Query 025417
Match_columns 253
No_of_seqs 169 out of 1570
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:35:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0945 Alpha-aminoadipic semi 100.0 6E-36 1.3E-40 257.5 13.3 201 29-234 4-206 (289)
2 COG2091 Sfp Phosphopantetheiny 100.0 5.8E-34 1.3E-38 245.0 14.2 176 43-234 4-179 (223)
3 PRK10351 holo-(acyl carrier pr 100.0 1.7E-30 3.6E-35 217.9 11.9 141 64-229 8-148 (187)
4 PRK10251 phosphopantetheinyltr 99.9 1.2E-26 2.5E-31 197.6 13.6 162 41-232 15-178 (207)
5 COG2977 EntD Phosphopantethein 99.8 3.6E-20 7.8E-25 157.0 13.3 173 39-238 16-193 (228)
6 PF01648 ACPS: 4'-phosphopante 99.6 1.7E-15 3.8E-20 116.9 6.2 94 155-251 1-115 (115)
7 PRK14659 acpS 4'-phosphopantet 99.6 1.4E-14 3E-19 114.2 9.8 97 155-252 4-118 (122)
8 TIGR00556 pantethn_trn phospho 99.5 1.3E-13 2.9E-18 109.2 10.1 96 154-252 3-124 (128)
9 PRK14656 acpS 4'-phosphopantet 99.5 2.1E-13 4.6E-18 108.0 9.4 95 155-252 4-122 (126)
10 PRK14660 acpS 4'-phosphopantet 99.4 8E-13 1.7E-17 104.6 10.0 95 155-252 4-122 (125)
11 TIGR00516 acpS holo-[acyl-carr 99.4 7.9E-13 1.7E-17 104.1 9.7 94 155-252 3-118 (121)
12 PRK14658 acpS 4'-phosphopantet 99.4 6.2E-13 1.3E-17 103.5 8.5 94 155-252 4-108 (115)
13 PRK14661 acpS 4'-phosphopantet 99.4 5.4E-13 1.2E-17 109.6 7.9 90 155-252 4-106 (169)
14 PRK14657 acpS 4'-phosphopantet 99.4 1.3E-12 2.7E-17 103.2 9.0 92 155-252 4-120 (123)
15 COG0736 AcpS Phosphopantethein 99.4 1.6E-12 3.4E-17 102.5 8.5 94 155-252 4-122 (127)
16 PRK00070 acpS 4'-phosphopantet 99.3 1.2E-11 2.7E-16 97.5 9.1 94 155-252 4-122 (126)
17 PRK14663 acpS 4'-phosphopantet 99.3 2.9E-11 6.4E-16 94.4 10.7 92 158-252 4-112 (116)
18 PRK14662 acpS 4'-phosphopantet 99.3 2E-11 4.3E-16 95.9 8.9 91 155-252 4-116 (120)
19 PRK14658 acpS 4'-phosphopantet 99.2 9E-11 2E-15 91.4 9.5 85 61-150 23-107 (115)
20 PRK00070 acpS 4'-phosphopantet 99.1 2.8E-10 6E-15 89.8 8.5 86 61-150 27-121 (126)
21 PRK14659 acpS 4'-phosphopantet 98.8 3.3E-08 7.1E-13 77.9 10.1 87 61-150 27-117 (122)
22 PRK14660 acpS 4'-phosphopantet 98.8 2E-08 4.3E-13 79.5 8.8 86 61-150 27-121 (125)
23 COG0736 AcpS Phosphopantethein 98.8 3E-08 6.4E-13 78.3 8.6 85 61-149 27-120 (127)
24 PRK14662 acpS 4'-phosphopantet 98.8 2.8E-08 6.1E-13 78.1 8.3 85 61-150 27-115 (120)
25 PRK14663 acpS 4'-phosphopantet 98.8 4.2E-08 9E-13 76.6 9.0 86 61-150 21-111 (116)
26 TIGR00516 acpS holo-[acyl-carr 98.8 5.1E-08 1.1E-12 76.7 9.3 86 61-150 26-117 (121)
27 PRK14657 acpS 4'-phosphopantet 98.6 2.3E-07 5E-12 73.2 8.4 84 61-150 27-119 (123)
28 PRK14656 acpS 4'-phosphopantet 98.5 5E-07 1.1E-11 71.5 8.7 86 61-150 27-121 (126)
29 PRK14661 acpS 4'-phosphopantet 98.2 1.1E-05 2.4E-10 66.6 8.8 84 60-150 19-105 (169)
30 TIGR00556 pantethn_trn phospho 97.6 0.0004 8.7E-09 54.8 9.0 88 61-150 26-123 (128)
31 PF01648 ACPS: 4'-phosphopante 97.1 0.0012 2.5E-08 50.4 5.7 88 61-150 21-115 (115)
32 PF13986 DUF4224: Domain of un 85.0 2.8 6.1E-05 27.2 4.8 41 64-123 2-42 (47)
33 COG0643 CheA Chemotaxis protei 78.3 6.2 0.00013 40.1 6.8 104 115-239 456-568 (716)
34 PF11572 DUF3234: Protein of u 54.4 5.3 0.00012 29.7 0.6 15 202-216 57-71 (103)
35 cd08778 Death_TNFRSF21 Death d 39.3 69 0.0015 22.6 4.2 53 157-209 2-58 (84)
36 cd08324 CARD_NOD1_CARD4 Caspas 27.8 1.8E+02 0.0039 21.4 4.9 43 172-214 22-70 (85)
37 PF02772 S-AdoMet_synt_M: S-ad 27.3 1.1E+02 0.0023 24.0 4.0 28 108-144 55-82 (120)
38 cd08777 Death_RIP1 Death Domai 21.4 3.2E+02 0.007 19.7 5.4 50 160-209 5-58 (86)
39 KOG0180 20S proteasome, regula 21.1 77 0.0017 26.6 2.2 71 110-189 108-181 (204)
40 PF09866 DUF2093: Uncharacteri 20.1 65 0.0014 20.4 1.2 16 142-158 4-19 (42)
41 PHA02085 hypothetical protein 20.0 1.4E+02 0.003 21.6 3.0 32 75-110 4-35 (87)
No 1
>KOG0945 consensus Alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=6e-36 Score=257.50 Aligned_cols=201 Identities=36% Similarity=0.564 Sum_probs=169.2
Q ss_pred CCCCCCCCCCCCeEEEEEEeCCCC-CChhhHHHHhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 025417 29 PPLVPVKLPSKMETHFWYVLPDEV-KSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNP 107 (253)
Q Consensus 29 ~~~~~~~~~~~~~v~lw~~~~~~~-~~~~~~~~~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g~~p 107 (253)
|..++...|.-...+.|.+....+ ..-+++..+.+.|+++|++|+.+|+..+|+...|+||++.|++++.+ .|++|
T Consensus 4 ~~~~~~~v~r~~~~~~wAf~~~~~e~s~a~f~~a~~~ls~se~erI~qfr~~~DakaaL~grLl~R~~~a~~---~~~~~ 80 (289)
T KOG0945|consen 4 PSLVPCKVPRWMISLQWAFVVPDFEKSLALFRHAVQSLSPSEKERILQFRFDEDAKAALAGRLLVRHLVAIY---LGVPW 80 (289)
T ss_pred chhhhhhhhHHHhhhhhheecchhhhhHHHHHHHHHhCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---hCCCh
Confidence 445555555545567786554433 33457888889999999999999999999999999999999999999 79999
Q ss_pred CceeEeeCCCCCceeecCCCCCCCCCCeEEEEcccccceeEEEccccccccchhHH-HHhhhhhHHHHHHhcCCHHHHHH
Q 025417 108 RSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEK-QRRLKNKILAFAKRYFSPDEVKL 186 (253)
Q Consensus 108 ~~i~i~~~~~GkP~l~~~~~~~~~~~~~~fSISHs~~~v~~a~s~~~~VGVDIE~~-~~~~~~~~~~l~~~~fs~~E~~~ 186 (253)
++++|.++.+|||.+.+.. -....+.++|||||.|++++||.....+|||||+.. .+....++.++++++||++|++.
T Consensus 81 n~l~f~rt~~GKP~l~qn~-~~p~~~~f~fNvSH~gd~iv~at~~~~~VGIDIm~~~~r~~~~e~l~~~kr~fS~~E~k~ 159 (289)
T KOG0945|consen 81 NELRFSRTEYGKPVLWQNY-SNPFSPTFGFNVSHQGDLIVVATTVHVPVGIDIMRPKERKTAHEELELFKRVFSEDEWKM 159 (289)
T ss_pred hHeEeecccCCCcchhhcc-cCCCCCCccceeeeeceEEEEeccCCcccceeeeecccccchHHHHHHHHHhcCHHHHHH
Confidence 9999999999999543221 112357899999999999999998789999999998 44456788999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHHHhccCCCCCCCCCceEEEEecCCC
Q 025417 187 LTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVK 234 (253)
Q Consensus 187 l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~~~l~~~~i~~~~~~ 234 (253)
+.+.+++..+...||++||+||||+||+|.||. .+|+.+.|...+-+
T Consensus 160 l~s~~~e~~~~~~FyrlWtLKEa~lKAtGvGl~-~~L~~~~F~~~p~~ 206 (289)
T KOG0945|consen 160 LKSAPDEEVQRTMFYRLWTLKEAILKATGVGLN-TDLSLLDFSANPFN 206 (289)
T ss_pred HHcCCChhhHHHHHHHHHHHHHHHHHHhcCCcc-cccccccccccccc
Confidence 999998888999999999999999999999998 78888888877665
No 2
>COG2091 Sfp Phosphopantetheinyl transferase [Coenzyme metabolism]
Probab=100.00 E-value=5.8e-34 Score=245.00 Aligned_cols=176 Identities=25% Similarity=0.361 Sum_probs=151.0
Q ss_pred EEEEEeCCCCCChhhHHHHhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEeeCCCCCcee
Q 025417 43 HFWYVLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEV 122 (253)
Q Consensus 43 ~lw~~~~~~~~~~~~~~~~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g~~p~~i~i~~~~~GkP~l 122 (253)
.+|.+..... -...+..+..++.+|+.|..+|++.+||.+|+++|.++|.+|+.. ++++|.++.|.+++.|||++
T Consensus 4 ~~~v~~~~~~--~~~~~~~l~~~~~~E~~r~~r~~~~~dr~r~l~~~~~lr~lls~~---l~~~~~~~~~~~~~~GKP~~ 78 (223)
T COG2091 4 TVFVVGIQSD--RPLIERRLPSLLSEEARRGPRYRNKRDRERFLASRLLLRALLSIA---LGLDPELLQISYGERGKPYL 78 (223)
T ss_pred eEEEEeccCc--chhhhhhhcccchHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHH---hCCCcccceeeECCCCCccc
Confidence 3455554321 234556678888889999999999999999999999999999998 79999999999999999999
Q ss_pred ecCCCCCCCCCCeEEEEcccccceeEEEccccccccchhHHHHhhhhhHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHH
Q 025417 123 DWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIK 202 (253)
Q Consensus 123 ~~~~~~~~~~~~~~fSISHs~~~v~~a~s~~~~VGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~ 202 (253)
.. ...++|||||||+|++|+++..++||||||.+.++ ..+..+++.+|++.|.+.+.....+ .+.++||+
T Consensus 79 ~~-------~~~~~FniSHSg~~v~v~l~~~~~iGVDIE~~~p~--~~~~~la~~ff~~~e~~e~~~~~~~-~~~~~F~~ 148 (223)
T COG2091 79 PD-------ENLLDFNISHSGDYVAVALSKEGEIGVDIEKIRPR--AGWRSLAARFFHPFEPNELAWLDKD-QDNEAFYR 148 (223)
T ss_pred cC-------CCCCcEEEeeeCCeEEEEEecccceeeeEEEecCC--CcchhhHHHhcCcccHHHHhhcChH-HHHHHHHH
Confidence 95 24499999999999999999779999999998763 2577889999999999999998754 45899999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEEecCCC
Q 025417 203 LWTLKEAYVKAVGRGFSAAPFNTFTIRARVVK 234 (253)
Q Consensus 203 ~Wt~KEA~~Ka~G~GL~~~~l~~~~i~~~~~~ 234 (253)
+||+|||++|++|.||. .+|+++.+......
