Query 025415
Match_columns 253
No_of_seqs 44 out of 46
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 09:49:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 8tfv_A Protein (thanatin); bac 39.8 7.8 0.00027 23.0 0.5 10 174-183 6-15 (21)
2 3iwt_A 178AA long hypothetical 27.9 15 0.00051 29.2 0.4 14 2-15 88-101 (178)
3 3kbq_A Protein TA0487; structu 22.8 21 0.00072 29.6 0.4 14 2-15 69-82 (172)
4 2g2c_A Putative molybdenum cof 20.1 26 0.00089 28.0 0.4 14 2-15 76-89 (167)
5 1mkz_A Molybdenum cofactor bio 18.5 30 0.001 27.9 0.4 14 2-15 76-89 (172)
6 1yyp_B DNA polymerase, POL; pr 18.5 34 0.0012 21.4 0.6 10 233-242 5-14 (26)
7 1hjr_A Holliday junction resol 18.4 38 0.0013 27.6 1.1 68 180-252 41-119 (158)
8 1y5e_A Molybdenum cofactor bio 17.2 34 0.0012 27.4 0.5 14 2-15 79-92 (169)
9 2pbq_A Molybdenum cofactor bio 16.4 36 0.0012 27.6 0.4 14 2-15 75-88 (178)
10 2is8_A Molybdopterin biosynthe 15.4 39 0.0013 26.8 0.4 14 2-15 69-82 (164)
No 1
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=39.79 E-value=7.8 Score=23.03 Aligned_cols=10 Identities=50% Similarity=1.026 Sum_probs=8.8
Q ss_pred eeeeeeeeee
Q 025415 174 VPVFYNSRRI 183 (253)
Q Consensus 174 VPv~Yn~RRi 183 (253)
|||+|.-||-
T Consensus 6 vpiiycnrrt 15 (21)
T 8tfv_A 6 VPIIYCNRRT 15 (26)
T ss_dssp CCCEEEEGGG
T ss_pred ccEEEEcCcc
Confidence 7999999984
No 2
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=27.87 E-value=15 Score=29.24 Aligned_cols=14 Identities=36% Similarity=0.776 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCC
Q 025415 2 SGGVGATSKDISLP 15 (253)
Q Consensus 2 sggvgpt~~~i~lp 15 (253)
+||+|||-.|++-.
T Consensus 88 tGG~g~~~~D~t~e 101 (178)
T 3iwt_A 88 TGGTGYSPTDITVE 101 (178)
T ss_dssp ESCCSSSTTCCHHH
T ss_pred cCCcccCCCCchHH
Confidence 79999999999743
No 3
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=22.79 E-value=21 Score=29.58 Aligned_cols=14 Identities=43% Similarity=0.816 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCC
Q 025415 2 SGGVGATSKDISLP 15 (253)
Q Consensus 2 sggvgpt~~~i~lp 15 (253)
|||+|||-.|++-.
T Consensus 69 tGG~g~~~~D~T~e 82 (172)
T 3kbq_A 69 SGGLGPTFDDMTVE 82 (172)
T ss_dssp ESCCSSSTTCCHHH
T ss_pred cCCCcCCcccchHH
Confidence 79999999998754
No 4
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=20.10 E-value=26 Score=27.98 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCC
Q 025415 2 SGGVGATSKDISLP 15 (253)
Q Consensus 2 sggvgpt~~~i~lp 15 (253)
+||+|||-.|++-.
T Consensus 76 tGG~g~~~~D~t~e 89 (167)
T 2g2c_A 76 AGGTGIRAKNQTPE 89 (167)
T ss_dssp ESCCSSSTTCCHHH
T ss_pred CCCCCCCCCcChHH
Confidence 79999999999743
No 5
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=18.53 E-value=30 Score=27.93 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCC
Q 025415 2 SGGVGATSKDISLP 15 (253)
Q Consensus 2 sggvgpt~~~i~lp 15 (253)
+||+|||-.|++-.
