENSKEVKV--YTPYGE-PSDNIIIGEIEGVEVAFLPRHGRGH--RIP-PHKINYRANI-WAL 79 (267)
T ss_pred CceEEEEecCCCCCCcccccceeeeE--EcCCCC-CccCEEEEEECCEEEEEEeCCCCCc--ccC-CccCcchHHH-HHH
Confidence 347999999875 2223333332221 222311 123577799999999887 466322 234 3555654444 456
Q ss_pred HHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCC---CccCCCCChhhh---------hcCcce
Q 025413 90 QALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGV---GQRQAFSTPNLL---------RELNLK 157 (253)
Q Consensus 90 ~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~---~~~p~~~~~~l~---------~~~~~~ 157 (253)
+.++++.+|.+|.|||++ +++++||+|++++.++.+...+...+..-.+ +..+.| |++|. .+++++
T Consensus 80 k~LGvk~iI~tnavGsl~-~~~~pGDlVv~~D~I~~tg~~p~t~~~g~~~~~~~~~~~y-~~~Lr~~l~~aA~~~g~~~~ 157 (267)
T PRK08564 80 KELGVEWVIAVSAVGSLR-EDYKPGDFVIPDQFIDMTKKREYTFYDGPVVAHVSMADPF-CPELRKIIIETAKELGIRTH 157 (267)
T ss_pred HHCCCcEEEEeccccccC-CCCCCCCEEeehhhhccCCCCCcccCCCCccccCCCCccc-CHHHHHHHHHHHHHcCCcee
Confidence 889999999999999999 7999999999999998776543211210001 111111 33442 246777
Q ss_pred -EEE--EeeccccccChHhHHHHHhC-CCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCC--ccHHHHHHHHHHHH
Q 025413 158 -VCK--LSTGDSLDMSSQDETSITAN-DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDK--PTAEEFMQNLVAVT 231 (253)
Q Consensus 158 -~G~--i~sgd~~~~~~~~~~~l~~~-~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~--~~~~~~~~~~~~aa 231 (253)
.|+ ...|++|- ++.+.+.++.. |+++|.|-....+.+|++.|++++.|-.|+|++.+.. .+.++..+.+++++
T Consensus 158 ~~GvY~~~~GP~fE-T~AEir~~r~~~GaD~VGMS~vpEvilAre~g~~~~~is~VtN~a~g~~~~~t~~ev~~~~~~~~ 236 (267)
T PRK08564 158 EKGTYICIEGPRFS-TRAESRMWREVFKADIIGMTLVPEVNLACELGMCYATIAMVTDYDVWAEKPVTAEEVTRVMAENT 236 (267)
T ss_pred cceEEEEeeCCCcC-CHHHHHHHHHccCCCEeccCccHHHHHHHHcCCceEEEEEEeccccCCCCCCCHHHHHHHHHHHH
Confidence 475 55667665 45567888886 9999999999999999999999999999999996543 37899999999999
Q ss_pred HHHHHHHHHHhHhhcc
Q 025413 232 AALEQSVSQVIDFING 247 (253)
Q Consensus 232 ~~~~~~l~~~l~~~~~ 247 (253)
..+.+.+.++++.+..
T Consensus 237 ~~~~~ll~~~i~~l~~ 252 (267)
T PRK08564 237 EKAKKLLYEAIPRIPE 252 (267)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999998853
No 38
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=99.69 E-value=1.5e-14 Score=125.47 Aligned_cols=227 Identities=16% Similarity=0.129 Sum_probs=159.7
Q ss_pred cccCeEEEEEcchHhHHHHHHhcCccccC--ccCCCCCCCeEEEEEEECCeeEEEE-ecCCCCCCCcCCcChhHHHHHHH
Q 025413 10 EAISSVVIIIAMQTEAMPLVNKFELKEDQ--DSVFPEGVPWVRYHGTYKDLHLNII-WPGKDTSLEVDSVGTISASLVTY 86 (253)
Q Consensus 10 ~~~~~i~Ii~Al~~E~~~~~~~l~~~~~~--~~~~~~~~~~~~~~g~~~g~~v~l~-~~G~~~~~~~~giG~~~aa~~~~ 86 (253)
|+.++|+||+.+..---+. |...+.. .+++.. ..-.+..|+++|++|+++ +.|..+.+ + +-.++..+..
T Consensus 1 ~~~~~igIIgGSGl~~l~~---l~~~~~~~~~tp~G~-ps~~l~~G~l~g~~v~~l~RhGr~H~y--~-p~~i~~rAni- 72 (290)
T PRK07432 1 MTQAKIGIIGGSGLYKMEA---LKDVEEVQLETPFGS-PSDALIVGTLDGTRVAFLARHGRNHTL--L-PTELPFRANI- 72 (290)
T ss_pred CCCCcEEEEecCccCChhh---cCcceEEEeeCCCCC-CCCCEEEEEECCEEEEEEECCCCCCcc--C-hhhcCcHHHH-
Confidence 3456899999987432112 2222221 222211 123577899999998776 56643333 3 5555555444
Q ss_pred HHHHHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccC---CCCChhhh-------h--cC
Q 025413 87 ASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQ---AFSTPNLL-------R--EL 154 (253)
Q Consensus 87 ~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p---~~~~~~l~-------~--~~ 154 (253)
++++.++++.+|.+..+||++ +++++||+|+.++.+++........|+....++.+ .| +++|. + ++
T Consensus 73 ~alk~lGv~~ii~tna~Gsln-~~~~pGdlvv~~D~Id~t~~rp~t~~~~~~~~~~~~~~~y-~~~Lr~~l~~~a~~~~~ 150 (290)
T PRK07432 73 YAMKQLGVEYLISASAVGSLK-EEAKPLDMVVPDQFIDRTKNRISTFFGEGIVAHIGFGDPI-CPALAGVLADAIASLNL 150 (290)
T ss_pred HHHHHcCCCEEEEEecccccc-CCCCCCCEEeecceecCCCCCCCcccCCCcccCCcCCCCc-CHHHHHHHHHHHHHcCC
Confidence 456789999999999999999 79999999999999987654332223221111111 11 34442 1 22
Q ss_pred ---cce-EEE--EeeccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCC----CCccHHHHH
Q 025413 155 ---NLK-VCK--LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDG----DKPTAEEFM 224 (253)
Q Consensus 155 ---~~~-~G~--i~sgd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~----~~~~~~~~~ 224 (253)
++| .|+ ...|++|- ++.+.+.++..|+++|.|-+...+.+|++.|++++.|-.|+|++.+ ...+.++..
T Consensus 151 ~~~~~~~~GvYv~~~GPrfE-T~AEir~~r~~GaDvVGMS~vPEvilAre~Gl~~a~ls~VTN~a~g~~~~~~~s~eeV~ 229 (290)
T PRK07432 151 PDVTLHRGGTYVCMEGPAFS-TKAESNLYRSWGATVIGMTNLPEAKLAREAEIAYATLALVTDYDCWHPDHDSVTVEMVI 229 (290)
T ss_pred CccceeCCeEEEEeeCCCCC-cHHHHHHHHHcCCCEeccCchHHHHHHHhCCCcEEEEEEEeecccccCcCCCCCHHHHH
Confidence 566 575 55666765 4556777888999999999999999999999999999999999953 224889999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcc
Q 025413 225 QNLVAVTAALEQSVSQVIDFING 247 (253)
Q Consensus 225 ~~~~~aa~~~~~~l~~~l~~~~~ 247 (253)
+.+++++..+.+.|.++++.+..
T Consensus 230 ~~~~~~~~~~~~ll~~~i~~l~~ 252 (290)
T PRK07432 230 GNLHKNAVNAQKVIQETVRRLSA 252 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999865
No 39
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=99.67 E-value=6.8e-14 Score=118.30 Aligned_cols=186 Identities=19% Similarity=0.173 Sum_probs=141.1
Q ss_pred EEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCC
Q 025413 49 VRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRR 128 (253)
Q Consensus 49 ~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~ 128 (253)
++..|+++|++|+++. |. .|..+ ...++...+--++++.++++.+|.++.+||++ +++++||+++.++.+++...
