Query 025414
Match_columns 253
No_of_seqs 119 out of 743
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 09:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025414.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025414hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g26a_ g.3.16.1 (A:) N-termin 4.9 1E+02 0.0075 17.0 0.7 12 236-247 19-30 (31)
2 d1i8ya_ g.3.16.1 (A:) N-termin 4.0 1.3E+02 0.0096 16.0 0.6 10 237-246 18-27 (28)
3 d1olla2 b.1.1.4 (A:96-188) Lig 3.6 55 0.004 21.9 -1.6 16 215-230 69-84 (93)
4 d2i9fa1 d.254.1.1 (A:50-105) A 3.1 1.4E+02 0.0099 18.2 0.2 13 208-220 17-29 (56)
5 d1nw1a_ d.144.1.8 (A:) Choline 2.7 2.5E+02 0.018 22.6 1.5 21 207-227 340-360 (395)
6 d1l3pa_ a.24.17.1 (A:) Functio 2.4 2.7E+02 0.02 18.9 1.1 14 211-224 28-41 (102)
7 d2fb1a1 a.4.5.68 (A:150-225) H 2.1 3E+02 0.022 17.7 1.0 18 213-230 9-28 (76)
8 d2fsqa1 d.61.1.4 (A:6-237) Put 2.0 3E+02 0.022 21.4 1.0 26 227-252 71-96 (232)
9 d1l6ja5 g.14.1.2 (A:332-390) G 1.9 2.4E+02 0.018 17.5 0.2 5 243-247 15-19 (59)
10 d1vola1 a.74.1.2 (A:113-207) T 1.9 5.2E+02 0.038 16.2 2.0 22 31-54 35-56 (95)
No 1
>d1g26a_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.88 E-value=1e+02 Score=16.99 Aligned_cols=12 Identities=42% Similarity=1.309 Sum_probs=8.9
Q ss_pred ccccceeecccc
Q 025414 236 FPLASWLCCVFP 247 (253)
Q Consensus 236 ~~~~~~~~~~~~ 247 (253)
.|-..|-||-|+
T Consensus 19 l~sGaWgCCPf~ 30 (31)
T d1g26a_ 19 LPSGAWGCCPFT 30 (31)
T ss_dssp CTTSCEEEEECC
T ss_pred ccCCceeeccCC
Confidence 356779999776
No 2
>d1i8ya_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Carp (Cyprinus carpio) [TaxId: 7962]}
Probab=3.99 E-value=1.3e+02 Score=15.99 Aligned_cols=10 Identities=40% Similarity=1.268 Sum_probs=7.3
Q ss_pred cccceeeccc
Q 025414 237 PLASWLCCVF 246 (253)
Q Consensus 237 ~~~~~~~~~~ 246 (253)
|...|-||-|
T Consensus 18 pygvw~c~p~ 27 (28)
T d1i8ya_ 18 PYGVWYCSPF 27 (28)
T ss_dssp TTSCEEEETT
T ss_pred CcccEEeccC
Confidence 6777888854
No 3
>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.62 E-value=55 Score=21.89 Aligned_cols=16 Identities=38% Similarity=1.051 Sum_probs=8.7
Q ss_pred hhhhhhhhhhhhcCCc
Q 025414 215 FCCFGHFFEVTWRQPS 230 (253)
Q Consensus 215 ~~~~~~~~~~~~~~~~ 230 (253)
+.|.++.-+..||+|+
T Consensus 69 Y~C~~~~~~~~wS~~S 84 (93)
T d1olla2 69 YRCFGSYNNHAWSFPS 84 (93)
T ss_dssp EEEECEEETTEECCCC
T ss_pred EEEEeECCCCCcCCCC
Confidence 5555444455566665
No 4
>d2i9fa1 d.254.1.1 (A:50-105) Arterivirus nucleocapsid protein {Equine arteritis virus [TaxId: 11047]}
Probab=3.15 E-value=1.4e+02 Score=18.16 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=10.7
Q ss_pred Hhhhcchhhhhhh
Q 025414 208 MVLYVDRFCCFGH 220 (253)
Q Consensus 208 ~~~~~~~~~~~~~ 220 (253)
..+||.+|-..||
T Consensus 17 lssnvqrffmigh 29 (56)
T d2i9fa1 17 LSSNVQRFFMIGH 29 (56)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HhhhhhheeEecc
Confidence 4578999999888
No 5
