BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025415
MSGGVGATSKDISLPKEHEVAFKQQDDPTSFQSTKSTATPSKASSNFLSFRQLNALAVVT
VFAASGMISAEDFAFVIFSLIYMFFLFKIAFPPPPQSKESSVFDPNTTILRVYVLVGAII
GLLLPIAYILEGIFEGDKEGIKAAAPHVFLLASQVFMEGVAFSDKFSTPIRVFVPVFYNS
RRIFTIVDWLKTEFSKAEGDNSASARRLYLGRALALANMAFWCFNLFGFLLPVYLPKAFK
KYYSANGNKGKEM

High Scoring Gene Products

Symbol, full name Information P value
AT5G52420 protein from Arabidopsis thaliana 7.5e-57
AT5G23920 protein from Arabidopsis thaliana 6.1e-39
AT1G27990 protein from Arabidopsis thaliana 3.1e-28

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025415
        (253 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2156702 - symbol:AT5G52420 "AT5G52420" species...   585  7.5e-57   1
TAIR|locus:2172878 - symbol:AT5G23920 "AT5G23920" species...   416  6.1e-39   1
TAIR|locus:2010419 - symbol:AT1G27990 "AT1G27990" species...   315  3.1e-28   1


>TAIR|locus:2156702 [details] [associations]
            symbol:AT5G52420 "AT5G52420" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005783 "endoplasmic
            reticulum" evidence=IDA] GO:GO:0005783 EMBL:CP002688 EMBL:AB019226
            UniGene:At.69935 UniGene:At.8914 IPI:IPI00523108 RefSeq:NP_568771.1
            PRIDE:Q9FHB8 EnsemblPlants:AT5G52420.1 GeneID:835318
            KEGG:ath:AT5G52420 TAIR:At5g52420 InParanoid:Q9FHB8 OMA:ARILVPI
            PhylomeDB:Q9FHB8 ProtClustDB:CLSN2917755 Genevestigator:Q9FHB8
            Uniprot:Q9FHB8
        Length = 242

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 114/247 (46%), Positives = 151/247 (61%)

Query:     1 MSGGVGATSKDISLPKEHEVAFKQQDDPTSFQXXXXXXXXXXXXXNFLSFRQLNALAVVT 60
             MSGGVG T  DI+LPKE E   + Q   T                 F SFRQLN LA++ 
Sbjct:     1 MSGGVGPTYNDITLPKEEEEEHQTQSTST--------VSSTGKPAGFFSFRQLNILAIII 52

Query:    61 VFAASGMISAEDFAFVIFSLIYMFFLFKIAFPPPPQSKESSVFDPNTT-ILRVYVLVGAI 119
             V +ASG+++ +DF F I +LIY FFL K+ FPP       +    +T  I R+YV    I
Sbjct:    53 VLSASGLVTIQDFIFTILTLIYFFFLSKLIFPPHNNPNRDAPLTSSTNKIFRIYVTAAGI 112

Query:   120 IGLLLPIAYILEGIFEGDKEGIKAAAPHVFLLASQVFMEGVAFSDKFSTPIRVFVPVFYN 179
             +GL++PI YI EGI E DK G+ AAAPHVFLLASQ+FMEG+A    FS P R+ VP+ YN
Sbjct:   113 VGLIIPICYIFEGIVEDDKNGVSAAAPHVFLLASQIFMEGLATMFGFSAPARILVPIVYN 172

Query:   180 SRRIFTIVDWLKTEFSKAEGDNSASXXXXXXXXXXXXXNMAFWCFNLFGFLLPVYLPKAF 239
             +RR+ T+V+W+ +EFS+ +   + S             N+  W FNLFG L+PVYLP+AF
Sbjct:   173 ARRVLTLVEWIMSEFSREDVTGTVSARRMYAGKVLAAANLGIWSFNLFGVLIPVYLPRAF 232

Query:   240 KKYYSAN 246
             K+YY ++
Sbjct:   233 KRYYGSD 239


>TAIR|locus:2172878 [details] [associations]
            symbol:AT5G23920 "AT5G23920" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005773 "vacuole" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] GO:GO:0005886 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0005773 EMBL:AB005244
            HOGENOM:HOG000243568 EMBL:BT005860 EMBL:AK228179 IPI:IPI00536689
            RefSeq:NP_197780.1 UniGene:At.25273 PaxDb:Q9FF88 PRIDE:Q9FF88
            EnsemblPlants:AT5G23920.1 GeneID:832457 KEGG:ath:AT5G23920
            TAIR:At5g23920 eggNOG:NOG313744 OMA:NARRIFA PhylomeDB:Q9FF88
            ProtClustDB:CLSN2914859 Genevestigator:Q9FF88 Uniprot:Q9FF88
        Length = 229

