Query 025414
Match_columns 253
No_of_seqs 119 out of 743
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 05:33:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1444 Nucleotide-sugar trans 99.9 1.2E-25 2.7E-30 206.9 10.7 141 41-201 10-150 (314)
2 KOG1441 Glucose-6-phosphate/ph 99.9 3E-23 6.4E-28 192.8 8.1 168 46-238 20-214 (316)
3 PTZ00343 triose or hexose phos 99.8 4.5E-18 9.8E-23 159.3 13.6 138 42-199 48-185 (350)
4 TIGR00817 tpt Tpt phosphate/ph 99.7 9.9E-17 2.2E-21 145.8 11.4 133 45-199 4-136 (302)
5 COG5070 VRG4 Nucleotide-sugar 99.7 1.1E-16 2.5E-21 142.4 6.3 133 45-200 8-140 (309)
6 KOG1442 GDP-fucose transporter 99.6 4.1E-17 8.8E-22 148.6 1.9 129 44-183 29-164 (347)
7 PF08449 UAA: UAA transporter 99.3 4.5E-12 9.8E-17 116.1 9.6 132 47-200 5-136 (303)
8 KOG1443 Predicted integral mem 99.0 1.7E-10 3.7E-15 106.8 2.7 126 47-183 20-146 (349)
9 PF00892 EamA: EamA-like trans 98.0 1.9E-05 4E-10 60.9 6.6 118 58-198 6-124 (126)
10 KOG1580 UDP-galactose transpor 97.8 8.4E-06 1.8E-10 74.0 2.0 107 71-199 50-156 (337)
11 PF06027 DUF914: Eukaryotic pr 97.4 0.00089 1.9E-08 63.3 10.0 64 120-183 78-141 (334)
12 TIGR00950 2A78 Carboxylate/Ami 97.3 0.0014 3E-08 57.6 8.5 104 59-183 5-109 (260)
13 PF04142 Nuc_sug_transp: Nucle 97.1 0.00046 9.9E-09 62.3 4.0 64 120-183 16-79 (244)
14 KOG1581 UDP-galactose transpor 97.1 0.0044 9.5E-08 58.0 9.8 122 47-183 13-145 (327)
15 KOG1583 UDP-N-acetylglucosamin 96.9 8E-05 1.7E-09 68.9 -2.8 129 47-201 9-138 (330)
16 TIGR00688 rarD rarD protein. T 96.8 0.013 2.7E-07 52.0 10.7 128 46-197 9-139 (256)
17 PRK15430 putative chlorampheni 96.8 0.015 3.3E-07 53.0 10.9 115 63-198 28-143 (296)
18 TIGR00950 2A78 Carboxylate/Ami 96.5 0.033 7.2E-07 48.8 11.1 112 57-183 142-254 (260)
19 PF13536 EmrE: Multidrug resis 96.4 0.0057 1.2E-07 48.2 4.5 68 124-199 37-105 (113)
20 TIGR03340 phn_DUF6 phosphonate 95.9 0.09 1.9E-06 47.5 10.6 67 124-197 66-132 (281)
21 KOG1582 UDP-galactose transpor 95.9 0.021 4.5E-07 53.2 6.4 113 55-183 55-168 (367)
22 PLN00411 nodulin MtN21 family 95.6 0.13 2.8E-06 48.9 11.1 117 52-183 22-146 (358)
23 COG0697 RhaT Permeases of the 95.5 0.24 5.3E-06 43.2 11.6 61 123-183 72-133 (292)
24 PRK11689 aromatic amino acid e 95.4 0.16 3.6E-06 46.2 10.4 113 46-183 11-127 (295)
25 PRK11453 O-acetylserine/cystei 95.3 0.2 4.4E-06 45.6 10.9 99 61-183 22-122 (299)
26 PRK15051 4-amino-4-deoxy-L-ara 95.2 0.031 6.8E-07 44.5 4.4 65 129-200 45-109 (111)
27 PRK11272 putative DMT superfam 94.8 0.44 9.5E-06 43.3 11.6 105 59-183 24-131 (292)
28 PRK11272 putative DMT superfam 94.8 0.62 1.3E-05 42.3 12.4 107 74-199 177-284 (292)
29 PF03151 TPT: Triose-phosphate 94.7 0.32 6.9E-06 39.2 9.3 65 119-183 79-143 (153)
30 PLN00411 nodulin MtN21 family 94.7 0.59 1.3E-05 44.5 12.3 123 59-199 205-327 (358)
31 TIGR03340 phn_DUF6 phosphonate 92.6 0.29 6.4E-06 44.1 6.1 59 132-197 222-280 (281)
32 PRK10532 threonine and homoser 92.1 1.6 3.5E-05 39.6 10.4 94 61-177 30-123 (293)
33 KOG2234 Predicted UDP-galactos 91.9 1.1 2.4E-05 42.9 9.2 73 119-199 91-163 (345)
34 PRK10452 multidrug efflux syst 91.8 0.5 1.1E-05 38.5 5.9 69 123-198 32-101 (120)
35 COG0697 RhaT Permeases of the 91.6 3.8 8.2E-05 35.6 11.7 73 120-199 213-286 (292)
36 KOG3912 Predicted integral mem 90.8 0.92 2E-05 42.7 7.3 62 122-183 87-148 (372)
37 PRK11453 O-acetylserine/cystei 90.8 4.8 0.0001 36.6 12.0 56 137-199 231-286 (299)
38 PRK10650 multidrug efflux syst 90.4 1.2 2.7E-05 35.7 6.8 64 127-197 41-105 (109)
39 PRK10532 threonine and homoser 90.3 5.5 0.00012 36.2 11.9 58 134-198 222-279 (293)
40 PRK11431 multidrug efflux syst 90.2 1 2.2E-05 35.9 6.1 66 125-197 33-99 (105)
41 PRK09541 emrE multidrug efflux 90.0 0.9 1.9E-05 36.4 5.7 64 127-197 36-100 (110)
42 PRK11689 aromatic amino acid e 89.8 4.7 0.0001 36.7 11.1 60 132-198 226-285 (295)
43 TIGR00776 RhaT RhaT L-rhamnose 89.4 4.5 9.7E-05 37.0 10.6 68 125-199 215-287 (290)
44 PTZ00343 triose or hexose phos 89.3 5.6 0.00012 37.4 11.5 136 44-183 195-338 (350)
45 PRK15430 putative chlorampheni 88.3 6.9 0.00015 35.6 11.1 54 130-183 222-275 (296)
46 COG2510 Predicted membrane pro 88.1 1.4 3.1E-05 36.8 5.7 116 58-197 18-136 (140)
47 PF08449 UAA: UAA transporter 87.5 8.7 0.00019 35.1 11.3 140 44-197 155-294 (303)
48 COG2076 EmrE Membrane transpor 86.1 1.7 3.6E-05 35.0 5.0 65 126-197 35-100 (106)
49 TIGR00817 tpt Tpt phosphate/ph 85.1 5.9 0.00013 35.9 8.8 57 136-199 236-292 (302)
50 PF06027 DUF914: Eukaryotic pr 82.9 4.5 9.8E-05 38.5 7.2 50 141-197 253-302 (334)
51 PRK02971 4-amino-4-deoxy-L-ara 80.6 1.7 3.7E-05 35.6 3.1 64 129-199 56-121 (129)
52 KOG2765 Predicted membrane pro 79.3 0.57 1.2E-05 45.4 -0.2 64 120-183 158-221 (416)
53 TIGR00803 nst UDP-galactose tr 75.8 0.92 2E-05 39.4 0.2 50 144-200 1-50 (222)
54 TIGR00776 RhaT RhaT L-rhamnose 73.9 17 0.00038 33.1 8.1 62 122-183 56-126 (290)
55 PF00893 Multi_Drug_Res: Small 70.6 8.1 0.00018 29.6 4.3 53 129-181 37-90 (93)
56 PF10639 UPF0546: Uncharacteri 67.4 3.4 7.3E-05 33.5 1.6 69 120-196 41-110 (113)
57 PF05653 Mg_trans_NIPA: Magnes 59.0 6.9 0.00015 36.4 2.3 61 130-197 59-119 (300)
58 KOG4510 Permease of the drug/m 58.3 52 0.0011 31.1 7.8 71 124-201 256-326 (346)
59 PF06800 Sugar_transport: Suga 48.9 1.6E+02 0.0035 27.3 9.5 57 120-177 195-251 (269)
60 PF03616 Glt_symporter: Sodium 45.9 2.8E+02 0.0061 26.6 13.7 98 61-177 236-339 (368)
61 COG5006 rhtA Threonine/homoser 40.9 15 0.00032 34.2 1.4 48 136-183 225-272 (292)
62 KOG4510 Permease of the drug/m 40.8 2.9 6.4E-05 39.2 -3.2 47 130-176 106-152 (346)
63 COG2510 Predicted membrane pro 29.3 3.5E+02 0.0076 22.8 7.8 48 128-175 12-59 (140)
64 PF04142 Nuc_sug_transp: Nucle 29.1 4.2E+02 0.0092 23.7 13.5 130 42-182 113-242 (244)
65 PLN03160 uncharacterized prote 27.6 84 0.0018 27.9 3.9 24 1-24 1-24 (219)
66 COG2962 RarD Predicted permeas 25.8 35 0.00076 32.1 1.2 68 156-232 107-190 (293)
67 TIGR00803 nst UDP-galactose tr 21.0 2.7E+02 0.0058 23.9 5.8 48 136-183 167-214 (222)
68 KOG4314 Predicted carbohydrate 20.7 4.3 9.4E-05 36.6 -5.5 64 120-183 52-115 (290)
69 KOG2766 Predicted membrane pro 20.6 1E+02 0.0022 29.1 3.1 64 120-183 77-140 (336)
No 1
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-25 Score=206.88 Aligned_cols=141 Identities=27% Similarity=0.414 Sum_probs=130.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhh
Q 025414 41 TRRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKT 120 (253)
Q Consensus 41 ~~~~i~aal~Y~~sSvsli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 120 (253)
..+.+.++++||++|+.|+++||+++++|+||...++.+.|.+++++.+.+++++|.++++++| +++
T Consensus 10 ~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~-------------~~~ 76 (314)
T KOG1444|consen 10 QSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLD-------------LRT 76 (314)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcC-------------hHH
Confidence 3455789999999999999999999999999988888889999999999999999999997765 478
Q ss_pred hhhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHHH
Q 025414 121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVALI 200 (253)
Q Consensus 121 ~k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~~ 200 (253)
.|+|+|++++|.+|+++|+.+++++|||||+++||++|++|+++|.+++|++++.++++|+.. |.+|+.++++
T Consensus 77 ~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~-------m~~~s~~~~~ 149 (314)
T KOG1444|consen 77 AKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFA-------MIIGSVAAAF 149 (314)
T ss_pred HHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHH-------HHHHHHhhcc
Confidence 899999999999999999999999999999999999999999999999999999999999999 6666666664
Q ss_pred H
Q 025414 201 A 201 (253)
Q Consensus 201 ~ 201 (253)
+
T Consensus 150 ~ 150 (314)
T KOG1444|consen 150 T 150 (314)
T ss_pred c
Confidence 3
No 2
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.88 E-value=3e-23 Score=192.75 Aligned_cols=168 Identities=21% Similarity=0.326 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHH
Q 025414 46 NAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTL 125 (253)
Q Consensus 46 ~aal~Y~~sSvsli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~il 125 (253)
....+|.++|+..++.||++++.|+||||.+++.+|..++.+...+.+.+|..+.++.++ ...++.++
T Consensus 20 ~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~------------~~~~~~ll 87 (316)
T KOG1441|consen 20 IAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISS------------KLPLRTLL 87 (316)
T ss_pred HHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcccc------------ccchHHHH
Confidence 356677788999999999999999999999999999999999999999999888766433 24579999
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHHHH----
Q 025414 126 PLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVALIA---- 201 (253)
Q Consensus 126 Pls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~~~---- 201 (253)