T Consensus 149 lWt~KEA~lKa~G~Gl~-~~L~~~~~~~~~~~ 179 (223)
T COG2091 149 LWTLKEAVLKATGKGLA-DGLSSVDLTPIAGK 179 (223)
T ss_pred HHHHHHHHHHhhCCccc-cCccceeecccccc
Confidence 99999999999999998 79999999865554
No 3
>PRK10351 holo-(acyl carrier protein) synthase 2; Provisional
Probab=99.97 E-value=1.7e-30 Score=217.90 Aligned_cols=141 Identities=26% Similarity=0.313 Sum_probs=117.0
Q ss_pred cCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEeeCCCCCceeecCCCCCCCCCCeEEEEcccc
Q 025417 64 LLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTS 143 (253)
Q Consensus 64 ~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g~~p~~i~i~~~~~GkP~l~~~~~~~~~~~~~~fSISHs~ 143 (253)
-|+++-.+++. ++++|.+|++||.++|++++.. | .|.++++|||++.. ..+++||||||+
T Consensus 8 ~~~~~~~~~~~---~~kRR~efLagR~lLr~~L~~~-------p---~i~~~~~GKP~l~~-------~~~~~fSISHSg 67 (187)
T PRK10351 8 PLPPALREQAP---QGPRRARWLAGRVLLSHALSPL-------P---EIIYGEQGKPAFAP-------ETPLWFNLSHSG 67 (187)
T ss_pred cCCHHHHHhCC---CHHHHHHHHHHHHHHHHHhhcC-------C---CcccCcCCCccccC-------CCCCeEEEeccc
Confidence 36665555444 6899999999999999998752 2 37899999999973 357999999999
Q ss_pred cceeEEEccccccccchhHHHHhhhhhHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 025417 144 SLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPF 223 (253)
Q Consensus 144 ~~v~~a~s~~~~VGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~~~l 223 (253)
++++|+++...+||||||.+.++ .++..+++++|+++|++++.+.+. +++..+|+++||+|||++|+.|.++. ++
T Consensus 68 ~~va~a~s~~~~VGIDIE~i~~~--~~~~~la~~~fs~~E~~~L~~~~~-~~~~~~F~~lWT~KEA~lKa~G~~~~--~~ 142 (187)
T PRK10351 68 DDIALLLSDEGEVGCDIEVIRPR--ANWRSLANAVFSLGEHAEMDAVHP-EQQLEAFWRIWTRKEAIVKQRGGSAW--QI 142 (187)
T ss_pred CcEEEEEEcCCCeEEEEEEecCc--cCHHHHHHHhCCHHHHHHHHcCCc-hhHHHHHHHHHHHHHHHhcccCCCCc--cc
Confidence 99999999668999999998763 357789999999999999998774 45789999999999999999999986 34
Q ss_pred ceEEEE
Q 025417 224 NTFTIR 229 (253)
Q Consensus 224 ~~~~i~ 229 (253)
..+.+.
T Consensus 143 ~~~~~~ 148 (187)
T PRK10351 143 VSVDST 148 (187)
T ss_pred cccCcc
Confidence 444444
No 4
>PRK10251 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; Provisional
Probab=99.94 E-value=1.2e-26 Score=197.57 Aligned_cols=162 Identities=20% Similarity=0.159 Sum_probs=124.6
Q ss_pred eEEEEEE--eCCCCCChhhHHHHhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEeeCCCC
Q 025417 41 ETHFWYV--LPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYG 118 (253)
Q Consensus 41 ~v~lw~~--~~~~~~~~~~~~~~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g~~p~~i~i~~~~~G 118 (253)
.+.+|.. +++.+. ++.+ +..--|....++. ++||.||++||.++|.+|.+. |..+ + ..++++|
T Consensus 15 ~~~~~~~~Fd~~~~~-~~~~---~~i~~p~~l~~Av----~kRr~EflAgR~~A~~aL~~l----g~~~--~-~~~g~~r 79 (207)
T PRK10251 15 GHTLHFVEFDPASFH-EQDL---LWLPHYAQLQHAG----RKRKAEHLAGRIAAVYALREY----GYKC--V-PAIGELR 79 (207)
T ss_pred CcEEEEEEechHHCC-HhHc---cCCCCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHh----CCCC--C-CCcCCCC
Confidence 4555544 444443 3222 2333355666655 799999999999999999985 5543 2 2679999
Q ss_pred CceeecCCCCCCCCCCeEEEEcccccceeEEEccccccccchhHHHHhhhhhHHHHHHhcCCHHHHHHHhcCCCchHHHH
Q 025417 119 KPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQ 198 (253)
Q Consensus 119 kP~l~~~~~~~~~~~~~~fSISHs~~~v~~a~s~~~~VGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~ 198 (253)
+|+|+ .++++|||||+++++|+++ ...||||||.+.+ .....++++.+|+++|++++...+.+ +..
T Consensus 80 ~P~wP---------~gi~gSISHS~~~a~aav~-~~~VGIDIE~~~~--~~~~~~i~~~ilt~~E~~~l~~~~~~--~~~ 145 (207)
T PRK10251 80 QPVWP---------AGVYGSISHCGTTALAVVS-RQPIGIDIEEIFS--AQTATELTDNIITPAEHERLADCGLA--FPL 145 (207)
T ss_pred CccCC---------CCceeCcccccCeEEEEEe-CCCcEEEeeeccc--cchHHHHHHHhCCHHHHHHHHcCCcc--ccc
Confidence 99998 4799999999999999998 5689999999743 23467899999999999999987642 456
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCceEEEEecC
Q 025417 199 ELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARV 232 (253)
Q Consensus 199 ~f~~~Wt~KEA~~Ka~G~GL~~~~l~~~~i~~~~ 232 (253)
.++.+||+|||++||+|.. ...+|.+..+..-+
T Consensus 146 ~~tlifSAKEAlfKA~~~~-~~~~F~~a~i~~~~ 178 (207)
T PRK10251 146 ALTLAFSAKESAFKASEIQ-TLAGFLDYQIISWN 178 (207)
T ss_pred ceeeeeeHHHHHHHhcCcc-ccCCCCeEEEEEec
Confidence 7899999999999999998 45788888776444
No 5
>COG2977 EntD Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=3.6e-20 Score=157.00 Aligned_cols=173 Identities=19% Similarity=0.125 Sum_probs=129.5
Q ss_pred CCeEEEEEEeCCCCCChhhHHHHhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEeeCCCC
Q 025417 39 KMETHFWYVLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYG 118 (253)
Q Consensus 39 ~~~v~lw~~~~~~~~~~~~~~~~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g~~p~~i~i~~~~~G 118 (253)
...++.-.++.+...++ -..+++++....... .+++|.||++||.++|++|.++ |+ .+..+.++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~-----~a~~~p~~p~~i~~a--v~KRkaEflAgR~cA~~AL~~l----g~--~~~Pi~~G~~r 82 (228)
T COG2977 16 GHTLHFVEFDPAPFCEP-----DALWLPEEPPLIARA--VPKRKAEFLAGRICARQALREL----GV--ADVPILRGEDR 82 (228)
T ss_pred CCceeEEEccccccCCc-----hhhcCCCCcchhhhh--hHHHHHHHHHHHHHHHHHHHHh----CC--CCCCcccCCCC
Confidence 44677777776654321 124455444332222 3799999999999999999986 64 36678999999
Q ss_pred CceeecCCCCCCCCCCeEEEEcccccceeEEEccc---cccccchhHHHHhhhhhHHHHHHhcCCHHHHHHHhcCCCchH
Q 025417 119 KPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVN---VPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEI 195 (253)
Q Consensus 119 kP~l~~~~~~~~~~~~~~fSISHs~~~v~~a~s~~---~~VGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~ 195 (253)
.|.|+ .++..|||||+++++++++.. ..||||||.+.. ..+..+++..+.|++|+..+.+....
T Consensus 83 aPlWP---------~gvvGSIsH~~~~A~Avv~~~~~~~~iGIDiE~~~~--~~~a~ei~~~I~t~~E~~~l~~~~~~-- 149 (228)
T COG2977 83 APLWP---------AGVVGSISHCDGTALAVVARRGRVRSIGIDIEPHES--LPTAREIADIIITPAERARLARAGLA-- 149 (228)
T ss_pred CCCCC---------CcceEEeeccCCeeeEeeecccccccceeecccccc--CcchhHHHHHhCCHHHHHHHhhcccc--
Confidence 99998 589999999999999999852 679999999876 34567789999999999999886532
Q ss_pred HHHHHHHHHHHHHHHHhccCC--CCCCCCCceEEEEecCCCcccE
Q 025417 196 QRQELIKLWTLKEAYVKAVGR--GFSAAPFNTFTIRARVVKMGGF 238 (253)
Q Consensus 196 ~~~~f~~~Wt~KEA~~Ka~G~--GL~~~~l~~~~i~~~~~~~~~~ 238 (253)
...+.+.++++|||++||... +-- .+|.+..|.......+..