T Consensus 42 ~l~~G~l~g~~V~~l~-Gr--~H~ye-g~~~~~v~~~i~al~~lGv~~ii~tna~Gsl~-~~~~pGdlv~~~D~I~~t~~ 116 (237)
T TIGR01698 42 ELIRVRIGDGPVLVLG-GR--THAYE-GGDARAVVHPVRTARATGAETLILTNAAGGLR-QDWGPGTPVLISDHINLTAR 116 (237)
T ss_pred eEEEEEECCEEEEEEc-CC--CcccC-CCcHHHhHHHHHHHHHcCCCEEEEEcccccCC-CCCCCCCEEeechhcccCCC
Confidence 6888999999999888 62 23344 35566534455677889999999999999999 79999999999999987665
Q ss_pred CCCCCccccCCCccCCCCChhhh-----hcCcceEEE--EeeccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCC
Q 025413 129 IPIPVFDLYGVGQRQAFSTPNLL-----RELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKV 201 (253)
Q Consensus 129 ~~~~~f~~y~~~~~p~~~~~~l~-----~~~~~~~G~--i~sgd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~i 201 (253)
.+. +...-+.....| |++|. .+++++.|+ ...|++|- ++.+.+.+++.|+++|-|-+...+.+|++.|+
T Consensus 117 ~pl--~g~~~~d~~~~y-d~~Lr~~a~~~~~~~~~GvY~~~~GP~fE-T~AEir~~r~~GaD~VGMS~vpEvilAre~g~ 192 (237)
T TIGR01698 117 SPL--IGPRFVDLTDAY-SPRLRELAERVDPPLAEGVYAWFPGPHYE-TPAEIRMAGILGADLVGMSTVPETIAARFCGL 192 (237)
T ss_pred CCC--CCCccCCCCccc-CHHHHHHHHHcCCCccCEEEEEecCCCcC-CHHHHHHHHHcCCCEeccCchHHHHHHHHCCC
Confidence 431 110001111111 34443 245677885 66677765 45567888889999999999999999999999
Q ss_pred CEEEEEEeecCCCCC---CccHHHHHHHHHHHHHHHHHHHHHHhH
Q 025413 202 PALFVKAVTDLVDGD---KPTAEEFMQNLVAVTAALEQSVSQVID 243 (253)
Q Consensus 202 p~~~ir~ISD~~~~~---~~~~~~~~~~~~~aa~~~~~~l~~~l~ 243 (253)
+++.|-.|+|++.+. ..+.++..+.+++++..+.+.+.++++
T Consensus 193 ~~a~is~VtN~a~g~~~~~~th~ev~~~~~~~~~~~~~ll~~~i~ 237 (237)
T TIGR01698 193 EVLGVSLVTNLAAGITGTPLSHAEVKAAGAAAGTRLAALLADIIK 237 (237)
T ss_pred cEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999553 237899999999999999998888763
No 40
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=99.60 E-value=6.5e-13 Score=114.16 Aligned_cols=224 Identities=14% Similarity=0.121 Sum_probs=155.8
Q ss_pred ccCeEEEEEcchHhHHHHHH-hcCccccCccCCCCCCCeEEEEEEECCeeEEEE-ecCCCCCCCcCCcChhHHHHHHHHH
Q 025413 11 AISSVVIIIAMQTEAMPLVN-KFELKEDQDSVFPEGVPWVRYHGTYKDLHLNII-WPGKDTSLEVDSVGTISASLVTYAS 88 (253)
Q Consensus 11 ~~~~i~Ii~Al~~E~~~~~~-~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~-~~G~~~~~~~~giG~~~aa~~~~~l 88 (253)
+.++|+||+.+...- +.+ .... ....+++.. ..-.+..|+++|++|+++ +.|..+. .+ ...++..+.. ++
T Consensus 4 ~~p~igII~GSGl~~--l~~~~~~~-~~~~tpyg~-~sg~l~~G~l~g~~v~~l~RhGr~H~--ye-~~~i~~rani-~a 75 (264)
T PRK07823 4 NGAMLGVIGGSGFYS--FFGSDARE-VNVDTPYGP-PSAPITIGEVGGRRVAFLPRHGRDHE--FS-PHTVPYRANM-WA 75 (264)
T ss_pred CCceEEEEeccccch--hhccccee-eEEeccCCC-CCCCEEEEEECCEEEEEEeCCCCCCC--cC-CCCccchHHH-HH
Confidence 456899999987532 322 1111 112223321 123578899999998877 5663222 23 2234544433 45
Q ss_pred HHHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCc-cCCCC---Chhhhh-----cCcceEE
Q 025413 89 IQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQ-RQAFS---TPNLLR-----ELNLKVC 159 (253)
Q Consensus 89 i~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~-~p~~~---~~~l~~-----~~~~~~G 159 (253)
++.++++.+|.+..+||++ +++++||+++.+++++...+.+...| ..|. .+.+. +++|.+ ...++.|
T Consensus 76 lk~lGv~~ii~tnA~Gsln-~~~~pGdlvi~dd~id~t~~~p~t~~---~~g~~f~~m~~~y~~~Lr~~l~~~a~~~~~G 151 (264)
T PRK07823 76 LRALGVRRVFAPCAVGSLR-PELGPGTVVVPDQLVDRTSGRAQTYF---DSGGVHVSFADPYCPTLRAAALGLPGVVDGG 151 (264)
T ss_pred HHHcCCCEEEEecccccCC-CCCCCCCEEEcchhhhccCCCCCCcc---CCCccCCCCCcccCHHHHHHHHHHHhhcCCe
Confidence 6889999999999999999 79999999999999866544332122 2221 11111 344431 0146677
Q ss_pred E--EeeccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCC----CccHHHHHHHHHHHHHH
Q 025413 160 K--LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGD----KPTAEEFMQNLVAVTAA 233 (253)
Q Consensus 160 ~--i~sgd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~----~~~~~~~~~~~~~aa~~ 233 (253)
+ ...|++|- ++.+.+.++..|+++|.|-+...+.+|++.|++++.|-.|+|++.+. ..+.++..+.+++++..
T Consensus 152 vY~~~~GP~fE-T~AEir~~r~~GaDvVGMS~vPEvilAre~gl~~~~is~VTN~a~g~~~~~~~~~eev~~~~~~~~~~ 230 (264)
T PRK07823 152 TMVVVQGPRFS-TRAESRWFAAQGWSLVNMTGYPEAVLARELELCYAAIALVTDLDAGVEAGEGVKAVDVFAEFGRNIER 230 (264)
T ss_pred EEEEeeCCCCC-CHHHHHHHHHcCCCEeccCccHHHHHHHHCCCceEEEEEEeccccCcccCCCCCHHHHHHHHHHHHHH
Confidence 5 56677765 45567888889999999999999999999999999999999998543 23789999999999999
Q ss_pred HHHHHHHHhHhhcc
Q 025413 234 LEQSVSQVIDFING 247 (253)
Q Consensus 234 ~~~~l~~~l~~~~~ 247 (253)
+.+.+..+|+.+..
T Consensus 231 ~~~ll~~~i~~~~~ 244 (264)
T PRK07823 231 LKRLVRDAIAAVPA 244 (264)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999988754
No 41
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.58 E-value=5.4e-13 Score=113.31 Aligned_cols=222 Identities=13% Similarity=0.106 Sum_probs=159.8
Q ss_pred ccCeEEEEEcch-HhHHHHHHhcCccccCccCCCCCCCeEEEEEEEC--Cee-EEEEecCCCCCCCcCCcChhHHHHHHH
Q 025413 11 AISSVVIIIAMQ-TEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYK--DLH-LNIIWPGKDTSLEVDSVGTISASLVTY 86 (253)
Q Consensus 11 ~~~~i~Ii~Al~-~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~--g~~-v~l~~~G~~~~~~~~giG~~~aa~~~~ 86 (253)
.+++|+||..+. .++....+ ........++|+ ........|++. |.+ .++.+.| ..+..| ..+.+..+. -
T Consensus 15 ~~~~igiIgGSGl~~l~~~~~-~~~~~~~~tpfg-~~s~~~~~g~~~~~g~~v~~l~rhG--r~H~y~-ph~~~~ran-i 88 (262)
T COG0005 15 EMPMIGIIGGSGLYDLADLLE-VREPYSDITPFG-VPSVPGHAGELVTLGGKVAFLARHG--RGHSYP-PHSVNYRAN-I 88 (262)
T ss_pred CCccEEEEecccccccccccc-cceecccCCCCC-CCCCceEEEEEeecCceEEEEecCC--CCCCCC-CCCchHHHH-H
Confidence 467899999886 33333222 111111123332 124566788876 666 6777888 334455 577777776 5
Q ss_pred HHHHHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCccCCCC------Chhhh-------h-
Q 025413 87 ASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFS------TPNLL-------R- 152 (253)
Q Consensus 87 ~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~p~~~------~~~l~-------~- 152 (253)
+.++..+++.||.+..+|||+ +++++||++++++.+++.. ...|-|+ .+..+.|+ |++|. +
T Consensus 89 ~alk~lGV~~vi~tnAvGsl~-~~~~pGd~vv~~d~Id~t~-r~~~~~~---~~~~~~~~d~s~~y~~~lr~~l~~~a~~ 163 (262)
T COG0005 89 RALKALGVERVILTNAVGSLR-EEYKPGDLVVPDDHIDFTK-RQNPFYG---GNDGVRFVDMSDPYDPELREALAEAAKE 163 (262)
T ss_pred HHHHHcCCeEEEEeccccccc-ccCCCCCEEeehhheeccC-CCCcccC---CCCceeeCCCCCcCCHHHHHHHHHHHhh
Confidence 677889999999999999999 7999999999999999985 2222222 22112221 34442 1
Q ss_pred ---cCcceEEE--EeeccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCC--ccHHHHHH
Q 025413 153 ---ELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDK--PTAEEFMQ 225 (253)
Q Consensus 153 ---~~~~~~G~--i~sgd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~--~~~~~~~~ 225 (253)
....+.|+ ..+|++|. ++.+.+.++..|+++|.|-+..-+.+|++.+++++.|-.|+|++-+.. .+.++-.+
T Consensus 164 ~~~~~~~~~GvYv~~eGP~fe-T~AEirm~r~~GaDvVGMS~vPEv~lARe~~l~ya~is~vTn~aag~~~~lt~eEV~~ 242 (262)
T COG0005 164 LRLGHPLQEGVYVCVEGPRFE-TPAEIRMFRSLGADVVGMSTVPEVILARELGLCVAALSLVTNYAAGIGQPLTHEEVLE 242 (262)
T ss_pred cccCcccCceEEEEecCCCcC-CHHHHHHHHHhCCCcccCcCCcHHHHhHhhCCcEEEEEEeehhhccCCCCcCHHHHHH
Confidence 23444574 66777776 455677888889999999999999999999999999999999995532 38899999
Q ss_pred HHHHHHHHHHHHHHHHhHh
Q 025413 226 NLVAVTAALEQSVSQVIDF 244 (253)
Q Consensus 226 ~~~~aa~~~~~~l~~~l~~ 244 (253)
.+.+++..+.+.+.++++.