|+++++.+++++||.|+++++|+|+|++|+++|++++++++++.+|++++++++++.+ ++.|+++|+.+
T Consensus 88 pl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~p-------iv~GV~ias~~e~~f 160 (316)
T KOG1441|consen 88 PLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLP-------IVFGVAIASVTELSF 160 (316)
T ss_pred HHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEE-------eeeeEEEeeeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999 88888888876
Q ss_pred --HHHhhhHhh--------------------hcchhhhhhhhhhhhhcCCccceeec-cc
Q 025414 202 --LALCGAMVL--------------------YVDRFCCFGHFFEVTWRQPSTFHTCF-PL 238 (253)
Q Consensus 202 --~~~~~a~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 238 (253)
+++++||.+ ++|..+++ .| .+|.++...+ |.
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll--~y----~ap~s~~~Ll~P~ 214 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLL--YY----TAPISLIFLLIPF 214 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHH--HH----hhhHHHHHHhcch
Confidence 566777764 47888887 33 3677777776 53
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.77 E-value=4.5e-18 Score=159.32 Aligned_cols=138 Identities=20% Similarity=0.092 Sum_probs=117.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhh
Q 025414 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL 121 (253)
Q Consensus 42 ~~~i~aal~Y~~sSvsli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 121 (253)
-+....++.|..+|+..++.||++++.+ |+|.+++.+|++++++++.+++.+|..+.++++. .++.+
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~--~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~ 114 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNML--PLPWTISSLQLFVGWLFALLYWATGFRKIPRIKS-----------LKLFL 114 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-----------HHHHH
Confidence 3444566666677899999999999985 7899999999999998888887777554443321 13467
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHH
Q 025414 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVAL 199 (253)
Q Consensus 122 k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~ 199 (253)
|+++|+++++.......+.|+++.+++++|++|+++|+++++++++++|||++++.++++.+ ++.|++++.
T Consensus 115 ~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l-------~v~Gv~l~~ 185 (350)
T PTZ00343 115 KNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIP-------IVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHH-------HHHHHHhee
Confidence 99999999999888888999999999999999999999999999999999999999999999 888888775
No 4
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.70 E-value=9.9e-17 Score=145.84 Aligned_cols=133 Identities=18% Similarity=0.163 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhH
Q 025414 45 ANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHT 124 (253)
Q Consensus 45 i~aal~Y~~sSvsli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~i 124 (253)
....+.|.+.|++++++||++++. |++|.+++++|++++.+.+.+.++.+..+.++. +++.+|++
T Consensus 4 ~~~~~~w~~~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 68 (302)
T TIGR00817 4 GLLFGLWYFLNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKI-------------SSALLKLL 68 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-------------CHHHHHHH
Confidence 445677788899999999999996 588999999999999888888765554333221 25678999
Q ss_pred HHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHH
Q 025414 125 LPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVAL 199 (253)
Q Consensus 125 lPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~ 199 (253)
+|+++++..+..+.|.++++.+++++|++|+++|+++++++++++|||++++.++++.+ ++.|+++++
T Consensus 69 ~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l-------~~~Gv~l~~ 136 (302)
T TIGR00817 69 LPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLP-------IVGGVALAS 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHH-------HHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999988 677766543
No 5
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.66 E-value=1.1e-16 Score=142.40 Aligned_cols=133 Identities=21% Similarity=0.292 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhH
Q 025414 45 ANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHT 124 (253)
Q Consensus 45 i~aal~Y~~sSvsli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~i 124 (253)
..+.+.|+.+|+.+++.||++++..+|+--..+.+.|-+++.+.+.++|..|.+++. ..++|+|
T Consensus 8 ~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR----------------~t~aK~W 71 (309)
T COG5070 8 LTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR----------------LTKAKKW 71 (309)
T ss_pred chHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee----------------hhhhhhh
Confidence 558899999999999999999999999998899999999999999999999998872 2467999
Q ss_pred HHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHHH
Q 025414 125 LPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVALI 200 (253)
Q Consensus 125 lPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~~ 200 (253)
+|.+++-+.+++.+-+||+|++||.|+++|+++++.++.+|.+++|++.+.....|.++ |+...++|.-
T Consensus 72 fpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFil-------MvlSS~va~w 140 (309)
T COG5070 72 FPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFIL-------MVLSSVVATW 140 (309)
T ss_pred cCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHH-------HHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999 7777776653
No 6
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=4.1e-17 Score=148.57 Aligned_cols=129 Identities=26% Similarity=0.313 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc--CCCCchHHHHHHHHHHHHHHHHHHHHc-----CcccccCCCCCccCCCCCccc
Q 025414 44 GANAAISYMACAVLLVMFNKAALSS--YNFPCANVITLLQMISSCSFLYFLRRW-----KIINFTMGDSLMTSDSSSTFV 116 (253)
Q Consensus 44 ~i~aal~Y~~sSvsli~lNK~lLs~--~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~-----g~i~~~~~~~~~~~~~~~~~~ 116 (253)
...++..|..+|+.++|.||++++. -..+-|.+.+..|++++..+|.++.++ +..++|.++ +
T Consensus 29 v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~-----------l 97 (347)
T KOG1442|consen 29 VDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQ-----------L 97 (347)
T ss_pred hhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCccc-----------c
Confidence 3457788899999999999999997 567889999999999999999887543 455566544 2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 117 PLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 117 ~~~~~k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
+.+..|+++|++++|.+++.++|.||+|++|+||++-|.++.+|++++.|+++||+.+.....++++
T Consensus 98 dl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~l 164 (347)
T KOG1442|consen 98 DLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLL 164 (347)
T ss_pred cHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehh
Confidence 3688999999999999999999999999999999999999999999999999999999999988877
No 7
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.34 E-value=4.5e-12 Score=116.07 Aligned_cols=132 Identities=16% Similarity=0.203 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHHH
Q 025414 47 AAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLP 126 (253)
Q Consensus 47 aal~Y~~sSvsli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilP 126 (253)
++..|+.+....++.+|-.-..++.++|.++++.|++++.+...+...... .++.+ ...++++++
T Consensus 5 ~~~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~--~~~~~-------------~~~~~~~~~ 69 (303)
T PF08449_consen 5 VAGIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK--FPKSR-------------KIPLKKYAI 69 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--ccCCC-------------cChHHHHHH
Confidence 455666555555555554444555569999999999998888776543332 11101 234689999
Q ss_pred HHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHHH
Q 025414 127 LAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVALI 200 (253)
Q Consensus 127 ls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~~ 200 (253)
+++++.++.+++|.|++++|+|+++++|++.++.+++++++++|||++++.++++++ ++.|++++++
T Consensus 70 ~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~l-------i~~Gv~~~~~ 136 (303)
T PF08449_consen 70 LSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLL-------ITIGVAIFTL 136 (303)
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHH-------HHhhHheeee
Confidence 999999999999999999999999999999999999999999999999999999999 7777776554
No 8
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.99 E-value=1.7e-10 Score=106.80 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchh-hhhhhHH
Q 025414 47 AAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPL-KTLMHTL 125 (253)
Q Consensus 47 aal~Y~~sSvsli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~-~~~k~il 125 (253)
-++.|..+|+++.+.||+.=.+ |++|.+++.+|+++-.++....++.---+.++. +....| +..|+..