T Consensus 150 ~~~~~tLlFsAKESlfKA~yP~~~r~-~gFedA~i~~~~~~~~~~ 193 (228)
T COG2977 150 FLLALTLLFSAKESLFKALYPLVKRW-LGFEDAQISSDTDRQGSF 193 (228)
T ss_pred hhhhhhhhhhhhHHHHHhhhhhhhhh-cCchhheeeeccCcccee
Confidence 334467899999999999863 433 567777777665554333
No 6
>PF01648 ACPS: 4'-phosphopantetheinyl transferase superfamily; InterPro: IPR008278 These proteins transfer the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of pp-binding. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP []. This superfamily consists of two subtypes: The ACPS type such as ACPS_ECOLI and the Sfp type such as SFP_BACSU. The structure of the Sfp type is known [], which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion. ; GO: 0000287 magnesium ion binding, 0008897 holo-[acyl-carrier-protein] synthase activity, 0009059 macromolecule biosynthetic process; PDB: 3QMN_S 3GWM_A 3NFD_D 3NE9_C 1FTH_C 1FTE_C 1FTF_B 3HYK_B 2WDY_A 2WDS_A ....
Probab=99.59 E-value=1.7e-15 Score=116.86 Aligned_cols=94 Identities=30% Similarity=0.427 Sum_probs=71.1
Q ss_pred ccccchhHHHHhhhhhHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccC-CCCCCCCCceEEEEecCC
Q 025417 155 PIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVG-RGFSAAPFNTFTIRARVV 233 (253)
Q Consensus 155 ~VGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G-~GL~~~~l~~~~i~~~~~ 233 (253)
+||||||.+.+.......++++++||++|+.++.+.+. .++.+.|+.+||+|||++||+| .| . .+++...|.+...
T Consensus 1 ~iGiDIe~~~~~~~~~~~~~~~~~~t~~E~~~l~~~~~-~~~~~~~~~~Wt~KEA~~Ka~g~~g-~-~~~~~~~i~~~~~ 77 (115)
T PF01648_consen 1 GIGIDIEKIDRPRERRFEKFAERFFTPEELEWLRSLPS-EERLQAFTLLWTAKEAVYKALGLTG-S-LDLSFREIELHKP 77 (115)
T ss_dssp EEEEEEEEHHHHHHHHTTHHHHHHS-HHHHHHHHCTSS-HHHHHHHHHHHHHHHHHHHHHTTST-S-STSHGGGEEEEES
T ss_pred CEEEEeeEeccccccCHHHHHHHhCCHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHHHhcccC-C-cccccEEEEEEcC
Confidence 58999999986211245788999999999999999886 4578999999999999999999 88 3 3455444444333
Q ss_pred --C------------------cccEEeecCCCeEEEEe
Q 025417 234 --K------------------MGGFHHFDTQHSEVKLV 251 (253)
Q Consensus 234 --~------------------~~~~~~~~~~~~~~~~~ 251 (253)
+ ...++.+++++++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v 115 (115)
T PF01648_consen 78 PGGRPSLSLWASWIFDGDKIWRFHVSISHDEDYAAAFV 115 (115)
T ss_dssp TTSCEEEEEHHHHHHHHTTTEEEEEEEEEESSEEEEEE
T ss_pred CCCCeEEEEeHHhhhhhcCceEEEEEEEeCCCEEEEEC
Confidence 2 34567888888888764
No 7
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.57 E-value=1.4e-14 Score=114.17 Aligned_cols=97 Identities=25% Similarity=0.300 Sum_probs=75.7
Q ss_pred ccccchhHHHHhhhh----hHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccCCCCC-CCCCceEEEE
Q 025417 155 PIGIDVEEKQRRLKN----KILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS-AAPFNTFTIR 229 (253)
Q Consensus 155 ~VGVDIE~~~~~~~~----~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~-~~~l~~~~i~ 229 (253)
.|||||+.+.+. .. ....+++++||++|+..+........+.+.|+..|++|||++||+|+|+. ...+++++|.
T Consensus 4 giGiDiv~i~ri-~~~~~~~~~~f~~r~ft~~E~~~~~~~~~~~~~~~~la~rwaaKEA~~KAlg~g~~~~~~~~di~i~ 82 (122)
T PRK14659 4 GIGTDIVYIPRI-LNLLKKFGNKFLNRVFSEKEIEDSLKYTSQEARARHFAKRFAAKEAYVKALGTGFGRGIKMKDISVY 82 (122)
T ss_pred EEEeeEEEehHH-HHHHHHhhHHHHHhcCCHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhccCcCcCccccEEEEE
Confidence 489999998763 21 12468999999999999875433234678899999999999999999986 2347999998
Q ss_pred ecCCC-------------cccEEeecCCCeEEEEee
Q 025417 230 ARVVK-------------MGGFHHFDTQHSEVKLVF 252 (253)
Q Consensus 230 ~~~~~-------------~~~~~~~~~~~~~~~~~~ 252 (253)
.++.+ ...+|++|+++|+++++.
T Consensus 83 ~~~~g~P~v~l~~~~~~~~i~vSiSh~~~ya~A~vi 118 (122)
T PRK14659 83 NDLYGKPQITVSKSNIDHKIELSLSDDGDYAIAFVV 118 (122)
T ss_pred ECCCCCeEEEECCcccccEEEEEEEcCCCcEEEEEE
Confidence 77654 224899999999999874
No 8
>TIGR00556 pantethn_trn phosphopantethiene--protein transferase domain. This alignment models a domain active in transferring the phophopantethiene prosthetic group to its attachment site on enzymes and carrier proteins. Many members of this family are small proteins that act on the acyl carrier protein involved in fatty acid biosynthesis. Some members are domains of larger proteins involved specialized pathways for the synthesis of unusual molecules including polyketides, atypical fatty acids, and antibiotics.
Probab=99.50 E-value=1.3e-13 Score=109.22 Aligned_cols=96 Identities=29% Similarity=0.460 Sum_probs=75.5
Q ss_pred cccccchhHHHHhhhhhHH----HHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccCCCCC--CCCCceEE
Q 025417 154 VPIGIDVEEKQRRLKNKIL----AFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS--AAPFNTFT 227 (253)
Q Consensus 154 ~~VGVDIE~~~~~~~~~~~----~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~--~~~l~~~~ 227 (253)
..||||||.+.+. .+.. .+++++||++|++.+...+. ..+...|+..|++|||++|++|.|+. ..+++++.
T Consensus 3 ~~iGiDIe~i~~~--~~~~~~~~~~~~~~~~~~E~~~~~~~~~-~~~~~~~~~~wsaKEA~~Ka~g~g~~~~~~~~~~~~ 79 (128)
T TIGR00556 3 VGIGIDIVEIKRI--AEQVERSGTFAERFFTPSEIEDYCKLSP-KSQTESLAGRWAAKEAFIKALGKGISLGELLFTDIE 79 (128)
T ss_pred cceeeeEEEehHH--HHHHHhhhhHHHHcCCHHHHHHHHhCCh-hHHHHHHHHHHHHHHHHHHHhccCcCCCCCccceEE
Confidence 5799999998763 2233 67999999999998877653 33566899999999999999999986 23688899
Q ss_pred EEecCCCc--------------------ccEEeecCCCeEEEEee
Q 025417 228 IRARVVKM--------------------GGFHHFDTQHSEVKLVF 252 (253)
Q Consensus 228 i~~~~~~~--------------------~~~~~~~~~~~~~~~~~ 252 (253)
|...+.+. ..+|++|+..++++.++
T Consensus 80 i~~~~~g~p~~~l~~~~~~~~~~~~~~~~~lSish~~~~a~a~~i 124 (128)
T TIGR00556 80 IVKDLKGAPRVCLIGEAAKDAEKLGVCSVHVSISHDKEYAAAQVI 124 (128)
T ss_pred EEeCCCCCcEEEECHHHHHHHHHcCCCeEEEEEEcCCCcEEEEEE
Confidence 88776542 25889999999888763
No 9
>PRK14656 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.48 E-value=2.1e-13 Score=108.04 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=74.0
Q ss_pred ccccchhHHHHhh---hhhHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccCCCCCC-CCCceEEEEe
Q 025417 155 PIGIDVEEKQRRL---KNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSA-APFNTFTIRA 230 (253)
Q Consensus 155 ~VGVDIE~~~~~~---~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~-~~l~~~~i~~ 230 (253)
.|||||+.+.+-. ......+++++||++|++++...+. ..+.|+..|++|||++||+|+|+.. ..++++++..
T Consensus 4 giGiDIv~i~Ri~~~~~~~~~~f~~rift~~E~~~~~~~~~---~~~~~a~rwAaKEA~~KAlg~g~~~~~~~~diei~~ 80 (126)
T PRK14656 4 GTGVDIVDISRFERFVDEGNVALLERIFTPHEQEYCAGKKH---SAQHYALRFAAKEAFLKALGTGLRDGISWHDMEVVN 80 (126)
T ss_pred EEeeeEEEchHHHHHHhhhhhHHHHHhCCHHHHHHHHcCCc---HHHHHHHHhHHHHHHHHHhccCCCCCceeeEEEEEE
Confidence 4899999887621 1123568999999999999987653 3567999999999999999999862 3567788776
Q ss_pred cCCC--------------------cccEEeecCCCeEEEEee
Q 025417 231 RVVK--------------------MGGFHHFDTQHSEVKLVF 252 (253)
Q Consensus 231 ~~~~--------------------~~~~~~~~~~~~~~~~~~ 252 (253)
++.+ ...||++|+.+|+++++.
T Consensus 81 ~~~g~P~v~l~g~~~~~~~~~~~~~i~vSiSH~~~~a~A~vi 122 (126)
T PRK14656 81 DQLGKPELRLYGRALELFAQAGLSKTFLSLSHDGGCAVAMVV 122 (126)
T ss_pred CCCCCeEEEECHHHHHHHHHcCCCeEEEEEEcCCCcEEEEEE
Confidence 6544 235899999999999874
No 10
>PRK14660 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.44 E-value=8e-13 Score=104.60 Aligned_cols=95 Identities=23% Similarity=0.308 Sum_probs=74.7
Q ss_pred ccccchhHHHHhh---hhhHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccCCCCC-CCCCceEEEEe
Q 025417 155 PIGIDVEEKQRRL---KNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS-AAPFNTFTIRA 230 (253)
Q Consensus 155 ~VGVDIE~~~~~~---~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~-~~~l~~~~i~~ 230 (253)
.|||||..+.+-- ......+++++||++|++.+.... +....+...|++|||++||+|+|+. ...+++++|..
