Query 025415
Match_columns 253
No_of_seqs 44 out of 46
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 09:50:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025415.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025415hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jlja_ c.57.1.1 (A:) Gephyrin 38.3 3.7 0.00027 30.6 0.4 15 2-16 73-87 (169)
2 d2g2ca1 c.57.1.1 (A:1-163) Put 28.0 7 0.00051 29.2 0.4 14 2-15 73-86 (163)
3 d1hjra_ c.55.3.6 (A:) RuvC res 19.5 10 0.00075 28.6 -0.1 69 181-252 42-119 (158)
4 d1h2sb_ f.17.4.1 (B:) Sensory 16.9 42 0.0031 22.4 2.6 37 112-148 3-41 (60)
5 d1fi8a_ b.47.1.2 (A:) Granzyme 13.8 36 0.0026 24.5 1.7 21 174-196 207-227 (227)
6 d1uuya_ c.57.1.1 (A:) Plant CN 11.8 27 0.002 26.2 0.4 12 2-13 76-87 (161)
7 d1e6ya1 a.89.1.1 (A:1284-1569) 10.1 33 0.0024 29.4 0.5 8 1-8 54-61 (286)
8 d1hbna1 a.89.1.1 (A:270-549) A 9.7 35 0.0026 29.1 0.5 8 1-8 55-62 (280)
9 d2f7wa1 c.57.1.1 (A:2-174) Mog 8.8 40 0.0029 24.9 0.4 16 2-17 72-87 (173)
10 d1yuta1 a.39.1.2 (A:1-98) Calc 7.9 85 0.0062 21.3 1.9 16 236-251 17-32 (98)
No 1
>d1jlja_ c.57.1.1 (A:) Gephyrin N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.30 E-value=3.7 Score=30.62 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCc
Q 025415 2 SGGVGATSKDISLPK 16 (253)
Q Consensus 2 sggvgpt~~~i~lp~ 16 (253)
+||+|||-.|++-.-
T Consensus 73 tGG~g~~~~D~T~~a 87 (169)
T d1jlja_ 73 TGGTGFAPRDVTPEA 87 (169)
T ss_dssp ESCCSSSTTCCHHHH
T ss_pred ecCccccccccchhh
Confidence 799999999998653
No 2
>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor biosynthesis protein DIP0503 {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=27.97 E-value=7 Score=29.16 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCCCC
Q 025415 2 SGGVGATSKDISLP 15 (253)
Q Consensus 2 sggvgpt~~~i~lp 15 (253)
+||+|||-.|++-.
T Consensus 73 tGG~g~~~~D~T~~ 86 (163)
T d2g2ca1 73 AGGTGIRAKNQTPE 86 (163)
T ss_dssp ESCCSSSTTCCHHH
T ss_pred cCCCCCCCcccccc
Confidence 79999999999844
No 3
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]}
Probab=19.47 E-value=10 Score=28.58 Aligned_cols=69 Identities=20% Similarity=0.127 Sum_probs=48.6
Q ss_pred eeeeehhhHHHHHHhhccCCC---------CccceeeehhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCCCC
Q 025415 181 RRIFTIVDWLKTEFSKAEGDN---------SASARRLYLGRALALANMAFWCFNLFGFLLPVYLPKAFKKYYSANGNKGK 251 (253)
Q Consensus 181 RRiF~i~dW~~~e~~k~~~~~---------~~~~~~~~fGR~LAvANl~yw~~NLFgFLiPvfLPRAf~~Yy~~~~~~~~ 251 (253)
+|+-.|.+|+.+-+.+-.++. ...+.=+-.|++-+++.++.+..|+=. --|-|+..|++-.++||..|
T Consensus 42 ~Rl~~i~~~l~~li~~~~Pd~vaiE~~f~~~n~~sa~~l~~arG~i~l~a~~~~ipi---~e~~P~~vKk~vtG~G~A~K 118 (158)
T d1hjra_ 42 SRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPV---FEYAARQVKQTVVGIGSAEK 118 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHHHHHHHHHHHHHTTTCCE---EEEEHHHHHHHHTSSSSCCH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeehhccCHHHHHHHHHHHHHHHHHHHHcCcce---eecchhhhheeecCCCCcCH
Confidence 688999999887776544431 111112456888888888877766422 23689999999999999877
Q ss_pred C
Q 025415 252 E 252 (253)
Q Consensus 252 ~ 252 (253)
|
T Consensus 119 ~ 119 (158)
T d1hjra_ 119 S 119 (158)
T ss_dssp H
T ss_pred H
Confidence 5
No 4
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=16.86 E-value=42 Score=22.40 Aligned_cols=37 Identities=32% Similarity=0.532 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHHHHHHH--HhhhhcccchhhhhhcCchh
Q 025415 112 VYVLVGAIIGLLLPIAY--ILEGIFEGDKEGIKAAAPHV 148 (253)
Q Consensus 112 ~Yv~~G~~VGLflPlaY--ILgGf~~GD~~~vrAAaPHl 148 (253)
++.++|++-=||--++| +-..-+.||.++|+-|+-..