T Consensus 20 lVl~yY~~Si~Ltf~~~~~~~~--f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~---------r~~~sw~~~Lr~~a 88 (349)
T KOG1443|consen 20 LVLLYYFLSIGLTFYFKWLTKN--FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRA---------RVVLSWRDYLRRLA 88 (349)
T ss_pred HHHHHHHHHHHHHHHhhhhhcC--cCCchHHHHHHHHHHHHHHHHHHHHHhccCCcc---------ccCCcHHHHHHHhh
Confidence 4477888999999999997665 577889999999998888777654432222110 011223 5789999
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 126 PLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 126 Pls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
|.+++-.+.+.++|.|++|+++++|+|.|+.+++|+++.+..+.-|++++.-.+.+++
T Consensus 89 Ptalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~l 146 (349)
T KOG1443|consen 89 PTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLL 146 (349)
T ss_pred hhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887766665
No 9
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.00 E-value=1.9e-05 Score=60.91 Aligned_cols=118 Identities=13% Similarity=0.127 Sum_probs=87.2
Q ss_pred HHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHHHHHHH-HHHHHH
Q 025414 58 LVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVA-YLLYMV 136 (253)
Q Consensus 58 li~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilPls~~-f~~~i~ 136 (253)
...++|...+++ + |...+.+++..+.+........+..+.... +.+.....+..+.+ ......
T Consensus 6 ~~~~~k~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 69 (126)
T PF00892_consen 6 YSVFSKKLLKKI--S-PLSITFWRFLIAGILLILLLILGRKPFKNL-------------SPRQWLWLLFLGLLGTALAYL 69 (126)
T ss_pred HHHHHHHHhccC--C-HHHHHHHHHHHHHHHHHHHHhhccccccCC-------------ChhhhhhhhHhhccceehHHH
Confidence 467888888874 4 567888888887752222222221111111 12445566777766 588888
Q ss_pred HhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHH
Q 025414 137 VSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVA 198 (253)
Q Consensus 137 ~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA 198 (253)
+-+.++++.+++...++..+.|+++++++++++||+++++.++++.+ ++.|.++.
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l-------~~~g~~l~ 124 (126)
T PF00892_consen 70 LYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIIL-------IIIGVVLI 124 (126)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------HHHHHHHH
Confidence 89999999999999999999999999999999999999999888888 77777664
No 10
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.82 E-value=8.4e-06 Score=74.00 Aligned_cols=107 Identities=18% Similarity=0.106 Sum_probs=89.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHHHHHHHHHHHHHHhhhhccccchhHH
Q 025414 71 FPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMY 150 (253)
Q Consensus 71 Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilPls~~f~~~i~~gn~SL~~lsVpfy 150 (253)
|.|...|.++|+.++.++..++-... +-.+.|+ .-.+.....++.|.+.++.+|.+++++|-|.-
T Consensus 50 FTfalaLVf~qC~~N~vfAkvl~~ir--~~~~~D~-------------t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTq 114 (337)
T KOG1580|consen 50 FTFALALVFFQCTANTVFAKVLFLIR--KKTEIDN-------------TPTKMYAACSASYLLAMVSSNQALQYVPYPTQ 114 (337)
T ss_pred ehHHHHHHHHHHHHHHHHHHhheeec--ccccccC-------------CcchHHHHHHHHHHHHHHhccchhcccCCcHH
Confidence 88999999999999999887752221 1112222 11256778899999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHH
Q 025414 151 TTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVAL 199 (253)
Q Consensus 151 qvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~ 199 (253)
.+-|++-|+=++++..++.+|+.+++.++.++. |+.|+++=-
T Consensus 115 VlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~-------IV~GValFm 156 (337)
T KOG1580|consen 115 VLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLM-------IVVGVALFM 156 (337)
T ss_pred HhcccCCCcceeeeehhhhcccccHHHHHHHHH-------HHHHHHHhh
Confidence 999999999999999999999999999999999 998887643
No 11
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.45 E-value=0.00089 Score=63.33 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=57.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 120 ~~k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
.+++.+-++++-+...++.+.|++|-|+.-.|+++..+++++++++++++++|+++.-++++++
T Consensus 78 ~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i 141 (334)
T PF06027_consen 78 PWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLI 141 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3466777899999999999999999999999999999999999999999999999887766555
No 12
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.26 E-value=0.0014 Score=57.62 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=79.4
Q ss_pred HHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHHHHHH-HHHHHHHH
Q 025414 59 VMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAV-AYLLYMVV 137 (253)
Q Consensus 59 i~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilPls~-~f~~~i~~ 137 (253)
-...|+.+++. .-+..+.+.+++++.+++......+ + + .++.++.+..+. .+.++..+
T Consensus 5 ~~~~k~~~~~~--~~~~~~~~~r~~~~~l~l~~~~~~~----~--~-------------~~~~~~~~~~~~~~~~l~~~~ 63 (260)
T TIGR00950 5 GVVIGQYLEGQ--VPLYFAVFRRLIFALLLLLPLLRRR----P--P-------------LKRLLRLLLLGALQIGVFYVL 63 (260)
T ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHhc----c--C-------------HhHHHHHHHHHHHHHHHHHHH
Confidence 35678888764 4567888999998877776543333 1 1 123345555554 45677778
Q ss_pred hhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 138 SVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 138 gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
-..|+++.+.+.-.++..+.|+++.+++.+++|||++++.+.++.+
T Consensus 64 ~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i 109 (260)
T TIGR00950 64 YFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVL 109 (260)
T ss_pred HHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence 8899999999999999999999999999999999999998877766
No 13
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.12 E-value=0.00046 Score=62.30 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=57.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 120 ~~k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
...+...-+++|...-.+...++++++.+.||+++.+-+++|+++.++++||+.+++-|+++.+
T Consensus 16 ~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~l 79 (244)
T PF04142_consen 16 DTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFL 79 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHH
Confidence 3344555588899999999999999999999999999999999999999999999999998887
No 14
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.0044 Score=58.04 Aligned_cols=122 Identities=14% Similarity=0.195 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc------C-----CCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCcc
Q 025414 47 AAISYMACAVLLVMFNKAALSS------Y-----NFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTF 115 (253)
Q Consensus 47 aal~Y~~sSvsli~lNK~lLs~------~-----~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~ 115 (253)
.-++++++.+-..++---++++ | +|..+.++.++|-+.+.++-+.+-.....+. +.
T Consensus 13 ~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~---~~---------- 79 (327)
T KOG1581|consen 13 ILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKEL---SG---------- 79 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccC---CC----------
Confidence 3445556666666666566653 3 6888999999999998888766532221111 11
Q ss_pred chhhhhhhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 116 VPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 116 ~~~~~~k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
.+-+++..-.++....+-+++..||+|+|-|.....|++=.+-++++..++.|+|.+..-+++..+
T Consensus 80 --~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~L 145 (327)
T KOG1581|consen 80 --VAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFL 145 (327)
T ss_pred --CCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHH
Confidence 123467777899999999999999999999999999999999999999999999999888876665
No 15
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=96.92 E-value=8e-05 Score=68.85 Aligned_cols=129 Identities=13% Similarity=0.181 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHHH
Q 025414 47 AAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLP 126 (253)
Q Consensus 47 aal~Y~~sSvsli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilP 126 (253)
+.++-+.||-..-+ ..+.+..+ ..-+.+|+.|+++... -|.+...++.... -.+|. |.+.-
T Consensus 9 ~~vf~GCcsnvv~l--E~L~~~~p-gsgNLITFaqFlFia~-------eGlif~skf~~~k------~kipl---k~Y~i 69 (330)
T KOG1583|consen 9 SLVFGGCCSNVVFL--ELLVRNEP-GSGNLITFAQFLFIAT-------EGLIFTSKFFTVK------PKIPL---KDYAI 69 (330)
T ss_pred HHHHHhhhchHHHH--HHHHHhCC-CCeeehHHHHHHHHHH-------hceeeeccccccC------CCCch---hhhhe
Confidence 44455666665443 22344331 3568899999986432 2344333332210 00233 66666
Q ss_pred HHHHHHHHHHHhhhhccc-cchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHHHH
Q 025414 127 LAVAYLLYMVVSVESVRG-VNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVALIA 201 (253)
Q Consensus 127 ls~~f~~~i~~gn~SL~~-lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~~~ 201 (253)
+...|.+.-+++|.++++ +++|...++|.-+++.++++.+++.||++|.+-+.|+.. ++.|.+++.++
T Consensus 70 ~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~-------iTiGiiIcTl~ 138 (330)
T KOG1583|consen 70 TVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLM-------ITIGIIICTLF 138 (330)
T ss_pred ehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHh-------hhhhheeEEee
Confidence 667777777889999985 699999999999999999999999999999999999999 88888888754
No 16
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=96.84 E-value=0.013 Score=52.05 Aligned_cols=128 Identities=9% Similarity=-0.010 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHH-HHHcCcccc--cCCCCCccCCCCCccchhhhhh
Q 025414 46 NAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYF-LRRWKIINF--TMGDSLMTSDSSSTFVPLKTLM 122 (253)
Q Consensus 46 ~aal~Y~~sSvsli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~v-l~~~g~i~~--~~~~~~~~~~~~~~~~~~~~~k 122 (253)
.+++.|+.. -.+-|. +.+ .+ |..+.++.++.+.+.+.. ....+..+. ++.++.+ ..+...