T Consensus 4 giG~DIv~i~Ri~~~~~~~~~~fl~rift~~E~~~~~~~~---~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~diei~~ 80 (125)
T PRK14660 4 GTGVDIVEVERIARSIERHGDRFLRRIYTPGEIAYCTSKA---NRAERLAARFAAKEAVMKAIGTGLREGVRWTDFEVCR 80 (125)
T ss_pred EEeEeEEEcHHHHHHHHHhhhHHHHHhCCHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHhccCcCCCccceEEEEEE
Confidence 4899998877621 111246899999999999987543 2567888999999999999999985 25789999988
Q ss_pred cCCC--------------------cccEEeecCCCeEEEEee
Q 025417 231 RVVK--------------------MGGFHHFDTQHSEVKLVF 252 (253)
Q Consensus 231 ~~~~--------------------~~~~~~~~~~~~~~~~~~ 252 (253)
++.+ ...||++|+.+|+++++.
T Consensus 81 ~~~G~P~v~l~g~~~~~~~~~~~~~i~lSiSH~~~~A~A~vi 122 (125)
T PRK14660 81 DERGRPTVRLHGRAAEIAAALGATRIHLSLSHTQEYAVAQVI 122 (125)
T ss_pred CCCCCceEEEChHHHHHHHHcCCCeEEEEEEcCCCcEEEEEE
Confidence 7654 235999999999999874
No 11
>TIGR00516 acpS holo-[acyl-carrier-protein] synthase. Formerly dpj. This enzyme adds the prosthetic group, phosphopantethiene, to the acyl carrier protein (ACP) apo-enzyme to generate the holo-enzyme. Related phosphopantethiene--protein transferases also exist. There is an orthologous domain in eukaryotic proteins.
Probab=99.43 E-value=7.9e-13 Score=104.06 Aligned_cols=94 Identities=27% Similarity=0.365 Sum_probs=75.2
Q ss_pred ccccchhHHHHhhhhh----HHHHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccCCCCC-CCCCceEEEE
Q 025417 155 PIGIDVEEKQRRLKNK----ILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS-AAPFNTFTIR 229 (253)
Q Consensus 155 ~VGVDIE~~~~~~~~~----~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~-~~~l~~~~i~ 229 (253)
.||+||..+.+ ...- ...+++++||++|++.+...+. ..+.+...|++|||++||+|+|+. ...+++++|.
T Consensus 3 giG~DIv~i~R-i~~~~~~~~~~f~~ri~t~~E~~~~~~~~~---~~~~lA~rwAaKEA~~KAlg~g~~~~~~~~diei~ 78 (121)
T TIGR00516 3 GIGLDIVEIAR-IESMAGRQKMRFAERILSRSELDQYKELSE---KRKFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIR 78 (121)
T ss_pred EEEEeEEEHHH-HHHHHHhcccchHHHcCCHHHHHHHHhcCc---HHHHHHHHhHHHHHHHHHhccccCCCccceEEEEE
Confidence 48999988876 2211 2368999999999999987663 467788999999999999999985 2467999998
Q ss_pred ecCCCc-----------------ccEEeecCCCeEEEEee
Q 025417 230 ARVVKM-----------------GGFHHFDTQHSEVKLVF 252 (253)
Q Consensus 230 ~~~~~~-----------------~~~~~~~~~~~~~~~~~ 252 (253)
.++.+. ..||++|+.+|+++++.
T Consensus 79 ~~~~G~P~v~~~~~~~~~~~~~~i~vSiSH~~~~A~A~vi 118 (121)
T TIGR00516 79 KDQNGKPLITLSYIICTKLSIAAVHVSITHTKEYAAAQVV 118 (121)
T ss_pred ECCCcCeEEEEcHHHHHHcCCCEEEEEEEcCCCcEEEEEE
Confidence 776542 35899999999999874
No 12
>PRK14658 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.43 E-value=6.2e-13 Score=103.55 Aligned_cols=94 Identities=21% Similarity=0.198 Sum_probs=73.1
Q ss_pred ccccchhHHHHhhhhhHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccCCCCCCCCCceEEEEecCCC
Q 025417 155 PIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVK 234 (253)
Q Consensus 155 ~VGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~~~l~~~~i~~~~~~ 234 (253)
.|||||..+.+ ....-..+++++||++|++.+........+.+.+...|++|||+.||+|+|+. +++++|..++.+
T Consensus 4 ~IGiDIvei~R-i~~~~~~Fl~Rilt~~E~~~~~~~~~~~~~~~~lAgRfAaKEA~~KAlgtg~~---~~dieI~~~~~G 79 (115)
T PRK14658 4 VHGIDIIEWNR-EELNNPLFAKRILIDNELEYYFQLNSSREKKRYLASVFACKEAVMKALKLKYG---YGDILILKTENQ 79 (115)
T ss_pred eEEEEEEEehH-HhhhChhHHHHcCCHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhCCCCC---ceEEEEEECCCC
Confidence 58999988876 22223478999999999999875431122456778899999999999999974 789999877553
Q ss_pred -----------cccEEeecCCCeEEEEee
Q 025417 235 -----------MGGFHHFDTQHSEVKLVF 252 (253)
Q Consensus 235 -----------~~~~~~~~~~~~~~~~~~ 252 (253)
...||++|+++++++++.
T Consensus 80 ~p~~~~~~~~~~i~lSISH~~~~AiA~vI 108 (115)
T PRK14658 80 RQVYLNKILIKELELSISYTETYIVASVV 108 (115)
T ss_pred CeEEEecCCCcEEEEEEEcCCCeEEEEEE
Confidence 246999999999999864
No 13
>PRK14661 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.42 E-value=5.4e-13 Score=109.57 Aligned_cols=90 Identities=27% Similarity=0.364 Sum_probs=72.2
Q ss_pred ccccchhHHHHhhhhhHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccCCCCCCCCCceEEEEecCC-
Q 025417 155 PIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVV- 233 (253)
Q Consensus 155 ~VGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~~~l~~~~i~~~~~- 233 (253)
.|||||+.+.+- . ..+++++||++|++.+.+.++ +...|+..|++|||++||+|+|+....++++.|....+
T Consensus 4 GIGiDIveI~Ri-~---e~Fl~RifT~~E~~~~~~~~~---~~~~lAgrwAaKEAv~KAlGtGl~~vsf~DIEI~~~~G~ 76 (169)
T PRK14661 4 GVGIDVLEVERV-P---EKFAERILGESEKRLFLTRKR---RREFIAGRFALKEAFFKALGTGLNGHSFTDVEFLESNGK 76 (169)
T ss_pred EEEEeEEEEEch-H---HHHHHHcCCHHHHHHHHhccc---hhhhHHHHhHHHHHHHHHccCCcCCccceEEEEEcCCCC
Confidence 489999998763 2 368999999999999876442 56778899999999999999999767899999974222
Q ss_pred ------------CcccEEeecCCCeEEEEee
Q 025417 234 ------------KMGGFHHFDTQHSEVKLVF 252 (253)
Q Consensus 234 ------------~~~~~~~~~~~~~~~~~~~ 252 (253)
....||++|+. ++++++.
T Consensus 77 P~v~l~g~~~~~~~i~VSISHd~-yAiA~VI 106 (169)
T PRK14661 77 PVLCVHKDFGFFNYAHVSLSHDR-FAVALVV 106 (169)
T ss_pred eEEEEccccCccceEEEEEeccc-cEEEEEE
Confidence 12458999998 9999864
No 14
>PRK14657 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.40 E-value=1.3e-12 Score=103.18 Aligned_cols=92 Identities=25% Similarity=0.285 Sum_probs=71.9
Q ss_pred ccccchhHHHHhhhhh----HHHHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccCCCCC-CCCCceEEEE
Q 025417 155 PIGIDVEEKQRRLKNK----ILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS-AAPFNTFTIR 229 (253)
Q Consensus 155 ~VGVDIE~~~~~~~~~----~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~-~~~l~~~~i~ 229 (253)
.|||||+.+.+- ..- ...+++++||++|++.+...+ ...+...|++|||++|++|+|+. ...+++++|.
T Consensus 4 giGvDIv~i~ri-~~~~~~~~~~f~~rift~~E~~~~~~~~-----~~~lA~rwAaKEA~~KAlg~g~~~~~~~~diei~ 77 (123)
T PRK14657 4 GLGIDITELDRI-AKALERFGDRFARRILHPAELAAMPAAP-----VAFLAGRFAAKEAAVKALGTGFSQGIGPRDIEVG 77 (123)
T ss_pred EEEEeEEEcHHH-HHHHHhcChhHHHhCCCHHHHHHHHcCc-----HHHHHHHHHHHHHHHHHhccCcCCCCCceeEEEE
Confidence 489999998762 211 135889999999999987642 35666789999999999999985 2456999988
Q ss_pred ecCCC--------------------cccEEeecCCCeEEEEee
Q 025417 230 ARVVK--------------------MGGFHHFDTQHSEVKLVF 252 (253)
Q Consensus 230 ~~~~~--------------------~~~~~~~~~~~~~~~~~~ 252 (253)
.++.+ ...||++|++.|+++++.
T Consensus 78 ~~~~g~P~v~l~g~~~~~~~~~~~~~~~vSiSH~~~~aiA~vi 120 (123)
T PRK14657 78 VLPAGAPQLVLHGKALARAEALGATSTHVSLTHGRDTAAAVVV 120 (123)
T ss_pred ECCCCCcEEEEChHHHHHHHHcCCCeEEEEEEcCCCcEEEEEE
Confidence 77654 236899999999999873
No 15
>COG0736 AcpS Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]
Probab=99.39 E-value=1.6e-12 Score=102.51 Aligned_cols=94 Identities=22% Similarity=0.348 Sum_probs=75.9
Q ss_pred ccccchhHHHHhhhhhH----HHHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccCCCCCC-CCCceEEEE
Q 025417 155 PIGIDVEEKQRRLKNKI----LAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSA-APFNTFTIR 229 (253)
Q Consensus 155 ~VGVDIE~~~~~~~~~~----~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~-~~l~~~~i~ 229 (253)
.|||||..+.+ ..... ..+++++||+.|++....... +...+...|++|||+.||+|+|+.. ..++++.|.