T Consensus 243 ~~~~~~~~~~~l~~~~i~~ 261 (262)
T COG0005 243 VAKENAEKIAKLLAAAIAK 261 (262)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998875
No 42
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism]
Probab=99.37 E-value=5.9e-11 Score=97.45 Aligned_cols=225 Identities=16% Similarity=0.143 Sum_probs=150.0
Q ss_pred CeEEEEEcchHhHHHHHHh-cCccccCccCCCCCCCeEEEEEEECCeeEEEE-ecCCCCCCCcCCcChhHHHHHHHHHHH
Q 025413 13 SSVVIIIAMQTEAMPLVNK-FELKEDQDSVFPEGVPWVRYHGTYKDLHLNII-WPGKDTSLEVDSVGTISASLVTYASIQ 90 (253)
Q Consensus 13 ~~i~Ii~Al~~E~~~~~~~-l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~-~~G~~~~~~~~giG~~~aa~~~~~li~ 90 (253)
-+|+||.....+--.+++. ...... +++. ...-....|+++|..++++ ++|. .+-.+ ++++|..+....| +
T Consensus 10 VklGIIGGsGl~dp~ile~~ve~~v~--TP~G-~pSd~v~~g~i~gv~cvllARHGr--~H~im-Pt~Vn~rANiwAL-k 82 (283)
T KOG3985|consen 10 VKLGIIGGSGLYDPDILEDPVELVVP--TPWG-KPSDPVIIGQISGVHCVLLARHGR--KHDIM-PTKVNFRANIWAL-K 82 (283)
T ss_pred EEEEEeccCCCCCchhhhcchhhcCC--CCCC-CcCCceeeeecCCeEEEEEecccc--CCccC-CCcCchhHhHHHH-H
Confidence 3799999987665555542 221111 2221 1234677889999887654 7872 33345 7999998887654 7
Q ss_pred HcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccc-c----CCCccCCCC--Chhhh-------hc---
Q 025413 91 ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDL-Y----GVGQRQAFS--TPNLL-------RE--- 153 (253)
Q Consensus 91 ~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~-y----~~~~~p~~~--~~~l~-------~~--- 153 (253)
..+++.||.+-.||+|+ +++++||+|+++++++...++....|+. | ...++|.++ ++++. ++
T Consensus 83 ~~gc~~ii~~tAcGSLr-e~I~Pgd~v~p~q~IDrTt~R~~tffdg~~~~a~gVcHv~~~~pf~~k~reil~~~a~~l~~ 161 (283)
T KOG3985|consen 83 SLGCTAIISFTACGSLR-EEIKPGDFVLPDQIIDRTTGRPSTFFDGSYDQAGGVCHVPFGPPFSQKLREILISTAKELTN 161 (283)
T ss_pred hCCCcEEEEeecccccc-ccCCCccEecchhhhhhhccCccccccCcccCCCceEeccCCCCcCHHHHHHHHHHHHHhcC
Confidence 79999999999999999 7999999999999987666543222332 1 112233222 23321 11
Q ss_pred CcceEE--EEeeccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCC---CCCC-ccHHHHHHHH
Q 025413 154 LNLKVC--KLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLV---DGDK-PTAEEFMQNL 227 (253)
Q Consensus 154 ~~~~~G--~i~sgd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~---~~~~-~~~~~~~~~~ 227 (253)
.....| .+.-|++|....| -..+|..|+.+++|-.-..+..|++.++|+..|...+||- ++++ .+.+.....+
T Consensus 162 ~~hd~~tvVciEGPrFStRAE-S~mfR~wGa~vINMt~iPE~~LAkEagi~Y~~iamaTDYDcWr~~ee~Vtve~Vm~~~ 240 (283)
T KOG3985|consen 162 PHHDDGTVVCIEGPRFSTRAE-SKMFRSWGASVINMTVIPEAKLAKEAGIPYQMIAMATDYDCWRMEEEPVTVETVMKTL 240 (283)
T ss_pred CcCCceeEEEeeCCccchHHH-HHHHHHhccceeeeeechHHHHHHhcCcchhhheeccchhhhhccCCCccHHHHHHHH
Confidence 122234 4566777765443 3456678999999999999999999999999999999996 3233 3667666666
Q ss_pred HHHHHHHHHHHHHHhHhhc
Q 025413 228 VAVTAALEQSVSQVIDFIN 246 (253)
Q Consensus 228 ~~aa~~~~~~l~~~l~~~~ 246 (253)
+.+....-..+++.+..|.
T Consensus 241 ~~N~~kak~ll~~av~~i~ 259 (283)
T KOG3985|consen 241 ANNVRKAKILLLEAVGSIA 259 (283)
T ss_pred HhhhHHHHHHHHHHHHHhc
Confidence 6666666666666666554
No 43
>KOG3984 consensus Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.06 E-value=4.4e-08 Score=81.29 Aligned_cols=225 Identities=17% Similarity=0.136 Sum_probs=149.6
Q ss_pred ccCeEEEEEcchHhHHHHHHhcCccccC----ccCCC----CCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHH
Q 025413 11 AISSVVIIIAMQTEAMPLVNKFELKEDQ----DSVFP----EGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISAS 82 (253)
Q Consensus 11 ~~~~i~Ii~Al~~E~~~~~~~l~~~~~~----~~~~~----~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa 82 (253)
..++++|||....- .+.+.+...... .+-|| .+-.-+++.|+++|+++++.+..++. ..|.-..+.+
T Consensus 23 ~rpk~gIICGSgLg--~l~~~l~~p~i~pYedIP~Fp~s~vpghag~lvfG~l~G~pvv~mqgrfh~---yegy~L~~~t 97 (286)
T KOG3984|consen 23 IRPKVGIICGSGLG--GLADKLSQPVIVPYEDIPNFPVSTVPGHAGRLVFGTLGGAPVVAMQGRFHS---YEGYPLAKCT 97 (286)
T ss_pred cCCceEEEecCCcc--hhhhhccCCEEecHhhCCCCCcccCCCCcccEEEEecCCceEEEEcccccc---cCCccHHHhh
Confidence 45689999987622 333333332211 01111 12223588999999999988866433 3333333333
Q ss_pred HHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEeccceeccCCC---CCCCccccCCCccCCCC------Chhhh--
Q 025413 83 LVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRI---PIPVFDLYGVGQRQAFS------TPNLL-- 151 (253)
Q Consensus 83 ~~~~~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~---~~~~f~~y~~~~~p~~~------~~~l~-- 151 (253)
. --++++..+++.++.+--|||++ +.+++||+.+..+-++.-+-. +..+-+.-++| +.|+ |.+|.
T Consensus 98 f-pvrVm~l~Gv~~lvvTnaAggin-~~f~vgdiMli~DHin~~G~agq~pl~Gpnd~rfG--~rf~a~sdAYd~~lr~~ 173 (286)
T KOG3984|consen 98 F-PVRVMQLLGVRILVVTNAAGGIN-PKFAVGDIMLIKDHINLPGLAGQNPLRGPNDPRFG--VRFPALSDAYDKDLRQK 173 (286)
T ss_pred h-hHHHHHHcCceEEEEeccccCcC-cccccccEEEEecccCCccccCCCCCCCCCccccc--ccccchhhhhhHHHHHH
Confidence 3 45677888999999999999999 799999999987765432211 10000111111 1222 12332
Q ss_pred -----h----cCcceEEE--EeeccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEEEEeecCCCCCC---
Q 025413 152 -----R----ELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDK--- 217 (253)
Q Consensus 152 -----~----~~~~~~G~--i~sgd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~--- 217 (253)
+ .-.+|+|+ +.+|+.|-+ ..+.+.|+..|+++|-|-+.-.-.+|+..|++++++-.|+|.+..+.
T Consensus 174 a~~~~K~m~iqr~lheGvy~~vgGP~~eT-~AE~rmlr~mg~dAVGMStvpEVivArHcG~kVlafslITn~~~~d~s~s 252 (286)
T KOG3984|consen 174 ALEIGKAMGIQRTLHEGVYACVGGPIFET-RAESRMLRTMGADAVGMSTVPEVIVARHCGLKVLAFSLITNKAVVDESAS 252 (286)
T ss_pred HHHHHHHhcccchhhcceEEEecCCcccc-HHHHHHHHHhCcccccccccchheeeccCCcEEEEEEEEeccccccCchh
Confidence 1 34788995 667777654 34456677789999999999999999999999999999999884321
Q ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 025413 218 ----PTAEEFMQNLVAVTAALEQSVSQVIDFI 245 (253)
Q Consensus 218 ----~~~~~~~~~~~~aa~~~~~~l~~~l~~~ 245 (253)
.+.++..+..+.+++.+.+.+..++..|
T Consensus 253 a~~ev~h~evl~v~~~a~~~~~~lVs~lm~~i 284 (286)
T KOG3984|consen 253 ADVEVDHDEVLEVGKQAAQACSDLVSRLMYEI 284 (286)
T ss_pred ccccCCHHHHHhhhHHHHHHHHHHHHHHHhhc
Confidence 2578888999999999999998888765
No 44
>KOG3728 consensus Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=99.06 E-value=4.1e-09 Score=87.21 Aligned_cols=189 Identities=18% Similarity=0.114 Sum_probs=124.3
Q ss_pred eEEEEEcchHhHHHHHHhcCccccCccCC--CCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHH
Q 025413 14 SVVIIIAMQTEAMPLVNKFELKEDQDSVF--PEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (253)
Q Consensus 14 ~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~--~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~ 91 (253)
++.-...+|..++.+...+...-....+- +..-........|+--+|..+.+| ||.++-++.+.++++.