T Consensus 9 ~a~~~wg~~----~~~~k~-~~~--~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 71 (256)
T TIGR00688 9 LASFLFGYM----YYYSKL-LKP--LP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQ---------KRPLIL 71 (256)
T ss_pred HHHHHHHHH----HHHHHH-hcc--CC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcc---------cchHHH
Confidence 344455443 334565 333 23 678999999887655433 222221100 0000000 001112
Q ss_pred hHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHH
Q 025414 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLV 197 (253)
Q Consensus 123 ~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vv 197 (253)
...-.+++..++..+-..++++.++..-.++-.++|+++++++++++|||++++.++++.+ ...|+++
T Consensus 72 ~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~-------~~~Gv~l 139 (256)
T TIGR00688 72 SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVII-------ATLGVIS 139 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-------HHHHHHH
Confidence 2334455567788888999999999999999999999999999999999999999999988 7777664
No 17
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.77 E-value=0.015 Score=52.98 Aligned_cols=115 Identities=12% Similarity=0.039 Sum_probs=77.9
Q ss_pred HHhhhcCCCCchHHHHHHHHHHHHHHHHHH-HHcCcccccCCCCCccCCCCCccchhhhhhhHHHHHHHHHHHHHHhhhh
Q 025414 63 KAALSSYNFPCANVITLLQMISSCSFLYFL-RRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVES 141 (253)
Q Consensus 63 K~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilPls~~f~~~i~~gn~S 141 (253)
|.+ .. .+ |..+.+++++++.+++... ...+- .+...+ . +.+++......--++.+..+..+-..+
T Consensus 28 k~~-~~--~~-~~~~~~~R~~~a~~~l~~~~~~~~~--~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a 93 (296)
T PRK15430 28 KLI-YY--VP-ADEILTHRVIWSFFFMVVLMSICRQ--WSYLKT-L-------IQTPQKIFMLAVSAVLIGGNWLLFIWA 93 (296)
T ss_pred HHh-cC--CC-HHHHHHHHHHHHHHHHHHHHHHHcc--HHHHHH-H-------HcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764 33 35 7889999999876644332 21110 000000 0 000111111222234556677888899
Q ss_pred ccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHH
Q 025414 142 VRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVA 198 (253)
Q Consensus 142 L~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA 198 (253)
+++.++..-.++-.++|+++++++++++|||++++.++++.+ ...|+++.
T Consensus 94 ~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l-------~~~Gv~li 143 (296)
T PRK15430 94 VNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVIL-------AICGVLVQ 143 (296)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH-------HHHHHHHH
Confidence 999999999999999999999999999999999999999998 77787754
No 18
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=96.54 E-value=0.033 Score=48.83 Aligned_cols=112 Identities=10% Similarity=-0.020 Sum_probs=72.9
Q ss_pred HHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHHHHHHHH-HHHH
Q 025414 57 LLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAY-LLYM 135 (253)
Q Consensus 57 sli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilPls~~f-~~~i 135 (253)
...+.+|...++++-+ +..+..+++.++.+++...-...- +.... +.+.+...+-++++. ....
T Consensus 142 ~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 142 LGTVLYKRLVKKEGPE-LLQFTGWVLLLGALLLLPFAWFLG-PNPQA-------------LSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHhHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHhcC-CCCCc-------------chHHHHHHHHHHHHHHHHHH
Confidence 3456678877665322 334444677777666654322110 00000 112223334344432 4555
Q ss_pred HHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 136 VVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 136 ~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
.+-+.++++.+.....++..+.|++.++++++++||+++...+....+
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~l 254 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGAL 254 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 666789999999999999999999999999999999999998777776
No 19
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.35 E-value=0.0057 Score=48.20 Aligned_cols=68 Identities=4% Similarity=0.033 Sum_probs=56.6
Q ss_pred HHHHHHHHH-HHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHH
Q 025414 124 TLPLAVAYL-LYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVAL 199 (253)
Q Consensus 124 ilPls~~f~-~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~ 199 (253)
+...+.+.. .+..+-..++++.+ +...++..+.|+++.++..+++||+.+++.++++.+ +..|+++-+
T Consensus 37 ~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l-------~~~Gv~li~ 105 (113)
T PF13536_consen 37 LILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILL-------ILIGVILIA 105 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHHHHHh
Confidence 344455443 67777889999999 688899999999999999999999999999888888 777776644
No 20
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=95.90 E-value=0.09 Score=47.47 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHH
Q 025414 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLV 197 (253)
Q Consensus 124 ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vv 197 (253)
.+--+........+-..++++.+++.-..+-.+.|+++.+++++++||+++++.++.+.+ +..|+++
T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~-------~~~Gv~l 132 (281)
T TIGR03340 66 LAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILI-------ITLGLLV 132 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHH-------HHHHHHH
Confidence 343444556677777889999999999999999999999999999999999999998888 6666654
No 21
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.88 E-value=0.021 Score=53.22 Aligned_cols=113 Identities=16% Similarity=0.174 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhhhcCCCC-chHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHHHHHHHHHH
Q 025414 55 AVLLVMFNKAALSSYNFP-CANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLL 133 (253)
Q Consensus 55 Svsli~lNK~lLs~~~Fp-~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilPls~~f~~ 133 (253)
-+.--.+-.++++.-+|+ |--.+|+.|+.+=. -+|.++..-++. .+ .-.|| |...-++++-++
T Consensus 55 Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ys-------g~glie~~~~~~-----k~-r~iP~---rtY~~la~~t~g 118 (367)
T KOG1582|consen 55 YLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYS-------GFGLIELQLIQT-----KR-RVIPW---RTYVILAFLTVG 118 (367)
T ss_pred HHHHHHHHHHHhccccCcccchHHHHHHHHHHH-------hhhheEEEeecc-----cc-eecch---hHhhhhHhhhhh
Confidence 444455667788888887 77789999998532 233444322211 00 01255 777888999999
Q ss_pred HHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 134 YMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 134 ~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
.+.++|.|+.|+|-|.-.++|.+--+=+++++.++.|+|...--+.|-..
T Consensus 119 tmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~l 168 (367)
T KOG1582|consen 119 TMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAML 168 (367)
T ss_pred ccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999987665555444
No 22
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=95.64 E-value=0.13 Score=48.94 Aligned_cols=117 Identities=12% Similarity=0.029 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHH-HHcC-cccccCCCCCccCCCCCccchhhhhhhHHHHHH
Q 025414 52 MACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFL-RRWK-IINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAV 129 (253)
Q Consensus 52 ~~sSvsli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl-~~~g-~i~~~~~~~~~~~~~~~~~~~~~~~k~ilPls~ 129 (253)
-++..++..+-|..++.- .+ |..+.++=+..+.+++... ...+ ..+.+ + .+++.+.+..-+++
T Consensus 22 q~~~~~~~~~~k~a~~~G-~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~---~----------~~~~~~~~l~l~g~ 86 (358)
T PLN00411 22 ETSVVGISTLFKVATSKG-LN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLP---P----------LSVSILSKIGLLGF 86 (358)
T ss_pred HHHHHHHHHHHHHHHHCC-CC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccC---c----------chHHHHHHHHHHHH
Confidence 366778889999988642 23 3346677776665555332 2111 01111 1 01334455555555
Q ss_pred HHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHH------hCcccCcceEEEEee
Q 025414 130 AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFL------AGQKYTPPVVGSQHH 183 (253)
Q Consensus 130 ~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~ll------lgk~~S~~v~lSl~v 183 (253)
+......+-+.++++.+.+.-.++=.++|++++++.+++ ++||.+++.++.+.+
T Consensus 87 ~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l 146 (358)
T PLN00411 87 LGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTIL 146 (358)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHH
Confidence 443344467889999999999999999999999999999 599999988877666
No 23
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=95.52 E-value=0.24 Score=43.17 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHH-HHhCcccCcceEEEEee
Q 025414 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEY-FLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 123 ~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~-lllgk~~S~~v~lSl~v 183 (253)
..+.-.+.+.....+-..++++.+++..+++..+.|+++.++.+ +++||+++++.++++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~ 133 (292)
T COG0697 72 LLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILL 133 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence 44444555666667777889999999999999999999999997 77799999999887666
No 24
>PRK11689 aromatic amino acid exporter; Provisional
Probab=95.37 E-value=0.16 Score=46.21 Aligned_cols=113 Identities=12% Similarity=0.008 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHH
Q 025414 46 NAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTL 125 (253)
Q Consensus 46 ~aal~Y~~sSvsli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~il 125 (253)
.+++.|+. .....|..++.+ | |..+..+-+..+.+++.... +.++.++ +..+..+
T Consensus 11 ~a~~~Wg~----~~~~~k~~~~~~--~-P~~~~~~R~~~a~l~l~~~~-----~~~~~~~-------------~~~~~~~ 65 (295)
T PRK11689 11 IAILLWST----MVGLIRGVSESL--G-PVGGAAMIYSVSGLLLLLTV-----GFPRLRQ-------------FPKRYLL 65 (295)
T ss_pred HHHHHHHH----HHHHHHHHHccC--C-hHHHHHHHHHHHHHHHHHHc-----ccccccc-------------ccHHHHH
Confidence 34455543 356789888765 3 66788888877766655432 1111111 1112333
Q ss_pred HHHHHHHHHHHHhhhhcc----ccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 126 PLAVAYLLYMVVSVESVR----GVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 126 Pls~~f~~~i~~gn~SL~----~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
.-++.+.+...+-..+++ +.+...-.++-.++|++++++.++++|||++++.++.+.+
T Consensus 66 ~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l 127 (295)
T PRK11689 66 AGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLL 127 (295)
T ss_pred HHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 333434444444444443 4455556778889999999999999999999988765544
No 25
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=95.34 E-value=0.2 Score=45.65 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=64.2
Q ss_pred HHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHHHHHHHH-HHHHHHhh
Q 025414 61 FNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAY-LLYMVVSV 139 (253)
Q Consensus 61 lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilPls~~f-~~~i~~gn 139 (253)
.-|..++.. + |..+.++.+..+.+.+.... ..++ +..+..+..++.. .+...+-.