T Consensus 4 gIG~DiveI~R-i~~~~~r~g~~F~erilt~~E~~~~~~~~~---~~~~lAgrfAaKEA~~KAlgtgi~~~~~~~diei~ 79 (127)
T COG0736 4 GIGIDIVEIER-IEKALERFGERFAERILTEEELEYYEKLKS---RAEFLAGRFAAKEAVSKALGTGIGKGVSFKDIEIL 79 (127)
T ss_pred EEeeeEEEeHH-HHHHHhhccchHHHHhCCHHHHHHHHhcCC---chhHHHHHHHHHHHHHHHhccCcccceeeeeEEEE
Confidence 58999988775 22111 478999999999999998764 2567778999999999999999984 578999988
Q ss_pred ecCCC--------------------cccEEeecCCCeEEEEee
Q 025417 230 ARVVK--------------------MGGFHHFDTQHSEVKLVF 252 (253)
Q Consensus 230 ~~~~~--------------------~~~~~~~~~~~~~~~~~~ 252 (253)
.++.+ ...||++|+.+|+++++.
T Consensus 80 ~d~~g~P~v~~~~~~~~~~~~~~~~~i~lSISh~~~yA~A~vi 122 (127)
T COG0736 80 NDELGKPTVRLSGEAAKALEKLGVANIHLSISHDRDYAIAVVI 122 (127)
T ss_pred EcCCCCcEEEECHHHHHHHHhcCCceEEEEEEcCCCeEEEEEE
Confidence 77533 267899999999999874
No 16
>PRK00070 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.30 E-value=1.2e-11 Score=97.51 Aligned_cols=94 Identities=23% Similarity=0.277 Sum_probs=73.3
Q ss_pred ccccchhHHHHhhhh----hHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccCCCCCC-CCCceEEEE
Q 025417 155 PIGIDVEEKQRRLKN----KILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSA-APFNTFTIR 229 (253)
Q Consensus 155 ~VGVDIE~~~~~~~~----~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~-~~l~~~~i~ 229 (253)
.|||||+.+.+- .. ....+++++||++|++.+.... ++.+.+...|++|||++|++|.|+.. ..++++.|.
T Consensus 4 giGiDi~~i~r~-~~~~~~~~~~~~~r~l~~~E~~~~~~~~---~~~~~la~r~aaKEA~~Kalg~~~~~~~~~~~i~i~ 79 (126)
T PRK00070 4 GIGIDIVEIERI-EKALERTGDRFAERVLTPKERAKFKSGK---RPAEFLAGRFAAKEAFSKALGTGIGKGVSFRDIEVL 79 (126)
T ss_pred EEEEeEEEhHHH-HHHHHhcchhHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHhccCcccceeeeEEEEE
Confidence 489999998762 21 1247899999999999995432 35678889999999999999999862 357888887
Q ss_pred ecCCC--------------------cccEEeecCCCeEEEEee
Q 025417 230 ARVVK--------------------MGGFHHFDTQHSEVKLVF 252 (253)
Q Consensus 230 ~~~~~--------------------~~~~~~~~~~~~~~~~~~ 252 (253)
.++.+ ...||++|+.+++++++.
T Consensus 80 ~~~~G~P~l~l~g~~~~~~~~~~~~~~~iSISH~~~~A~A~vi 122 (126)
T PRK00070 80 NDELGKPIVRLSGEAAERLEKLGGARIHLSISHDGDYAVAFVI 122 (126)
T ss_pred ECCCCCcEEEEChHHHHHHHHcCCCEEEEEEEcCCCcEEEEEE
Confidence 76533 246899999999999874
No 17
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.29 E-value=2.9e-11 Score=94.42 Aligned_cols=92 Identities=23% Similarity=0.370 Sum_probs=69.3
Q ss_pred cchhHHHHhhhhhHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccCCCCC-CCCCceEEEEecCCC--
Q 025417 158 IDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS-AAPFNTFTIRARVVK-- 234 (253)
Q Consensus 158 VDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~-~~~l~~~~i~~~~~~-- 234 (253)
|+|+++.......-..+++++||++|+++...... ..+.+...|++|||++||+|+|+. ...+++++|..++.+
T Consensus 4 v~i~Ri~~~~~~~~~~f~~rift~~E~~~~~~~~~---~~~~lAgrfAaKEA~~KAlg~g~~~~i~~~dieI~~~~~G~P 80 (116)
T PRK14663 4 VDLERIEKAYNRYGVKFLEKILTPEEIELCLQKPQ---PVASIAGRFAAKEAVVKALGTGFSQGVHWKSFAILNDAAGRP 80 (116)
T ss_pred EEHHHHHHHHHhhchHHHHHhCCHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHccCCCCCceeeEEEEEECCCCCc
Confidence 35555554221112468899999999999876543 457888899999999999999984 356899999876544
Q ss_pred --------------cccEEeecCCCeEEEEee
Q 025417 235 --------------MGGFHHFDTQHSEVKLVF 252 (253)
Q Consensus 235 --------------~~~~~~~~~~~~~~~~~~ 252 (253)
...||++|+++|+++++.
T Consensus 81 ~i~l~g~~~~~~~~~i~vSiSH~~~~a~A~vi 112 (116)
T PRK14663 81 FVKVIDDGCLPPGCVIKISISHDRHSAVATAL 112 (116)
T ss_pred EEEEchhHhhcCCCEEEEEEEcCCCeEEEEEE
Confidence 246899999999999874
No 18
>PRK14662 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.28 E-value=2e-11 Score=95.89 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=69.9
Q ss_pred ccccchhHHHHhhhh----hHHHHHHhcCCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhccCCCCCCCCCceEEEEe
Q 025417 155 PIGIDVEEKQRRLKN----KILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRA 230 (253)
Q Consensus 155 ~VGVDIE~~~~~~~~----~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~~~l~~~~i~~ 230 (253)
.||+||..+.+ ... .-..+++++||++|++......+ ....+...|++|||++||+|+|+ .+++++|..
T Consensus 4 gIG~DIv~i~R-i~~~~~r~~~~Fl~Ri~t~~E~~~~~~~~~---~~~~lAgrfAaKEA~~KAlg~~~---~~~diei~~ 76 (120)
T PRK14662 4 AIGHDLVEIAR-IRRVLERHGERALERLFHPEELAYCLAKAD---PAPSLAARFAAKEAFQKCWPESH---GWREVWVER 76 (120)
T ss_pred EEEeeeEEhHH-HHHHHHhhhhHHHHHcCCHHHHHHHHhcCC---cchhhhhHhHHHHHHHHHhcCCC---CceEEEEEc
Confidence 48999988776 221 12468899999999999876443 35677789999999999999985 478999876
Q ss_pred cCCC------------------cccEEeecCCCeEEEEee
Q 025417 231 RVVK------------------MGGFHHFDTQHSEVKLVF 252 (253)
Q Consensus 231 ~~~~------------------~~~~~~~~~~~~~~~~~~ 252 (253)
+.+. ...||++|+.+|+++++.
T Consensus 77 ~~G~P~v~l~g~~~~~~~~~~~~~~lSiSH~~~~A~A~vi 116 (120)
T PRK14662 77 EGARPVLGFAPKIAARMEEEGWVAHLSLSHEKEHALAVVV 116 (120)
T ss_pred CCCCcEEEECHHHHHHHHhcCCeEEEEEecCCCeEEEEEE
Confidence 5331 225899999999999874
No 19
>PRK14658 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.21 E-value=9e-11 Score=91.42 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=69.7
Q ss_pred HhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEeeCCCCCceeecCCCCCCCCCCeEEEEc
Q 025417 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNIS 140 (253)
Q Consensus 61 ~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g~~p~~i~i~~~~~GkP~l~~~~~~~~~~~~~~fSIS 140 (253)
+.+.|+++|++.+...+...++.+||+||.++|+++... .+.|+...++++.+++.|+|++.... +...+++|||
T Consensus 23 l~Rilt~~E~~~~~~~~~~~~~~~~lAgRfAaKEA~~KA-lgtg~~~~dieI~~~~~G~p~~~~~~----~~~~i~lSIS 97 (115)
T PRK14658 23 AKRILIDNELEYYFQLNSSREKKRYLASVFACKEAVMKA-LKLKYGYGDILILKTENQRQVYLNKI----LIKELELSIS 97 (115)
T ss_pred HHHcCCHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-hCCCCCceEEEEEECCCCCeEEEecC----CCcEEEEEEE
Confidence 458999999999986644456789999999999999988 46677889999999999999986422 2357899999
Q ss_pred ccccceeEEE
Q 025417 141 HTSSLVACGV 150 (253)
Q Consensus 141 Hs~~~v~~a~ 150 (253)
|+++++++.+
T Consensus 98 H~~~~AiA~v 107 (115)
T PRK14658 98 YTETYIVASV 107 (115)
T ss_pred cCCCeEEEEE
Confidence 9999976543
No 20
>PRK00070 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.12 E-value=2.8e-10 Score=89.76 Aligned_cols=86 Identities=20% Similarity=0.284 Sum_probs=65.4
Q ss_pred HhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCC----CCCCceeEeeCCCCCceeecCCCC-----CCC
Q 025417 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQ----VNPRSLKFKKTIYGKPEVDWENGD-----KWC 131 (253)
Q Consensus 61 ~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g----~~p~~i~i~~~~~GkP~l~~~~~~-----~~~ 131 (253)
+.+.|+++|++++. ...++.+|+++|.++|+++.+++ +.| +.+.+++|.++++|+|++...+.. ..+
T Consensus 27 ~~r~l~~~E~~~~~---~~~~~~~~la~r~aaKEA~~Kal-g~~~~~~~~~~~i~i~~~~~G~P~l~l~g~~~~~~~~~~ 102 (126)
T PRK00070 27 AERVLTPKERAKFK---SGKRPAEFLAGRFAAKEAFSKAL-GTGIGKGVSFRDIEVLNDELGKPIVRLSGEAAERLEKLG 102 (126)
T ss_pred HHHcCCHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHh-ccCcccceeeeEEEEEECCCCCcEEEEChHHHHHHHHcC
Confidence 45799999999983 35667899999999999998883 333 346889999999999999732100 001
Q ss_pred CCCeEEEEcccccceeEEE
Q 025417 132 PPPLHFNISHTSSLVACGV 150 (253)
Q Consensus 132 ~~~~~fSISHs~~~v~~a~ 150 (253)
...+++||||+++++++.+