T Consensus 53 kfVC~GGtp~Rmk~~a~~~~~el~~~~~~~~~di~a~sdRyamYKvGPVl~vsHG---------mGtpS~SImlhEliKL 123 (308)
T KOG3728|consen 53 KFVCMGGTPSRMKQFALYLRDELGVSCSGDPVDICARSDRYAMYKVGPVLCVSHG---------MGTPSFSIMLHELIKL 123 (308)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhCCCCCCCCcchhcccceeEEEeecceEEEecC---------CCCccHHHHHHHHHHH
Confidence 45556678888888777765432221110 011122222334566689999999 8999999999999985
Q ss_pred c-----CCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCCCCCccccCCCcc---CCCCChhhh-----------h
Q 025413 92 L-----KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQR---QAFSTPNLL-----------R 152 (253)
Q Consensus 92 ~-----~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~~~~f~~y~~~~~---p~~~~~~l~-----------~ 152 (253)
. +--.+|.+|+|||+. +++|.||+++.+++...+.+ |+.--.|+. |.--+.+|. .
T Consensus 124 l~~Arckdp~~iRiGT~GGiG---v~pGTvV~s~~A~n~~l~~e---~eqiilGkrv~Rpaqld~~l~~eL~~~~~e~~d 197 (308)
T KOG3728|consen 124 LYYARCKDPVFIRIGTCGGIG---VPPGTVVASKNAFNGLLRNE---HEQIILGKRVVRPAQLDKKLIRELLAFGVEAND 197 (308)
T ss_pred HHHccCCCceEEEEeccCccC---CCCccEEEehhhhhhhhhhh---HHhhhccceeechhhhhHHHHHHHHHhCCccCC
Confidence 4 345789999999997 89999999999986555432 222223332 211122221 1
Q ss_pred cCcceEEEEeeccccccCh-------------HhHHHHH---hCCCeEEecchHHHHHHHHhCCCCEEEE-EEeecCCCC
Q 025413 153 ELNLKVCKLSTGDSLDMSS-------------QDETSIT---ANDATIKDMEGAAVAYVADLFKVPALFV-KAVTDLVDG 215 (253)
Q Consensus 153 ~~~~~~G~i~sgd~~~~~~-------------~~~~~l~---~~~~~~vdME~aava~~a~~~~ip~~~i-r~ISD~~~~ 215 (253)
++....|...+.|-|+... ++...|+ ..|+-.+|||+.-+|.++++.|+...++ -..-|..++
T Consensus 198 ~~~ti~gnTmctddFYEGQgRlDGa~CdysEkdK~afLek~~a~GVrNIEMEss~FAs~t~~~G~kaavVCVtLlnRl~G 277 (308)
T KOG3728|consen 198 GFQTISGNTMCTDDFYEGQGRLDGAFCDYSEKDKMAFLEKLHALGVRNIEMESSMFASVTQKAGVKAAVVCVTLLNRLKG 277 (308)
T ss_pred CCceeeccceecchhhcccccccccccCcchhhHHHHHHHHHHcCceeeehhHHHHHHHHHhcCcchhhhHHHHHhhccC
Confidence 4567788888888888632 2233344 4599999999999999999999986555 345566666
Q ss_pred CC
Q 025413 216 DK 217 (253)
Q Consensus 216 ~~ 217 (253)
+.
T Consensus 278 DQ 279 (308)
T KOG3728|consen 278 DQ 279 (308)
T ss_pred Cc
Confidence 64
No 45
>PF06516 NUP: Purine nucleoside permease (NUP); InterPro: IPR009486 This family consists of several purine nucleoside permease from both bacteria and fungi [].; GO: 0055085 transmembrane transport
Probab=98.52 E-value=7.1e-06 Score=71.89 Aligned_cols=190 Identities=19% Similarity=0.183 Sum_probs=124.7
Q ss_pred CeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEEC-CeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHH
Q 025413 13 SSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYK-DLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (253)
Q Consensus 13 ~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~-g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~ 91 (253)
+|+.||+.-+.|.++-++.++..+... +| +....+..-.++ ++.|+.+.|| +|+.|||..+..|+..
T Consensus 3 ~KV~VvtmFe~E~q~W~e~~~l~~~i~--vp-G~s~~~~~v~cn~~~~Vc~~~tG---------~G~~nAAasi~AL~ld 70 (314)
T PF06516_consen 3 PKVVVVTMFEGEFQPWLERLDLDHNIT--VP-GLSPLYPPVHCNADGGVCGITTG---------EGEINAAASIMALGLD 70 (314)
T ss_pred ceEEEEeCCCHHHhhhhhccCCCeEEe--eC-CCCCCCCceEEcCCCCEEEEEec---------ccccchHHHHHHHhhC
Confidence 479999999999999999988765533 22 121111111233 3479999999 9999999998888752
Q ss_pred --c--CCCEEEEEeeecccCCCCCCcccEEEeccceeccCCCC-----CCC-cc----cc---CCCccCC-------CC-
Q 025413 92 --L--KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIP-----IPV-FD----LY---GVGQRQA-------FS- 146 (253)
Q Consensus 92 --~--~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~-----~~~-f~----~y---~~~~~p~-------~~- 146 (253)
| .=..+|..||||.=. ....+|++..+.-+++.|...+ +|. |. .| .+.+.|. |.
T Consensus 71 p~FDls~tYfliaGIAGv~P-~~~tlGSvawA~~~Vd~dl~~eiD~Re~P~~w~~Gy~~~g~~~P~~~p~~~~~tevf~L 149 (314)
T PF06516_consen 71 PRFDLSKTYFLIAGIAGVDP-KQGTLGSVAWARYVVDGDLQYEIDAREIPADWPTGYFPYGTKRPNQYPRSVYGTEVFEL 149 (314)
T ss_pred CccCCcceEEEEeecccCCc-CcCceeeeeeeeeeechhhccccccccccCCCCCCCcccCCCCcccCCCCCCCceEEEc
Confidence 2 236799999999655 7899999999999998776542 221 10 00 1112221 10
Q ss_pred Chhhh--------------------------------hcCcceEEEEeeccccccChHh---HHHHHh-C-----CCeEE
Q 025413 147 TPNLL--------------------------------RELNLKVCKLSTGDSLDMSSQD---ETSITA-N-----DATIK 185 (253)
Q Consensus 147 ~~~l~--------------------------------~~~~~~~G~i~sgd~~~~~~~~---~~~l~~-~-----~~~~v 185 (253)
++.|. +.+.+..|-.+|+|.|...... .+.+-+ + .-..-
T Consensus 150 N~~L~~~A~~ltk~v~L~Ds~~~~~~R~~Y~~~~~A~~~P~V~~gDt~tsd~ywhG~~l~~~a~~~~~~~T~G~g~y~~T 229 (314)
T PF06516_consen 150 NPALVDWAYELTKDVELPDSPAAAAYRARYPGYPAAQRPPFVLKGDTLTSDTYWHGARLNEWAEDWVKLWTNGQGTYCTT 229 (314)
T ss_pred CHHHHHHHHHHhcCCccCCCHHHHHHHHhCCCCcccCCCCEEEEccccccCCeeeCcHHHHHHHHHHHHHhCCcccEech
Confidence 12221 1356778889999998775432 222222 1 24567
Q ss_pred ecchHHHHHHHHhCC-------CCEEEEEEeecCCCC
Q 025413 186 DMEGAAVAYVADLFK-------VPALFVKAVTDLVDG 215 (253)
Q Consensus 186 dME~aava~~a~~~~-------ip~~~ir~ISD~~~~ 215 (253)
.||-.|.+++-.+.. -+++++|.+||+--.
T Consensus 230 ~~ED~atl~aL~r~~~~g~vD~~RvlvlRt~SNFdrp 266 (314)
T PF06516_consen 230 AMEDNATLEALTRLAKAGRVDFDRVLVLRTASNFDRP 266 (314)
T ss_pred HHHhHHHHHHHHHHHhcCCcCcceEEEEecccCCCCC
Confidence 999999999877643 258999999999643
No 46
>COG5042 NUP Purine nucleoside permease [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.012 Score=50.60 Aligned_cols=191 Identities=17% Similarity=0.228 Sum_probs=116.2
Q ss_pred cccCeEEEEEcchHhHHHHHHhcCccccCccCCCCCCC--eEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHH
Q 025413 10 EAISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVP--WVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYA 87 (253)
Q Consensus 10 ~~~~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~--~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~ 87 (253)
-..+++.||+-...|+++.++.++..+....+ +.. ++-.....+| |+-+.|| ||+.||+..+..
