BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025416
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QR0|A Chain A, Crystal Structure Of The 4'-Phosphopantetheinyl
Transferase Sfp- Coenzyme A Complex
Length = 228
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 25/165 (15%)
Query: 68 REKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENG 127
REK ++ + D + LL VLVR+ I+R Q++ ++F YGKP
Sbjct: 29 REKCRRFYHKEDAHR--TLLGDVLVRSVISR---QYQLDKSDIRFSTQEYGKP------- 76
Query: 128 DKWCPPPL---HFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEV 184
C P L HFNISH+ V G + PIGID+E + K L AKR+FS E
Sbjct: 77 ---CIPDLPDAHFNISHSGRWV-IGAFDSQPIGIDIE----KTKPISLEIAKRFFSKTEY 128
Query: 185 KLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIR 229
L A D + Q LW++KE+++K G+G S P ++F++R
Sbjct: 129 SDLLA-KDKDEQTDYFYHLWSMKESFIKQEGKGLS-LPLDSFSVR 171
>pdb|2CG5|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase-
Phosphopantetheinyl Transferase In Complex With
Cytosolic Acyl Carrier Protein And Coenzyme A
Length = 319
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 67 PREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWEN 126
P EK+ + + K+A+ R+++R +A + N N ++ ++T GKP + ++
Sbjct: 52 PEEKERIGQFVFARDAKAAMAGRLMIRKLVAE-KLNIPWN--HIRLQRTAKGKPVLAKDS 108
Query: 127 GDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAF---AKRYFSPDE 183
+ + P +FNISH + +GID+ + + I F KR F+ E
Sbjct: 109 SNPY--PNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKE 166
Query: 184 VKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS 219
+ + + D Q + W LKE+++KA+G G
Sbjct: 167 WETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLG 202
>pdb|2BYD|A Chain A, Structure Of Aminoadipate-semialdehyde Dehydrogenase-
Phosphopantetheinyl Transferase
pdb|2C43|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase-
Phosphopantetheinyl Transferase In Complex With Coenzyme
A
Length = 323
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 67 PREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWEN 126
P EK+ + + K+A+ R+++R +A + N N ++ ++T GKP + ++
Sbjct: 52 PEEKERIGQFVFARDAKAAMAGRLMIRKLVAE-KLNIPWN--HIRLQRTAKGKPVLAKDS 108
Query: 127 GDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAF---AKRYFSPDE 183
+ + P +FNISH + +GID+ + + I F KR F+ E
Sbjct: 109 SNPY--PNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKE 166
Query: 184 VKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS 219
+ + + D Q + W LKE+++KA+G G
Sbjct: 167 WETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLG 202
>pdb|1FTE|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 1)
pdb|1FTE|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 1)
pdb|1FTE|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 1)
pdb|1FTF|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 2)
pdb|1FTF|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 2)
pdb|1FTF|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 2)
pdb|1FTH|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (3'5'-Adp Complex)
pdb|1FTH|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (3'5'-Adp Complex)
pdb|1FTH|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (3'5'-Adp Complex)
Length = 122
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 154 VPIGIDVEEKQRRLKNKIL---AFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAY 210
V GID+EE +++ + FAKR + E++ T++ Q + L W+ KEA+
Sbjct: 5 VGHGIDIEELAS-IESAVTRHEGFAKRVLTALEMERFTSLKGRR-QIEYLAGRWSAKEAF 62
Query: 211 VKAVGRGFSAAPFNTFTI 228
KA+G G S F +
Sbjct: 63 SKAMGTGISKLGFQDLEV 80
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
pdb|1YNJ|D Chain D, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNJ|J Chain J, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNN|D Chain D, Taq Rna Polymerase-rifampicin Complex
pdb|1YNN|J Chain J, Taq Rna Polymerase-rifampicin Complex
Length = 1524
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 137 FNISHTSSLVACGVTVNVPIGIDVEEKQRRLKN---KILAFAKRYFSPDEVKLLTAISDP 193
F +S TS G+T+ + + EEKQR L+ K+ + Y E+ LT D
Sbjct: 939 FTLSTTS-----GITIGIDDAVIPEEKQRYLEEADRKLRQIEQAY----EMGFLT---DR 986
Query: 194 EIQRQELIKLWT-LKEAYVKAVGRGFSAA-PFNTFTIRAR 231
E + ++I+LWT E +AV + F PFN + A+
Sbjct: 987 E-RYDQVIQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQ 1025
>pdb|1DIO|A Chain A, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
pdb|1DIO|L Chain L, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
pdb|1EGM|A Chain A, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1EGM|L Chain L, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1EEX|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EEX|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EGV|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1EGV|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1IWB|A Chain A, Crystal Structure Of Diol Dehydratase
pdb|1IWB|L Chain L, Crystal Structure Of Diol Dehydratase
pdb|1UC4|A Chain A, Structure Of Diol Dehydratase Complexed With (S)-1,2-
Propanediol
pdb|1UC4|L Chain L, Structure Of Diol Dehydratase Complexed With (S)-1,2-
Propanediol
pdb|1UC5|A Chain A, Structure Of Diol Dehydratase Complexed With (r)-1,2-
Propanediol
pdb|1UC5|L Chain L, Structure Of Diol Dehydratase Complexed With (r)-1,2-
Propanediol
pdb|3AUJ|A Chain A, Structure Of Diol Dehydratase Complexed With Glycerol
pdb|3AUJ|L Chain L, Structure Of Diol Dehydratase Complexed With Glycerol
Length = 554
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 175 AKRYFSPDEVKLLTAISDPEIQRQELIKLWT 205
A+ + D VKL + DP ++R E++ L T
Sbjct: 76 AEEVMAMDSVKLANMLCDPNVKRSEIVPLTT 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,685,453
Number of Sequences: 62578
Number of extensions: 243812
Number of successful extensions: 653
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 9
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)