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}
Probab=2.73 E-value=2.5e+02 Score=22.62 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=17.8
Q ss_pred hHhhhcchhhhhhhhhhhhhc
Q 025414 207 AMVLYVDRFCCFGHFFEVTWR 227 (253)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~ 227 (253)
+++-.+..|++..|+|-.+|+
T Consensus 340 ~l~~~v~~~~~~s~l~W~lW~ 360 (395)
T d1nw1a_ 340 DLVQETLPFVPVSHFFWGVWG 360 (395)
T ss_dssp HHHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 355678899999999999994
No 6
>d1l3pa_ a.24.17.1 (A:) Functional domain of pollen allergen Phl P 5b {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=2.40 E-value=2.7e+02 Score=18.94 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=11.7
Q ss_pred hcchhhhhhhhhhh
Q 025414 211 YVDRFCCFGHFFEV 224 (253)
Q Consensus 211 ~~~~~~~~~~~~~~ 224 (253)
-+|.||.|...||-
T Consensus 28 anDKFTVFe~afnk 41 (102)
T d1l3pa_ 28 ADDKFTVFEAAFNK 41 (102)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred cCCceeehHHHHhH
Confidence 68999999877775
No 7
>d2fb1a1 a.4.5.68 (A:150-225) Hypothetical protein BT0354, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=2.15 E-value=3e+02 Score=17.74 Aligned_cols=18 Identities=17% Similarity=0.469 Sum_probs=13.8
Q ss_pred chhhh--hhhhhhhhhcCCc
Q 025414 213 DRFCC--FGHFFEVTWRQPS 230 (253)
Q Consensus 213 ~~~~~--~~~~~~~~~~~~~ 230 (253)
+.||+ |-++||..|..|+
T Consensus 9 e~FTL~eLq~vyE~ilg~~l 28 (76)
T d2fb1a1 9 KLFTLSQLQSLYEAIYGEPM 28 (76)
T ss_dssp SEEEHHHHHHHHHHHHTSCC
T ss_pred ccccHHHHHHHHHHHhCCCC
Confidence 56766 5678999998875
No 8
>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=2.01 E-value=3e+02 Score=21.42 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=16.0
Q ss_pred cCCccceeeccccceeecccccccCC
Q 025414 227 RQPSTFHTCFPLASWLCCVFPVYWPS 252 (253)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (253)
=-|+|||.+.==..|.-.-=+.|||+
T Consensus 71 LP~sSfHMTLfd~~n~~~r~~~~wP~ 96 (232)
T d2fsqa1 71 TPVSSLHMTVFQGVIESRRALPYWPQ 96 (232)
T ss_dssp CCGGGCEEEEEEEEETTCCSTTSSCT
T ss_pred CChhhhhHHHhcccccccccCCCCCc
Confidence 37888888764333433344778886
No 9
>d1l6ja5 g.14.1.2 (A:332-390) Gelatinase B (MMP-9) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.95 E-value=2.4e+02 Score=17.48 Aligned_cols=5 Identities=80% Similarity=1.862 Sum_probs=0.0
Q ss_pred ecccc
Q 025414 243 CCVFP 247 (253)
Q Consensus 243 ~~~~~ 247 (253)
+|+||
T Consensus 15 ~C~FP 19 (59)
T d1l6ja5 15 LCVFP 19 (59)
T ss_dssp BCCSS
T ss_pred ccCCC
No 10
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.87 E-value=5.2e+02 Score=16.22 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=0.0
Q ss_pred cccccccchhhhhhHHHHHHHHHH
Q 025414 31 DEKLFRGSAMTRRGANAAISYMAC 54 (253)
Q Consensus 31 ~~~~~~~~~~~~~~i~aal~Y~~s 54 (253)
+++..+| ....++.++..|.+|
T Consensus 35 ~~~~~~G--r~~~~i~AA~iY~ac 56 (95)
T d1vola1 35 EQKSLKG--RANDAIASACLYIAC 56 (95)
T ss_dssp HTCCCTT--SCHHHHHHHHHHHHH
T ss_pred HhhhhcC--CChHHHHHHHHHHHH
Done!