T Consensus 22 ~~k~~~~~~--~-p~~~~~~R~~~a~~~l~~~~-----~~~~----------------~~~~~~~~~g~~~~~~~~~~~~ 77 (299)
T PRK11453 22 VIKVGLHNM--P-PLMLAGLRFMLVAFPAIFFV-----ARPK----------------VPLNLLLGYGLTISFGQFAFLF 77 (299)
T ss_pred HHHHHHhcC--C-HHHHHHHHHHHHHHHHHHHh-----cCCC----------------CchHHHHHHHHHHHHHHHHHHH
Confidence 348777654 4 78888899877544433221 1111 0113344444432 22223334
Q ss_pred hhccc-cchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 140 ESVRG-VNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 140 ~SL~~-lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
.++++ ++.+.-.++-.+.|+++.+++++++|||++++.++++.+
T Consensus 78 ~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l 122 (299)
T PRK11453 78 CAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIAL 122 (299)
T ss_pred HHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHH
Confidence 56666 688888999999999999999999999999999877666
No 26
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=95.17 E-value=0.031 Score=44.55 Aligned_cols=65 Identities=11% Similarity=-0.002 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHHH
Q 025414 129 VAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVALI 200 (253)
Q Consensus 129 ~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~~ 200 (253)
+.|....++-..+++.+|++.-..+-.+.++.+.+..++++||+.+.+.++.+.+ ++.|+++-+.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~l-------ii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAF-------IIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------HHHHHHHHhc
Confidence 4467778888899999999999999999999999999999999999999999999 8888876543
No 27
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=94.85 E-value=0.44 Score=43.28 Aligned_cols=105 Identities=8% Similarity=0.020 Sum_probs=71.6
Q ss_pred HHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHH-HHcCcccccCCCCCccCCCCCccchhhhhhhHHHHHHHH-HHHHH
Q 025414 59 VMFNKAALSSYNFPCANVITLLQMISSCSFLYFL-RRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAY-LLYMV 136 (253)
Q Consensus 59 i~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilPls~~f-~~~i~ 136 (253)
-.+-|..+++. -|..++++.++++.+++... ...| .+. . +++..++....+.+. .....
T Consensus 24 ~~~~K~~~~~~---~p~~~~~~R~~~a~l~ll~~~~~~~-~~~---~------------~~~~~~~~~~~g~~~~~~~~~ 84 (292)
T PRK11272 24 YLVIRIGVESW---PPLMMAGVRFLIAGILLLAFLLLRG-HPL---P------------TLRQWLNAALIGLLLLAVGNG 84 (292)
T ss_pred HHHHHHHhccC---CHHHHHHHHHHHHHHHHHHHHHHhC-CCC---C------------cHHHHHHHHHHHHHHHHHHHH
Confidence 45567766643 37788999998876665443 2222 111 0 123445566666553 34444
Q ss_pred Hhhhhc-cccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 137 VSVESV-RGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 137 ~gn~SL-~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
+-..+. ++.+.+.-.++-.+.|+++.++.++ +|||++++.++++.+
T Consensus 85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~l 131 (292)
T PRK11272 85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAI 131 (292)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHH
Confidence 556666 8999999999999999999999986 699999999887766
No 28
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=94.80 E-value=0.62 Score=42.33 Aligned_cols=107 Identities=11% Similarity=0.047 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHHHHHHH-HHHHHHHhhhhccccchhHHHH
Q 025414 74 ANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVA-YLLYMVVSVESVRGVNVPMYTT 152 (253)
Q Consensus 74 P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilPls~~-f~~~i~~gn~SL~~lsVpfyqv 152 (253)
+...+.+|+.++...+....... ..+.... .+.+.+..++-++++ -.....+-+.++++.+.+...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~ 244 (292)
T PRK11272 177 GMMAGAAEMLAAGVVLLIASLLS--GERLTAL----------PTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATS 244 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHc--CCccccc----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 45677889888766654432111 0000000 012222333333332 2334456677889999999999
Q ss_pred HHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHH
Q 025414 153 LRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVAL 199 (253)
Q Consensus 153 lK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~ 199 (253)
+-.++|++.++.+++++||+++...++...+ +..|+++..
T Consensus 245 ~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~l-------Ii~gv~~~~ 284 (292)
T PRK11272 245 YAYVNPVVAVLLGTGLGGETLSPIEWLALGV-------IVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH-------HHHHHHHHH
Confidence 9999999999999999999999999888888 777776653
No 29
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=94.71 E-value=0.32 Score=39.25 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=54.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 119 ~~~k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
+....++..+++.....+.+...+++.|--.++++...-.+++.+++.+++|++.+...++.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l 143 (153)
T PF03151_consen 79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVL 143 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHH
Confidence 34556666677777888889999999999999999999999999999999999988776544444
No 30
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=94.66 E-value=0.59 Score=44.51 Aligned_cols=123 Identities=9% Similarity=0.130 Sum_probs=75.4
Q ss_pred HHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Q 025414 59 VMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVS 138 (253)
Q Consensus 59 i~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilPls~~f~~~i~~g 138 (253)
+++.|.+...| |.+..++++|+++..+.+.+.... .+..+..... . ..+... -.++-.++.-.+..++=
T Consensus 205 ~il~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~l~--~~~~~~~~~~----~--~~~~~~-~~i~y~~i~t~lay~lw 273 (358)
T PLN00411 205 FILQAHIMSEY--PAAFTVSFLYTVCVSIVTSMIGLV--VEKNNPSVWI----I--HFDITL-ITIVTMAIITSVYYVIH 273 (358)
T ss_pred HHHHHHHHHHc--CcHhHHHHHHHHHHHHHHHHHHHH--HccCCcccce----e--ccchHH-HHHHHHHHHHHHHHHHH
Confidence 34666666655 656677888888776655443221 1100000000 0 000111 11111222212233445
Q ss_pred hhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHH
Q 025414 139 VESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVAL 199 (253)
Q Consensus 139 n~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~ 199 (253)
+.++++++....-++-.+.|++.++++++++||.++...++...+ |..|+.++.
T Consensus 274 ~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~L-------Il~Gv~l~~ 327 (358)
T PLN00411 274 SWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGIL-------ITLGFYAVM 327 (358)
T ss_pred HHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHH-------HHHHHHHHH
Confidence 668999999999999999999999999999999999999887777 777766654
No 31
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=92.63 E-value=0.29 Score=44.12 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=50.6
Q ss_pred HHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHH
Q 025414 132 LLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLV 197 (253)
Q Consensus 132 ~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vv 197 (253)
.....+-+.++++.+.+....+..++|++.+++.++++||+++...++...+ +..|+++
T Consensus 222 ~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~l-------il~Gv~l 280 (281)
T TIGR03340 222 GGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCI-------IVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHH-------HHHhHHh
Confidence 4455566789999999999999999999999999999999999999888887 7777653
No 32
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=92.13 E-value=1.6 Score=39.63 Aligned_cols=94 Identities=14% Similarity=0.023 Sum_probs=66.5
Q ss_pred HHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHHHHHHHHHHHHHHhhh
Q 025414 61 FNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVE 140 (253)
Q Consensus 61 lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilPls~~f~~~i~~gn~ 140 (253)
..|+.+++. + |..+.++.++.+.+++....+.+..+. +++..+..+..++.+.....+-..
T Consensus 30 ~~K~~~~~~--~-~~~~~~~R~~~a~l~l~~~~~~~~~~~----------------~~~~~~~~~~~g~~~~~~~~~~~~ 90 (293)
T PRK10532 30 LAKSLFPLV--G-APGVTALRLALGTLILIAIFKPWRLRF----------------AKEQRLPLLFYGVSLGGMNYLFYL 90 (293)
T ss_pred HHHHHHHHc--C-HHHHHHHHHHHHHHHHHHHHhHHhccC----------------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999865 4 456899999988777655421111111 124456677777777777777788
Q ss_pred hccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcce
Q 025414 141 SVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPV 177 (253)
Q Consensus 141 SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v 177 (253)
++++.+.+...++-.+.|+++.+++. |+++...