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 84/200 (42%), Positives = 119/200 (59%)

Query:    51 RQLNALAVVTVFAASGMISAEDFAFVIFSLIYMF-FLFKIAFPPPPQSKESSVFDPNTTI 109
             RQL  L+ + + AA G++   + AFVI   IY++ FL + AFP     ++  + +P   +
Sbjct:    31 RQLVFLSFMILLAAKGLVGIGEIAFVILCYIYLYEFLSRFAFPRKQTEQKKRLSNPKNKL 90

Query:   110 LRVYVLVGAIIGLLLPIAYILEGIFEGDKEGIKAAAPHVFLLASQVFMEGVAFSDKFSTP 169
              + Y L  AIIGLL P+ YI +GI+ GD  G  AAAPH+FLL+ Q F E + FSDK+S P
Sbjct:    91 FQAYFLATAIIGLLFPLCYIGDGIYRGDIHGAGAAAPHLFLLSGQAFTEPIGFSDKYSMP 150

Query:   170 IRVFVPVFYNSRRIFTIVDWLKTEFSKAEGDNSASXXXXXXXXXXXXXNMAFWCFNLFGF 229
             I +  PVFYN+RRIF ++DW+K EFS  +                   N   W +NLFG 
Sbjct:   151 IGILGPVFYNARRIFALLDWVKAEFSDTQ--RPGGPLRLYGGRVIASVNTVMWFYNLFGL 208

Query:   230 LLPVYLPKAFKKYYSANGNK 249
             LLPV+LP++ + Y+S + NK
Sbjct:   209 LLPVFLPRSCEIYFSGD-NK 227


>TAIR|locus:2010419 [details] [associations]
            symbol:AT1G27990 "AT1G27990" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC069471
            UniGene:At.66881 EMBL:AK317213 IPI:IPI00523350 PIR:D86405
            RefSeq:NP_174120.1 PRIDE:Q9C7F4 EnsemblPlants:AT1G27990.1
            GeneID:839692 KEGG:ath:AT1G27990 TAIR:At1g27990
            HOGENOM:HOG000243568 InParanoid:Q9C7F4 OMA:IPRFLPR PhylomeDB:Q9C7F4
            ProtClustDB:CLSN2679353 Genevestigator:Q9C7F4 Uniprot:Q9C7F4
        Length = 271

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 69/196 (35%), Positives = 106/196 (54%)

Query:    52 QLNALAVVTVFAASGMISAEDFAFVIFSLIYMFFLFKIAFPPPPQSKESSVFDPNTTILR 111
             +L  +A + VF+ASG++   D  F  F+ IY+  L ++AFP    S  S      + + R
Sbjct:    47 ELQLVAFILVFSASGLVPILDMLFPAFASIYIIALSRLAFPSHGVSTASPEVFRGSKLFR 106

Query:   112 VYVLVGAIIGLLLPIAYILEGIFEGDKEGIKAAAPHVFLLASQVFMEGVAFS-DKFSTPI 170
             +YV+ G  IGL LP+AY+L G   GD   +++A PH+FLL+ Q+  E V      FS P+
Sbjct:   107 LYVISGTTIGLFLPLAYVLGGFARGDDHAVRSATPHLFLLSCQILTENVISGLSLFSPPV 166

Query:   171 RVFVPVFYNSRRIFTIVDWLKTE-FSKAEGDNSASXXXXXX--XXXXXXXNMAFWCFNLF 227
             R  VP+ Y   RIF I+ W K   F+K+   N+                 N+ ++  NL 
Sbjct:   167 RALVPLLYTVWRIFVIIGWSKDVWFNKSLPINATPNVVTWFWFGRYLALANLGYFGVNLL 226

Query:   228 GFLLPVYLPKAFKKYY 243
              FL+P +LP+AF++Y+
Sbjct:   227 CFLIPRFLPRAFEQYF 242


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.140   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      253       227   0.00079  113 3  11 22  0.47    32
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  159 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.43u 0.11s 18.54t   Elapsed:  00:00:01
  Total cpu time:  18.43u 0.11s 18.54t   Elapsed:  00:00:01
  Start:  Fri May 10 08:07:36 2013   End:  Fri May 10 08:07:37 2013

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