T Consensus 76 tGG~g~~~~D~t~e 89 (172)
T 1mkz_A 76 TGGTGLTEGDQAPE 89 (172)
T ss_dssp ESCCSSSTTCCHHH
T ss_pred CCCCCCCCCCCHHH
Confidence 79999999999744
No 6
>1yyp_B DNA polymerase, POL; processivity fold (SAME fold AS HSV UL42, PCNA, and homotrim sliding clamps), replication-transferase complex; HET: DNA; 2.50A {Human herpesvirus 5}
Probab=18.51 E-value=34 Score=21.36 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=9.2
Q ss_pred hhhhHHHHHH
Q 025415 233 VYLPKAFKKY 242 (253)
Q Consensus 233 vfLPRAf~~Y 242 (253)
+|||++|.+|
T Consensus 5 iYl~~~Fl~~ 14 (26)
T 1yyp_B 5 LHLEPAFLPY 14 (26)
T ss_pred EecCHHHHHH
Confidence 6899999999
No 7
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=18.37 E-value=38 Score=27.57 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=45.3
Q ss_pred eeeeeehhhHHHHHHhhccCC---------CCccceeeehhhHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHhhcCC
Q 025415 180 SRRIFTIVDWLKTEFSKAEGD---------NSASARRLYLGRALALANMAFWCFNLFGFLLPVY--LPKAFKKYYSANGN 248 (253)
Q Consensus 180 ~RRiF~i~dW~~~e~~k~~~~---------~~~~~~~~~fGR~LAvANl~yw~~NLFgFLiPvf--LPRAf~~Yy~~~~~ 248 (253)
.+|+-.|.+|+.+.+.+-.++ +.....-+-.|++.+++.++--.. =||++ -|+..|++..+.||
T Consensus 41 ~~Rl~~i~~~l~~~i~~~~Pd~vaiE~vf~~~n~~s~~~lgqarGv~~~a~~~~-----~ipv~eytp~~vKkavtG~G~ 115 (158)
T 1hjr_A 41 PSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQ-----ELPVFEYAARQVKQTVVGIGS 115 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHHHHHHHHHHHHHTT-----TCCEEEEEHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeecccccChHHHHHHHHHHHHHHHHHHHc-----CCCEEEECHHHHHHHhhCCCC
Confidence 468899999996666544442 111122255777777776653222 27875 89999999999999
Q ss_pred CCCC
Q 025415 249 KGKE 252 (253)
Q Consensus 249 ~~~~ 252 (253)
-.||
T Consensus 116 A~K~ 119 (158)
T 1hjr_A 116 AEKS 119 (158)
T ss_dssp CCHH
T ss_pred CcHH
Confidence 8875
No 8
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=17.21 E-value=34 Score=27.36 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCC
Q 025415 2 SGGVGATSKDISLP 15 (253)
Q Consensus 2 sggvgpt~~~i~lp 15 (253)
+||+|||-.|++-.
T Consensus 79 tGG~g~g~~D~t~e 92 (169)
T 1y5e_A 79 NGGTGITKRDVTIE 92 (169)
T ss_dssp ECCCSSSTTCCHHH
T ss_pred cCCCCCCCCCCcHH
Confidence 79999999999743
No 9
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=16.37 E-value=36 Score=27.59 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCC
Q 025415 2 SGGVGATSKDISLP 15 (253)
Q Consensus 2 sggvgpt~~~i~lp 15 (253)
+||+|||-.|++-.
T Consensus 75 tGG~g~g~~D~t~e 88 (178)
T 2pbq_A 75 TGGTGPAPRDVTPE 88 (178)
T ss_dssp ESCCSSSTTCCHHH
T ss_pred CCCCCCCCCCchHH
Confidence 79999999999744
No 10
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=15.37 E-value=39 Score=26.84 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCC
Q 025415 2 SGGVGATSKDISLP 15 (253)
Q Consensus 2 sggvgpt~~~i~lp 15 (253)
+||+|||-.|++-.
T Consensus 69 tGG~g~g~~D~t~e 82 (164)
T 2is8_A 69 NGGTGLAPRDRTPE 82 (164)
T ss_dssp ESCCSSSTTCCHHH
T ss_pred cCCCCCCCCCChHH
Confidence 79999999999744
Done!