T Consensus 91 al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~ 123 (293)
T PRK10532 91 SIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFV 123 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHH
Confidence 99999999999999999999998873 5555443
No 33
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=91.94 E-value=1.1 Score=42.86 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=60.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHH
Q 025414 119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVA 198 (253)
Q Consensus 119 ~~~k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA 198 (253)
+..|--.| +++|..+.-.--.++.+++-.+||+.-.+-++.|++...++++||.|++-|.|+.+ ...|+.+.
T Consensus 91 ~~lk~~vP-a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~l-------L~~Gv~~v 162 (345)
T KOG2234|consen 91 ETLKVSVP-ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVL-------LFAGVALV 162 (345)
T ss_pred HHHHHHHH-HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHH
Confidence 44454455 67788877666689999999999999999999999999999999999999999998 66666655
Q ss_pred H
Q 025414 199 L 199 (253)
Q Consensus 199 ~ 199 (253)
-
T Consensus 163 Q 163 (345)
T KOG2234|consen 163 Q 163 (345)
T ss_pred h
Confidence 4
No 34
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=91.82 E-value=0.5 Score=38.55 Aligned_cols=69 Identities=9% Similarity=0.087 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHhhhhccccchhHHHHH-HhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHH
Q 025414 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVA 198 (253)
Q Consensus 123 ~ilPls~~f~~~i~~gn~SL~~lsVpfyqvl-K~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA 198 (253)
...-.-+.|..+.++=..++++++++.-..+ ..+..+.+.+++++++||+.+...++.+.+ |+.|+++-
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~l-------Ii~GVi~l 101 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTT-------LVAGIVLI 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------HHHHHHHh
Confidence 3455667788888888899999999986655 679999999999999999999999999999 88887653
No 35
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=91.55 E-value=3.8 Score=35.63 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=58.6
Q ss_pred hhhhHHHHHHHHH-HHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHH
Q 025414 120 TLMHTLPLAVAYL-LYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVA 198 (253)
Q Consensus 120 ~~k~ilPls~~f~-~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA 198 (253)
.+....-.+++-. ....+-..+++..+.........+.|++.++.++++++|+++...++...+ ++.|+++.
T Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~l-------i~~g~~l~ 285 (292)
T COG0697 213 AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAAL-------VVLGVLLA 285 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH-------HHHHHHHH
Confidence 3455555555555 356667789999999999999999999999999999999999999888777 77777665
Q ss_pred H
Q 025414 199 L 199 (253)
Q Consensus 199 ~ 199 (253)
.
T Consensus 286 ~ 286 (292)
T COG0697 286 S 286 (292)
T ss_pred h
Confidence 4
No 36
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=90.83 E-value=0.92 Score=42.72 Aligned_cols=62 Identities=11% Similarity=0.069 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 122 k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
+..+|-+++=...-.+.+.+|.+-+-+-|||+|-..++||-+.+..+++++...+-|+++..
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~f 148 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILF 148 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHH
Confidence 45677778777888888899999999999999999999999999999999999999888776
No 37
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=90.75 E-value=4.8 Score=36.60 Aligned_cols=56 Identities=5% Similarity=-0.114 Sum_probs=45.6
Q ss_pred HhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHH
Q 025414 137 VSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVAL 199 (253)
Q Consensus 137 ~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~ 199 (253)
+-+.++++.+..-...+-.++|++..+..++++||+++...++...+ |+.|+.++.
T Consensus 231 l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~l-------I~~gv~l~~ 286 (299)
T PRK11453 231 IWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVL-------IMAGLYINV 286 (299)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHH-------HHHHHHHHh
Confidence 34456788888888888899999999999999999999999777777 666665543
No 38
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=90.43 E-value=1.2 Score=35.68 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhhhccccchhH-HHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHH
Q 025414 127 LAVAYLLYMVVSVESVRGVNVPM-YTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLV 197 (253)
Q Consensus 127 ls~~f~~~i~~gn~SL~~lsVpf-yqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vv 197 (253)
.-+.|..+.++-..++|++|++. |-+.-..-...+.+.+++++||+.+...++.+.. ++.|++.
T Consensus 41 ~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~l-------Ii~GVi~ 105 (109)
T PRK10650 41 SLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVL-------LLAGMVM 105 (109)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------HHHHHHH
Confidence 34556667778888999999997 5566678899999999999999999999999999 8888765
No 39
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=90.27 E-value=5.5 Score=36.17 Aligned_cols=58 Identities=9% Similarity=0.016 Sum_probs=48.5
Q ss_pred HHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHH
Q 025414 134 YMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVA 198 (253)
Q Consensus 134 ~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA 198 (253)
...+-+.++++.+......+-.++|++..+..++++||+++...++...+ |+.|.+..
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~l-------Il~~~~~~ 279 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGA-------IIAASMGS 279 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHH-------HHHHHHHH
Confidence 34455789999999999999999999999999999999999998766666 55555444
No 40
>PRK11431 multidrug efflux system protein; Provisional
Probab=90.15 E-value=1 Score=35.90 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhhhccccchhH-HHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHH
Q 025414 125 LPLAVAYLLYMVVSVESVRGVNVPM-YTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLV 197 (253)
Q Consensus 125 lPls~~f~~~i~~gn~SL~~lsVpf-yqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vv 197 (253)
+-.-+.|..+.++-..++|.+|++. |-+.-..-...+.+.+++++||+.+...++.+.. ++.|++.
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~l-------Ii~GVv~ 99 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLAL-------IVAGIIG 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------HHHHHHh
Confidence 3445677788888888999999997 5566669999999999999999999999999999 8888765
No 41
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=90.00 E-value=0.9 Score=36.39 Aligned_cols=64 Identities=9% Similarity=0.145 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhhhccccchhHHHHHH-hhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHH
Q 025414 127 LAVAYLLYMVVSVESVRGVNVPMYTTLR-RTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLV 197 (253)
Q Consensus 127 ls~~f~~~i~~gn~SL~~lsVpfyqvlK-~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vv 197 (253)
.-+.|.++.++=..+++++|++.-.... .+....+.+.+++++||+.+...++.+.+ |+.|++.
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~l-------Ii~GVi~ 100 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMML-------ICAGVLV 100 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------HHHHHHH
Confidence 4456677777778899999999977775 48899999999999999999999999999 8888765
No 42
>PRK11689 aromatic amino acid exporter; Provisional
Probab=89.84 E-value=4.7 Score=36.66 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=51.5
Q ss_pred HHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHH
Q 025414 132 LLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVA 198 (253)
Q Consensus 132 ~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA 198 (253)
....++=+.++++.+.....++=.++|++.++.+++++||+++...++...+ |..|+++.
T Consensus 226 ~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~l-------I~~gv~~~ 285 (295)
T PRK11689 226 GFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAM-------VTAGSLLC 285 (295)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHH-------HHHhHHHH
Confidence 3344555789999999999999999999999999999999999999888888 77776654
No 43
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=89.41 E-value=4.5 Score=37.04 Aligned_cols=68 Identities=12% Similarity=-0.009 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhhhcc-ccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceE----EEEeeecccccchhhHHHHHH
Q 025414 125 LPLAVAYLLYMVVSVESVR-GVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVV----GSQHHHSNISCNHSSHCLVAL 199 (253)
Q Consensus 125 lPls~~f~~~i~~gn~SL~-~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~----lSl~v~~~~~~~iv~G~vvA~ 199 (253)
+..++++.....+=..+++ ++.....-++-...|+...+..+++++|+.+++-+ +...+ ++.|+++-+
T Consensus 215 ~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~l-------Ii~~~~l~~ 287 (290)
T TIGR00776 215 ILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIIL-------IIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHH-------HHHHHHHHh
Confidence 3366665555555557788 99999999999999999999999999999999987 55555 555555443
No 44
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=89.34 E-value=5.6 Score=37.42 Aligned_cols=136 Identities=12% Similarity=0.032 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCchHHHHHHHHHHHHHHHHHHHH-cCccccc-CCCCCccCCCCCccc
Q 025414 44 GANAAISYMACAVLLVMFNKAALSSYN-----FPCANVITLLQMISSCSFLYFLRR-WKIINFT-MGDSLMTSDSSSTFV 116 (253)
Q Consensus 44 ~i~aal~Y~~sSvsli~lNK~lLs~~~-----Fp~P~~Lt~~Q~i~t~l~l~vl~~-~g~i~~~-~~~~~~~~~~~~~~~ 116 (253)
+...++.-.++.....+..|.++++++ .+ +..+..++++.+.+++..... ....+.. ..+... ..-. ..
T Consensus 195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~-~~~~--~~ 270 (350)
T PTZ00343 195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYT-ANMT--NY 270 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-hccc--cc
Confidence 444455555566667788888887653 23 233455556665554432211 1100000 000000 0000 00
Q ss_pred hh-hhhhhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 117 PL-KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 117 ~~-~~~k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
.. .....++.-++.|.+...++..++++++--.+.+.=.+-|++++++.++++|+..+..-++...+
T Consensus 271 ~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~l 338 (350)
T PTZ00343 271 TKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAV 338 (350)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHH
Confidence 00 11112333344455555555579999999999999999999999999999999999887666666
No 45
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=88.34 E-value=6.9 Score=35.60 Aligned_cols=54 Identities=4% Similarity=0.022 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 130 AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 130 ~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
.-.....+-+.++++.+-+.....-.+.|++.++..++++||+++...++....
