BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025418
         (253 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q09FX5|ATPF_NANDO ATP synthase subunit b, chloroplastic OS=Nandina domestica GN=atpF
           PE=3 SV=1
          Length = 184

 Score = 32.3 bits (72), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/71 (21%), Positives = 35/71 (49%)

Query: 100 IEAAFEKLLMTSFRRRKKEKINLKSRLKKQVEESPPWFKNLLNFVELPPKDVIFRRLFLF 159
           +E   E  ++  ++  ++EK+NL++ + K +E    +    + F +    + + +R+F  
Sbjct: 88  VEKEAEDYIVNGYQEIEREKLNLRNSIGKNLERLENYKNETIQFEQQRAINQVRQRVFQQ 147

Query: 160 AFMGGWSIMNS 170
           A  G    +NS
Sbjct: 148 ALQGALGTLNS 158


>sp|Q9FUT3|AB23B_ARATH ABC transporter B family member 23, mitochondrial OS=Arabidopsis
           thaliana GN=ABCB23 PE=2 SV=1
          Length = 678

 Score = 32.0 bits (71), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 7/57 (12%)

Query: 188 YFLNEKTKSLARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAYFF 244
           Y LN +T +L R  II  G+ A   IL ++V  ++PT+L      + ++T ++AY F
Sbjct: 204 YHLNRETGALNR--IIDRGSRAINTILSAMVFNVVPTIL-----EISMVTGILAYNF 253


>sp|A5D1V4|KCY_PELTS Cytidylate kinase OS=Pelotomaculum thermopropionicum (strain DSM
           13744 / JCM 10971 / SI) GN=cmk PE=3 SV=1
          Length = 226

 Score = 31.6 bits (70), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 158 LFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLARASIIGLGALASGWILGSV 217
           L  F+ G  +       PA   AVSL A +  + E+   L RA   G G +  G  +G+V
Sbjct: 78  LRVFLDGEDVTEEIRS-PAVSKAVSLVARVPAVRERLVELQRAMASGGGVVMEGRDIGTV 136

Query: 218 VVP 220
           V+P
Sbjct: 137 VLP 139


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,180,066
Number of Sequences: 539616
Number of extensions: 3613387
Number of successful extensions: 9799
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9796
Number of HSP's gapped (non-prelim): 6
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)