T Consensus 35 v~~~KVmvItmF~~Eaqpwl~~l~lt~~I~vp---GLs~~yP~v~cn~~g--vcq~tTg---------mG~AnAassvsA 100 (349)
T COG5042 35 VPVPKVMVITMFEIEAQPWLDGLDLTEKIAVP---GLSPDYPAVHCNADG--VCQMTTG---------MGKANAASSVSA 100 (349)
T ss_pred CCCceEEEEEecccccchhhhcCCccceeecc---ccCCCCcccccCccc--hhhhhcc---------cchhhHHHHHHH
Confidence 33458999999999999999999987764321 111 2222222333 7777888 999999998888
Q ss_pred HHHHcCC----CEEEEEeeecccCCCCCCcccEEEeccceeccCCCC-----CC-Cc--cccCC-----CccCCCC----
Q 025413 88 SIQALKP----DLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIP-----IP-VF--DLYGV-----GQRQAFS---- 146 (253)
Q Consensus 88 li~~~~~----~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~~~d~~~~-----~~-~f--~~y~~-----~~~p~~~---- 146 (253)
|+-.-+. ..++..||||-=. ..-.+|..-.+.-+++.|...+ +| +| +.|.. +..|..+
T Consensus 101 L~ls~kfdlt~tyfLiAGIAGidP-~~gtlGSaawARyaVD~dl~~eiD~RE~Pa~Wp~g~~glgt~~pg~kp~~~y~te 179 (349)
T COG5042 101 LLLSKKFDLTKTYFLIAGIAGIDP-KAGTLGSAAWARYAVDADLIHEIDLREIPAGWPYGFYGLGTEGPGVKPPMNYSTE 179 (349)
T ss_pred HHhccccCcceeeeeeeeccccCc-cccccchhHHhhhhcccccccccccccCcCCCCcccccccCCCCCCCCCCCccch
Confidence 8753333 5789999998644 6778888877777776664322 23 11 12322 2222211
Q ss_pred ----Chhhh-------------------------------hcCcceEEEEeeccccccChHh---HHHHHh-----C-CC
Q 025413 147 ----TPNLL-------------------------------RELNLKVCKLSTGDSLDMSSQD---ETSITA-----N-DA 182 (253)
Q Consensus 147 ----~~~l~-------------------------------~~~~~~~G~i~sgd~~~~~~~~---~~~l~~-----~-~~ 182 (253)
+..|+ +.+.+..+-.+|+|.+-..... ...+-+ . .-
T Consensus 180 vf~LN~~L~~~A~altk~v~L~D~~~a~AyRk~Y~~~pA~~pP~V~qcdtas~dtyWhGa~lgq~~~~w~k~lTdg~g~y 259 (349)
T COG5042 180 VFALNERLLDWAYALTKKVVLEDNPEAAAYRKHYVEAPANRPPFVTQCDTASADTYWHGAKLGQRAQDWVKVLTDGKGTY 259 (349)
T ss_pred HHHHHHHHHHHHHHhcCCccccCCHHHHHHHhccccccccCCCeEEeeccccccccchhhhhhHHHHHHHHHhhCCCcce
Confidence 01110 1234566778888887765432 122222 1 23
Q ss_pred eEEecchHHHHHHHHh---CCC----CEEEEEEeecCCCC
Q 025413 183 TIKDMEGAAVAYVADL---FKV----PALFVKAVTDLVDG 215 (253)
Q Consensus 183 ~~vdME~aava~~a~~---~~i----p~~~ir~ISD~~~~ 215 (253)
..-+||--|...+-.+ .|. +++++|.-||+--.
T Consensus 260 cttqqEDnatl~aL~r~a~aG~vdf~RVavlRTaSnfdRp 299 (349)
T COG5042 260 CTTQQEDNATLTALTRAAKAGLVDFNRVAVLRTASNFDRP 299 (349)
T ss_pred EecccccchHHHHHHHHhhcccccceeeEEEeeccccCCC
Confidence 4568887777666433 332 58999999998643
No 47
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=72.40 E-value=14 Score=30.55 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEeeecccC
Q 025413 79 ISASLVTYASIQALKPDLIINAGTAGGFK 107 (253)
Q Consensus 79 ~~aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (253)
..+...+..++++++|+.||++|.+|+-+
T Consensus 46 ~~~~~~l~~~l~~~~PdlVIhlGva~~~~ 74 (202)
T PF01470_consen 46 EKAFEALEELLEEHQPDLVIHLGVAGGRK 74 (202)
T ss_dssp HHHHHHHHHHHHHH--SEEEEEEE-TT-S
T ss_pred HhHHHHHHHHHHhcCCcEEEEEeecCCcc
Confidence 34555667888889999999999999876
No 48
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=71.20 E-value=9.2 Score=32.29 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeecccCCCCCCccc
Q 025413 81 ASLVTYASIQALKPDLIINAGTAGGFKAKGASIGD 115 (253)
Q Consensus 81 aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~~Gd 115 (253)
+...+..++++++|+.||++|.+||.. .+.+=-
T Consensus 49 ~~~~l~~~i~~~~Pd~Vi~~G~a~gr~--~itlEr 81 (222)
T PRK13195 49 SIAAAQQAIAEIEPALVIMLGEYPGRS--MITVER 81 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEeCccCCcC--ceEeEE
Confidence 444677888999999999999999986 344433
No 49
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=71.03 E-value=17 Score=29.94 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccE
Q 025413 80 SASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDV 116 (253)
Q Consensus 80 ~aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~~Gdv 116 (253)
.+...+...|++++|+.||++|-|||.. ++.+=-|
T Consensus 47 ~s~~~l~~~i~~~qPd~vl~iG~A~GR~--~iT~ERV 81 (207)
T COG2039 47 KSIDALVQAIAEVQPDLVLAIGQAGGRT--KITPERV 81 (207)
T ss_pred HHHHHHHHHHHhhCCCeEEEecccCCCC--cCChhhe
Confidence 3455667788999999999999999987 3444333
No 50
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=67.75 E-value=14 Score=30.85 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeeecccC
Q 025413 80 SASLVTYASIQALKPDLIINAGTAGGFK 107 (253)
Q Consensus 80 ~aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (253)
.+...+..++++++|+.||++|.+||.+
T Consensus 48 ~~~~~l~~~~~~~~Pd~vi~~G~a~gr~ 75 (211)
T PRK13196 48 AAMAALSRLLDELQPSAVLLTGLAAGRP 75 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccCCcC
Confidence 3444677888999999999999999986
No 51
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=63.48 E-value=20 Score=29.93 Aligned_cols=29 Identities=31% Similarity=0.349 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEeeecccC
Q 025413 79 ISASLVTYASIQALKPDLIINAGTAGGFK 107 (253)
Q Consensus 79 ~~aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (253)
..+...+..++++++|+.||++|.+|+-+
T Consensus 46 ~~~~~~l~~~l~~~~Pd~vlhlG~a~~r~ 74 (208)
T PRK13194 46 KRAREELEKVLDEIKPDITINLGLAPGRT 74 (208)
T ss_pred HhHHHHHHHHHHHhCCCEEEEeeccCCcc
Confidence 34455567778888999999999999976
No 52
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=63.38 E-value=20 Score=29.93 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeeecccC
Q 025413 80 SASLVTYASIQALKPDLIINAGTAGGFK 107 (253)
Q Consensus 80 ~aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (253)
.+...+..++++++|+.||++|.+|+-+
T Consensus 47 ~~~~~l~~~~~~~~Pd~vl~~G~a~~r~ 74 (209)
T PRK13193 47 KIEDLIVTKIREMKPILTLGIGVAPGRA 74 (209)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccCCcC
Confidence 4455667788889999999999999976
No 53
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=55.15 E-value=39 Score=28.87 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=44.4
Q ss_pred eeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCCCEEEEEeeecccCCC--------CCCcccEEEeccce
Q 025413 58 LHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAK--------GASIGDVFLISDVA 123 (253)
Q Consensus 58 ~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~~~vi~~G~aG~l~~~--------~~~~Gdvvi~~~~~ 123 (253)
-.+.++.|| +-|++..+...+..+++.++||.+|.++=-+++.+| ...+--+||++...
T Consensus 32 I~vrv~gsG-------aKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 32 IDVRVVGSG-------AKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred ceEEEeccC-------CCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCc
Confidence 346677777 448999999888888889999999999999888753 23445677766543
No 54
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=52.70 E-value=85 Score=28.79 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=23.8
Q ss_pred chHHHHHHHHhCCCCEEEEEEeecCCCC
Q 025413 188 EGAAVAYVADLFKVPALFVKAVTDLVDG 215 (253)
Q Consensus 188 E~aava~~a~~~~ip~~~ir~ISD~~~~ 215 (253)
-|.++-.=|-.+|.|++++|-.+.....
T Consensus 288 DSGgiqEEAp~lg~Pvl~lR~~TERPE~ 315 (383)
T COG0381 288 DSGGIQEEAPSLGKPVLVLRDTTERPEG 315 (383)
T ss_pred cCCchhhhHHhcCCcEEeeccCCCCccc
Confidence 3788888888999999999999988754
No 55
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=51.17 E-value=39 Score=28.23 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeecccC
Q 025413 81 ASLVTYASIQALKPDLIINAGTAGGFK 107 (253)
Q Consensus 81 aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (253)
+...+..++++++|+.||++|.+|+..