T Consensus 222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~l 275 (296)
T PRK15430 222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAF 275 (296)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334556677899999999999999999999999999999999999998777666
No 46
>COG2510 Predicted membrane protein [Function unknown]
Probab=88.06 E-value=1.4 Score=36.80 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=72.4
Q ss_pred HHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHH-HHHcCccccc-CCCCCccCCCCCccchhhhhhhHHHHH-HHHHHH
Q 025414 58 LVMFNKAALSSYNFPCANVITLLQMISSCSFLYF-LRRWKIINFT-MGDSLMTSDSSSTFVPLKTLMHTLPLA-VAYLLY 134 (253)
Q Consensus 58 li~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~v-l~~~g~i~~~-~~~~~~~~~~~~~~~~~~~~k~ilPls-~~f~~~ 134 (253)
..++-|--+...+ |++=++.-.++...++.. .-..|-.+.+ .+++ |. ...+-+| +.-.++
T Consensus 18 ~~iF~KIGl~~vd---p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~-------------k~-~lflilSGla~gls 80 (140)
T COG2510 18 TPIFAKIGLEGVD---PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGP-------------KS-WLFLILSGLAGGLS 80 (140)
T ss_pred HHHHHHHhccccC---ccHHHHHHHHHHHHHHHHHHHhcCceecccccCc-------------ce-ehhhhHHHHHHHHH
Confidence 3677888887664 445555555554444433 2233422221 1111 11 1122222 223333
Q ss_pred HHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHH
Q 025414 135 MVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLV 197 (253)
Q Consensus 135 i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vv 197 (253)
-.+=..+++.-.+|-.--+-.+.+.++++++.+++||++|.+.++.+.+ |+.|+++
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~L-------I~~Gail 136 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVL-------IVIGAIL 136 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHH-------HHhCeee
Confidence 4444467777777777777789999999999999999999999999999 8888765
No 47
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=87.50 E-value=8.7 Score=35.10 Aligned_cols=140 Identities=9% Similarity=0.057 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhh
Q 025414 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH 123 (253)
Q Consensus 44 ~i~aal~Y~~sSvsli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ 123 (253)
++...+.+.++........|++++.++-+..-.+...++.........+..+..-+..+..++- ...| +....
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~------~~~p-~~~~~ 227 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFI------SAHP-SVLLY 227 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHH------HHhH-HHHHH
Confidence 5666777777777788899999999987653333333443333322222221100110000000 0001 23444
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHH
Q 025414 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLV 197 (253)
Q Consensus 124 ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vv 197 (253)
++-.++.-.....+-....+.-+=-...+...+--+++++++.++++++.++.-+.++++ +..|..+
T Consensus 228 l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~l-------v~~g~~~ 294 (303)
T PF08449_consen 228 LLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVL-------VFAGIFL 294 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHH-------hHHHHHH
Confidence 555555444444444444555555555555555678899999999999999998888888 6666554
No 48
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=86.14 E-value=1.7 Score=34.95 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhhhccccchhH-HHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHH
Q 025414 126 PLAVAYLLYMVVSVESVRGVNVPM-YTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLV 197 (253)
Q Consensus 126 Pls~~f~~~i~~gn~SL~~lsVpf-yqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vv 197 (253)
-.-+.+..+.++=-.++|++|++. |-+.--.-+..+.+.+++++||+.+...++.+.+ ++.|.+.
T Consensus 35 l~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~L-------iiaGvi~ 100 (106)
T COG2076 35 LTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLAL-------ILAGVIG 100 (106)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHH-------HHHHHHH
Confidence 344566777777788999999986 7778889999999999999999999999999988 7777653
No 49
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=85.12 E-value=5.9 Score=35.91 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=48.1
Q ss_pred HHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHH
Q 025414 136 VVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVAL 199 (253)
Q Consensus 136 ~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~ 199 (253)
...+.++++.+-..+.+.-.+.|+++++++++++||+.+...++...+ +..|..+..
T Consensus 236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~l-------il~Gv~l~~ 292 (302)
T TIGR00817 236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGI-------AIAGVFLYS 292 (302)
T ss_pred HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHH-------HHHHHHHHH
Confidence 445578999999999999999999999999999999999998777777 666665543
No 50
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=82.88 E-value=4.5 Score=38.45 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=36.9
Q ss_pred hccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHH
Q 025414 141 SVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLV 197 (253)
Q Consensus 141 SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vv 197 (253)
.++.-+--++.+-=.++.+..++.+.++.|+++++.-+++..+ |+.|.++
T Consensus 253 ~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~l-------IiiG~vv 302 (334)
T PF06027_consen 253 VLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFAL-------IIIGFVV 302 (334)
T ss_pred HHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHH-------HHHHhhe
Confidence 3444444445555577899999999999999999988888877 6666554
No 51
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=80.65 E-value=1.7 Score=35.63 Aligned_cols=64 Identities=9% Similarity=0.048 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHH--HhCcccCcceEEEEeeecccccchhhHHHHHH
Q 025414 129 VAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYF--LAGQKYTPPVVGSQHHHSNISCNHSSHCLVAL 199 (253)
Q Consensus 129 ~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~l--llgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~ 199 (253)
+.|.+..++=+.++++.+++.-.-+-...+..+.+..+. ++||+.+.+.++.+.+ |+.|+++..
T Consensus 56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~l-------Ii~GV~lv~ 121 (129)
T PRK02971 56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVAC-------IMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------HHHHHHHhc
Confidence 455667777788999999999888888888778777775 8999999999999999 888887643
No 52
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=79.28 E-value=0.57 Score=45.37 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=53.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 120 ~~k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
++|.-+-++.+....-++.|.||.+-+|...+++-+.+-+||..+..++.+++.+....+++.+
T Consensus 158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~ 221 (416)
T KOG2765|consen 158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFV 221 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 4455555566667778888999999999999999999999999999999999999877665544
No 53
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=75.82 E-value=0.92 Score=39.44 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=44.4
Q ss_pred ccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHHH
Q 025414 144 GVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVALI 200 (253)
Q Consensus 144 ~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~~ 200 (253)
.++||....+|...+..+++.++...+++.+...+++..+ ++.|++...+
T Consensus 1 ~isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l-------~~~g~l~~~l 50 (222)
T TIGR00803 1 KLSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTAL-------MTLGSLVASL 50 (222)
T ss_pred CccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHH-------HHHHHHHhHh
Confidence 3689999999999999999999999999999999999999 8888875444
No 54
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=73.93 E-value=17 Score=33.14 Aligned_cols=62 Identities=10% Similarity=0.046 Sum_probs=44.4
Q ss_pred hhHHHHHHH----HHHHHHHhhhhccccchhHHHHHHh-hHHHHHHHHHHHHhCcccCcce----EEEEee
Q 025414 122 MHTLPLAVA----YLLYMVVSVESVRGVNVPMYTTLRR-TTVAFTMIMEYFLAGQKYTPPV----VGSQHH 183 (253)
Q Consensus 122 k~ilPls~~----f~~~i~~gn~SL~~lsVpfyqvlK~-ltp~~tvvle~lllgk~~S~~v----~lSl~v 183 (253)
++.++.+++ +....++-..+.++++++.-..+=. +.+.+..+...+++||+.+++. ++++.+
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l 126 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALIL 126 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 455555555 4444466667888999888866666 6667888999999999998876 444444
No 55
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=70.64 E-value=8.1 Score=29.56 Aligned_cols=53 Identities=9% Similarity=0.076 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhccccchhHH-HHHHhhHHHHHHHHHHHHhCcccCcceEEEE
Q 025414 129 VAYLLYMVVSVESVRGVNVPMY-TTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQ 181 (253)
Q Consensus 129 ~~f~~~i~~gn~SL~~lsVpfy-qvlK~ltp~~tvvle~lllgk~~S~~v~lSl 181 (253)
..|..+.++=..++++++++.- -+...+..+.+.+.+.+++||+.|...++.+
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi 90 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGI 90 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhe
Confidence 3778888888899999999975 5567899999999999999999998765443
No 56
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=67.40 E-value=3.4 Score=33.48 Aligned_cols=69 Identities=6% Similarity=0.036 Sum_probs=50.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhccccchhHHHHH-HhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHH
Q 025414 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCL 196 (253)
Q Consensus 120 ~~k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvl-K~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~v 196 (253)
..|.++|+.+=-.+++++ ...+...+++.---+ -+++-++|++.++++.+|..+++.++.++. ++.|..