T Consensus 103 ~~~~~iSISH~~~~A~A~v 121 (126)
T PRK00070 103 GARIHLSISHDGDYAVAFV 121 (126)
T ss_pred CCEEEEEEEcCCCcEEEEE
Confidence 3568999999999987654
No 21
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.83 E-value=3.3e-08 Score=77.86 Aligned_cols=87 Identities=10% Similarity=0.257 Sum_probs=67.7
Q ss_pred HhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCC----CCCCceeEeeCCCCCceeecCCCCCCCCCCeE
Q 025417 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQ----VNPRSLKFKKTIYGKPEVDWENGDKWCPPPLH 136 (253)
Q Consensus 61 ~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g----~~p~~i~i~~~~~GkP~l~~~~~~~~~~~~~~ 136 (253)
+.+.|+++|+..+.++.....+.+++++|.++|+++.+. .+.| +.+.++++.++++|+|++...+.. ....++
T Consensus 27 ~~r~ft~~E~~~~~~~~~~~~~~~~la~rwaaKEA~~KA-lg~g~~~~~~~~di~i~~~~~g~P~v~l~~~~--~~~~i~ 103 (122)
T PRK14659 27 LNRVFSEKEIEDSLKYTSQEARARHFAKRFAAKEAYVKA-LGTGFGRGIKMKDISVYNDLYGKPQITVSKSN--IDHKIE 103 (122)
T ss_pred HHhcCCHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-hccCcCcCccccEEEEEECCCCCeEEEECCcc--cccEEE
Confidence 467999999999876655556888999999999998877 3333 446889999999999999753211 125789
Q ss_pred EEEcccccceeEEE
Q 025417 137 FNISHTSSLVACGV 150 (253)
Q Consensus 137 fSISHs~~~v~~a~ 150 (253)
+||||+++++++.+
T Consensus 104 vSiSh~~~ya~A~v 117 (122)
T PRK14659 104 LSLSDDGDYAIAFV 117 (122)
T ss_pred EEEEcCCCcEEEEE
Confidence 99999999987544
No 22
>PRK14660 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.83 E-value=2e-08 Score=79.47 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=66.0
Q ss_pred HhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcC----CCCCCceeEeeCCCCCceeecCCC-----CCCC
Q 025417 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNC----QVNPRSLKFKKTIYGKPEVDWENG-----DKWC 131 (253)
Q Consensus 61 ~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~----g~~p~~i~i~~~~~GkP~l~~~~~-----~~~~ 131 (253)
+.+.|+++|++.+... .++.+++++|.++|+++.+.+ +. ++.+.++++.+++.|+|++...+. ...+
T Consensus 27 l~rift~~E~~~~~~~---~~~~~~lAgrfAaKEA~~KAl-g~g~~~~~~~~diei~~~~~G~P~v~l~g~~~~~~~~~~ 102 (125)
T PRK14660 27 LRRIYTPGEIAYCTSK---ANRAERLAARFAAKEAVMKAI-GTGLREGVRWTDFEVCRDERGRPTVRLHGRAAEIAAALG 102 (125)
T ss_pred HHHhCCHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHh-ccCcCCCccceEEEEEECCCCCceEEEChHHHHHHHHcC
Confidence 4579999999998643 456889999999999998873 33 356789999999999999964321 0112
Q ss_pred CCCeEEEEcccccceeEEE
Q 025417 132 PPPLHFNISHTSSLVACGV 150 (253)
Q Consensus 132 ~~~~~fSISHs~~~v~~a~ 150 (253)
...+++||||+++++++.+
T Consensus 103 ~~~i~lSiSH~~~~A~A~v 121 (125)
T PRK14660 103 ATRIHLSLSHTQEYAVAQV 121 (125)
T ss_pred CCeEEEEEEcCCCcEEEEE
Confidence 3568999999999976544
No 23
>COG0736 AcpS Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]
Probab=98.79 E-value=3e-08 Score=78.33 Aligned_cols=85 Identities=15% Similarity=0.247 Sum_probs=65.0
Q ss_pred HhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCCC----CCCceeEeeCCCCCceeecCCCC-----CCC
Q 025417 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQV----NPRSLKFKKTIYGKPEVDWENGD-----KWC 131 (253)
Q Consensus 61 ~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g~----~p~~i~i~~~~~GkP~l~~~~~~-----~~~ 131 (253)
+.+.|++.|++.+.+.... .+||++|.++|+++... .++|+ ...++++.+++.|+|.+...+.. ...
T Consensus 27 ~erilt~~E~~~~~~~~~~---~~~lAgrfAaKEA~~KA-lgtgi~~~~~~~diei~~d~~g~P~v~~~~~~~~~~~~~~ 102 (127)
T COG0736 27 AERILTEEELEYYEKLKSR---AEFLAGRFAAKEAVSKA-LGTGIGKGVSFKDIEILNDELGKPTVRLSGEAAKALEKLG 102 (127)
T ss_pred HHHhCCHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHH-hccCcccceeeeeEEEEEcCCCCcEEEECHHHHHHHHhcC
Confidence 3478999999999877443 89999999999999888 33443 45789999999999999864210 001
Q ss_pred CCCeEEEEcccccceeEE
Q 025417 132 PPPLHFNISHTSSLVACG 149 (253)
Q Consensus 132 ~~~~~fSISHs~~~v~~a 149 (253)
...+++||||+.+++++.
T Consensus 103 ~~~i~lSISh~~~yA~A~ 120 (127)
T COG0736 103 VANIHLSISHDRDYAIAV 120 (127)
T ss_pred CceEEEEEEcCCCeEEEE
Confidence 135999999999997543
No 24
>PRK14662 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.79 E-value=2.8e-08 Score=78.05 Aligned_cols=85 Identities=14% Similarity=0.085 Sum_probs=64.7
Q ss_pred HhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEeeCCCCCceeecCCCC----CCCCCCeE
Q 025417 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENGD----KWCPPPLH 136 (253)
Q Consensus 61 ~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g~~p~~i~i~~~~~GkP~l~~~~~~----~~~~~~~~ 136 (253)
+.+.|+++|++.+... .++.+++++|.++|+++... .+.|+.+.++++.++ .|||++...+.. ......++
T Consensus 27 l~Ri~t~~E~~~~~~~---~~~~~~lAgrfAaKEA~~KA-lg~~~~~~diei~~~-~G~P~v~l~g~~~~~~~~~~~~~~ 101 (120)
T PRK14662 27 LERLFHPEELAYCLAK---ADPAPSLAARFAAKEAFQKC-WPESHGWREVWVERE-GARPVLGFAPKIAARMEEEGWVAH 101 (120)
T ss_pred HHHcCCHHHHHHHHhc---CCcchhhhhHhHHHHHHHHH-hcCCCCceEEEEEcC-CCCcEEEECHHHHHHHHhcCCeEE
Confidence 4579999999988643 34578999999999999887 456788999999886 899999542210 00123679
Q ss_pred EEEcccccceeEEE
Q 025417 137 FNISHTSSLVACGV 150 (253)
Q Consensus 137 fSISHs~~~v~~a~ 150 (253)
+||||+++++++.+
T Consensus 102 lSiSH~~~~A~A~v 115 (120)
T PRK14662 102 LSLSHEKEHALAVV 115 (120)
T ss_pred EEEecCCCeEEEEE
Confidence 99999999976544
No 25
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.78 E-value=4.2e-08 Score=76.62 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=64.5
Q ss_pred HhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcC----CCCCCceeEeeCCCCCceeecCCCC-CCCCCCe
Q 025417 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNC----QVNPRSLKFKKTIYGKPEVDWENGD-KWCPPPL 135 (253)
Q Consensus 61 ~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~----g~~p~~i~i~~~~~GkP~l~~~~~~-~~~~~~~ 135 (253)
+.+.|+++|+..+.... +..++++||.++|+++...+ +. ++.+.+++|.+++.|+|++...+.. ......+
T Consensus 21 ~~rift~~E~~~~~~~~---~~~~~lAgrfAaKEA~~KAl-g~g~~~~i~~~dieI~~~~~G~P~i~l~g~~~~~~~~~i 96 (116)
T PRK14663 21 LEKILTPEEIELCLQKP---QPVASIAGRFAAKEAVVKAL-GTGFSQGVHWKSFAILNDAAGRPFVKVIDDGCLPPGCVI 96 (116)
T ss_pred HHHhCCHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHH-ccCCCCCceeeEEEEEECCCCCcEEEEchhHhhcCCCEE
Confidence 35799999999886443 35689999999999998773 33 3457889999999999999643210 0013468
Q ss_pred EEEEcccccceeEEE
Q 025417 136 HFNISHTSSLVACGV 150 (253)
Q Consensus 136 ~fSISHs~~~v~~a~ 150 (253)
++||||+++++++.+
T Consensus 97 ~vSiSH~~~~a~A~v 111 (116)
T PRK14663 97 KISISHDRHSAVATA 111 (116)
T ss_pred EEEEEcCCCeEEEEE
Confidence 999999999976544
No 26
>TIGR00516 acpS holo-[acyl-carrier-protein] synthase. Formerly dpj. This enzyme adds the prosthetic group, phosphopantethiene, to the acyl carrier protein (ACP) apo-enzyme to generate the holo-enzyme. Related phosphopantethiene--protein transferases also exist. There is an orthologous domain in eukaryotic proteins.
Probab=98.77 E-value=5.1e-08 Score=76.70 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=65.1
Q ss_pred HhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcC----CCCCCceeEeeCCCCCceeecCCC--CCCCCCC
Q 025417 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNC----QVNPRSLKFKKTIYGKPEVDWENG--DKWCPPP 134 (253)
Q Consensus 61 ~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~----g~~p~~i~i~~~~~GkP~l~~~~~--~~~~~~~ 134 (253)
+.+.|++.|+..+.... ++.+++++|.++|+++...+ +. ++...++++.++++|+|++..... ...+...