T Consensus 46 ~~~~l~~~l~~~~Pd~vi~~G~a~g~~ 72 (212)
T TIGR00504 46 AIEALQQAIDEIEPDIVIMLGLAPGRS 72 (212)
T ss_pred HHHHHHHHHHHHCCCEEEEeccCCCcC
Confidence 344567778888999999999999876
No 56
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=47.75 E-value=44 Score=26.24 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHc-CCCEEEEEeeecccC
Q 025413 80 SASLVTYASIQAL-KPDLIINAGTAGGFK 107 (253)
Q Consensus 80 ~aa~~~~~li~~~-~~~~vi~~G~aG~l~ 107 (253)
+.+-.+.++.+.. +|+.||.+|.|...+
T Consensus 70 ~~~~~l~~~~e~~p~pk~VIA~GsCA~~G 98 (145)
T TIGR01957 70 KMAPALRRLYDQMPEPKWVISMGACANSG 98 (145)
T ss_pred HHHHHHHHHHHhccCCceEEEecceeecC
Confidence 3455555555433 799999999996554
No 57
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=47.57 E-value=50 Score=27.63 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeecccC
Q 025413 81 ASLVTYASIQALKPDLIINAGTAGGFK 107 (253)
Q Consensus 81 aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (253)
+...+..++.+++|+.||.+|.+|+..
T Consensus 49 ~~~~l~~~l~~~~Pd~vih~G~a~~~~ 75 (215)
T PRK13197 49 SAEVLKEAIEEVQPDAVICIGQAGGRT 75 (215)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCC
Confidence 444556777888999999999999876
No 58
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=43.32 E-value=52 Score=26.88 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHHHc-CCCEEEEEeeecccC
Q 025413 77 GTISASLVTYASIQAL-KPDLIINAGTAGGFK 107 (253)
Q Consensus 77 G~~~aa~~~~~li~~~-~~~~vi~~G~aG~l~ 107 (253)
-..+.+-.+.++.+.- .|+.||.+|.|..-+
T Consensus 83 VT~~m~~~l~r~ye~~p~pK~VIAvGsCA~~G 114 (183)
T PRK14815 83 VTYKMALAVRRIYDQMPEPKWVIAMGACASSG 114 (183)
T ss_pred CchhhHHHHHHHHHhCCCCCEEEEeccccccC
Confidence 3344445566665543 899999999995443
No 59
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=41.97 E-value=71 Score=26.04 Aligned_cols=27 Identities=44% Similarity=0.556 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeecccC
Q 025413 81 ASLVTYASIQALKPDLIINAGTAGGFK 107 (253)
Q Consensus 81 aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (253)
+...+.+++++++|+.+|++|.+|+-+
T Consensus 48 ~~~~~~~~~~~~~pd~vlhlG~~~~~~ 74 (194)
T cd00501 48 AVEVLPELIEEHKPDLVIHVGLAGGRS 74 (194)
T ss_pred HHHHHHHHHHHhCCCEEEEecccCCCC
Confidence 344567788889999999999999875
No 60
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=40.92 E-value=45 Score=26.97 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=22.2
Q ss_pred cChhHHHHHHHHHHHHc-CCCEEEEEeeeccc
Q 025413 76 VGTISASLVTYASIQAL-KPDLIINAGTAGGF 106 (253)
Q Consensus 76 iG~~~aa~~~~~li~~~-~~~~vi~~G~aG~l 106 (253)
.-..+.+-.+.++.+.. .|+.||.+|.|..-
T Consensus 79 ~vT~km~~~l~~~yeqmPePK~VIA~G~CA~s 110 (173)
T PRK14818 79 TLTYKMAERARLLYDQMPEPKYVISMGSCSNC 110 (173)
T ss_pred cCccccHHHHHHHHHhCCCCCEEEEecccccc
Confidence 45556666666666555 89999999998543
No 61
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=39.66 E-value=58 Score=26.74 Aligned_cols=32 Identities=9% Similarity=0.203 Sum_probs=22.0
Q ss_pred cChhHHHHHHHHHHHHc-CCCEEEEEeeecccC
Q 025413 76 VGTISASLVTYASIQAL-KPDLIINAGTAGGFK 107 (253)
Q Consensus 76 iG~~~aa~~~~~li~~~-~~~~vi~~G~aG~l~ 107 (253)
.-..+.+-.+.++.++. .|+.||.+|.|..-+
T Consensus 76 ~Vt~km~~~l~~~y~qmPePK~VIA~GaCA~sG 108 (189)
T PRK14813 76 TVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCG 108 (189)
T ss_pred cCchhhHHHHHHHHHhCCCCCEEEEecccccCC
Confidence 34445555566666544 899999999987543
No 62
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=39.38 E-value=47 Score=28.02 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHc-CCCEEEEEeeecccC
Q 025413 79 ISASLVTYASIQAL-KPDLIINAGTAGGFK 107 (253)
Q Consensus 79 ~~aa~~~~~li~~~-~~~~vi~~G~aG~l~ 107 (253)
.+.+-.+.++.+.. .|+.||.+|.|..-+
T Consensus 83 ~km~~~L~rlyeqmPePK~VIA~GaCA~sG 112 (225)
T CHL00023 83 MKMAPSLVRLYEQMPEPKYVIAMGACTITG 112 (225)
T ss_pred cccHHHHHHHHHhcCCCCeEEEEccccccC
Confidence 34455566665544 899999999994433
No 63
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=37.57 E-value=88 Score=26.30 Aligned_cols=44 Identities=9% Similarity=0.249 Sum_probs=32.0
Q ss_pred eeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCCCEEEEEeeecccCC
Q 025413 58 LHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKA 108 (253)
Q Consensus 58 ~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~~~vi~~G~aG~l~~ 108 (253)
..|.++-|| --|++...-.+....++.++||.||.+|=--+..+
T Consensus 32 i~vrVvgsg-------aKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPG 75 (277)
T COG1927 32 IEVRVVGSG-------AKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPG 75 (277)
T ss_pred ceEEEeccc-------cccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC
Confidence 456777777 12677655556668889999999999997766653
No 64
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=37.42 E-value=67 Score=26.33 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHc-CCCEEEEEeeecccC
Q 025413 80 SASLVTYASIQAL-KPDLIINAGTAGGFK 107 (253)
Q Consensus 80 ~aa~~~~~li~~~-~~~~vi~~G~aG~l~ 107 (253)
+.+-.+.++.+.. +|+.||.+|.|..-+
T Consensus 86 ~m~~~l~~~yeqmp~pk~VIAvGsCA~~G 114 (186)
T PRK14814 86 KMAPVLRQIYDQMAEPKFVISVGACASSG 114 (186)
T ss_pred hhHHHHHHHHHhcCCCCeEEEeccccccC
Confidence 3445555555443 799999999995544
No 65
>PRK06455 riboflavin synthase; Provisional
Probab=34.97 E-value=1.7e+02 Score=23.21 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=21.9
Q ss_pred cChhHHHHHHHHHHHHcCCCEEEEEeee
Q 025413 76 VGTISASLVTYASIQALKPDLIINAGTA 103 (253)
Q Consensus 76 iG~~~aa~~~~~li~~~~~~~vi~~G~a 103 (253)
+|.-.--.++..|++.-+.|.||.+|.-
T Consensus 39 PGa~ELP~aakkL~~~~~yDaVIaLG~V 66 (155)
T PRK06455 39 PGIKDLPVAAKKLIEEEGCDIVMALGMP 66 (155)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEecce
Confidence 5777777777888876778888888876
No 66
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=34.07 E-value=61 Score=26.52 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHc-CCCEEEEEeeecccC
Q 025413 81 ASLVTYASIQAL-KPDLIINAGTAGGFK 107 (253)
Q Consensus 81 aa~~~~~li~~~-~~~~vi~~G~aG~l~ 107 (253)
.+-.+.++.+.. +|+.||.+|.|...+
T Consensus 88 ~~~~l~~~~e~mp~pk~VIA~GaCA~~G 115 (183)
T PRK06411 88 MAPALRRLYDQMPEPKWVISMGSCANSG 115 (183)
T ss_pred chHHHHHHHHHcCcCCeEEEEecccccC
Confidence 344455555433 799999999995554
No 67
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=32.57 E-value=1.1e+02 Score=24.19 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=26.2
Q ss_pred EEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCCCEEEEE
Q 025413 60 LNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINA 100 (253)
Q Consensus 60 v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~~~vi~~ 100 (253)
.++..|| ++|-||..-|.+++.-+...+...+++=
T Consensus 3 ~vIwltG------lsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTG------LSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEES------STTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEEC------CCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 5677788 7899999988888888876666665543
No 68
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=31.16 E-value=89 Score=25.52 Aligned_cols=31 Identities=16% Similarity=0.092 Sum_probs=21.1
Q ss_pred ChhHHHHHHHHHHHHc-CCCEEEEEeeecccC
Q 025413 77 GTISASLVTYASIQAL-KPDLIINAGTAGGFK 107 (253)
Q Consensus 77 G~~~aa~~~~~li~~~-~~~~vi~~G~aG~l~ 107 (253)
-..+.+-.+.++.+.- +|+.||.+|.|..-+
T Consensus 91 VT~~m~~~l~~~~e~~p~pK~VIAvGsCA~~G 122 (182)
T PRK14816 91 ITNKMAPVLKRLYDQMADPKYVIAVGGCAVSG 122 (182)
T ss_pred CcchhHHHHHHHHHhcCCCCEEEEeccccccC
Confidence 3334444555555433 899999999997765
No 69
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=30.31 E-value=1e+02 Score=26.39 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecc
Q 025413 83 LVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISD 121 (253)
Q Consensus 83 ~~~~~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~ 121 (253)
.++..+|++++|+.++.-|+..+.. .-++|+.+|.+.
