Query 025414
Match_columns 253
No_of_seqs 119 out of 743
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 95.6 0.0074 2.5E-07 46.7 3.1 64 128-198 37-101 (110)
2 2i68_A Protein EMRE; transmemb 95.3 0.012 4.1E-07 47.7 3.6 66 128-200 37-103 (137)
3 3o7q_A L-fucose-proton symport 20.5 3.8E+02 0.013 22.9 8.3 14 59-72 279-293 (438)
4 2akh_X Protein-export membrane 8.9 4.1E+02 0.014 18.7 4.1 23 41-63 53-75 (77)
5 2l5b_A Activator of apoptosis 7.1 71 0.0024 19.1 -0.6 6 246-251 5-10 (32)
6 4b19_A PEPA1; toxin, toxin apo 6.8 2.3E+02 0.008 16.9 1.6 11 191-201 11-21 (30)
7 3tij_A NUPC family protein; me 6.0 6.8E+02 0.023 23.5 5.2 19 79-97 300-318 (424)
8 3arc_X Photosystem II PSBX pro 5.1 4.9E+02 0.017 16.4 2.5 7 208-214 29-35 (39)
9 1i8x_A Granulin-1; two beta-ha 4.8 2.4E+02 0.0082 16.7 0.8 12 236-247 19-30 (30)
10 3cxe_C Granulocyte-macrophage 4.2 2.4E+02 0.008 21.8 0.6 8 226-233 109-116 (120)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.55 E-value=0.0074 Score=46.74 Aligned_cols=64 Identities=8% Similarity=0.153 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhhhccccchhHHHHH-HhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHH
Q 025414 128 AVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVA 198 (253)
Q Consensus 128 s~~f~~~i~~gn~SL~~lsVpfyqvl-K~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA 198 (253)
.+.+.+..++-..++++.+++.-..+ +.+.|+++.++.++++||+.+...++.+.+ |+.|+++-
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~l-------Ii~Gv~~l 101 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMML-------ICAGVLII 101 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------HHHHHHHH
Confidence 34567777777889999999999888 999999999999999999999999999888 88887654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=95.30 E-value=0.012 Score=47.71 Aligned_cols=66 Identities=8% Similarity=0.147 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhhhccccchhHHHHH-HhhHHHHHHHHHHHHhCcccCcceEEEEeeecccccchhhHHHHHHH
Q 025414 128 AVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSQHHHSNISCNHSSHCLVALI 200 (253)
Q Consensus 128 s~~f~~~i~~gn~SL~~lsVpfyqvl-K~ltp~~tvvle~lllgk~~S~~v~lSl~v~~~~~~~iv~G~vvA~~ 200 (253)
.+.+.+..++-+.++++++++.-..+ +.+.|++++++.++++||+.+...++.+.+ |+.|+++...
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~L-------Ii~GV~ll~~ 103 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMML-------ICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------HHHHHHHHhc
Confidence 34577777888899999999977666 999999999999999999999999999999 8888876543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=20.51 E-value=3.8e+02 Score=22.85 Aligned_cols=14 Identities=0% Similarity=-0.159 Sum_probs=7.5
Q ss_pred HHHHHH-hhhcCCCC
Q 025414 59 VMFNKA-ALSSYNFP 72 (253)
Q Consensus 59 i~lNK~-lLs~~~Fp 72 (253)
.....+ +-+.++++
T Consensus 279 ~~~~~~~~~~~~g~~ 293 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMT 293 (438)
T ss_dssp HHHHHHHHHHSTTCC
T ss_pred HHHHHHhhhccCCcc
Confidence 455566 44445665
No 4
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=8.87 E-value=4.1e+02 Score=18.66 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 025414 41 TRRGANAAISYMACAVLLVMFNK 63 (253)
Q Consensus 41 ~~~~i~aal~Y~~sSvsli~lNK 63 (253)
.|.....+..|.+.++.+.+++|
T Consensus 53 ~k~T~~la~~F~v~sl~l~~~~~ 75 (77)
T 2akh_X 53 TRMTALLATLFFIISLVLGNINS 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445566667888888888776
No 5
>2l5b_A Activator of apoptosis harakiri; BCL-2, BH3-only, transmembrane domain; NMR {Synthetic}
Probab=7.13 E-value=71 Score=19.07 Aligned_cols=6 Identities=67% Similarity=2.173 Sum_probs=5.0
Q ss_pred cccccC
Q 025414 246 FPVYWP 251 (253)
Q Consensus 246 ~~~~~~ 251 (253)
.|.|||
T Consensus 5 lp~yw~ 10 (32)
T 2l5b_A 5 LPTYWP 10 (32)
T ss_dssp CCCCHH
T ss_pred cccchH
Confidence 688997
No 6
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=6.77 E-value=2.3e+02 Score=16.89 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=7.4
Q ss_pred hhhHHHHHHHH
Q 025414 191 HSSHCLVALIA 201 (253)
Q Consensus 191 iv~G~vvA~~~ 201 (253)
+++||++|-.+
T Consensus 11 visGcivalF~ 21 (30)
T 4b19_A 11 VISGCAIAFFS 21 (30)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777777554
No 7
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=5.99 E-value=6.8e+02 Score=23.50 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHcCc
Q 025414 79 LLQMISSCSFLYFLRRWKI 97 (253)
Q Consensus 79 ~~Q~i~t~l~l~vl~~~g~ 97 (253)
.+|.+++.++.-+.+..|+
T Consensus 300 Slq~IlGyif~P~A~lmGV 318 (424)
T 3tij_A 300 KLEMLLGWLFAPLAFLIGV 318 (424)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHhHHHHHHhCC
Confidence 4799999999999999994
No 8
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=5.09 E-value=4.9e+02 Score=16.36 Aligned_cols=7 Identities=14% Similarity=0.434 Sum_probs=4.3
Q ss_pred Hhhhcch
Q 025414 208 MVLYVDR 214 (253)
Q Consensus 208 ~~~~~~~ 214 (253)
-++|.|+
T Consensus 29 ~VSq~D~ 35 (39)
T 3arc_X 29 AISQIDK 35 (39)
T ss_dssp HHHHHSC
T ss_pred eEeccCc
Confidence 4567775
No 9
>1i8x_A Granulin-1; two beta-hairpin stack, cytokine; NMR {Synthetic} SCOP: g.3.16.1 PDB: 1qgm_A 1i8y_A
Probab=4.82 E-value=2.4e+02 Score=16.72 Aligned_cols=12 Identities=33% Similarity=0.991 Sum_probs=8.4
Q ss_pred ccccceeecccc
Q 025414 236 FPLASWLCCVFP 247 (253)
Q Consensus 236 ~~~~~~~~~~~~ 247 (253)
++-..|-||-+|
T Consensus 19 ~~~G~WGCCP~~ 30 (30)
T 1i8x_A 19 SPYGVWYCSPFS 30 (30)
T ss_dssp CTTSCEEEEECC
T ss_pred cCCCCEecCcCC
Confidence 556688888665
No 10
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha; GM-CSF, receptor complex, dodecamer, disease mutation, glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Probab=4.20 E-value=2.4e+02 Score=21.82 Aligned_cols=8 Identities=25% Similarity=0.821 Sum_probs=0.0
Q ss_pred hcCCccce
Q 025414 226 WRQPSTFH 233 (253)
Q Consensus 226 ~~~~~~~~ 233 (253)
||||+.|+
T Consensus 109 WSqp~~ig 116 (120)
T 3cxe_C 109 WSEAIEFG 116 (120)
T ss_dssp CCCCCCBC
T ss_pred CCCceEcc
Done!