T Consensus 41 n~~y~ipf~lNq~GSv~f-~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~L-------i~~Gv~ 110 (113)
T PF10639_consen 41 NPKYIIPFLLNQSGSVLF-FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMAL-------ILAGVA 110 (113)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHH-------HHcCee
Confidence 346677877765666554 345666677666555 488899999999999999999998888888 666653
No 57
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=59.00 E-value=6.9 Score=36.41 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHH
Q 025414 130 AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLV 197 (253)
Q Consensus 130 ~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vv 197 (253)
.+..+-..+..|+.+.|.+..|-+-.+..++.+++..+++||+.+++-+..... ++.|+++
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l-------~i~G~~l 119 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCAL-------IILGSVL 119 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHH-------HHhhhee
Confidence 445666778899999999999999999999999999999999999998777777 5666544
No 58
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=58.29 E-value=52 Score=31.10 Aligned_cols=71 Identities=11% Similarity=-0.012 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHHHH
Q 025414 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVALIA 201 (253)
Q Consensus 124 ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~~~ 201 (253)
..-++++-.+...+-..++|.=--+=..+.|-.-.++-++-+.+++|+.|++..+...+. +++..+.+++-
T Consensus 256 ~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~-------vvsS~v~~a~~ 326 (346)
T KOG4510|consen 256 FVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVM-------VVSSTVWVALK 326 (346)
T ss_pred EEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceee-------eehhHHHHHHH
Confidence 333444444444444455544333333456777889999999999999999999998888 77777766654
No 59
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=48.95 E-value=1.6e+02 Score=27.29 Aligned_cols=57 Identities=16% Similarity=0.104 Sum_probs=45.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcce
Q 025414 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPV 177 (253)
Q Consensus 120 ~~k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v 177 (253)
.++.++ -++++.....+...|.+.+-+..--.+--+.++.--+...+++||+-++|-
T Consensus 195 ~~~nil-~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke 251 (269)
T PF06800_consen 195 SWKNIL-TGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE 251 (269)
T ss_pred hHHhhH-HHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh
Confidence 334444 477788777778888888888888888999999999999999999877664
No 60
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=45.87 E-value=2.8e+02 Score=26.58 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=47.6
Q ss_pred HHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhhhhHHHHHHHHHHHHHHhh-
Q 025414 61 FNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSV- 139 (253)
Q Consensus 61 lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~k~ilPls~~f~~~i~~gn- 139 (253)
+++++-. .++..|.++.. ++++.++-.+.++++..+. |+ +...++-=++.-+........
T Consensus 236 i~~~l~~-~~~~lP~f~~a--mi~g~ivrn~~~~~~~~~i---d~-------------~~i~~I~~~sL~~fl~~almsl 296 (368)
T PF03616_consen 236 ISALLKK-IGLTLPLFVGA--MIVGIIVRNILDKTGKYKI---DR-------------KTIDRISGISLDLFLAMALMSL 296 (368)
T ss_pred HHHHHHH-cCcCCchHHHH--HHHHHHHHHHHHHhCcccC---CH-------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 4444332 55566666553 6777777777777775442 22 344555444444333222221
Q ss_pred --hhccccchhHHHHHHhh---HHHHHHHHHHHHhCcccCcce
Q 025414 140 --ESVRGVNVPMYTTLRRT---TVAFTMIMEYFLAGQKYTPPV 177 (253)
Q Consensus 140 --~SL~~lsVpfyqvlK~l---tp~~tvvle~lllgk~~S~~v 177 (253)
..+..+.+|+..++=.- +.++.....+-++||.+...+
T Consensus 297 ~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkdydaav 339 (368)
T PF03616_consen 297 KLWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGKDYDAAV 339 (368)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCChhHHH
Confidence 23344455665433322 223333334445566665554
No 61
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=40.88 E-value=15 Score=34.25 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=44.4
Q ss_pred HHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 136 VVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 136 ~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
.+-+.++++++=+.|-++-++.|.+-.+...++++|++|..-++++..
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ 272 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAA 272 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 356789999999999999999999999999999999999999888777
No 62
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=40.81 E-value=2.9 Score=39.20 Aligned_cols=47 Identities=9% Similarity=0.091 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcc
Q 025414 130 AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPP 176 (253)
Q Consensus 130 ~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~ 176 (253)
.-...+...-+|++|++++=-.++--.+|.+|.+..+.++||+.+..
T Consensus 106 mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~ 152 (346)
T KOG4510|consen 106 MGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF 152 (346)
T ss_pred hhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH
Confidence 33444555668999999999999999999999999999999998843
No 63
>COG2510 Predicted membrane protein [Function unknown]
Probab=29.26 E-value=3.5e+02 Score=22.82 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCc
Q 025414 128 AVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTP 175 (253)
Q Consensus 128 s~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~ 175 (253)
++++.+.-+++-..++.++=.|-+..|.......+.+-.+..|+....
T Consensus 12 A~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~ 59 (140)
T COG2510 12 ALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAG 59 (140)
T ss_pred HHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecc
Confidence 445566678999999999999999999999999888888888886554
No 64
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=29.06 E-value=4.2e+02 Score=23.71 Aligned_cols=130 Identities=10% Similarity=0.003 Sum_probs=72.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCccCCCCCccchhhhh
Q 025414 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL 121 (253)
Q Consensus 42 ~~~i~aal~Y~~sSvsli~lNK~lLs~~~Fp~P~~Lt~~Q~i~t~l~l~vl~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 121 (253)
..++..++..+++|..-...+-+++...+ -+..+--.|+-.-.+.+.+.-.. ..+..+..+ ..-|.-+ ..
T Consensus 113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~-~~~~~~~~~------~g~f~G~-~~ 182 (244)
T PF04142_consen 113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALL-LSDGSAISE------SGFFHGY-SW 182 (244)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHh-ccccccccc------CCchhhc-ch
Confidence 45677778888777777888888888875 44566667765544444332211 011111010 0000001 11
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEe
Q 025414 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQH 182 (253)
Q Consensus 122 k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~ 182 (253)
..+.++..--.+.+.. ...+||.+-=.-...-.++++++.++++++++..+|....+...
T Consensus 183 ~~~~~i~~~a~gGllv-a~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 183 WVWIVIFLQAIGGLLV-AFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred HHHHHHHHHHHhhHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 2333333222233332 23466666555566668899999999999999999987655443
No 65
>PLN03160 uncharacterized protein; Provisional
Probab=27.61 E-value=84 Score=27.93 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=19.8
Q ss_pred CCCCCCCCCccccCCCCCCCcccc
Q 025414 1 MASNSSKSPMLPVSEPARGDEGEK 24 (253)
Q Consensus 1 ~~~~~~~~~~~p~~~~~~~~~~~~ 24 (253)
|+|+...+|+-|.+.-.+.+|||.
T Consensus 1 ~~~~~~~~p~a~~~~~~~~d~~~~ 24 (219)
T PLN03160 1 MAETEQVRPLAPAAFRLRSDEEEA 24 (219)
T ss_pred CCccccCCCCCCCcccccCchhhc
Confidence 889999999999888887666654
No 66
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=25.78 E-value=35 Score=32.08 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHHHH----------HHHhhhHh------hhcchhhhhh
Q 025414 156 TTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVALIA----------LALCGAMV------LYVDRFCCFG 219 (253)
Q Consensus 156 ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~~~----------~~~~~a~~------~~~~~~~~~~ 219 (253)
.-|++++++..+++|||.++.-+++++. -..|+.+=... +++--+.| +-+|--+=+
T Consensus 107 InPL~~VllG~lflkErls~~Q~iAV~l-------A~~GV~~~~~~~g~lpwval~la~sf~~Ygl~RK~~~v~a~~g~- 178 (293)
T COG2962 107 INPLVNVLLGRLFLKERLSRLQWIAVGL-------AAAGVLIQTWLLGSLPWVALALALSFGLYGLLRKKLKVDALTGL- 178 (293)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHH-------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCchHHhH-
Confidence 5799999999999999999999999999 88888775532 33333444 356655544
Q ss_pred hhhhhhhcCCccc
Q 025414 220 HFFEVTWRQPSTF 232 (253)
Q Consensus 220 ~~~~~~~~~~~~~ 232 (253)
.-|.+|=.|..+
T Consensus 179 -~lE~l~l~p~al 190 (293)
T COG2962 179 -TLETLLLLPVAL 190 (293)
T ss_pred -HHHHHHHhHHHH
Confidence 677777666554
No 67
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=21.04 E-value=2.7e+02 Score=23.87 Aligned_cols=48 Identities=8% Similarity=-0.018 Sum_probs=39.0
Q ss_pred HHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 136 VVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 136 ~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
.+-...+++.+--...+.-.+.++++.+++++++|+.++...+++..+
T Consensus 167 ~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~l 214 (222)
T TIGR00803 167 LCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAIL 214 (222)
T ss_pred ceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 334466777777788888999999999999999999999887665555
No 68
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=20.66 E-value=4.3 Score=36.63 Aligned_cols=64 Identities=9% Similarity=0.180 Sum_probs=55.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 120 ~~k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
..++..|.+++..+.-+.=..+|+.++-+-...+-.+--.|+.++.+..+|++.-.-.+++.+.
T Consensus 52 ~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaail 115 (290)
T KOG4314|consen 52 FFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAIL 115 (290)
T ss_pred eeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3577889999999999999999999999999999999999999999999999988666555544
No 69
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=20.57 E-value=1e+02 Score=29.11 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=49.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhccccchhHHHHHHhhHHHHHHHHHHHHhCcccCcceEEEEee
Q 025414 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSQHH 183 (253)
Q Consensus 120 ~~k~ilPls~~f~~~i~~gn~SL~~lsVpfyqvlK~ltp~~tvvle~lllgk~~S~~v~lSl~v 183 (253)
.+|+.+-++++=+-..++-..+.||-++--.+.+-.-.++.++++++++++.|.....+..+.+
T Consensus 77 ~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~i 140 (336)
T KOG2766|consen 77 KWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVI 140 (336)
T ss_pred HHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEe
Confidence 3456555555544444455578899999999999999999999999999999988777666555
Done!