T Consensus 3 vfifvgaltvlfgaiaygevtaaaatgdaaavqeaavsa 41 (60)
T d1h2sb_ 3 VFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSA 41 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHhhhhhceehHhhhcCcHHHHHHHHHHH
Confidence 56788999889999998 55667889999998877543
No 5
>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.75 E-value=36 Score=24.51 Aligned_cols=21 Identities=24% Similarity=0.680 Sum_probs=16.8
Q ss_pred eeeeeeeeeeeehhhHHHHHHhh
Q 025415 174 VPVFYNSRRIFTIVDWLKTEFSK 196 (253)
Q Consensus 174 VPv~Yn~RRiF~i~dW~~~e~~k 196 (253)
.|-+|+ ||-.-.||+++.+.|
T Consensus 207 ~p~vyt--~v~~y~~WI~~~i~~ 227 (227)
T d1fi8a_ 207 TPRAFT--KVSTFLSWIKKTMKK 227 (227)
T ss_dssp SCEEEE--EGGGGHHHHHHHHCC
T ss_pred CCeEEE--EHHHHHHHHHHHHcC
Confidence 367787 899999999998653
No 6
>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.75 E-value=27 Score=26.17 Aligned_cols=12 Identities=42% Similarity=0.841 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCC
Q 025415 2 SGGVGATSKDIS 13 (253)
Q Consensus 2 sggvgpt~~~i~ 13 (253)
+||+||+-.|++
T Consensus 76 tGGtg~g~~D~T 87 (161)
T d1uuya_ 76 LGGTGFTPRDVT 87 (161)
T ss_dssp ESCCSSSTTCCH
T ss_pred ecCCCCCcccCc
Confidence 699999999987
No 7
>d1e6ya1 a.89.1.1 (A:1284-1569) Alpha chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=10.08 E-value=33 Score=29.40 Aligned_cols=8 Identities=88% Similarity=1.244 Sum_probs=7.1
Q ss_pred CCCCCCCC
Q 025415 1 MSGGVGAT 8 (253)
Q Consensus 1 msggvgpt 8 (253)
||||||=|
T Consensus 54 mSGGVGFT 61 (286)
T d1e6ya1 54 MSGGVGFT 61 (286)
T ss_dssp TSCTTCCH
T ss_pred ccCCCCcc
Confidence 99999965
No 8
>d1hbna1 a.89.1.1 (A:270-549) Alpha chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=9.70 E-value=35 Score=29.14 Aligned_cols=8 Identities=88% Similarity=1.244 Sum_probs=7.1
Q ss_pred CCCCCCCC
Q 025415 1 MSGGVGAT 8 (253)
Q Consensus 1 msggvgpt 8 (253)
||||||=|
T Consensus 55 mSGGVGFT 62 (280)
T d1hbna1 55 MSGGVGFT 62 (280)
T ss_dssp TTCTTCCH
T ss_pred ccCCCCcc
Confidence 99999965
No 9
>d2f7wa1 c.57.1.1 (A:2-174) MogA {Shewanella oneidensis [TaxId: 70863]}
Probab=8.85 E-value=40 Score=24.94 Aligned_cols=16 Identities=25% Similarity=0.646 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCCch
Q 025415 2 SGGVGATSKDISLPKE 17 (253)
Q Consensus 2 sggvgpt~~~i~lp~~ 17 (253)
+||+||+-.|++-.-.
T Consensus 72 tGGtG~~~~D~T~ea~ 87 (173)
T d2f7wa1 72 TGGTGPAKRDVTPEAT 87 (173)
T ss_dssp ESCCSSSTTCCHHHHH
T ss_pred ecccccccchhHHHHH
Confidence 6999999999875433
No 10
>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]}
Probab=7.92 E-value=85 Score=21.31 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=12.7
Q ss_pred hHHHHHHHhhcCCCCC
Q 025415 236 PKAFKKYYSANGNKGK 251 (253)
Q Consensus 236 PRAf~~Yy~~~~~~~~ 251 (253)
=++|++|...+||+|.
T Consensus 17 ~~vF~~y~d~dg~~g~ 32 (98)
T d1yuta1 17 VTTFFTFARQEGRKDS 32 (98)
T ss_dssp HHHHHHHHTTSSSSSC
T ss_pred HHHHHHHcccCCCCCE
Confidence 4789999888888774
Done!