T Consensus 196 ~~V~dlIk~~~P~ivl~Ghihe~~~--~e~lG~TlVVNP 232 (255)
T PF14582_consen 196 AAVRDLIKTYNPDIVLCGHIHESHG--KESLGKTLVVNP 232 (255)
T ss_dssp HHHHHHHHHH--SEEEE-SSS-EE----EEETTEEEEE-
T ss_pred HHHHHHHHhcCCcEEEecccccchh--hHHhCCEEEecC
Confidence 4567899999999999855554543 357888877654
No 70
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=30.12 E-value=56 Score=27.28 Aligned_cols=28 Identities=39% Similarity=0.415 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEeeeccc
Q 025413 79 ISASLVTYASIQALKPDLIINAGTAGGF 106 (253)
Q Consensus 79 ~~aa~~~~~li~~~~~~~vi~~G~aG~l 106 (253)
+.=-.+.++||-+.+|+.||=+|++-|=
T Consensus 18 P~Dm~~~qeli~~~kPd~IIE~Gi~~GG 45 (206)
T PF04989_consen 18 PQDMVAYQELIWELKPDLIIETGIAHGG 45 (206)
T ss_dssp HHHHHHHHHHHHHH--SEEEEE--TTSH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 3444568999999999999999999763
No 71
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=29.67 E-value=1.2e+02 Score=23.73 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHc-CCCEEEEEeeecccC
Q 025413 80 SASLVTYASIQAL-KPDLIINAGTAGGFK 107 (253)
Q Consensus 80 ~aa~~~~~li~~~-~~~~vi~~G~aG~l~ 107 (253)
+.+..+.++.+.. .|+.||.+|.|+--.
T Consensus 62 ~~~e~lkk~Yea~PePKiViA~GaCa~~G 90 (148)
T COG3260 62 QMREPLKKAYEAMPEPKIVIAVGACALSG 90 (148)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEcccccCC
Confidence 4444455554444 799999999997544
No 72
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=29.60 E-value=2.2e+02 Score=23.67 Aligned_cols=93 Identities=10% Similarity=0.030 Sum_probs=48.1
Q ss_pred CeEEEEEcchHhHHHHHHhcCccccCccCCCCC-------CCeEEEEE----------EECCeeEEEEecCCCCCCCcCC
Q 025413 13 SSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEG-------VPWVRYHG----------TYKDLHLNIIWPGKDTSLEVDS 75 (253)
Q Consensus 13 ~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~g----------~~~g~~v~l~~~G~~~~~~~~g 75 (253)
++|+||+|...--..+++....+....+-+.+. .+.+.-.. -+.|+++++-.-|. ..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~----~~-- 74 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA----GA-- 74 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC----CC--
Confidence 479999999876666665543332211000000 11111111 13467777776651 01
Q ss_pred cChhH----HHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcc
Q 025413 76 VGTIS----ASLVTYASIQALKPDLIINAGTAGGFKAKGASIG 114 (253)
Q Consensus 76 iG~~~----aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~~G 114 (253)
.+.-. +..++-.+++.-+...+|.+|=||+|- +.+|
T Consensus 75 ~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~---id~g 114 (211)
T COG2910 75 SDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLE---IDEG 114 (211)
T ss_pred CChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceE---EcCC
Confidence 12111 122233344444789999999999995 5566
No 73
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=29.52 E-value=1.1e+02 Score=26.53 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHc-CCCEEEEEeeecccC
Q 025413 80 SASLVTYASIQAL-KPDLIINAGTAGGFK 107 (253)
Q Consensus 80 ~aa~~~~~li~~~-~~~~vi~~G~aG~l~ 107 (253)
+.+-.+.++.+.- +|+.||.+|.|....
T Consensus 84 km~~~L~rlyeqmP~PK~VIAvGaCA~~G 112 (264)
T PRK14819 84 KMAPQVVRLYNQMPEPRYVISMGACATSG 112 (264)
T ss_pred hhHHHHHHHHHhccCCCeEEEEccccccC
Confidence 3334555555433 899999999995443
No 74
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=28.82 E-value=88 Score=25.51 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=17.9
Q ss_pred HHHHHHHHHHc-CCCEEEEEeeecccC
Q 025413 82 SLVTYASIQAL-KPDLIINAGTAGGFK 107 (253)
Q Consensus 82 a~~~~~li~~~-~~~~vi~~G~aG~l~ 107 (253)
+-.+.++.+.. +|+.||.+|.|...+
T Consensus 88 ~~~l~~~~e~~p~pk~VIAvGaCA~~G 114 (180)
T PRK14820 88 APVLKQVYLQMAEPRWVVAVGACASSG 114 (180)
T ss_pred HHHHHHHHHhcCCCCeEEEEecccccC
Confidence 44455554433 899999999996555
No 75
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=27.13 E-value=1.9e+02 Score=19.59 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=45.7
Q ss_pred cCeEEEEEcchHhHHHHHHhcCccccCccCCCCCCCeEEEEEEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHH
Q 025413 12 ISSVVIIIAMQTEAMPLVNKFELKEDQDSVFPEGVPWVRYHGTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQA 91 (253)
Q Consensus 12 ~~~i~Ii~Al~~E~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~ 91 (253)
+..+.|....+.+...+.+.|....... ....++.-.-.| . ++.+| +|..+-.+..++|-++
T Consensus 5 v~~~~i~p~~~~d~~kl~~aL~~l~~eD------P~l~~~~d~et~-e--~~l~g---------~Gelhlev~~~~L~~~ 66 (75)
T PF14492_consen 5 VLSVAIEPKNKEDEPKLSEALQKLSEED------PSLRVERDEETG-E--LILSG---------MGELHLEVLLERLKRR 66 (75)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHH-------TTSEEEEETTTS-E--EEEEE---------SSHHHHHHHHHHHHHT
T ss_pred eEEEEEEECCHhHHHHHHHHHHHHHhcC------CeEEEEEcchhc-e--EEEEE---------CCHHHHHHHHHHHHHH
Confidence 4467888888888888888877655432 123443321222 3 33345 8999999999999998
Q ss_pred cCCCEE
Q 025413 92 LKPDLI 97 (253)
Q Consensus 92 ~~~~~v 97 (253)
|+++.-
T Consensus 67 ~~v~v~ 72 (75)
T PF14492_consen 67 FGVEVE 72 (75)
T ss_dssp TCEBEE
T ss_pred HCCeeE
Confidence 887754
No 76
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=26.60 E-value=81 Score=25.07 Aligned_cols=44 Identities=25% Similarity=0.113 Sum_probs=31.1
Q ss_pred ECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCCCEEEEEeeecccC
Q 025413 55 YKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFK 107 (253)
Q Consensus 55 ~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~~~vi~~G~aG~l~ 107 (253)
+.+.+++++-.+. . -|.. ...+..+|++++.+.|..+|++|+..
T Consensus 37 ~~~yD~i~lG~w~------d-~G~~--d~~~~~fl~~l~~KkV~lF~T~G~~~ 80 (160)
T PF12641_consen 37 LEDYDLIFLGFWI------D-KGTP--DKDMKEFLKKLKGKKVALFGTAGAGP 80 (160)
T ss_pred CCCCCEEEEEcCc------c-CCCC--CHHHHHHHHHccCCeEEEEEecCCCC
Confidence 4456777777662 1 2433 33456788889999999999999875
No 77
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=26.40 E-value=91 Score=27.18 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=23.5
Q ss_pred CcCCcChhHHHHHHHHHHHHcCCCEEEEEee
Q 025413 72 EVDSVGTISASLVTYASIQALKPDLIINAGT 102 (253)
Q Consensus 72 ~~~giG~~~aa~~~~~li~~~~~~~vi~~G~ 102 (253)
+.-||||.-.+..+..++++.+ ..|+.+|.