T Consensus 26 ~~ri~t~~E~~~~~~~~---~~~~~lA~rwAaKEA~~KAl-g~g~~~~~~~~diei~~~~~G~P~v~~~~~~~~~~~~~~ 101 (121)
T TIGR00516 26 AERILSRSELDQYKELS---EKRKFLAGRFAAKEAFSKAF-GTGIGRQLSFQDIEIRKDQNGKPLITLSYIICTKLSIAA 101 (121)
T ss_pred HHHcCCHHHHHHHHhcC---cHHHHHHHHhHHHHHHHHHh-ccccCCCccceEEEEEECCCcCeEEEEcHHHHHHcCCCE
Confidence 45799999999887543 46899999999999998873 33 345688999999999999963210 0012356
Q ss_pred eEEEEcccccceeEEE
Q 025417 135 LHFNISHTSSLVACGV 150 (253)
Q Consensus 135 ~~fSISHs~~~v~~a~ 150 (253)
+++||||+++++++.+
T Consensus 102 i~vSiSH~~~~A~A~v 117 (121)
T TIGR00516 102 VHVSITHTKEYAAAQV 117 (121)
T ss_pred EEEEEEcCCCcEEEEE
Confidence 8999999999976544
No 27
>PRK14657 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.60 E-value=2.3e-07 Score=73.19 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=64.0
Q ss_pred HhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcC----CCCCCceeEeeCCCCCceeecCCC-----CCCC
Q 025417 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNC----QVNPRSLKFKKTIYGKPEVDWENG-----DKWC 131 (253)
Q Consensus 61 ~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~----g~~p~~i~i~~~~~GkP~l~~~~~-----~~~~ 131 (253)
+.+.++++|++.+... ..+++++|.++|+++.+.+ +. ++.+.++++.++++|+|++...+. ...+
T Consensus 27 ~~rift~~E~~~~~~~-----~~~~lA~rwAaKEA~~KAl-g~g~~~~~~~~diei~~~~~g~P~v~l~g~~~~~~~~~~ 100 (123)
T PRK14657 27 ARRILHPAELAAMPAA-----PVAFLAGRFAAKEAAVKAL-GTGFSQGIGPRDIEVGVLPAGAPQLVLHGKALARAEALG 100 (123)
T ss_pred HHhCCCHHHHHHHHcC-----cHHHHHHHHHHHHHHHHHh-ccCcCCCCCceeEEEEECCCCCcEEEEChHHHHHHHHcC
Confidence 4579999999998643 4789999999999988773 32 345689999999999999953211 0113
Q ss_pred CCCeEEEEcccccceeEEE
Q 025417 132 PPPLHFNISHTSSLVACGV 150 (253)
Q Consensus 132 ~~~~~fSISHs~~~v~~a~ 150 (253)
...+++||||+++++++.+
T Consensus 101 ~~~~~vSiSH~~~~aiA~v 119 (123)
T PRK14657 101 ATSTHVSLTHGRDTAAAVV 119 (123)
T ss_pred CCeEEEEEEcCCCcEEEEE
Confidence 4578999999999976544
No 28
>PRK14656 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.53 E-value=5e-07 Score=71.54 Aligned_cols=86 Identities=12% Similarity=0.163 Sum_probs=64.4
Q ss_pred HhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcC----CCCCCceeEeeCCCCCceeecCCC-----CCCC
Q 025417 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNC----QVNPRSLKFKKTIYGKPEVDWENG-----DKWC 131 (253)
Q Consensus 61 ~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~----g~~p~~i~i~~~~~GkP~l~~~~~-----~~~~ 131 (253)
+.+.|+++|++.+.... +..+++++|.++|+++.+.+ +. ++...++++.+++.|+|++..... ...+
T Consensus 27 ~~rift~~E~~~~~~~~---~~~~~~a~rwAaKEA~~KAl-g~g~~~~~~~~diei~~~~~g~P~v~l~g~~~~~~~~~~ 102 (126)
T PRK14656 27 LERIFTPHEQEYCAGKK---HSAQHYALRFAAKEAFLKAL-GTGLRDGISWHDMEVVNDQLGKPELRLYGRALELFAQAG 102 (126)
T ss_pred HHHhCCHHHHHHHHcCC---cHHHHHHHHhHHHHHHHHHh-ccCCCCCceeeEEEEEECCCCCeEEEECHHHHHHHHHcC
Confidence 45799999999997543 34668999999999988773 33 345678999999999999954211 0112
Q ss_pred CCCeEEEEcccccceeEEE
Q 025417 132 PPPLHFNISHTSSLVACGV 150 (253)
Q Consensus 132 ~~~~~fSISHs~~~v~~a~ 150 (253)
...+++||||+++++++.+
T Consensus 103 ~~~i~vSiSH~~~~a~A~v 121 (126)
T PRK14656 103 LSKTFLSLSHDGGCAVAMV 121 (126)
T ss_pred CCeEEEEEEcCCCcEEEEE
Confidence 4578999999999976544
No 29
>PRK14661 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.18 E-value=1.1e-05 Score=66.63 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=61.4
Q ss_pred HHhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcC---CCCCCceeEeeCCCCCceeecCCCCCCCCCCeE
Q 025417 60 QYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNC---QVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLH 136 (253)
Q Consensus 60 ~~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~---g~~p~~i~i~~~~~GkP~l~~~~~~~~~~~~~~ 136 (253)
.+.+.++++|++.+.. ..++.+++++|.++|+++.+.+ +. ++...++++. ++.|+|++...... .....++
T Consensus 19 Fl~RifT~~E~~~~~~---~~~~~~~lAgrwAaKEAv~KAl-GtGl~~vsf~DIEI~-~~~G~P~v~l~g~~-~~~~~i~ 92 (169)
T PRK14661 19 FAERILGESEKRLFLT---RKRRREFIAGRFALKEAFFKAL-GTGLNGHSFTDVEFL-ESNGKPVLCVHKDF-GFFNYAH 92 (169)
T ss_pred HHHHcCCHHHHHHHHh---ccchhhhHHHHhHHHHHHHHHc-cCCcCCccceEEEEE-cCCCCeEEEEcccc-CccceEE
Confidence 3458999999998864 3457889999999999988772 33 3467889997 57999999753211 1125689
Q ss_pred EEEcccccceeEEE
Q 025417 137 FNISHTSSLVACGV 150 (253)
Q Consensus 137 fSISHs~~~v~~a~ 150 (253)
+||||++ ++++.+
T Consensus 93 VSISHd~-yAiA~V 105 (169)
T PRK14661 93 VSLSHDR-FAVALV 105 (169)
T ss_pred EEEeccc-cEEEEE
Confidence 9999999 754433
No 30
>TIGR00556 pantethn_trn phosphopantethiene--protein transferase domain. This alignment models a domain active in transferring the phophopantethiene prosthetic group to its attachment site on enzymes and carrier proteins. Many members of this family are small proteins that act on the acyl carrier protein involved in fatty acid biosynthesis. Some members are domains of larger proteins involved specialized pathways for the synthesis of unusual molecules including polyketides, atypical fatty acids, and antibiotics.
Probab=97.65 E-value=0.0004 Score=54.75 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=63.9
Q ss_pred HhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCC-----CCCCceeEeeCCCCCceeecCCC-----CCC
Q 025417 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQ-----VNPRSLKFKKTIYGKPEVDWENG-----DKW 130 (253)
Q Consensus 61 ~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g-----~~p~~i~i~~~~~GkP~l~~~~~-----~~~ 130 (253)
..+.++++|++...... ...+.+++++|..+|+++.+.+ +.| +...++++..+++|+|++..... +..
T Consensus 26 ~~~~~~~~E~~~~~~~~-~~~~~~~~~~~wsaKEA~~Ka~-g~g~~~~~~~~~~~~i~~~~~g~p~~~l~~~~~~~~~~~ 103 (128)
T TIGR00556 26 AERFFTPSEIEDYCKLS-PKSQTESLAGRWAAKEAFIKAL-GKGISLGELLFTDIEIVKDLKGAPRVCLIGEAAKDAEKL 103 (128)
T ss_pred HHHcCCHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHh-ccCcCCCCCccceEEEEeCCCCCcEEEECHHHHHHHHHc
Confidence 45799999999777653 3456779999999999988772 222 24567899999999999853221 011
Q ss_pred CCCCeEEEEcccccceeEEE
Q 025417 131 CPPPLHFNISHTSSLVACGV 150 (253)
Q Consensus 131 ~~~~~~fSISHs~~~v~~a~ 150 (253)
....++.||||+.+++.+.+
T Consensus 104 ~~~~~~lSish~~~~a~a~~ 123 (128)
T TIGR00556 104 GVCSVHVSISHDKEYAAAQV 123 (128)
T ss_pred CCCeEEEEEEcCCCcEEEEE
Confidence 23467899999999986644
No 31
>PF01648 ACPS: 4'-phosphopantetheinyl transferase superfamily; InterPro: IPR008278 These proteins transfer the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of pp-binding. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP []. This superfamily consists of two subtypes: The ACPS type such as ACPS_ECOLI and the Sfp type such as SFP_BACSU. The structure of the Sfp type is known [], which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion. ; GO: 0000287 magnesium ion binding, 0008897 holo-[acyl-carrier-protein] synthase activity, 0009059 macromolecule biosynthetic process; PDB: 3QMN_S 3GWM_A 3NFD_D 3NE9_C 1FTH_C 1FTE_C 1FTF_B 3HYK_B 2WDY_A 2WDS_A ....
Probab=97.11 E-value=0.0012 Score=50.39 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=64.5
Q ss_pred HhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhc-CC---CCCCceeEeeCCCCCceeec---CCCCCCCCC
Q 025417 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTN-CQ---VNPRSLKFKKTIYGKPEVDW---ENGDKWCPP 133 (253)
Q Consensus 61 ~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~-~g---~~p~~i~i~~~~~GkP~l~~---~~~~~~~~~ 133 (253)
+...++++|+..+..... .++.++++....+|+++-+. .+ .| ....++.+...+.|+|.+.. .........
T Consensus 21 ~~~~~t~~E~~~l~~~~~-~~~~~~~~~~Wt~KEA~~Ka-~g~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (115)
T PF01648_consen 21 AERFFTPEELEWLRSLPS-EERLQAFTLLWTAKEAVYKA-LGLTGSLDLSFREIELHKPPGGRPSLSLWASWIFDGDKIW 98 (115)
T ss_dssp HHHHS-HHHHHHHHCTSS-HHHHHHHHHHHHHHHHHHHH-HTTSTSSTSHGGGEEEEESTTSCEEEEEHHHHHHHHTTTE
T ss_pred HHHhCCHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHHH-hcccCCcccccEEEEEEcCCCCCeEEEEeHHhhhhhcCce
Confidence 346799999999998865 78889999999999999887 34 33 34466788889999998641 000011235
Q ss_pred CeEEEEcccccceeEEE
Q 025417 134 PLHFNISHTSSLVACGV 150 (253)
Q Consensus 134 ~~~fSISHs~~~v~~a~ 150 (253)
.++.++||.++++++.|
T Consensus 99 ~~~~~~~~~~~~~~a~v 115 (115)
T PF01648_consen 99 RFHVSISHDEDYAAAFV 115 (115)
T ss_dssp EEEEEEEEESSEEEEEE
T ss_pred EEEEEEEeCCCEEEEEC
Confidence 68899999999988765
No 32
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=85.02 E-value=2.8 Score=27.19 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=32.4
Q ss_pred cCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEeeCCCCCceee
Q 025417 64 LLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVD 123 (253)
Q Consensus 64 ~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g~~p~~i~i~~~~~GkP~l~ 123 (253)
.|+++|...+-.++.+..+.++| .. .|+ .+..+++|+|.+.