T Consensus 7 GKGGIGKST~~~Nlsaala~~G-~kVl~iGC 36 (273)
T PF00142_consen 7 GKGGIGKSTTASNLSAALAEMG-KKVLQIGC 36 (273)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTT---EEEEEE
T ss_pred cCCCcccChhhhHHHHHHHhcc-ceeeEecc
Confidence 3556999999999999999777 78888884
No 78
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=26.29 E-value=1.4e+02 Score=26.31 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=32.0
Q ss_pred eeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCCC-EEEEEeeec
Q 025413 58 LHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPD-LIINAGTAG 104 (253)
Q Consensus 58 ~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~~-~vi~~G~aG 104 (253)
+.++++.+| .-|+||...+..+...+++.+.+ .++-+-+||
T Consensus 47 k~iI~VlSG------KGGVGKSTvt~nla~~La~~g~~vglLD~Dl~G 88 (300)
T KOG3022|consen 47 KHIILVLSG------KGGVGKSTVTVNLALALASEGKKVGLLDADLCG 88 (300)
T ss_pred ceEEEEEeC------CCCCchhHHHHHHHHHHhcCCCcEEEEeecccC
Confidence 467888888 78899999999999998876543 455667777
No 79
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=25.33 E-value=1.7e+02 Score=25.18 Aligned_cols=59 Identities=14% Similarity=0.258 Sum_probs=35.8
Q ss_pred CeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCCCEEEEEeeecccCCC--------CCCcccEEEeccc
Q 025413 57 DLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAK--------GASIGDVFLISDV 122 (253)
Q Consensus 57 g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~~~vi~~G~aG~l~~~--------~~~~Gdvvi~~~~ 122 (253)
+-.+.++.|| +-|++...-..+..+++.++||.+|.++=-+++.+| .-.+--+||++.-
T Consensus 30 dI~vrv~gsG-------aKm~pe~~e~~~~~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 30 DIDVRVVGSG-------AKMGPEDVEEVVTKMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAP 96 (276)
T ss_dssp SEEEEEEEEE-------T--SHHHHHHHHHHHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGG
T ss_pred CceEEEeccC-------CCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCC
Confidence 3456677777 348888776666777778999999999988887521 1234467777654
No 80
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=24.66 E-value=1.3e+02 Score=26.05 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=30.5
Q ss_pred cChhHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEE
Q 025413 76 VGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFL 118 (253)
Q Consensus 76 iG~~~aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi 118 (253)
++...+...+.+.+.+.++..+..-|.+|-+++..++++|+-=
T Consensus 129 iD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~~~~~~di~~ 171 (268)
T PRK15116 129 IDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVVDLAK 171 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCeEEEEeeec
Confidence 5666676777777777899888887777777754466666543
No 81
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=23.73 E-value=2e+02 Score=24.52 Aligned_cols=36 Identities=6% Similarity=-0.104 Sum_probs=25.5
Q ss_pred eeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCCCEEEEE
Q 025413 58 LHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINA 100 (253)
Q Consensus 58 ~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~~~vi~~ 100 (253)
.+++.+.++ .+|.||...+..+...+++.+-+ |+.+
T Consensus 103 ~~vi~vts~------~~g~Gktt~a~nLA~~la~~g~~-VllI 138 (274)
T TIGR03029 103 RKALAVVSA------KSGEGCSYIAANLAIVFSQLGEK-TLLI 138 (274)
T ss_pred CeEEEEECC------CCCCCHHHHHHHHHHHHHhcCCe-EEEE
Confidence 345555554 68899999999988888877644 3444
No 82
>PRK07667 uridine kinase; Provisional
Probab=23.63 E-value=1.9e+02 Score=23.33 Aligned_cols=31 Identities=6% Similarity=-0.040 Sum_probs=22.0
Q ss_pred eeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCC
Q 025413 58 LHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKP 94 (253)
Q Consensus 58 ~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~ 94 (253)
..+++..+| .+|.||..-+..+...+...++
T Consensus 16 ~~~iIgI~G------~~gsGKStla~~L~~~l~~~~~ 46 (193)
T PRK07667 16 NRFILGIDG------LSRSGKTTFVANLKENMKQEGI 46 (193)
T ss_pred CCEEEEEEC------CCCCCHHHHHHHHHHHHHhCCC
Confidence 346777777 6889999988777776664433
No 83
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=23.42 E-value=1.5e+02 Score=26.47 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=16.9
Q ss_pred cCCcChhHHHHHHHHHHHHcCCCEEEEE
Q 025413 73 VDSVGTISASLVTYASIQALKPDLIINA 100 (253)
Q Consensus 73 ~~giG~~~aa~~~~~li~~~~~~~vi~~ 100 (253)
..|+||...|+++..-++..+ +.++.+
T Consensus 10 KGGVGKTT~aaA~A~~lA~~g-~kvLlv 36 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAESG-KKVLLV 36 (322)
T ss_pred CCcccHHHHHHHHHHHHHHcC-CcEEEE
Confidence 567999766666665666666 434433
No 84
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=23.16 E-value=3.1e+02 Score=21.73 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=18.7
Q ss_pred cCeEEEEEcchHhHHHHHHhcCc
Q 025413 12 ISSVVIIIAMQTEAMPLVNKFEL 34 (253)
Q Consensus 12 ~~~i~Ii~Al~~E~~~~~~~l~~ 34 (253)
-.+|.++.+.+++++.+.+.+..
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~ 68 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRA 68 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHH
Confidence 35799999999999987776654
No 85
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=23.12 E-value=1.1e+02 Score=26.83 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=30.5
Q ss_pred eEEEEeeccccccChHhHHHHHhCCCeEEecchHHHHHHHHhCCCCEEEE
Q 025413 157 KVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFV 206 (253)
Q Consensus 157 ~~G~i~sgd~~~~~~~~~~~l~~~~~~~vdME~aava~~a~~~~ip~~~i 206 (253)
..+.++-.|++.++.+..+++- +.-+|.+|+.+|+||.+.
T Consensus 234 vdavvvGADrVarNGDTANKIG----------Ty~LAv~aKhhgipFyva 273 (354)
T KOG1468|consen 234 VDAVVVGADRVARNGDTANKIG----------TYQLAVLAKHHGIPFYVA 273 (354)
T ss_pred CCEEEEcccceeccCcchhhhh----------hhHHHHHHHhcCCceEEe
Confidence 3567788888887765555554 477899999999999876
No 86
>PRK06455 riboflavin synthase; Provisional
Probab=22.09 E-value=2.8e+02 Score=22.05 Aligned_cols=28 Identities=7% Similarity=-0.034 Sum_probs=23.5
Q ss_pred hHHHHHHHHhCCCCEEEEEEeecCCCCC
Q 025413 189 GAAVAYVADLFKVPALFVKAVTDLVDGD 216 (253)
Q Consensus 189 ~aava~~a~~~~ip~~~ir~ISD~~~~~ 216 (253)
+.++.++.-..++|.+.+..=-|.+.++
T Consensus 80 S~GL~~lsL~t~~PVi~v~vhede~~~~ 107 (155)
T PRK06455 80 SIGLIMAQLMTNKHIIEVFVHEDEAKDE 107 (155)
T ss_pred HHHHHHHHhhhCCCEEEEEecccccCCH
Confidence 4789999999999999999888877544
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.71 E-value=4e+02 Score=21.07 Aligned_cols=23 Identities=0% Similarity=0.024 Sum_probs=18.7
Q ss_pred CeEEEEEcchHhHHHHHHhcCcc
Q 025413 13 SSVVIIIAMQTEAMPLVNKFELK 35 (253)
Q Consensus 13 ~~i~Ii~Al~~E~~~~~~~l~~~ 35 (253)
.+|.++.+.++.++.+.+.+...
T Consensus 49 ~~ifllG~~~~~~~~~~~~l~~~ 71 (172)
T PF03808_consen 49 KRIFLLGGSEEVLEKAAANLRRR 71 (172)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHH
Confidence 47999999999999888777643
No 88
>PRK13236 nitrogenase reductase; Reviewed
Probab=21.54 E-value=2.1e+02 Score=24.86 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=22.1
Q ss_pred cCCcChhHHHHHHHHHHHHcCCCEEEE
Q 025413 73 VDSVGTISASLVTYASIQALKPDLIIN 99 (253)
Q Consensus 73 ~~giG~~~aa~~~~~li~~~~~~~vi~ 99 (253)
.-|+||...+..+...+++.+-+.++.
T Consensus 14 KGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 14 KGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred CCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 677999999999999999877665554
No 89
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=21.17 E-value=2e+02 Score=23.97 Aligned_cols=59 Identities=22% Similarity=0.180 Sum_probs=46.2
Q ss_pred EEECCeeEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEeccce
Q 025413 53 GTYKDLHLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVA 123 (253)
Q Consensus 53 g~~~g~~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvvi~~~~~ 123 (253)
|.++..+|+++.+| -|...--..+....++++.+.|-.++.-.+- =.+..|+++.-...
T Consensus 82 g~i~~~DvviaiS~---------SGeT~el~~~~~~aK~~g~~liaiT~~~~Ss---Lak~aDvvl~ip~~ 140 (202)
T COG0794 82 GMITPGDVVIAISG---------SGETKELLNLAPKAKRLGAKLIAITSNPDSS---LAKAADVVLVIPVK 140 (202)
T ss_pred cCCCCCCEEEEEeC---------CCcHHHHHHHHHHHHHcCCcEEEEeCCCCCh---HHHhcCeEEEccCc
Confidence 34667789999999 7988877777777788999999999988872 23677999876653
No 90
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=20.79 E-value=2.2e+02 Score=24.03 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=29.0
Q ss_pred cChhHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEE
Q 025413 76 VGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVF 117 (253)
Q Consensus 76 iG~~~aa~~~~~li~~~~~~~vi~~G~aG~l~~~~~~~Gdvv 117 (253)
+....+...+.+...+.++..|...|.+|-+++..+++.|+-
T Consensus 110 iD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~ 151 (231)
T cd00755 110 IDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADIS 151 (231)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEe
Confidence 455666666677777778888888777777775455666653
No 91
>CHL00175 minD septum-site determining protein; Validated
Probab=20.57 E-value=2.2e+02 Score=24.26 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=23.7
Q ss_pred eEEEEecCCCCCCCcCCcChhHHHHHHHHHHHHcCCCE
Q 025413 59 HLNIIWPGKDTSLEVDSVGTISASLVTYASIQALKPDL 96 (253)
Q Consensus 59 ~v~l~~~G~~~~~~~~giG~~~aa~~~~~li~~~~~~~ 96 (253)
+++.+.+| ..|+||...+..+..++.+.+-+.
T Consensus 16 ~vi~v~s~------KGGvGKTt~a~nLA~~La~~g~~v 47 (281)
T CHL00175 16 RIIVITSG------KGGVGKTTTTANLGMSIARLGYRV 47 (281)
T ss_pred eEEEEEcC------CCCCcHHHHHHHHHHHHHhCCCeE
Confidence 35555554 678999999999888888776443
Done!