T Consensus 2 fLT~~El~elTG~k~~~~Q~~~L----------~~----~Gi-----~~~~~~~G~p~V~ 42 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSKQIRWL----------RR----NGI-----PFVVRADGRPIVT 42 (47)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHH----------HH----CCC-----eeEECCCCCEEee
Confidence 58999999999998887777665 22 355 4788999999986
No 33
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=78.34 E-value=6.2 Score=40.11 Aligned_cols=104 Identities=21% Similarity=0.293 Sum_probs=68.1
Q ss_pred CCCCCceeecCCCCCCCCCCeEEEEcccccceeEEEccccccccchhHHHHhhhhhHHHHHHhcCCHHHHHHHhcCCCch
Q 025417 115 TIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPE 194 (253)
Q Consensus 115 ~~~GkP~l~~~~~~~~~~~~~~fSISHs~~~v~~a~s~~~~VGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~ 194 (253)
-..|||-- ..+..+-.|.|+.+++-++ +-.-|||.|.+..+ .+-+...+++|.+. +++.+
T Consensus 456 ~a~GKp~~----------G~I~L~A~~~gn~ivIev~-DDG~Gid~ekI~~K------AiErGli~~~~a~~---lSd~E 515 (716)
T COG0643 456 RAAGKPEE----------GTITLSAYHEGNNIVIEVS-DDGAGIDREKIREK------AIERGLITEEEAET---LSDEE 515 (716)
T ss_pred HHcCCCCc----------ceEEEEEEcCCCeEEEEEe-eCCCCCCHHHHHHH------HHHcCCCChHHhcc---CCHHH
Confidence 56788853 5799999999999999998 67779999999764 23345566666442 22222
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCC---------CceEEEEecCCCcccEE
Q 025417 195 IQRQELIKLWTLKEAYVKAVGRGFSAAP---------FNTFTIRARVVKMGGFH 239 (253)
Q Consensus 195 ~~~~~f~~~Wt~KEA~~Ka~G~GL~~~~---------l~~~~i~~~~~~~~~~~ 239 (253)
-..-.|.-=++.+|-+.-..|.|.+ .+ =.+++|...++....|.
T Consensus 516 i~~LIF~PGFSTa~~VtdvSGRGVG-MDVVk~~I~~LgG~I~V~S~~G~GT~Ft 568 (716)
T COG0643 516 ILNLIFAPGFSTAEQVTDVSGRGVG-MDVVKTNIEQLGGSISVSSEPGKGTTFT 568 (716)
T ss_pred HHHHHhcCCCCcchhhhcccCCccC-HHHHHHHHHHcCCEEEEEecCCCCeEEE
Confidence 1222333347889999999998874 22 13466666666533333
No 34
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=54.38 E-value=5.3 Score=29.74 Aligned_cols=15 Identities=47% Similarity=1.017 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhccCC
Q 025417 202 KLWTLKEAYVKAVGR 216 (253)
Q Consensus 202 ~~Wt~KEA~~Ka~G~ 216 (253)
.-|++||||+.|+|.
T Consensus 57 e~~aLKeafL~Al~~ 71 (103)
T PF11572_consen 57 ESWALKEAFLRALGM 71 (103)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 359999999999873
No 35
>cd08778 Death_TNFRSF21 Death domain of tumor necrosis factor receptor superfamily member 21. Death domain (DD) found in tumor necrosis factor receptor superfamily member 21 (TNFRSF21), also called death receptor-6, DR6. DR6 is an orphan receptor that is expressed ubiquitously, but shows high expression in lymphoid organs, heart, brain and pancreas. Results from DR6(-/-) mice indicate that DR6 plays an important regulatory role for the generation of adaptive immunity. It may also be involved in tumor cell survival and immune evasion. In neuronal cells, it binds beta-amyloid precursor protein (APP) and activates caspase-dependent cell death. It may contribute to the pathogenesis of Alzheimer's disease. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=39.29 E-value=69 Score=22.58 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=32.8
Q ss_pred ccchhHHHH-hhhhhHHHHHHhcCCHHHHHHHh--c-CCCchHHHHHHHHHHHHHHH
Q 025417 157 GIDVEEKQR-RLKNKILAFAKRYFSPDEVKLLT--A-ISDPEIQRQELIKLWTLKEA 209 (253)
Q Consensus 157 GVDIE~~~~-~~~~~~~~l~~~~fs~~E~~~l~--~-~~~~~~~~~~f~~~Wt~KEA 209 (253)
||||-.+-. .....|.++-+...+..|++--. + .....++.-+.++-||.+.+
T Consensus 2 gvdilklvaaqvgsqwid~y~sla~aterevaafsngytadherayaalqhwtird~ 58 (84)
T cd08778 2 GIDILKLVAAQVGSQWKDIYQFLCNASEREVAAFSNGYTADHERAYAALQHWTIRGP 58 (84)
T ss_pred cchHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHcCCCcccHHHHHHHHHhhhccCh
Confidence 888876543 23456777777777776655433 2 22234466677889998743
No 36
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=27.82 E-value=1.8e+02 Score=21.36 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=30.5
Q ss_pred HHHHHh-cCCHHHHHHHhcCCCchHHHHHHHH---HH--HHHHHHHhcc
Q 025417 172 LAFAKR-YFSPDEVKLLTAISDPEIQRQELIK---LW--TLKEAYVKAV 214 (253)
Q Consensus 172 ~~l~~~-~fs~~E~~~l~~~~~~~~~~~~f~~---~W--t~KEA~~Ka~ 214 (253)
..+..+ +||.+|.+.+.+.+.+.++.+..+. .| ++||.+++.+
T Consensus 22 D~Ll~n~~it~E~y~~V~a~~T~qdkmRkLld~v~akG~~~k~~F~~iL 70 (85)
T cd08324 22 DNLLKNDYFSTEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEYFLYLL 70 (85)
T ss_pred HHHhccCCccHHHHHHHHhCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 344555 9999999999999987777776654 45 3556665553
No 37
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=27.31 E-value=1.1e+02 Score=23.98 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=19.3
Q ss_pred CceeEeeCCCCCceeecCCCCCCCCCCeEEEEccccc
Q 025417 108 RSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSS 144 (253)
Q Consensus 108 ~~i~i~~~~~GkP~l~~~~~~~~~~~~~~fSISHs~~ 144 (253)
.++.+.|+.+|+|.=. ..+-+|+-|..+
T Consensus 55 sQVtveY~~~~~P~ri---------~tivvS~QH~~~ 82 (120)
T PF02772_consen 55 SQVTVEYDENGKPVRI---------DTIVVSTQHDED 82 (120)
T ss_dssp EEEEEEEEETTEEEEE---------EEEEEEEEE-TT
T ss_pred eeEEEeeccCCceeee---------eEEEEEecCCCC
Confidence 5688999888999644 246677777554
No 38
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=21.35 E-value=3.2e+02 Score=19.75 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=32.8
Q ss_pred hhHHHHhhhhhHHHHHHhc-CCHHHHHHHhcCC---CchHHHHHHHHHHHHHHH
Q 025417 160 VEEKQRRLKNKILAFAKRY-FSPDEVKLLTAIS---DPEIQRQELIKLWTLKEA 209 (253)
Q Consensus 160 IE~~~~~~~~~~~~l~~~~-fs~~E~~~l~~~~---~~~~~~~~f~~~Wt~KEA 209 (253)
++.+......+|..+++.. |+..|+..+.... +..++....+..|..+|.
T Consensus 5 l~~l~~~lG~~Wk~lar~LG~s~~eI~~ie~~~~r~~~~eq~~~mL~~W~~r~g 58 (86)
T cd08777 5 LDLLRENLGKKWKRCARKLGFTESEIEEIDHDYERDGLKEKVHQMLHKWKMKEG 58 (86)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHHHHHHHHHHHccC
Confidence 3444444455676666553 8889999887542 124567788899998873
No 39
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.11 E-value=77 Score=26.56 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=41.5
Q ss_pred eeEeeCCCCCceeecCCCCCCCCCCeEEEEcccccceeEEEccccccccchhHHHH-h--hhhhHHHHHHhcCCHHHHHH
Q 025417 110 LKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQR-R--LKNKILAFAKRYFSPDEVKL 186 (253)
Q Consensus 110 i~i~~~~~GkP~l~~~~~~~~~~~~~~fSISHs~~~v~~a~s~~~~VGVDIE~~~~-~--~~~~~~~l~~~~fs~~E~~~ 186 (253)
+.-.-++.+||++.+. +.-.+++-.+++++.+.+...-.|+ +|.+-+ . +++-+..+...+++..++..
T Consensus 108 vVAGl~~~~kPfIc~m--------D~IGc~~~~~DFVvsGTa~e~L~Gm-CE~ly~pnmepd~LFetisQa~Lna~DRDa 178 (204)
T KOG0180|consen 108 VVAGLDDDNKPFICGM--------DLIGCIDAPKDFVVSGTASEQLYGM-CEALYEPNMEPDELFETISQALLNAVDRDA 178 (204)
T ss_pred eEeccCCCCCeeEeec--------ccccCcCccCCeEEecchHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHhHhhhhh
Confidence 3334577999999853 4567888999999888875444454 233221 0 11224445555555555554
Q ss_pred Hhc
Q 025417 187 LTA 189 (253)
Q Consensus 187 l~~ 189 (253)
+.+
T Consensus 179 lSG 181 (204)
T KOG0180|consen 179 LSG 181 (204)
T ss_pred hcc
Confidence 443
No 40
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.12 E-value=65 Score=20.41 Aligned_cols=16 Identities=44% Similarity=0.773 Sum_probs=11.9
Q ss_pred cccceeEEEcccccccc
Q 025417 142 TSSLVACGVTVNVPIGI 158 (253)
Q Consensus 142 s~~~v~~a~s~~~~VGV 158 (253)
.|.+|.||++ +.+|-+
T Consensus 4 pG~~V~CAVT-g~~IpL 19 (42)
T PF09866_consen 4 PGSFVRCAVT-GQPIPL 19 (42)
T ss_pred CCCEEEEEee-CCcccH
Confidence 4788999998 666633
No 41
>PHA02085 hypothetical protein
Probab=20.03 E-value=1.4e+02 Score=21.62 Aligned_cols=32 Identities=9% Similarity=-0.067 Sum_probs=23.3
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHhhhhcCCCCCCce
Q 025417 75 HMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSL 110 (253)
Q Consensus 75 ~~~~~~~r~~~l~~R~llr~~L~~~~~~~g~~p~~i 110 (253)
+|+.+.+|.+|.+.| .+...++.+ +|.+..+-
T Consensus 4 rFKS~e~R~~Fa~~~-~~N~~IAe~---mGmdwWec 35 (87)
T PHA02085 4 RFKSEEHKAMFARRH-DCNQWIADK---MGTDWWEC 35 (87)
T ss_pred eecCHhHHHHHHhhc-hhhHHHHHH---hcCCcccc
Confidence 688899999888655 556667777 67776544
Done!